Multiple sequence alignment - TraesCS7A01G224800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G224800 chr7A 100.000 2903 0 0 1 2903 194282508 194279606 0.000000e+00 5361
1 TraesCS7A01G224800 chr4D 96.640 1905 62 2 1 1903 293832671 293834575 0.000000e+00 3162
2 TraesCS7A01G224800 chr2D 96.590 1906 62 3 1 1903 643238472 643240377 0.000000e+00 3157
3 TraesCS7A01G224800 chr1D 96.430 1905 60 5 1 1903 451289650 451291548 0.000000e+00 3134
4 TraesCS7A01G224800 chr3B 96.168 1905 71 2 1 1903 780739426 780741330 0.000000e+00 3112
5 TraesCS7A01G224800 chr2B 96.115 1905 71 3 1 1903 30180779 30178876 0.000000e+00 3105
6 TraesCS7A01G224800 chr2B 96.063 1905 72 3 1 1903 30167386 30165483 0.000000e+00 3099
7 TraesCS7A01G224800 chr2B 95.420 786 33 3 1904 2687 733192441 733191657 0.000000e+00 1249
8 TraesCS7A01G224800 chr2B 94.643 784 41 1 1904 2687 198067145 198066363 0.000000e+00 1214
9 TraesCS7A01G224800 chrUn 96.013 1906 73 3 1 1903 178462301 178464206 0.000000e+00 3096
10 TraesCS7A01G224800 chrUn 96.010 1905 74 2 1 1903 178500999 178502903 0.000000e+00 3096
11 TraesCS7A01G224800 chrUn 95.853 1905 76 3 1 1903 178518057 178519960 0.000000e+00 3077
12 TraesCS7A01G224800 chr1B 95.256 780 36 1 1904 2682 526316066 526316845 0.000000e+00 1234
13 TraesCS7A01G224800 chr6A 98.086 209 2 2 2695 2903 513239746 513239952 2.130000e-96 363
14 TraesCS7A01G224800 chr6A 98.515 202 3 0 2702 2903 223146488 223146287 9.890000e-95 357
15 TraesCS7A01G224800 chr6A 97.608 209 3 2 2695 2903 359247965 359248171 9.890000e-95 357
16 TraesCS7A01G224800 chr2A 99.010 202 2 0 2702 2903 539608198 539607997 2.130000e-96 363
17 TraesCS7A01G224800 chr2A 95.890 219 6 3 2685 2903 730976857 730977072 4.600000e-93 351
18 TraesCS7A01G224800 chr3A 97.608 209 3 2 2695 2903 193418117 193418323 9.890000e-95 357
19 TraesCS7A01G224800 chr3A 97.608 209 3 2 2695 2903 243080163 243080369 9.890000e-95 357
20 TraesCS7A01G224800 chr1A 97.608 209 3 2 2695 2903 42922904 42923110 9.890000e-95 357
21 TraesCS7A01G224800 chr1A 98.515 202 3 0 2702 2903 288227259 288227058 9.890000e-95 357


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G224800 chr7A 194279606 194282508 2902 True 5361 5361 100.000 1 2903 1 chr7A.!!$R1 2902
1 TraesCS7A01G224800 chr4D 293832671 293834575 1904 False 3162 3162 96.640 1 1903 1 chr4D.!!$F1 1902
2 TraesCS7A01G224800 chr2D 643238472 643240377 1905 False 3157 3157 96.590 1 1903 1 chr2D.!!$F1 1902
3 TraesCS7A01G224800 chr1D 451289650 451291548 1898 False 3134 3134 96.430 1 1903 1 chr1D.!!$F1 1902
4 TraesCS7A01G224800 chr3B 780739426 780741330 1904 False 3112 3112 96.168 1 1903 1 chr3B.!!$F1 1902
5 TraesCS7A01G224800 chr2B 30178876 30180779 1903 True 3105 3105 96.115 1 1903 1 chr2B.!!$R2 1902
6 TraesCS7A01G224800 chr2B 30165483 30167386 1903 True 3099 3099 96.063 1 1903 1 chr2B.!!$R1 1902
7 TraesCS7A01G224800 chr2B 733191657 733192441 784 True 1249 1249 95.420 1904 2687 1 chr2B.!!$R4 783
8 TraesCS7A01G224800 chr2B 198066363 198067145 782 True 1214 1214 94.643 1904 2687 1 chr2B.!!$R3 783
9 TraesCS7A01G224800 chrUn 178462301 178464206 1905 False 3096 3096 96.013 1 1903 1 chrUn.!!$F1 1902
10 TraesCS7A01G224800 chrUn 178500999 178502903 1904 False 3096 3096 96.010 1 1903 1 chrUn.!!$F2 1902
11 TraesCS7A01G224800 chrUn 178518057 178519960 1903 False 3077 3077 95.853 1 1903 1 chrUn.!!$F3 1902
12 TraesCS7A01G224800 chr1B 526316066 526316845 779 False 1234 1234 95.256 1904 2682 1 chr1B.!!$F1 778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.034059 AGCAGGACGTGAGGTTCTTG 59.966 55.0 0.0 0.0 29.42 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 1996 1.061812 AGCCTCCCTACACATCATCCT 60.062 52.381 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.190744 CACAATCTTCAGCAGCAACTGAT 59.809 43.478 9.24 0.00 45.75 2.90
98 99 0.034059 AGCAGGACGTGAGGTTCTTG 59.966 55.000 0.00 0.00 29.42 3.02
112 113 2.594303 CTTGTCAAGGCGGTGGCA 60.594 61.111 4.52 0.00 42.47 4.92
243 245 3.117131 AGGAAACCCACTGGAAATCTTGT 60.117 43.478 0.00 0.00 34.81 3.16
489 492 5.648092 GGAATTGCTGAAGAAAGGCTTAGTA 59.352 40.000 0.00 0.00 36.83 1.82
505 508 0.462375 AGTATGGCGCATCGGTAACA 59.538 50.000 10.83 0.00 0.00 2.41
527 530 0.953471 CAGTCGGTCCGAATTTGGCA 60.953 55.000 17.32 0.00 37.72 4.92
554 557 1.628340 CTGGATACCACACCCTGTTGA 59.372 52.381 0.00 0.00 0.00 3.18
555 558 1.349688 TGGATACCACACCCTGTTGAC 59.650 52.381 0.00 0.00 0.00 3.18
557 560 1.349688 GATACCACACCCTGTTGACCA 59.650 52.381 0.00 0.00 0.00 4.02
575 578 0.525761 CAGCCACCAATTACCCAACG 59.474 55.000 0.00 0.00 0.00 4.10
587 590 4.278513 CCAACGGGGAAGGTGCCA 62.279 66.667 0.00 0.00 40.01 4.92
594 597 2.670148 GGGAAGGTGCCATCTCCGT 61.670 63.158 0.00 0.00 0.00 4.69
632 635 0.461870 GACGAGTATGGTGCATGGCA 60.462 55.000 0.00 0.00 35.60 4.92
696 699 9.601217 GTTCAGGAGATACTAAAGATTAAAGCA 57.399 33.333 0.00 0.00 0.00 3.91
757 760 1.838112 ACGTACCGGTATCTTCACCA 58.162 50.000 19.19 0.00 38.61 4.17
1147 1155 3.143782 GCAGAAAGCAATGAAGGGGACT 61.144 50.000 0.00 0.00 44.03 3.85
1167 1175 0.603707 GGCTGCGCCTGATTATGCTA 60.604 55.000 4.18 0.00 46.69 3.49
1196 1204 4.340019 TTGGCATGTGCGCAACGG 62.340 61.111 14.00 5.20 43.26 4.44
1431 1439 0.732880 CGAAGCTGAATGTCGACGGT 60.733 55.000 11.62 0.00 36.92 4.83
1439 1447 3.207778 TGAATGTCGACGGTTCCTTTTT 58.792 40.909 22.80 3.64 0.00 1.94
1482 1491 1.296715 GGAATGGTGCTCCGTGACT 59.703 57.895 0.00 0.00 36.30 3.41
1492 1501 0.033405 CTCCGTGACTAGGAAGGGGA 60.033 60.000 0.00 0.00 37.32 4.81
1626 1635 5.026462 CGTTTATCGTCGAGTGTGATAGTT 58.974 41.667 0.00 0.00 34.52 2.24
1631 1640 2.923655 CGTCGAGTGTGATAGTTTGCAT 59.076 45.455 0.00 0.00 0.00 3.96
1950 1960 5.463724 GTCAAGGACTACAAGTTCAAGACAG 59.536 44.000 5.72 0.00 33.01 3.51
1976 1986 5.780282 TCCAATATGGGTTCGAGTCTATGAT 59.220 40.000 0.00 0.00 38.32 2.45
1986 1996 3.138468 TCGAGTCTATGATCTTCCCCTCA 59.862 47.826 0.00 0.00 0.00 3.86
2070 2080 2.910360 CGGGGACTGATGGCATGA 59.090 61.111 3.81 0.00 36.31 3.07
2173 2183 4.417183 GGAGGATAAGGAGGAAGGGAAAAT 59.583 45.833 0.00 0.00 0.00 1.82
2228 2238 0.321653 AGGAGAAATGGCGTCGCTTT 60.322 50.000 18.11 10.69 0.00 3.51
2236 2246 0.739462 TGGCGTCGCTTTGAGTATGG 60.739 55.000 18.11 0.00 0.00 2.74
2240 2250 1.659098 CGTCGCTTTGAGTATGGGTTC 59.341 52.381 0.00 0.00 0.00 3.62
2397 2407 1.152030 AAGGGGAGCTGGAGTCACA 60.152 57.895 0.00 0.00 0.00 3.58
2399 2409 2.664081 GGGGAGCTGGAGTCACAGG 61.664 68.421 0.00 0.00 38.90 4.00
2454 2464 3.532232 TGGTAGGAGTCTGAACCTAGGAT 59.468 47.826 17.98 2.38 39.10 3.24
2488 2498 0.541392 ACAGGCAGTGACAGTGACAA 59.459 50.000 18.45 0.00 0.00 3.18
2502 2512 0.527113 TGACAATTGGCGCAAGGATG 59.473 50.000 10.83 3.64 38.28 3.51
2531 2541 3.626930 AGCCGGGCATAAAATTACAGAA 58.373 40.909 23.09 0.00 0.00 3.02
2642 2652 7.180051 GTGGAAGAGATACATGAGGGATCTATT 59.820 40.741 0.00 0.00 34.65 1.73
2671 2681 4.024048 GCAACTAAACTTTAGCAGTGCTCA 60.024 41.667 23.64 8.20 40.44 4.26
2672 2682 5.683859 CAACTAAACTTTAGCAGTGCTCAG 58.316 41.667 23.64 20.50 40.44 3.35
2678 2688 1.632589 TTAGCAGTGCTCAGACCTCA 58.367 50.000 23.64 0.00 40.44 3.86
2691 2701 3.465403 CCTCAGAGGTGCCGGGAG 61.465 72.222 8.54 0.00 0.00 4.30
2692 2702 2.681778 CTCAGAGGTGCCGGGAGT 60.682 66.667 2.18 0.00 0.00 3.85
2693 2703 2.997315 TCAGAGGTGCCGGGAGTG 60.997 66.667 2.18 0.00 0.00 3.51
2694 2704 2.997315 CAGAGGTGCCGGGAGTGA 60.997 66.667 2.18 0.00 0.00 3.41
2695 2705 2.681778 AGAGGTGCCGGGAGTGAG 60.682 66.667 2.18 0.00 0.00 3.51
2696 2706 3.775654 GAGGTGCCGGGAGTGAGG 61.776 72.222 2.18 0.00 0.00 3.86
2699 2709 3.775654 GTGCCGGGAGTGAGGGAG 61.776 72.222 2.18 0.00 0.00 4.30
2700 2710 3.992641 TGCCGGGAGTGAGGGAGA 61.993 66.667 2.18 0.00 0.00 3.71
2701 2711 3.462678 GCCGGGAGTGAGGGAGAC 61.463 72.222 2.18 0.00 0.00 3.36
2702 2712 2.360980 CCGGGAGTGAGGGAGACT 59.639 66.667 0.00 0.00 0.00 3.24
2703 2713 1.613610 CCGGGAGTGAGGGAGACTA 59.386 63.158 0.00 0.00 0.00 2.59
2704 2714 0.752376 CCGGGAGTGAGGGAGACTAC 60.752 65.000 0.00 0.00 0.00 2.73
2705 2715 0.256464 CGGGAGTGAGGGAGACTACT 59.744 60.000 0.00 0.00 0.00 2.57
2706 2716 1.770294 GGGAGTGAGGGAGACTACTG 58.230 60.000 0.00 0.00 0.00 2.74
2707 2717 1.285373 GGGAGTGAGGGAGACTACTGA 59.715 57.143 0.00 0.00 0.00 3.41
2708 2718 2.650322 GGAGTGAGGGAGACTACTGAG 58.350 57.143 0.00 0.00 0.00 3.35
2709 2719 2.650322 GAGTGAGGGAGACTACTGAGG 58.350 57.143 0.00 0.00 0.00 3.86
2710 2720 1.286553 AGTGAGGGAGACTACTGAGGG 59.713 57.143 0.00 0.00 0.00 4.30
2711 2721 1.285373 GTGAGGGAGACTACTGAGGGA 59.715 57.143 0.00 0.00 0.00 4.20
2712 2722 1.566703 TGAGGGAGACTACTGAGGGAG 59.433 57.143 0.00 0.00 0.00 4.30
2713 2723 1.567175 GAGGGAGACTACTGAGGGAGT 59.433 57.143 0.00 0.00 38.88 3.85
2714 2724 1.567175 AGGGAGACTACTGAGGGAGTC 59.433 57.143 8.29 8.29 42.06 3.36
2715 2725 1.410507 GGGAGACTACTGAGGGAGTCC 60.411 61.905 11.68 0.00 42.62 3.85
2717 2727 2.650322 GAGACTACTGAGGGAGTCCTG 58.350 57.143 9.58 0.01 45.05 3.86
2718 2728 1.286553 AGACTACTGAGGGAGTCCTGG 59.713 57.143 9.58 0.00 45.05 4.45
2719 2729 1.285373 GACTACTGAGGGAGTCCTGGA 59.715 57.143 9.58 0.00 45.05 3.86
2720 2730 1.933765 ACTACTGAGGGAGTCCTGGAT 59.066 52.381 9.58 0.00 45.05 3.41
2721 2731 2.316372 ACTACTGAGGGAGTCCTGGATT 59.684 50.000 9.58 0.00 45.05 3.01
2722 2732 3.532232 ACTACTGAGGGAGTCCTGGATTA 59.468 47.826 9.58 0.00 45.05 1.75
2723 2733 3.039252 ACTGAGGGAGTCCTGGATTAG 57.961 52.381 9.58 2.27 45.05 1.73
2724 2734 2.324541 CTGAGGGAGTCCTGGATTAGG 58.675 57.143 9.58 0.00 45.05 2.69
2732 2742 2.231642 CCTGGATTAGGGGGTGTCC 58.768 63.158 0.00 0.00 43.33 4.02
2733 2743 1.696097 CCTGGATTAGGGGGTGTCCG 61.696 65.000 0.00 0.00 43.33 4.79
2734 2744 1.691337 TGGATTAGGGGGTGTCCGG 60.691 63.158 0.00 0.00 36.01 5.14
2735 2745 1.383525 GGATTAGGGGGTGTCCGGA 60.384 63.158 0.00 0.00 36.01 5.14
2736 2746 0.767060 GGATTAGGGGGTGTCCGGAT 60.767 60.000 7.81 0.00 36.01 4.18
2737 2747 0.396811 GATTAGGGGGTGTCCGGATG 59.603 60.000 7.81 0.00 36.01 3.51
2738 2748 1.060163 ATTAGGGGGTGTCCGGATGG 61.060 60.000 7.81 0.00 36.01 3.51
2742 2752 4.489771 GGGTGTCCGGATGGCCAG 62.490 72.222 13.05 0.00 34.14 4.85
2743 2753 3.399181 GGTGTCCGGATGGCCAGA 61.399 66.667 13.05 0.00 34.14 3.86
2744 2754 2.125106 GTGTCCGGATGGCCAGAC 60.125 66.667 13.05 13.86 41.18 3.51
2745 2755 2.284625 TGTCCGGATGGCCAGACT 60.285 61.111 20.06 0.44 41.34 3.24
2746 2756 1.001120 TGTCCGGATGGCCAGACTA 59.999 57.895 20.06 7.40 41.34 2.59
2747 2757 0.398522 TGTCCGGATGGCCAGACTAT 60.399 55.000 20.06 0.00 41.34 2.12
2748 2758 1.133294 TGTCCGGATGGCCAGACTATA 60.133 52.381 20.06 1.76 41.34 1.31
2749 2759 1.272769 GTCCGGATGGCCAGACTATAC 59.727 57.143 13.05 1.03 38.36 1.47
2750 2760 0.608640 CCGGATGGCCAGACTATACC 59.391 60.000 13.05 4.90 0.00 2.73
2751 2761 1.633774 CGGATGGCCAGACTATACCT 58.366 55.000 13.05 0.00 0.00 3.08
2752 2762 1.971357 CGGATGGCCAGACTATACCTT 59.029 52.381 13.05 0.00 0.00 3.50
2753 2763 2.028930 CGGATGGCCAGACTATACCTTC 60.029 54.545 13.05 0.00 0.00 3.46
2754 2764 2.972713 GGATGGCCAGACTATACCTTCA 59.027 50.000 13.05 0.00 0.00 3.02
2755 2765 3.007398 GGATGGCCAGACTATACCTTCAG 59.993 52.174 13.05 0.00 0.00 3.02
2756 2766 1.762957 TGGCCAGACTATACCTTCAGC 59.237 52.381 0.00 0.00 0.00 4.26
2757 2767 1.070914 GGCCAGACTATACCTTCAGCC 59.929 57.143 0.00 0.00 0.00 4.85
2758 2768 1.269831 GCCAGACTATACCTTCAGCCG 60.270 57.143 0.00 0.00 0.00 5.52
2759 2769 1.341531 CCAGACTATACCTTCAGCCGG 59.658 57.143 0.00 0.00 0.00 6.13
2760 2770 2.307768 CAGACTATACCTTCAGCCGGA 58.692 52.381 5.05 0.00 0.00 5.14
2761 2771 2.034812 CAGACTATACCTTCAGCCGGAC 59.965 54.545 5.05 0.00 0.00 4.79
2762 2772 2.091775 AGACTATACCTTCAGCCGGACT 60.092 50.000 5.05 0.00 0.00 3.85
2763 2773 2.293955 GACTATACCTTCAGCCGGACTC 59.706 54.545 5.05 0.00 0.00 3.36
2764 2774 1.614413 CTATACCTTCAGCCGGACTCC 59.386 57.143 5.05 0.00 0.00 3.85
2765 2775 0.032017 ATACCTTCAGCCGGACTCCT 60.032 55.000 5.05 0.00 0.00 3.69
2766 2776 0.970937 TACCTTCAGCCGGACTCCTG 60.971 60.000 5.05 2.32 0.00 3.86
2767 2777 2.581354 CTTCAGCCGGACTCCTGG 59.419 66.667 5.05 0.00 41.93 4.45
2768 2778 1.984570 CTTCAGCCGGACTCCTGGA 60.985 63.158 5.05 0.00 41.53 3.86
2769 2779 2.232298 CTTCAGCCGGACTCCTGGAC 62.232 65.000 5.05 2.71 41.53 4.02
2770 2780 2.681778 CAGCCGGACTCCTGGACT 60.682 66.667 5.05 4.47 41.53 3.85
2771 2781 1.379977 CAGCCGGACTCCTGGACTA 60.380 63.158 5.05 0.00 41.53 2.59
2772 2782 0.757188 CAGCCGGACTCCTGGACTAT 60.757 60.000 5.05 0.00 41.53 2.12
2773 2783 0.757188 AGCCGGACTCCTGGACTATG 60.757 60.000 5.05 0.00 41.53 2.23
2774 2784 0.755698 GCCGGACTCCTGGACTATGA 60.756 60.000 5.05 0.00 41.53 2.15
2775 2785 1.776662 CCGGACTCCTGGACTATGAA 58.223 55.000 0.00 0.00 41.53 2.57
2776 2786 1.683917 CCGGACTCCTGGACTATGAAG 59.316 57.143 0.00 0.00 41.53 3.02
2777 2787 2.656002 CGGACTCCTGGACTATGAAGA 58.344 52.381 0.00 0.00 0.00 2.87
2778 2788 3.226777 CGGACTCCTGGACTATGAAGAT 58.773 50.000 0.00 0.00 0.00 2.40
2779 2789 3.639094 CGGACTCCTGGACTATGAAGATT 59.361 47.826 0.00 0.00 0.00 2.40
2780 2790 4.261825 CGGACTCCTGGACTATGAAGATTC 60.262 50.000 0.00 0.00 0.00 2.52
2781 2791 4.651503 GGACTCCTGGACTATGAAGATTCA 59.348 45.833 0.00 0.00 42.14 2.57
2782 2792 5.129485 GGACTCCTGGACTATGAAGATTCAA 59.871 44.000 0.00 0.00 41.13 2.69
2783 2793 6.232581 ACTCCTGGACTATGAAGATTCAAG 57.767 41.667 0.00 2.13 41.13 3.02
2784 2794 5.960811 ACTCCTGGACTATGAAGATTCAAGA 59.039 40.000 0.00 0.00 41.13 3.02
2785 2795 6.614906 ACTCCTGGACTATGAAGATTCAAGAT 59.385 38.462 0.00 0.00 41.13 2.40
2786 2796 7.127032 ACTCCTGGACTATGAAGATTCAAGATT 59.873 37.037 0.00 0.00 41.13 2.40
2787 2797 7.278135 TCCTGGACTATGAAGATTCAAGATTG 58.722 38.462 0.00 0.00 41.13 2.67
2788 2798 7.126268 TCCTGGACTATGAAGATTCAAGATTGA 59.874 37.037 0.00 0.00 41.13 2.57
2800 2810 3.926616 TCAAGATTGAAGACTTCGTCCC 58.073 45.455 10.56 0.53 33.55 4.46
2801 2811 2.656560 AGATTGAAGACTTCGTCCCG 57.343 50.000 10.56 0.00 32.18 5.14
2802 2812 1.893801 AGATTGAAGACTTCGTCCCGT 59.106 47.619 10.56 0.00 32.18 5.28
2803 2813 1.993370 GATTGAAGACTTCGTCCCGTG 59.007 52.381 10.56 0.00 32.18 4.94
2804 2814 0.748450 TTGAAGACTTCGTCCCGTGT 59.252 50.000 10.56 0.00 32.18 4.49
2805 2815 0.313043 TGAAGACTTCGTCCCGTGTC 59.687 55.000 10.56 0.00 32.18 3.67
2806 2816 0.388263 GAAGACTTCGTCCCGTGTCC 60.388 60.000 0.00 0.00 34.39 4.02
2807 2817 2.126580 GACTTCGTCCCGTGTCCG 60.127 66.667 0.00 0.00 0.00 4.79
2827 2837 3.576232 AGGGACTTTCCTTGGCGT 58.424 55.556 0.00 0.00 36.57 5.68
2828 2838 1.073199 AGGGACTTTCCTTGGCGTG 59.927 57.895 0.00 0.00 36.57 5.34
2829 2839 1.971695 GGGACTTTCCTTGGCGTGG 60.972 63.158 0.00 0.00 36.57 4.94
2830 2840 1.072505 GGACTTTCCTTGGCGTGGA 59.927 57.895 0.00 0.00 32.53 4.02
2831 2841 0.536460 GGACTTTCCTTGGCGTGGAA 60.536 55.000 6.88 6.88 41.33 3.53
2832 2842 0.875059 GACTTTCCTTGGCGTGGAAG 59.125 55.000 10.20 8.04 43.48 3.46
2833 2843 0.537371 ACTTTCCTTGGCGTGGAAGG 60.537 55.000 15.33 15.33 43.48 3.46
2842 2852 2.956987 CGTGGAAGGCAAGCTTGG 59.043 61.111 27.10 9.80 0.00 3.61
2850 2860 1.656441 GGCAAGCTTGGCGATATGG 59.344 57.895 33.68 3.72 43.97 2.74
2851 2861 0.819259 GGCAAGCTTGGCGATATGGA 60.819 55.000 33.68 0.00 43.97 3.41
2852 2862 1.242076 GCAAGCTTGGCGATATGGAT 58.758 50.000 27.10 0.00 0.00 3.41
2853 2863 2.426522 GCAAGCTTGGCGATATGGATA 58.573 47.619 27.10 0.00 0.00 2.59
2854 2864 3.012518 GCAAGCTTGGCGATATGGATAT 58.987 45.455 27.10 0.00 0.00 1.63
2855 2865 3.181503 GCAAGCTTGGCGATATGGATATG 60.182 47.826 27.10 0.00 0.00 1.78
2856 2866 2.636830 AGCTTGGCGATATGGATATGC 58.363 47.619 0.00 0.00 0.00 3.14
2857 2867 2.026915 AGCTTGGCGATATGGATATGCA 60.027 45.455 0.00 0.00 0.00 3.96
2858 2868 2.353889 GCTTGGCGATATGGATATGCAG 59.646 50.000 2.55 0.00 0.00 4.41
2859 2869 3.865446 CTTGGCGATATGGATATGCAGA 58.135 45.455 2.55 0.00 0.00 4.26
2860 2870 4.449131 CTTGGCGATATGGATATGCAGAT 58.551 43.478 3.79 3.79 0.00 2.90
2861 2871 4.063998 TGGCGATATGGATATGCAGATC 57.936 45.455 18.76 18.76 0.00 2.75
2862 2872 3.708121 TGGCGATATGGATATGCAGATCT 59.292 43.478 23.82 4.89 0.00 2.75
2863 2873 4.202192 TGGCGATATGGATATGCAGATCTC 60.202 45.833 23.82 18.16 0.00 2.75
2864 2874 4.305769 GCGATATGGATATGCAGATCTCC 58.694 47.826 23.82 13.98 0.00 3.71
2865 2875 4.039004 GCGATATGGATATGCAGATCTCCT 59.961 45.833 23.82 8.32 0.00 3.69
2866 2876 5.242615 GCGATATGGATATGCAGATCTCCTA 59.757 44.000 23.82 10.05 0.00 2.94
2867 2877 6.676950 CGATATGGATATGCAGATCTCCTAC 58.323 44.000 23.82 4.61 0.00 3.18
2868 2878 6.294453 CGATATGGATATGCAGATCTCCTACC 60.294 46.154 23.82 4.52 0.00 3.18
2869 2879 4.132122 TGGATATGCAGATCTCCTACCA 57.868 45.455 20.04 7.14 0.00 3.25
2870 2880 4.692328 TGGATATGCAGATCTCCTACCAT 58.308 43.478 20.04 0.00 0.00 3.55
2871 2881 5.096521 TGGATATGCAGATCTCCTACCATT 58.903 41.667 20.04 0.00 0.00 3.16
2872 2882 5.046087 TGGATATGCAGATCTCCTACCATTG 60.046 44.000 20.04 0.00 0.00 2.82
2873 2883 5.046014 GGATATGCAGATCTCCTACCATTGT 60.046 44.000 20.04 0.00 0.00 2.71
2874 2884 6.155221 GGATATGCAGATCTCCTACCATTGTA 59.845 42.308 20.04 0.00 0.00 2.41
2875 2885 5.894298 ATGCAGATCTCCTACCATTGTAA 57.106 39.130 0.00 0.00 0.00 2.41
2876 2886 5.023533 TGCAGATCTCCTACCATTGTAAC 57.976 43.478 0.00 0.00 0.00 2.50
2877 2887 4.141711 TGCAGATCTCCTACCATTGTAACC 60.142 45.833 0.00 0.00 0.00 2.85
2878 2888 4.621991 CAGATCTCCTACCATTGTAACCG 58.378 47.826 0.00 0.00 0.00 4.44
2879 2889 4.341235 CAGATCTCCTACCATTGTAACCGA 59.659 45.833 0.00 0.00 0.00 4.69
2880 2890 4.341520 AGATCTCCTACCATTGTAACCGAC 59.658 45.833 0.00 0.00 0.00 4.79
2881 2891 3.705051 TCTCCTACCATTGTAACCGACT 58.295 45.455 0.00 0.00 0.00 4.18
2882 2892 4.091549 TCTCCTACCATTGTAACCGACTT 58.908 43.478 0.00 0.00 0.00 3.01
2883 2893 4.529377 TCTCCTACCATTGTAACCGACTTT 59.471 41.667 0.00 0.00 0.00 2.66
2884 2894 4.571919 TCCTACCATTGTAACCGACTTTG 58.428 43.478 0.00 0.00 0.00 2.77
2885 2895 4.040706 TCCTACCATTGTAACCGACTTTGT 59.959 41.667 0.00 0.00 0.00 2.83
2886 2896 4.153475 CCTACCATTGTAACCGACTTTGTG 59.847 45.833 0.00 0.00 0.00 3.33
2887 2897 3.547746 ACCATTGTAACCGACTTTGTGT 58.452 40.909 0.00 0.00 0.00 3.72
2888 2898 4.706035 ACCATTGTAACCGACTTTGTGTA 58.294 39.130 0.00 0.00 0.00 2.90
2889 2899 5.124645 ACCATTGTAACCGACTTTGTGTAA 58.875 37.500 0.00 0.00 0.00 2.41
2890 2900 5.007921 ACCATTGTAACCGACTTTGTGTAAC 59.992 40.000 0.00 0.00 37.35 2.50
2891 2901 5.445845 CATTGTAACCGACTTTGTGTAACC 58.554 41.667 0.00 0.00 34.36 2.85
2892 2902 3.465871 TGTAACCGACTTTGTGTAACCC 58.534 45.455 0.00 0.00 34.36 4.11
2893 2903 3.134442 TGTAACCGACTTTGTGTAACCCT 59.866 43.478 0.00 0.00 34.36 4.34
2894 2904 4.343526 TGTAACCGACTTTGTGTAACCCTA 59.656 41.667 0.00 0.00 34.36 3.53
2895 2905 4.420522 AACCGACTTTGTGTAACCCTAA 57.579 40.909 0.00 0.00 34.36 2.69
2896 2906 3.732212 ACCGACTTTGTGTAACCCTAAC 58.268 45.455 0.00 0.00 34.36 2.34
2897 2907 3.069289 CCGACTTTGTGTAACCCTAACC 58.931 50.000 0.00 0.00 34.36 2.85
2898 2908 3.069289 CGACTTTGTGTAACCCTAACCC 58.931 50.000 0.00 0.00 34.36 4.11
2899 2909 3.244318 CGACTTTGTGTAACCCTAACCCT 60.244 47.826 0.00 0.00 34.36 4.34
2900 2910 4.321718 GACTTTGTGTAACCCTAACCCTC 58.678 47.826 0.00 0.00 34.36 4.30
2901 2911 3.978672 ACTTTGTGTAACCCTAACCCTCT 59.021 43.478 0.00 0.00 34.36 3.69
2902 2912 4.041321 ACTTTGTGTAACCCTAACCCTCTC 59.959 45.833 0.00 0.00 34.36 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 3.357079 CTGTGCCACCGCCTTGAC 61.357 66.667 0.00 0.00 0.00 3.18
112 113 1.923909 GAAGGTGGGTAGGGCCTGT 60.924 63.158 18.53 0.00 37.43 4.00
243 245 4.074526 GGCCTCAGCAGCGAGTCA 62.075 66.667 0.00 0.00 42.56 3.41
271 274 1.777272 GTCCTTGAATCCCATAGCCCT 59.223 52.381 0.00 0.00 0.00 5.19
275 278 5.130145 AGTCTGAAGTCCTTGAATCCCATAG 59.870 44.000 0.00 0.00 0.00 2.23
489 492 1.523711 CCTGTTACCGATGCGCCAT 60.524 57.895 4.18 0.00 0.00 4.40
505 508 0.673644 CAAATTCGGACCGACTGCCT 60.674 55.000 18.12 0.00 34.89 4.75
527 530 1.622725 GGTGTGGTATCCAGGAGTCCT 60.623 57.143 5.62 5.62 32.34 3.85
554 557 0.485099 TTGGGTAATTGGTGGCTGGT 59.515 50.000 0.00 0.00 0.00 4.00
555 558 0.894835 GTTGGGTAATTGGTGGCTGG 59.105 55.000 0.00 0.00 0.00 4.85
557 560 0.610785 CCGTTGGGTAATTGGTGGCT 60.611 55.000 0.00 0.00 0.00 4.75
575 578 2.597903 GGAGATGGCACCTTCCCC 59.402 66.667 0.00 0.00 0.00 4.81
587 590 1.948104 CTCTGAGACTCGACGGAGAT 58.052 55.000 0.00 0.00 43.27 2.75
594 597 2.112190 TCTAGGAGCTCTGAGACTCGA 58.888 52.381 14.64 0.39 33.55 4.04
632 635 2.044758 ACTGTTGAAGTAGGGTTCCGT 58.955 47.619 0.00 0.00 37.36 4.69
744 747 3.562505 GCTACGTATGGTGAAGATACCG 58.437 50.000 0.00 0.00 43.87 4.02
1167 1175 1.074405 ACATGCCAACATCTCCACAGT 59.926 47.619 0.00 0.00 32.87 3.55
1196 1204 2.009774 CCGGTTTGTCATGAGTGATCC 58.990 52.381 0.00 0.00 36.60 3.36
1431 1439 3.088532 CCCGTCATCATGGAAAAAGGAA 58.911 45.455 0.00 0.00 0.00 3.36
1439 1447 2.443394 GCCCTCCCGTCATCATGGA 61.443 63.158 0.00 0.00 0.00 3.41
1482 1491 5.163237 CGGAGAAAATAATGTCCCCTTCCTA 60.163 44.000 0.00 0.00 0.00 2.94
1492 1501 3.124636 GCGACACACGGAGAAAATAATGT 59.875 43.478 0.00 0.00 42.83 2.71
1631 1640 1.068125 GCATTGATCAGTTGCACTGCA 60.068 47.619 21.37 0.00 45.54 4.41
1919 1928 6.657541 TGAACTTGTAGTCCTTGACAGTTTTT 59.342 34.615 0.00 0.00 34.60 1.94
1950 1960 4.138487 AGACTCGAACCCATATTGGAAC 57.862 45.455 0.00 0.00 40.96 3.62
1986 1996 1.061812 AGCCTCCCTACACATCATCCT 60.062 52.381 0.00 0.00 0.00 3.24
2070 2080 5.892119 TGATCCGAAGATACTTTCCTACTGT 59.108 40.000 0.00 0.00 30.90 3.55
2228 2238 3.769189 TCTGGTAGGAACCCATACTCA 57.231 47.619 0.00 0.00 46.16 3.41
2236 2246 4.989168 CGTAGCATAAATCTGGTAGGAACC 59.011 45.833 0.00 0.00 46.98 3.62
2240 2250 5.221263 ACAGACGTAGCATAAATCTGGTAGG 60.221 44.000 4.71 0.00 38.49 3.18
2354 2364 0.037734 TCTCACTCGTAGGCCTGTCA 59.962 55.000 17.99 0.00 0.00 3.58
2355 2365 1.135344 GTTCTCACTCGTAGGCCTGTC 60.135 57.143 17.99 7.67 0.00 3.51
2356 2366 0.889306 GTTCTCACTCGTAGGCCTGT 59.111 55.000 17.99 0.30 0.00 4.00
2397 2407 0.622665 CCATCAAACCTGCCTCTCCT 59.377 55.000 0.00 0.00 0.00 3.69
2399 2409 1.743996 GTCCATCAAACCTGCCTCTC 58.256 55.000 0.00 0.00 0.00 3.20
2454 2464 2.180276 GCCTGTTCTAACTCTGGAGGA 58.820 52.381 2.58 0.00 0.00 3.71
2488 2498 3.518003 GCTCATCCTTGCGCCAAT 58.482 55.556 4.18 0.00 0.00 3.16
2531 2541 4.202609 ACCTCATCATCCAGTGTTTCCTTT 60.203 41.667 0.00 0.00 0.00 3.11
2642 2652 7.519970 GCACTGCTAAAGTTTAGTTGCTTTCTA 60.520 37.037 24.22 2.50 36.83 2.10
2678 2688 2.681778 CTCACTCCCGGCACCTCT 60.682 66.667 0.00 0.00 0.00 3.69
2684 2694 2.569218 TAGTCTCCCTCACTCCCGGC 62.569 65.000 0.00 0.00 0.00 6.13
2687 2697 1.285373 TCAGTAGTCTCCCTCACTCCC 59.715 57.143 0.00 0.00 0.00 4.30
2688 2698 2.650322 CTCAGTAGTCTCCCTCACTCC 58.350 57.143 0.00 0.00 0.00 3.85
2689 2699 2.650322 CCTCAGTAGTCTCCCTCACTC 58.350 57.143 0.00 0.00 0.00 3.51
2690 2700 1.286553 CCCTCAGTAGTCTCCCTCACT 59.713 57.143 0.00 0.00 0.00 3.41
2691 2701 1.285373 TCCCTCAGTAGTCTCCCTCAC 59.715 57.143 0.00 0.00 0.00 3.51
2692 2702 1.566703 CTCCCTCAGTAGTCTCCCTCA 59.433 57.143 0.00 0.00 0.00 3.86
2693 2703 1.567175 ACTCCCTCAGTAGTCTCCCTC 59.433 57.143 0.00 0.00 31.37 4.30
2694 2704 1.567175 GACTCCCTCAGTAGTCTCCCT 59.433 57.143 0.00 0.00 39.24 4.20
2695 2705 1.410507 GGACTCCCTCAGTAGTCTCCC 60.411 61.905 4.80 0.00 41.53 4.30
2696 2706 1.567175 AGGACTCCCTCAGTAGTCTCC 59.433 57.143 4.80 0.00 38.86 3.71
2697 2707 2.650322 CAGGACTCCCTCAGTAGTCTC 58.350 57.143 4.80 0.00 42.02 3.36
2698 2708 1.286553 CCAGGACTCCCTCAGTAGTCT 59.713 57.143 4.80 0.00 42.02 3.24
2699 2709 1.285373 TCCAGGACTCCCTCAGTAGTC 59.715 57.143 0.00 0.00 42.02 2.59
2700 2710 1.383963 TCCAGGACTCCCTCAGTAGT 58.616 55.000 0.00 0.00 42.02 2.73
2701 2711 2.765689 ATCCAGGACTCCCTCAGTAG 57.234 55.000 0.00 0.00 42.02 2.57
2702 2712 4.186077 CTAATCCAGGACTCCCTCAGTA 57.814 50.000 0.00 0.00 42.02 2.74
2703 2713 3.039252 CTAATCCAGGACTCCCTCAGT 57.961 52.381 0.00 0.00 42.02 3.41
2714 2724 1.696097 CGGACACCCCCTAATCCAGG 61.696 65.000 0.00 0.00 45.07 4.45
2715 2725 1.696097 CCGGACACCCCCTAATCCAG 61.696 65.000 0.00 0.00 0.00 3.86
2716 2726 1.691337 CCGGACACCCCCTAATCCA 60.691 63.158 0.00 0.00 0.00 3.41
2717 2727 0.767060 ATCCGGACACCCCCTAATCC 60.767 60.000 6.12 0.00 0.00 3.01
2718 2728 0.396811 CATCCGGACACCCCCTAATC 59.603 60.000 6.12 0.00 0.00 1.75
2719 2729 1.060163 CCATCCGGACACCCCCTAAT 61.060 60.000 6.12 0.00 0.00 1.73
2720 2730 1.691337 CCATCCGGACACCCCCTAA 60.691 63.158 6.12 0.00 0.00 2.69
2721 2731 2.041301 CCATCCGGACACCCCCTA 60.041 66.667 6.12 0.00 0.00 3.53
2725 2735 4.489771 CTGGCCATCCGGACACCC 62.490 72.222 6.12 7.82 46.52 4.61
2726 2736 3.399181 TCTGGCCATCCGGACACC 61.399 66.667 6.12 9.58 46.52 4.16
2727 2737 2.125106 GTCTGGCCATCCGGACAC 60.125 66.667 6.12 0.00 46.52 3.67
2730 2740 1.629043 GTATAGTCTGGCCATCCGGA 58.371 55.000 6.61 6.61 45.32 5.14
2731 2741 0.608640 GGTATAGTCTGGCCATCCGG 59.391 60.000 5.51 0.00 40.23 5.14
2732 2742 1.633774 AGGTATAGTCTGGCCATCCG 58.366 55.000 5.51 0.00 34.14 4.18
2733 2743 2.972713 TGAAGGTATAGTCTGGCCATCC 59.027 50.000 5.51 0.00 0.00 3.51
2734 2744 3.556004 GCTGAAGGTATAGTCTGGCCATC 60.556 52.174 5.51 2.35 0.00 3.51
2735 2745 2.370189 GCTGAAGGTATAGTCTGGCCAT 59.630 50.000 5.51 0.00 0.00 4.40
2736 2746 1.762957 GCTGAAGGTATAGTCTGGCCA 59.237 52.381 4.71 4.71 0.00 5.36
2737 2747 1.070914 GGCTGAAGGTATAGTCTGGCC 59.929 57.143 0.00 0.00 33.77 5.36
2738 2748 1.269831 CGGCTGAAGGTATAGTCTGGC 60.270 57.143 0.00 0.00 35.68 4.85
2739 2749 1.341531 CCGGCTGAAGGTATAGTCTGG 59.658 57.143 0.00 0.00 0.00 3.86
2740 2750 2.034812 GTCCGGCTGAAGGTATAGTCTG 59.965 54.545 0.00 0.00 0.00 3.51
2741 2751 2.091775 AGTCCGGCTGAAGGTATAGTCT 60.092 50.000 0.00 0.00 0.00 3.24
2742 2752 2.293955 GAGTCCGGCTGAAGGTATAGTC 59.706 54.545 0.00 0.00 0.00 2.59
2743 2753 2.308690 GAGTCCGGCTGAAGGTATAGT 58.691 52.381 0.00 0.00 0.00 2.12
2744 2754 1.614413 GGAGTCCGGCTGAAGGTATAG 59.386 57.143 0.00 0.00 0.00 1.31
2745 2755 1.217183 AGGAGTCCGGCTGAAGGTATA 59.783 52.381 2.76 0.00 0.00 1.47
2746 2756 0.032017 AGGAGTCCGGCTGAAGGTAT 60.032 55.000 2.76 0.00 0.00 2.73
2747 2757 0.970937 CAGGAGTCCGGCTGAAGGTA 60.971 60.000 2.76 0.00 0.00 3.08
2748 2758 2.120718 AGGAGTCCGGCTGAAGGT 59.879 61.111 2.76 0.00 0.00 3.50
2749 2759 2.581354 CAGGAGTCCGGCTGAAGG 59.419 66.667 2.76 0.00 0.00 3.46
2750 2760 1.984570 TCCAGGAGTCCGGCTGAAG 60.985 63.158 13.40 0.00 0.00 3.02
2751 2761 2.119611 TCCAGGAGTCCGGCTGAA 59.880 61.111 13.40 0.00 0.00 3.02
2752 2762 1.859841 TAGTCCAGGAGTCCGGCTGA 61.860 60.000 13.40 0.44 0.00 4.26
2753 2763 0.757188 ATAGTCCAGGAGTCCGGCTG 60.757 60.000 13.40 0.00 0.00 4.85
2754 2764 0.757188 CATAGTCCAGGAGTCCGGCT 60.757 60.000 13.40 14.60 0.00 5.52
2755 2765 0.755698 TCATAGTCCAGGAGTCCGGC 60.756 60.000 13.40 9.57 0.00 6.13
2756 2766 1.683917 CTTCATAGTCCAGGAGTCCGG 59.316 57.143 12.34 12.34 0.00 5.14
2757 2767 2.656002 TCTTCATAGTCCAGGAGTCCG 58.344 52.381 0.00 0.00 0.00 4.79
2758 2768 4.651503 TGAATCTTCATAGTCCAGGAGTCC 59.348 45.833 0.00 0.00 31.01 3.85
2759 2769 5.860941 TGAATCTTCATAGTCCAGGAGTC 57.139 43.478 0.00 0.00 31.01 3.36
2760 2770 5.960811 TCTTGAATCTTCATAGTCCAGGAGT 59.039 40.000 1.29 1.29 37.00 3.85
2761 2771 6.477053 TCTTGAATCTTCATAGTCCAGGAG 57.523 41.667 0.00 0.00 37.00 3.69
2762 2772 7.126268 TCAATCTTGAATCTTCATAGTCCAGGA 59.874 37.037 0.00 0.00 37.00 3.86
2763 2773 7.278135 TCAATCTTGAATCTTCATAGTCCAGG 58.722 38.462 0.00 0.00 37.00 4.45
2764 2774 8.728337 TTCAATCTTGAATCTTCATAGTCCAG 57.272 34.615 1.28 0.00 41.88 3.86
2765 2775 8.542926 TCTTCAATCTTGAATCTTCATAGTCCA 58.457 33.333 5.86 0.00 45.26 4.02
2766 2776 8.825745 GTCTTCAATCTTGAATCTTCATAGTCC 58.174 37.037 5.86 0.00 45.26 3.85
2767 2777 9.598517 AGTCTTCAATCTTGAATCTTCATAGTC 57.401 33.333 5.86 0.00 45.26 2.59
2768 2778 9.956640 AAGTCTTCAATCTTGAATCTTCATAGT 57.043 29.630 5.86 0.00 45.26 2.12
2770 2780 9.091784 CGAAGTCTTCAATCTTGAATCTTCATA 57.908 33.333 26.97 4.96 45.31 2.15
2771 2781 7.605691 ACGAAGTCTTCAATCTTGAATCTTCAT 59.394 33.333 26.97 19.67 45.31 2.57
2772 2782 6.931281 ACGAAGTCTTCAATCTTGAATCTTCA 59.069 34.615 26.97 0.00 45.31 3.02
2773 2783 7.357951 ACGAAGTCTTCAATCTTGAATCTTC 57.642 36.000 23.08 23.08 45.26 2.87
2807 2817 0.960861 CGCCAAGGAAAGTCCCTTCC 60.961 60.000 0.00 0.00 44.30 3.46
2808 2818 0.250770 ACGCCAAGGAAAGTCCCTTC 60.251 55.000 0.00 0.00 44.30 3.46
2809 2819 0.537371 CACGCCAAGGAAAGTCCCTT 60.537 55.000 0.00 0.00 46.91 3.95
2810 2820 1.073199 CACGCCAAGGAAAGTCCCT 59.927 57.895 0.00 0.00 37.19 4.20
2811 2821 1.971695 CCACGCCAAGGAAAGTCCC 60.972 63.158 0.00 0.00 37.19 4.46
2812 2822 0.536460 TTCCACGCCAAGGAAAGTCC 60.536 55.000 0.00 0.00 41.94 3.85
2813 2823 0.875059 CTTCCACGCCAAGGAAAGTC 59.125 55.000 0.00 0.00 44.07 3.01
2814 2824 0.537371 CCTTCCACGCCAAGGAAAGT 60.537 55.000 2.12 0.00 44.07 2.66
2815 2825 1.866853 GCCTTCCACGCCAAGGAAAG 61.867 60.000 10.97 2.24 44.07 2.62
2816 2826 1.901464 GCCTTCCACGCCAAGGAAA 60.901 57.895 10.97 0.00 44.07 3.13
2817 2827 2.282180 GCCTTCCACGCCAAGGAA 60.282 61.111 10.97 5.63 42.94 3.36
2818 2828 3.126703 TTGCCTTCCACGCCAAGGA 62.127 57.895 10.97 0.00 42.94 3.36
2819 2829 2.597217 TTGCCTTCCACGCCAAGG 60.597 61.111 3.73 3.73 43.13 3.61
2820 2830 2.956987 CTTGCCTTCCACGCCAAG 59.043 61.111 0.00 0.00 0.00 3.61
2821 2831 3.294493 GCTTGCCTTCCACGCCAA 61.294 61.111 0.00 0.00 32.93 4.52
2822 2832 3.790416 AAGCTTGCCTTCCACGCCA 62.790 57.895 0.00 0.00 39.36 5.69
2823 2833 2.985847 AAGCTTGCCTTCCACGCC 60.986 61.111 0.00 0.00 39.36 5.68
2824 2834 2.256461 CAAGCTTGCCTTCCACGC 59.744 61.111 14.65 0.00 38.87 5.34
2825 2835 2.956987 CCAAGCTTGCCTTCCACG 59.043 61.111 21.43 0.62 0.00 4.94
2826 2836 2.653115 GCCAAGCTTGCCTTCCAC 59.347 61.111 21.43 0.12 0.00 4.02
2827 2837 2.769652 ATCGCCAAGCTTGCCTTCCA 62.770 55.000 21.43 1.33 0.00 3.53
2828 2838 0.748005 TATCGCCAAGCTTGCCTTCC 60.748 55.000 21.43 5.26 0.00 3.46
2829 2839 1.002033 CATATCGCCAAGCTTGCCTTC 60.002 52.381 21.43 8.32 0.00 3.46
2830 2840 1.027357 CATATCGCCAAGCTTGCCTT 58.973 50.000 21.43 7.68 0.00 4.35
2831 2841 0.820891 CCATATCGCCAAGCTTGCCT 60.821 55.000 21.43 7.17 0.00 4.75
2832 2842 0.819259 TCCATATCGCCAAGCTTGCC 60.819 55.000 21.43 9.45 0.00 4.52
2833 2843 1.242076 ATCCATATCGCCAAGCTTGC 58.758 50.000 21.43 14.85 0.00 4.01
2834 2844 3.181503 GCATATCCATATCGCCAAGCTTG 60.182 47.826 19.93 19.93 0.00 4.01
2835 2845 3.012518 GCATATCCATATCGCCAAGCTT 58.987 45.455 0.00 0.00 0.00 3.74
2836 2846 2.026915 TGCATATCCATATCGCCAAGCT 60.027 45.455 0.00 0.00 0.00 3.74
2837 2847 2.353889 CTGCATATCCATATCGCCAAGC 59.646 50.000 0.00 0.00 0.00 4.01
2838 2848 3.865446 TCTGCATATCCATATCGCCAAG 58.135 45.455 0.00 0.00 0.00 3.61
2839 2849 3.979101 TCTGCATATCCATATCGCCAA 57.021 42.857 0.00 0.00 0.00 4.52
2840 2850 3.708121 AGATCTGCATATCCATATCGCCA 59.292 43.478 8.37 0.00 0.00 5.69
2841 2851 4.305769 GAGATCTGCATATCCATATCGCC 58.694 47.826 0.00 0.00 0.00 5.54
2842 2852 4.039004 AGGAGATCTGCATATCCATATCGC 59.961 45.833 17.24 0.00 42.26 4.58
2843 2853 5.787953 AGGAGATCTGCATATCCATATCG 57.212 43.478 17.24 0.00 42.26 2.92
2844 2854 6.552725 TGGTAGGAGATCTGCATATCCATATC 59.447 42.308 17.24 0.00 42.26 1.63
2845 2855 6.447326 TGGTAGGAGATCTGCATATCCATAT 58.553 40.000 17.24 0.00 42.26 1.78
2846 2856 5.842339 TGGTAGGAGATCTGCATATCCATA 58.158 41.667 17.24 0.00 42.26 2.74
2847 2857 4.692328 TGGTAGGAGATCTGCATATCCAT 58.308 43.478 17.24 0.00 42.26 3.41
2848 2858 4.132122 TGGTAGGAGATCTGCATATCCA 57.868 45.455 17.24 14.50 42.26 3.41
2849 2859 5.046014 ACAATGGTAGGAGATCTGCATATCC 60.046 44.000 17.24 12.30 40.35 2.59
2850 2860 6.047511 ACAATGGTAGGAGATCTGCATATC 57.952 41.667 17.24 3.95 0.00 1.63
2851 2861 7.390027 GTTACAATGGTAGGAGATCTGCATAT 58.610 38.462 17.24 0.00 0.00 1.78
2852 2862 6.239600 GGTTACAATGGTAGGAGATCTGCATA 60.240 42.308 17.24 3.40 0.00 3.14
2853 2863 5.455326 GGTTACAATGGTAGGAGATCTGCAT 60.455 44.000 17.24 4.37 0.00 3.96
2854 2864 4.141711 GGTTACAATGGTAGGAGATCTGCA 60.142 45.833 17.24 0.00 0.00 4.41
2855 2865 4.381411 GGTTACAATGGTAGGAGATCTGC 58.619 47.826 6.03 6.03 0.00 4.26
2856 2866 4.341235 TCGGTTACAATGGTAGGAGATCTG 59.659 45.833 0.00 0.00 0.00 2.90
2857 2867 4.341520 GTCGGTTACAATGGTAGGAGATCT 59.658 45.833 0.00 0.00 0.00 2.75
2858 2868 4.341520 AGTCGGTTACAATGGTAGGAGATC 59.658 45.833 0.00 0.00 0.00 2.75
2859 2869 4.287552 AGTCGGTTACAATGGTAGGAGAT 58.712 43.478 0.00 0.00 0.00 2.75
2860 2870 3.705051 AGTCGGTTACAATGGTAGGAGA 58.295 45.455 0.00 0.00 0.00 3.71
2861 2871 4.467198 AAGTCGGTTACAATGGTAGGAG 57.533 45.455 0.00 0.00 0.00 3.69
2862 2872 4.040706 ACAAAGTCGGTTACAATGGTAGGA 59.959 41.667 0.00 0.00 0.00 2.94
2863 2873 4.153475 CACAAAGTCGGTTACAATGGTAGG 59.847 45.833 0.00 0.00 0.00 3.18
2864 2874 4.753107 ACACAAAGTCGGTTACAATGGTAG 59.247 41.667 0.00 0.00 0.00 3.18
2865 2875 4.706035 ACACAAAGTCGGTTACAATGGTA 58.294 39.130 0.00 0.00 0.00 3.25
2866 2876 3.547746 ACACAAAGTCGGTTACAATGGT 58.452 40.909 0.00 0.00 0.00 3.55
2867 2877 5.445845 GTTACACAAAGTCGGTTACAATGG 58.554 41.667 0.00 0.00 0.00 3.16
2868 2878 5.445845 GGTTACACAAAGTCGGTTACAATG 58.554 41.667 0.00 0.00 0.00 2.82
2869 2879 4.516321 GGGTTACACAAAGTCGGTTACAAT 59.484 41.667 0.00 0.00 0.00 2.71
2870 2880 3.876320 GGGTTACACAAAGTCGGTTACAA 59.124 43.478 0.00 0.00 0.00 2.41
2871 2881 3.134442 AGGGTTACACAAAGTCGGTTACA 59.866 43.478 0.00 0.00 0.00 2.41
2872 2882 3.732212 AGGGTTACACAAAGTCGGTTAC 58.268 45.455 0.00 0.00 0.00 2.50
2873 2883 5.296748 GTTAGGGTTACACAAAGTCGGTTA 58.703 41.667 0.00 0.00 0.00 2.85
2874 2884 4.129380 GTTAGGGTTACACAAAGTCGGTT 58.871 43.478 0.00 0.00 0.00 4.44
2875 2885 3.494924 GGTTAGGGTTACACAAAGTCGGT 60.495 47.826 0.00 0.00 0.00 4.69
2876 2886 3.069289 GGTTAGGGTTACACAAAGTCGG 58.931 50.000 0.00 0.00 0.00 4.79
2877 2887 3.069289 GGGTTAGGGTTACACAAAGTCG 58.931 50.000 0.00 0.00 0.00 4.18
2878 2888 4.041321 AGAGGGTTAGGGTTACACAAAGTC 59.959 45.833 0.00 0.00 0.00 3.01
2879 2889 3.978672 AGAGGGTTAGGGTTACACAAAGT 59.021 43.478 0.00 0.00 0.00 2.66
2880 2890 4.576879 GAGAGGGTTAGGGTTACACAAAG 58.423 47.826 0.00 0.00 0.00 2.77
2881 2891 4.628963 GAGAGGGTTAGGGTTACACAAA 57.371 45.455 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.