Multiple sequence alignment - TraesCS7A01G224700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G224700 chr7A 100.000 3248 0 0 1504 4751 194168696 194171943 0.000000e+00 5999
1 TraesCS7A01G224700 chr7A 98.308 1891 21 6 2862 4751 46728502 46726622 0.000000e+00 3304
2 TraesCS7A01G224700 chr7A 100.000 1448 0 0 1 1448 194167193 194168640 0.000000e+00 2675
3 TraesCS7A01G224700 chr7A 97.202 1501 27 6 3254 4751 98751761 98753249 0.000000e+00 2525
4 TraesCS7A01G224700 chr7A 99.409 1353 7 1 1508 2859 119787296 119788648 0.000000e+00 2453
5 TraesCS7A01G224700 chr7A 99.189 1357 10 1 1504 2859 736541924 736543280 0.000000e+00 2444
6 TraesCS7A01G224700 chr7A 98.143 1346 24 1 1 1346 7421833 7423177 0.000000e+00 2346
7 TraesCS7A01G224700 chr7A 97.994 1346 26 1 1 1346 46729832 46728488 0.000000e+00 2335
8 TraesCS7A01G224700 chr7A 97.503 921 22 1 2862 3781 7423163 7424083 0.000000e+00 1572
9 TraesCS7A01G224700 chr7A 98.718 624 8 0 1 624 98751144 98751767 0.000000e+00 1109
10 TraesCS7A01G224700 chr7A 99.165 479 4 0 4273 4751 46764561 46764083 0.000000e+00 863
11 TraesCS7A01G224700 chr7A 85.761 611 66 10 3953 4547 7424255 7424860 1.120000e-175 627
12 TraesCS7A01G224700 chr7A 97.436 78 2 0 1371 1448 736541921 736541998 2.980000e-27 134
13 TraesCS7A01G224700 chr7A 98.667 75 0 1 1375 1448 194168696 194168770 1.070000e-26 132
14 TraesCS7A01G224700 chr5A 98.413 1890 27 2 2862 4751 41483537 41481651 0.000000e+00 3321
15 TraesCS7A01G224700 chr5A 98.291 1346 21 1 1 1346 41484866 41483523 0.000000e+00 2357
16 TraesCS7A01G224700 chr7D 93.700 1762 78 14 2861 4592 321477422 321479180 0.000000e+00 2608
17 TraesCS7A01G224700 chr7D 94.937 158 8 0 4594 4751 321479218 321479375 1.020000e-61 248
18 TraesCS7A01G224700 chr1B 99.485 1360 6 1 1504 2862 661568908 661570267 0.000000e+00 2471
19 TraesCS7A01G224700 chr1B 98.821 1357 14 2 1504 2859 623108870 623107515 0.000000e+00 2416
20 TraesCS7A01G224700 chr1B 97.845 1346 29 0 1 1346 59040159 59041504 0.000000e+00 2326
21 TraesCS7A01G224700 chr1B 97.609 920 22 0 2862 3781 59041490 59042409 0.000000e+00 1578
22 TraesCS7A01G224700 chr1B 85.131 612 69 11 3953 4547 626237727 626237121 1.460000e-169 606
23 TraesCS7A01G224700 chr1B 98.734 158 2 0 4594 4751 673721610 673721453 1.010000e-71 281
24 TraesCS7A01G224700 chr1B 88.034 117 11 3 3812 3927 87742765 87742651 8.290000e-28 135
25 TraesCS7A01G224700 chr4B 99.268 1367 9 1 1504 2869 54039407 54040773 0.000000e+00 2468
26 TraesCS7A01G224700 chr4B 96.807 783 25 0 3014 3796 141440384 141439602 0.000000e+00 1308
27 TraesCS7A01G224700 chr4B 98.667 75 0 1 1375 1448 54039407 54039481 1.070000e-26 132
28 TraesCS7A01G224700 chr6B 99.339 1361 8 1 1504 2863 337940595 337939235 0.000000e+00 2462
29 TraesCS7A01G224700 chr6B 98.824 1360 14 2 1504 2862 698981236 698979878 0.000000e+00 2422
30 TraesCS7A01G224700 chr6B 97.727 1364 28 3 1504 2865 601871765 601870403 0.000000e+00 2344
31 TraesCS7A01G224700 chr6B 97.468 79 1 1 1371 1448 698981240 698981162 2.980000e-27 134
32 TraesCS7A01G224700 chr6B 98.667 75 0 1 1375 1448 337940595 337940521 1.070000e-26 132
33 TraesCS7A01G224700 chr5B 99.043 1358 11 2 1505 2861 42257070 42258426 0.000000e+00 2435
34 TraesCS7A01G224700 chr5B 97.623 1346 32 0 1 1346 457391273 457389928 0.000000e+00 2309
35 TraesCS7A01G224700 chr5B 96.808 1347 42 1 1 1346 493911231 493912577 0.000000e+00 2248
36 TraesCS7A01G224700 chr5B 96.471 935 32 1 2862 3796 457389942 457389009 0.000000e+00 1543
37 TraesCS7A01G224700 chr5B 85.597 611 67 11 3953 4547 48320622 48321227 5.220000e-174 621
38 TraesCS7A01G224700 chr5B 85.458 612 67 12 3953 4547 457388852 457388246 6.760000e-173 617
39 TraesCS7A01G224700 chr3B 98.366 1346 22 0 1 1346 784063672 784062327 0.000000e+00 2364
40 TraesCS7A01G224700 chr3B 97.968 935 19 0 2862 3796 784062341 784061407 0.000000e+00 1622
41 TraesCS7A01G224700 chr3B 85.106 611 70 11 3953 4547 784061250 784060645 5.260000e-169 604
42 TraesCS7A01G224700 chr4A 98.293 1347 22 1 1 1346 626535098 626533752 0.000000e+00 2359
43 TraesCS7A01G224700 chr4A 97.647 935 21 1 2862 3796 626533766 626532833 0.000000e+00 1604
44 TraesCS7A01G224700 chr4A 85.270 611 69 10 3953 4547 626532676 626532071 1.130000e-170 610
45 TraesCS7A01G224700 chr1A 91.466 914 73 5 434 1346 570926182 570927091 0.000000e+00 1251
46 TraesCS7A01G224700 chr1A 98.667 75 0 1 1375 1448 560176228 560176154 1.070000e-26 132
47 TraesCS7A01G224700 chr5D 85.761 611 65 13 3953 4547 500934243 500934847 1.120000e-175 627
48 TraesCS7A01G224700 chr6A 97.368 190 5 0 4562 4751 181904850 181905039 1.650000e-84 324
49 TraesCS7A01G224700 chrUn 97.468 158 4 0 4594 4751 86827077 86826920 2.180000e-68 270
50 TraesCS7A01G224700 chrUn 98.667 75 0 1 1375 1448 420015853 420015927 1.070000e-26 132
51 TraesCS7A01G224700 chr2A 84.564 149 16 3 4601 4749 410272250 410272391 1.780000e-29 141
52 TraesCS7A01G224700 chr2B 97.436 78 2 0 1371 1448 494167239 494167162 2.980000e-27 134
53 TraesCS7A01G224700 chr2B 98.667 75 0 1 1375 1448 494166933 494166859 1.070000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G224700 chr7A 194167193 194171943 4750 False 2935.333333 5999 99.555667 1 4751 3 chr7A.!!$F4 4750
1 TraesCS7A01G224700 chr7A 46726622 46729832 3210 True 2819.500000 3304 98.151000 1 4751 2 chr7A.!!$R2 4750
2 TraesCS7A01G224700 chr7A 119787296 119788648 1352 False 2453.000000 2453 99.409000 1508 2859 1 chr7A.!!$F1 1351
3 TraesCS7A01G224700 chr7A 98751144 98753249 2105 False 1817.000000 2525 97.960000 1 4751 2 chr7A.!!$F3 4750
4 TraesCS7A01G224700 chr7A 7421833 7424860 3027 False 1515.000000 2346 93.802333 1 4547 3 chr7A.!!$F2 4546
5 TraesCS7A01G224700 chr7A 736541921 736543280 1359 False 1289.000000 2444 98.312500 1371 2859 2 chr7A.!!$F5 1488
6 TraesCS7A01G224700 chr5A 41481651 41484866 3215 True 2839.000000 3321 98.352000 1 4751 2 chr5A.!!$R1 4750
7 TraesCS7A01G224700 chr7D 321477422 321479375 1953 False 1428.000000 2608 94.318500 2861 4751 2 chr7D.!!$F1 1890
8 TraesCS7A01G224700 chr1B 661568908 661570267 1359 False 2471.000000 2471 99.485000 1504 2862 1 chr1B.!!$F1 1358
9 TraesCS7A01G224700 chr1B 623107515 623108870 1355 True 2416.000000 2416 98.821000 1504 2859 1 chr1B.!!$R2 1355
10 TraesCS7A01G224700 chr1B 59040159 59042409 2250 False 1952.000000 2326 97.727000 1 3781 2 chr1B.!!$F2 3780
11 TraesCS7A01G224700 chr1B 626237121 626237727 606 True 606.000000 606 85.131000 3953 4547 1 chr1B.!!$R3 594
12 TraesCS7A01G224700 chr4B 141439602 141440384 782 True 1308.000000 1308 96.807000 3014 3796 1 chr4B.!!$R1 782
13 TraesCS7A01G224700 chr4B 54039407 54040773 1366 False 1300.000000 2468 98.967500 1375 2869 2 chr4B.!!$F1 1494
14 TraesCS7A01G224700 chr6B 601870403 601871765 1362 True 2344.000000 2344 97.727000 1504 2865 1 chr6B.!!$R1 1361
15 TraesCS7A01G224700 chr6B 337939235 337940595 1360 True 1297.000000 2462 99.003000 1375 2863 2 chr6B.!!$R2 1488
16 TraesCS7A01G224700 chr6B 698979878 698981240 1362 True 1278.000000 2422 98.146000 1371 2862 2 chr6B.!!$R3 1491
17 TraesCS7A01G224700 chr5B 42257070 42258426 1356 False 2435.000000 2435 99.043000 1505 2861 1 chr5B.!!$F1 1356
18 TraesCS7A01G224700 chr5B 493911231 493912577 1346 False 2248.000000 2248 96.808000 1 1346 1 chr5B.!!$F3 1345
19 TraesCS7A01G224700 chr5B 457388246 457391273 3027 True 1489.666667 2309 93.184000 1 4547 3 chr5B.!!$R1 4546
20 TraesCS7A01G224700 chr5B 48320622 48321227 605 False 621.000000 621 85.597000 3953 4547 1 chr5B.!!$F2 594
21 TraesCS7A01G224700 chr3B 784060645 784063672 3027 True 1530.000000 2364 93.813333 1 4547 3 chr3B.!!$R1 4546
22 TraesCS7A01G224700 chr4A 626532071 626535098 3027 True 1524.333333 2359 93.736667 1 4547 3 chr4A.!!$R1 4546
23 TraesCS7A01G224700 chr1A 570926182 570927091 909 False 1251.000000 1251 91.466000 434 1346 1 chr1A.!!$F1 912
24 TraesCS7A01G224700 chr5D 500934243 500934847 604 False 627.000000 627 85.761000 3953 4547 1 chr5D.!!$F1 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 243 1.154150 CCGTACCGTGGAGTTCGTC 60.154 63.158 0.00 0.0 0.00 4.20 F
369 370 4.035017 GGTGTATGGAAAATGCGATTTCG 58.965 43.478 7.64 0.0 39.64 3.46 F
1018 1022 4.275689 TCAATATGACGCAAAATAGGGCTG 59.724 41.667 0.00 0.0 0.00 4.85 F
1378 1382 0.035458 CACACACAACTCTCTCCCCC 59.965 60.000 0.00 0.0 0.00 5.40 F
2124 2130 1.296056 GCTCTGCTTCGGCGGTTTTA 61.296 55.000 7.21 0.0 46.69 1.52 F
3421 3429 3.620488 AGGAAAAAGTGTCACAGCAAGA 58.380 40.909 5.62 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 1363 0.035458 GGGGGAGAGAGTTGTGTGTG 59.965 60.000 0.0 0.0 0.00 3.82 R
1360 1364 2.453242 GGGGGAGAGAGTTGTGTGT 58.547 57.895 0.0 0.0 0.00 3.72 R
2987 2994 1.303561 GAGCACACCCAATGCCTCA 60.304 57.895 0.0 0.0 44.53 3.86 R
3325 3332 2.462456 CCGCTGTATAGATGTGGCAT 57.538 50.000 0.0 0.0 0.00 4.40 R
3542 3550 3.074412 CCGCAATCTTGAGTTGTAACCT 58.926 45.455 0.0 0.0 0.00 3.50 R
4249 4374 0.742281 CTGCTTCATGGACTCGGGTG 60.742 60.000 0.0 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
242 243 1.154150 CCGTACCGTGGAGTTCGTC 60.154 63.158 0.00 0.00 0.00 4.20
315 316 8.680903 CAAAGAACTATTCAATCTAAGGCATGT 58.319 33.333 0.00 0.00 0.00 3.21
369 370 4.035017 GGTGTATGGAAAATGCGATTTCG 58.965 43.478 7.64 0.00 39.64 3.46
1018 1022 4.275689 TCAATATGACGCAAAATAGGGCTG 59.724 41.667 0.00 0.00 0.00 4.85
1212 1216 5.048434 GGAAGCTCAGTTGAAAAAGCACTAT 60.048 40.000 0.00 0.00 37.22 2.12
1347 1351 8.940397 ATTCCTTCTAACTTTTGATTTCCTGA 57.060 30.769 0.00 0.00 0.00 3.86
1348 1352 7.745620 TCCTTCTAACTTTTGATTTCCTGAC 57.254 36.000 0.00 0.00 0.00 3.51
1349 1353 7.287061 TCCTTCTAACTTTTGATTTCCTGACA 58.713 34.615 0.00 0.00 0.00 3.58
1350 1354 7.445402 TCCTTCTAACTTTTGATTTCCTGACAG 59.555 37.037 0.00 0.00 0.00 3.51
1351 1355 7.229506 CCTTCTAACTTTTGATTTCCTGACAGT 59.770 37.037 0.93 0.00 0.00 3.55
1352 1356 9.273016 CTTCTAACTTTTGATTTCCTGACAGTA 57.727 33.333 0.93 0.00 0.00 2.74
1353 1357 8.603242 TCTAACTTTTGATTTCCTGACAGTAC 57.397 34.615 0.93 0.00 0.00 2.73
1354 1358 8.208224 TCTAACTTTTGATTTCCTGACAGTACA 58.792 33.333 0.93 0.00 0.00 2.90
1355 1359 6.619801 ACTTTTGATTTCCTGACAGTACAC 57.380 37.500 0.93 0.00 0.00 2.90
1356 1360 6.357367 ACTTTTGATTTCCTGACAGTACACT 58.643 36.000 0.93 0.00 0.00 3.55
1358 1362 5.545063 TTGATTTCCTGACAGTACACTGA 57.455 39.130 16.05 0.00 46.59 3.41
1359 1363 4.883083 TGATTTCCTGACAGTACACTGAC 58.117 43.478 16.05 10.30 46.59 3.51
1360 1364 4.343814 TGATTTCCTGACAGTACACTGACA 59.656 41.667 16.05 14.18 46.59 3.58
1361 1365 3.728076 TTCCTGACAGTACACTGACAC 57.272 47.619 16.05 7.48 46.59 3.67
1362 1366 2.661718 TCCTGACAGTACACTGACACA 58.338 47.619 16.05 11.02 46.59 3.72
1363 1367 2.361119 TCCTGACAGTACACTGACACAC 59.639 50.000 16.05 3.26 46.59 3.82
1364 1368 2.100749 CCTGACAGTACACTGACACACA 59.899 50.000 16.05 6.96 46.59 3.72
1365 1369 3.116300 CTGACAGTACACTGACACACAC 58.884 50.000 16.05 0.33 46.59 3.82
1366 1370 2.494073 TGACAGTACACTGACACACACA 59.506 45.455 16.05 2.52 46.59 3.72
1367 1371 3.056465 TGACAGTACACTGACACACACAA 60.056 43.478 16.05 0.00 46.59 3.33
1368 1372 3.259064 ACAGTACACTGACACACACAAC 58.741 45.455 16.05 0.00 46.59 3.32
1369 1373 3.056107 ACAGTACACTGACACACACAACT 60.056 43.478 16.05 0.00 46.59 3.16
1370 1374 3.551890 CAGTACACTGACACACACAACTC 59.448 47.826 3.14 0.00 46.59 3.01
1371 1375 3.447586 AGTACACTGACACACACAACTCT 59.552 43.478 0.00 0.00 0.00 3.24
1372 1376 2.893637 ACACTGACACACACAACTCTC 58.106 47.619 0.00 0.00 0.00 3.20
1373 1377 2.497675 ACACTGACACACACAACTCTCT 59.502 45.455 0.00 0.00 0.00 3.10
1374 1378 3.119291 CACTGACACACACAACTCTCTC 58.881 50.000 0.00 0.00 0.00 3.20
1375 1379 2.101582 ACTGACACACACAACTCTCTCC 59.898 50.000 0.00 0.00 0.00 3.71
1376 1380 1.412710 TGACACACACAACTCTCTCCC 59.587 52.381 0.00 0.00 0.00 4.30
1377 1381 0.759346 ACACACACAACTCTCTCCCC 59.241 55.000 0.00 0.00 0.00 4.81
1378 1382 0.035458 CACACACAACTCTCTCCCCC 59.965 60.000 0.00 0.00 0.00 5.40
1441 1445 4.847444 GCCCTCAAGCGCTCCCTC 62.847 72.222 12.06 0.00 0.00 4.30
1442 1446 4.168291 CCCTCAAGCGCTCCCTCC 62.168 72.222 12.06 0.00 0.00 4.30
1443 1447 4.168291 CCTCAAGCGCTCCCTCCC 62.168 72.222 12.06 0.00 0.00 4.30
1444 1448 4.168291 CTCAAGCGCTCCCTCCCC 62.168 72.222 12.06 0.00 0.00 4.81
1445 1449 4.722535 TCAAGCGCTCCCTCCCCT 62.723 66.667 12.06 0.00 0.00 4.79
1446 1450 4.168291 CAAGCGCTCCCTCCCCTC 62.168 72.222 12.06 0.00 0.00 4.30
2124 2130 1.296056 GCTCTGCTTCGGCGGTTTTA 61.296 55.000 7.21 0.00 46.69 1.52
3421 3429 3.620488 AGGAAAAAGTGTCACAGCAAGA 58.380 40.909 5.62 0.00 0.00 3.02
3766 3774 4.019411 TGCTCTGATCAAAGGTATTGTCCA 60.019 41.667 0.00 0.00 0.00 4.02
3922 3955 1.355381 TGGTGCTGATGTTCCAATCCT 59.645 47.619 0.00 0.00 0.00 3.24
4249 4374 2.096496 CCTTTCGCATGATTCTGTGGTC 59.904 50.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
242 243 6.480320 CCTCTACCGAAATCTTTTAGATGGTG 59.520 42.308 7.19 0.78 34.65 4.17
369 370 8.705134 GGTAATGTGTGCCAACTTTTAAAATAC 58.295 33.333 0.09 0.00 30.87 1.89
772 775 9.334947 CTCAAATGTCATCCTTACATAACTCAT 57.665 33.333 0.00 0.00 36.56 2.90
977 981 9.337396 TCATATTGAACCTATGACAATGTAACC 57.663 33.333 0.00 0.00 36.06 2.85
1018 1022 4.537135 TCTCATACCTTGTTGTCCACTC 57.463 45.455 0.00 0.00 0.00 3.51
1075 1079 3.118811 CCATTTTGGCCACGGTAATGATT 60.119 43.478 21.67 0.00 0.00 2.57
1076 1080 2.430332 CCATTTTGGCCACGGTAATGAT 59.570 45.455 21.67 0.10 0.00 2.45
1341 1345 3.028130 TGTGTCAGTGTACTGTCAGGAA 58.972 45.455 11.27 0.43 41.30 3.36
1342 1346 2.361119 GTGTGTCAGTGTACTGTCAGGA 59.639 50.000 11.27 0.00 41.30 3.86
1343 1347 2.100749 TGTGTGTCAGTGTACTGTCAGG 59.899 50.000 11.27 0.00 41.30 3.86
1344 1348 3.116300 GTGTGTGTCAGTGTACTGTCAG 58.884 50.000 11.27 0.00 41.30 3.51
1345 1349 2.494073 TGTGTGTGTCAGTGTACTGTCA 59.506 45.455 11.44 9.48 44.12 3.58
1346 1350 3.159353 TGTGTGTGTCAGTGTACTGTC 57.841 47.619 11.44 7.06 44.12 3.51
1347 1351 3.056107 AGTTGTGTGTGTCAGTGTACTGT 60.056 43.478 11.44 0.00 44.12 3.55
1348 1352 3.521560 AGTTGTGTGTGTCAGTGTACTG 58.478 45.455 5.67 5.67 45.08 2.74
1349 1353 3.447586 AGAGTTGTGTGTGTCAGTGTACT 59.552 43.478 0.00 0.00 0.00 2.73
1350 1354 3.782046 AGAGTTGTGTGTGTCAGTGTAC 58.218 45.455 0.00 0.00 0.00 2.90
1351 1355 3.699538 AGAGAGTTGTGTGTGTCAGTGTA 59.300 43.478 0.00 0.00 0.00 2.90
1352 1356 2.497675 AGAGAGTTGTGTGTGTCAGTGT 59.502 45.455 0.00 0.00 0.00 3.55
1353 1357 3.119291 GAGAGAGTTGTGTGTGTCAGTG 58.881 50.000 0.00 0.00 0.00 3.66
1354 1358 2.101582 GGAGAGAGTTGTGTGTGTCAGT 59.898 50.000 0.00 0.00 0.00 3.41
1355 1359 2.546795 GGGAGAGAGTTGTGTGTGTCAG 60.547 54.545 0.00 0.00 0.00 3.51
1356 1360 1.412710 GGGAGAGAGTTGTGTGTGTCA 59.587 52.381 0.00 0.00 0.00 3.58
1357 1361 1.270358 GGGGAGAGAGTTGTGTGTGTC 60.270 57.143 0.00 0.00 0.00 3.67
1358 1362 0.759346 GGGGAGAGAGTTGTGTGTGT 59.241 55.000 0.00 0.00 0.00 3.72
1359 1363 0.035458 GGGGGAGAGAGTTGTGTGTG 59.965 60.000 0.00 0.00 0.00 3.82
1360 1364 2.453242 GGGGGAGAGAGTTGTGTGT 58.547 57.895 0.00 0.00 0.00 3.72
1425 1429 4.168291 GGAGGGAGCGCTTGAGGG 62.168 72.222 13.26 0.00 0.00 4.30
1426 1430 4.168291 GGGAGGGAGCGCTTGAGG 62.168 72.222 13.26 0.00 0.00 3.86
1427 1431 4.168291 GGGGAGGGAGCGCTTGAG 62.168 72.222 13.26 0.00 0.00 3.02
1428 1432 4.722535 AGGGGAGGGAGCGCTTGA 62.723 66.667 13.26 0.00 0.00 3.02
1429 1433 4.168291 GAGGGGAGGGAGCGCTTG 62.168 72.222 13.26 0.00 0.00 4.01
2124 2130 2.539081 GGCCCAAGACCAGAACCCT 61.539 63.158 0.00 0.00 0.00 4.34
2162 2168 4.560743 TGTCAGCGCAGGCCAACA 62.561 61.111 11.47 0.00 41.24 3.33
2987 2994 1.303561 GAGCACACCCAATGCCTCA 60.304 57.895 0.00 0.00 44.53 3.86
3325 3332 2.462456 CCGCTGTATAGATGTGGCAT 57.538 50.000 0.00 0.00 0.00 4.40
3421 3429 6.705825 GCATTCTGTAATTGAGGGTTGTTTTT 59.294 34.615 0.00 0.00 0.00 1.94
3542 3550 3.074412 CCGCAATCTTGAGTTGTAACCT 58.926 45.455 0.00 0.00 0.00 3.50
3766 3774 5.193679 ACCTAGCGAAAATAAAAGGAGCAT 58.806 37.500 0.00 0.00 0.00 3.79
3866 3899 5.240891 TGAAGCTGAGACCATTTGTAGAAG 58.759 41.667 0.00 0.00 0.00 2.85
3922 3955 9.851686 ATGTCTAGAATATTATGTTGCAAAGGA 57.148 29.630 0.00 0.00 0.00 3.36
4249 4374 0.742281 CTGCTTCATGGACTCGGGTG 60.742 60.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.