Multiple sequence alignment - TraesCS7A01G223800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G223800 chr7A 100.000 4798 0 0 1 4798 192959563 192964360 0.000000e+00 8861.0
1 TraesCS7A01G223800 chr7B 92.706 1796 97 18 2609 4385 327636418 327638198 0.000000e+00 2560.0
2 TraesCS7A01G223800 chr7B 92.363 1401 63 22 1237 2617 327634439 327635815 0.000000e+00 1954.0
3 TraesCS7A01G223800 chr7D 93.476 1686 84 16 2477 4152 185201646 185203315 0.000000e+00 2481.0
4 TraesCS7A01G223800 chr7D 92.006 1276 60 20 1237 2488 185200052 185201309 0.000000e+00 1753.0
5 TraesCS7A01G223800 chr7D 90.506 316 17 6 4483 4798 185203644 185203946 5.780000e-109 405.0
6 TraesCS7A01G223800 chr7D 87.097 186 9 3 4150 4322 185203403 185203586 3.790000e-46 196.0
7 TraesCS7A01G223800 chr7D 95.918 49 2 0 4372 4420 185203587 185203635 3.980000e-11 80.5
8 TraesCS7A01G223800 chr4D 87.891 768 89 2 288 1055 164981839 164981076 0.000000e+00 900.0
9 TraesCS7A01G223800 chr4D 94.702 151 8 0 1088 1238 164906094 164905944 8.030000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G223800 chr7A 192959563 192964360 4797 False 8861.0 8861 100.0000 1 4798 1 chr7A.!!$F1 4797
1 TraesCS7A01G223800 chr7B 327634439 327638198 3759 False 2257.0 2560 92.5345 1237 4385 2 chr7B.!!$F1 3148
2 TraesCS7A01G223800 chr7D 185200052 185203946 3894 False 983.1 2481 91.8006 1237 4798 5 chr7D.!!$F1 3561
3 TraesCS7A01G223800 chr4D 164981076 164981839 763 True 900.0 900 87.8910 288 1055 1 chr4D.!!$R2 767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 0.030908 GTCTCTTCCCGCGAGTATGG 59.969 60.0 8.23 0.0 0.00 2.74 F
259 260 0.034896 GACAAGAAGGGTCAGGCGAA 59.965 55.0 0.00 0.0 35.36 4.70 F
1119 1120 0.029834 TATTCGAACTCGCCGTAGCC 59.970 55.0 0.00 0.0 39.60 3.93 F
1182 1183 0.032678 CGGGGAGATCGGATGAAGTG 59.967 60.0 0.00 0.0 0.00 3.16 F
1205 1206 0.108138 GTCATTGAGACGGTCCCTGG 60.108 60.0 4.14 0.0 37.53 4.45 F
1224 1225 0.108233 GTGGCCTGAGAGCTGAAGAG 60.108 60.0 3.32 0.0 0.00 2.85 F
1479 1484 0.586319 GCGCTTGTGCAACTTGAGTA 59.414 50.0 0.00 0.0 39.64 2.59 F
1663 1677 2.037511 CCCTGTGTTCCTACCGTGTTAA 59.962 50.0 0.00 0.0 0.00 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1100 1101 0.029834 GGCTACGGCGAGTTCGAATA 59.970 55.000 16.62 0.00 43.02 1.75 R
1163 1164 0.032678 CACTTCATCCGATCTCCCCG 59.967 60.000 0.00 0.00 0.00 5.73 R
3082 4083 1.305930 GGACATCGGGTTGAAGTGCC 61.306 60.000 0.00 0.00 31.34 5.01 R
3271 4273 6.101332 TGCAAAATCAATATTCTCAACTGCC 58.899 36.000 0.00 0.00 0.00 4.85 R
3277 4279 6.497437 CACCGATGCAAAATCAATATTCTCA 58.503 36.000 0.00 0.00 0.00 3.27 R
3494 4496 8.347062 AGGTAACCTACTTCTGAGAACAGAACA 61.347 40.741 8.32 0.63 43.65 3.18 R
3527 4529 0.035317 CTGTGCTGTTGCCCTCTACA 59.965 55.000 0.00 0.00 38.71 2.74 R
3888 4891 1.413118 TCCTGTCAGTCAGCTGTTCA 58.587 50.000 14.67 6.29 43.05 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.473520 CGGGTAGCTGTGGCCCAG 62.474 72.222 14.87 14.87 42.44 4.45
18 19 3.330720 GGGTAGCTGTGGCCCAGT 61.331 66.667 18.80 10.56 43.55 4.00
19 20 1.993391 GGGTAGCTGTGGCCCAGTA 60.993 63.158 18.80 9.81 43.55 2.74
20 21 1.522569 GGTAGCTGTGGCCCAGTAG 59.477 63.158 18.80 5.85 43.55 2.57
21 22 1.522569 GTAGCTGTGGCCCAGTAGG 59.477 63.158 18.80 0.00 43.55 3.18
22 23 0.976073 GTAGCTGTGGCCCAGTAGGA 60.976 60.000 18.80 3.79 43.55 2.94
23 24 0.687757 TAGCTGTGGCCCAGTAGGAG 60.688 60.000 18.80 0.00 43.55 3.69
24 25 2.294078 GCTGTGGCCCAGTAGGAGT 61.294 63.158 18.80 0.00 43.55 3.85
25 26 1.842381 GCTGTGGCCCAGTAGGAGTT 61.842 60.000 18.80 0.00 43.55 3.01
26 27 0.036010 CTGTGGCCCAGTAGGAGTTG 60.036 60.000 0.00 0.00 38.24 3.16
27 28 0.766674 TGTGGCCCAGTAGGAGTTGT 60.767 55.000 0.00 0.00 38.24 3.32
28 29 0.321653 GTGGCCCAGTAGGAGTTGTG 60.322 60.000 0.00 0.00 38.24 3.33
29 30 1.377333 GGCCCAGTAGGAGTTGTGC 60.377 63.158 0.00 0.00 38.24 4.57
30 31 1.679898 GCCCAGTAGGAGTTGTGCT 59.320 57.895 0.00 0.00 38.24 4.40
31 32 0.391793 GCCCAGTAGGAGTTGTGCTC 60.392 60.000 0.00 0.00 43.39 4.26
32 33 0.108615 CCCAGTAGGAGTTGTGCTCG 60.109 60.000 0.00 0.00 45.03 5.03
33 34 0.888619 CCAGTAGGAGTTGTGCTCGA 59.111 55.000 0.00 0.00 45.03 4.04
34 35 1.402984 CCAGTAGGAGTTGTGCTCGAC 60.403 57.143 0.00 0.00 45.03 4.20
35 36 1.269723 CAGTAGGAGTTGTGCTCGACA 59.730 52.381 8.78 0.00 45.03 4.35
36 37 1.542030 AGTAGGAGTTGTGCTCGACAG 59.458 52.381 8.78 0.00 45.03 3.51
37 38 0.243907 TAGGAGTTGTGCTCGACAGC 59.756 55.000 8.78 0.00 45.03 4.40
39 40 4.663444 AGTTGTGCTCGACAGCTC 57.337 55.556 8.78 0.00 42.04 4.09
40 41 2.045280 AGTTGTGCTCGACAGCTCT 58.955 52.632 8.78 0.00 42.04 4.09
41 42 0.390860 AGTTGTGCTCGACAGCTCTT 59.609 50.000 8.78 0.00 42.04 2.85
42 43 1.871408 AGTTGTGCTCGACAGCTCTTG 60.871 52.381 8.78 0.00 42.04 3.02
45 46 2.973899 GCTCGACAGCTCTTGGGA 59.026 61.111 0.00 0.00 43.09 4.37
46 47 1.519719 GCTCGACAGCTCTTGGGAT 59.480 57.895 0.00 0.00 43.09 3.85
47 48 0.809241 GCTCGACAGCTCTTGGGATG 60.809 60.000 0.00 0.00 43.09 3.51
48 49 0.179089 CTCGACAGCTCTTGGGATGG 60.179 60.000 0.00 0.00 0.00 3.51
49 50 0.614697 TCGACAGCTCTTGGGATGGA 60.615 55.000 0.00 0.00 0.00 3.41
50 51 0.467384 CGACAGCTCTTGGGATGGAT 59.533 55.000 0.00 0.00 0.00 3.41
51 52 1.134280 CGACAGCTCTTGGGATGGATT 60.134 52.381 0.00 0.00 0.00 3.01
52 53 2.295885 GACAGCTCTTGGGATGGATTG 58.704 52.381 0.00 0.00 0.00 2.67
53 54 1.637553 ACAGCTCTTGGGATGGATTGT 59.362 47.619 0.00 0.00 0.00 2.71
54 55 2.042162 ACAGCTCTTGGGATGGATTGTT 59.958 45.455 0.00 0.00 0.00 2.83
55 56 2.426024 CAGCTCTTGGGATGGATTGTTG 59.574 50.000 0.00 0.00 0.00 3.33
56 57 1.753073 GCTCTTGGGATGGATTGTTGG 59.247 52.381 0.00 0.00 0.00 3.77
57 58 1.753073 CTCTTGGGATGGATTGTTGGC 59.247 52.381 0.00 0.00 0.00 4.52
58 59 0.457035 CTTGGGATGGATTGTTGGCG 59.543 55.000 0.00 0.00 0.00 5.69
59 60 1.603236 TTGGGATGGATTGTTGGCGC 61.603 55.000 0.00 0.00 0.00 6.53
60 61 2.785425 GGGATGGATTGTTGGCGCC 61.785 63.158 22.73 22.73 0.00 6.53
61 62 2.408835 GATGGATTGTTGGCGCCG 59.591 61.111 23.90 0.00 0.00 6.46
62 63 3.756413 GATGGATTGTTGGCGCCGC 62.756 63.158 23.90 17.91 0.00 6.53
64 65 4.481112 GGATTGTTGGCGCCGCTG 62.481 66.667 23.90 0.00 0.00 5.18
65 66 4.481112 GATTGTTGGCGCCGCTGG 62.481 66.667 23.90 0.00 0.00 4.85
86 87 4.427661 GCACGAGCGCCTCTCTGT 62.428 66.667 2.29 0.00 39.70 3.41
87 88 2.202544 CACGAGCGCCTCTCTGTC 60.203 66.667 2.29 0.00 39.70 3.51
88 89 3.444805 ACGAGCGCCTCTCTGTCC 61.445 66.667 2.29 0.00 39.70 4.02
89 90 4.544689 CGAGCGCCTCTCTGTCCG 62.545 72.222 2.29 0.00 39.70 4.79
90 91 3.444805 GAGCGCCTCTCTGTCCGT 61.445 66.667 2.29 0.00 38.78 4.69
91 92 2.992114 AGCGCCTCTCTGTCCGTT 60.992 61.111 2.29 0.00 0.00 4.44
92 93 2.811317 GCGCCTCTCTGTCCGTTG 60.811 66.667 0.00 0.00 0.00 4.10
93 94 2.811317 CGCCTCTCTGTCCGTTGC 60.811 66.667 0.00 0.00 0.00 4.17
94 95 2.811317 GCCTCTCTGTCCGTTGCG 60.811 66.667 0.00 0.00 0.00 4.85
124 125 4.612412 GTTGGCGTGGACCGGTCA 62.612 66.667 34.40 18.59 36.94 4.02
125 126 3.862991 TTGGCGTGGACCGGTCAA 61.863 61.111 34.40 23.48 36.94 3.18
126 127 4.612412 TGGCGTGGACCGGTCAAC 62.612 66.667 34.40 31.85 36.94 3.18
127 128 4.612412 GGCGTGGACCGGTCAACA 62.612 66.667 35.49 23.34 33.09 3.33
128 129 3.343421 GCGTGGACCGGTCAACAC 61.343 66.667 35.49 30.21 33.09 3.32
129 130 2.107343 CGTGGACCGGTCAACACA 59.893 61.111 35.49 22.31 33.09 3.72
130 131 1.954146 CGTGGACCGGTCAACACAG 60.954 63.158 35.49 24.01 33.09 3.66
131 132 1.597027 GTGGACCGGTCAACACAGG 60.597 63.158 33.09 0.00 43.25 4.00
132 133 1.762858 TGGACCGGTCAACACAGGA 60.763 57.895 34.40 5.89 40.18 3.86
133 134 1.004918 GGACCGGTCAACACAGGAG 60.005 63.158 34.40 0.00 40.18 3.69
134 135 1.469335 GGACCGGTCAACACAGGAGA 61.469 60.000 34.40 0.00 40.18 3.71
135 136 0.038159 GACCGGTCAACACAGGAGAG 60.038 60.000 29.75 0.00 40.18 3.20
136 137 1.374758 CCGGTCAACACAGGAGAGC 60.375 63.158 0.00 0.00 40.18 4.09
137 138 1.367471 CGGTCAACACAGGAGAGCA 59.633 57.895 0.00 0.00 0.00 4.26
138 139 0.668706 CGGTCAACACAGGAGAGCAG 60.669 60.000 0.00 0.00 0.00 4.24
139 140 0.952984 GGTCAACACAGGAGAGCAGC 60.953 60.000 0.00 0.00 0.00 5.25
140 141 0.952984 GTCAACACAGGAGAGCAGCC 60.953 60.000 0.00 0.00 0.00 4.85
141 142 1.673665 CAACACAGGAGAGCAGCCC 60.674 63.158 0.00 0.00 0.00 5.19
142 143 2.900106 AACACAGGAGAGCAGCCCC 61.900 63.158 0.00 0.00 0.00 5.80
143 144 3.324930 CACAGGAGAGCAGCCCCA 61.325 66.667 0.00 0.00 0.00 4.96
144 145 3.325753 ACAGGAGAGCAGCCCCAC 61.326 66.667 0.00 0.00 0.00 4.61
145 146 4.106925 CAGGAGAGCAGCCCCACC 62.107 72.222 0.00 0.00 0.00 4.61
146 147 4.345286 AGGAGAGCAGCCCCACCT 62.345 66.667 0.00 0.00 0.00 4.00
147 148 3.791586 GGAGAGCAGCCCCACCTC 61.792 72.222 0.00 0.00 0.00 3.85
148 149 4.154347 GAGAGCAGCCCCACCTCG 62.154 72.222 0.00 0.00 0.00 4.63
149 150 4.704103 AGAGCAGCCCCACCTCGA 62.704 66.667 0.00 0.00 0.00 4.04
150 151 4.154347 GAGCAGCCCCACCTCGAG 62.154 72.222 5.13 5.13 0.00 4.04
161 162 2.903357 CCTCGAGGGTGGATGTGG 59.097 66.667 24.62 0.00 0.00 4.17
162 163 2.735772 CCTCGAGGGTGGATGTGGG 61.736 68.421 24.62 0.00 0.00 4.61
163 164 1.990060 CTCGAGGGTGGATGTGGGT 60.990 63.158 3.91 0.00 0.00 4.51
164 165 2.244117 CTCGAGGGTGGATGTGGGTG 62.244 65.000 3.91 0.00 0.00 4.61
165 166 2.290287 CGAGGGTGGATGTGGGTGA 61.290 63.158 0.00 0.00 0.00 4.02
166 167 1.836999 CGAGGGTGGATGTGGGTGAA 61.837 60.000 0.00 0.00 0.00 3.18
167 168 0.625849 GAGGGTGGATGTGGGTGAAT 59.374 55.000 0.00 0.00 0.00 2.57
168 169 0.625849 AGGGTGGATGTGGGTGAATC 59.374 55.000 0.00 0.00 0.00 2.52
169 170 0.748005 GGGTGGATGTGGGTGAATCG 60.748 60.000 0.00 0.00 0.00 3.34
170 171 1.376609 GGTGGATGTGGGTGAATCGC 61.377 60.000 0.00 0.00 0.00 4.58
171 172 1.077787 TGGATGTGGGTGAATCGCC 60.078 57.895 3.84 3.84 0.00 5.54
172 173 1.077787 GGATGTGGGTGAATCGCCA 60.078 57.895 15.39 0.00 35.42 5.69
173 174 1.376609 GGATGTGGGTGAATCGCCAC 61.377 60.000 15.39 11.07 37.66 5.01
174 175 0.392998 GATGTGGGTGAATCGCCACT 60.393 55.000 15.39 0.00 37.86 4.00
175 176 0.038166 ATGTGGGTGAATCGCCACTT 59.962 50.000 15.39 6.59 37.86 3.16
176 177 0.179004 TGTGGGTGAATCGCCACTTT 60.179 50.000 15.39 0.00 37.86 2.66
177 178 0.240945 GTGGGTGAATCGCCACTTTG 59.759 55.000 15.39 0.00 37.24 2.77
178 179 1.212751 GGGTGAATCGCCACTTTGC 59.787 57.895 15.39 0.00 37.24 3.68
179 180 1.212751 GGTGAATCGCCACTTTGCC 59.787 57.895 8.15 0.00 37.24 4.52
180 181 1.212751 GTGAATCGCCACTTTGCCC 59.787 57.895 0.00 0.00 34.38 5.36
181 182 1.976474 TGAATCGCCACTTTGCCCC 60.976 57.895 0.00 0.00 0.00 5.80
182 183 3.051392 GAATCGCCACTTTGCCCCG 62.051 63.158 0.00 0.00 0.00 5.73
183 184 3.561120 AATCGCCACTTTGCCCCGA 62.561 57.895 0.00 0.00 0.00 5.14
186 187 2.909965 GCCACTTTGCCCCGACAA 60.910 61.111 0.00 0.00 0.00 3.18
187 188 2.919494 GCCACTTTGCCCCGACAAG 61.919 63.158 0.00 0.00 0.00 3.16
188 189 2.268076 CCACTTTGCCCCGACAAGG 61.268 63.158 0.00 0.00 40.63 3.61
199 200 4.070552 GACAAGGCCGGCGTCTCT 62.071 66.667 23.85 9.94 0.00 3.10
200 201 3.591254 GACAAGGCCGGCGTCTCTT 62.591 63.158 23.85 16.01 0.00 2.85
201 202 2.815647 CAAGGCCGGCGTCTCTTC 60.816 66.667 23.85 5.13 0.00 2.87
202 203 4.083862 AAGGCCGGCGTCTCTTCC 62.084 66.667 23.85 4.27 0.00 3.46
209 210 4.117661 GCGTCTCTTCCCGCGAGT 62.118 66.667 8.23 0.00 40.56 4.18
210 211 2.758089 GCGTCTCTTCCCGCGAGTA 61.758 63.158 8.23 0.00 40.56 2.59
211 212 2.023318 CGTCTCTTCCCGCGAGTAT 58.977 57.895 8.23 0.00 0.00 2.12
212 213 0.317103 CGTCTCTTCCCGCGAGTATG 60.317 60.000 8.23 0.00 0.00 2.39
213 214 0.030908 GTCTCTTCCCGCGAGTATGG 59.969 60.000 8.23 0.00 0.00 2.74
214 215 1.300233 CTCTTCCCGCGAGTATGGC 60.300 63.158 8.23 0.00 36.02 4.40
215 216 2.016393 CTCTTCCCGCGAGTATGGCA 62.016 60.000 8.23 0.00 41.24 4.92
216 217 1.883084 CTTCCCGCGAGTATGGCAC 60.883 63.158 8.23 0.00 41.24 5.01
217 218 3.379865 TTCCCGCGAGTATGGCACC 62.380 63.158 8.23 0.00 41.24 5.01
218 219 3.849951 CCCGCGAGTATGGCACCT 61.850 66.667 8.23 0.00 41.24 4.00
219 220 2.279517 CCGCGAGTATGGCACCTC 60.280 66.667 8.23 6.04 41.24 3.85
220 221 2.655364 CGCGAGTATGGCACCTCG 60.655 66.667 25.61 25.61 41.24 4.63
222 223 2.808315 CGAGTATGGCACCTCGCT 59.192 61.111 20.84 2.29 41.91 4.93
223 224 1.299468 CGAGTATGGCACCTCGCTC 60.299 63.158 20.84 9.56 41.91 5.03
224 225 1.816537 GAGTATGGCACCTCGCTCA 59.183 57.895 0.00 0.00 41.91 4.26
225 226 0.249238 GAGTATGGCACCTCGCTCAG 60.249 60.000 0.00 0.00 41.91 3.35
226 227 1.884926 GTATGGCACCTCGCTCAGC 60.885 63.158 0.00 0.00 41.91 4.26
227 228 2.358372 TATGGCACCTCGCTCAGCA 61.358 57.895 0.00 0.00 41.91 4.41
228 229 2.578163 TATGGCACCTCGCTCAGCAC 62.578 60.000 0.00 0.00 41.91 4.40
238 239 4.767255 CTCAGCACGGCCAGGTCC 62.767 72.222 2.24 0.00 0.00 4.46
246 247 3.319198 GGCCAGGTCCCGACAAGA 61.319 66.667 0.00 0.00 0.00 3.02
247 248 2.747686 GCCAGGTCCCGACAAGAA 59.252 61.111 0.00 0.00 0.00 2.52
248 249 1.376037 GCCAGGTCCCGACAAGAAG 60.376 63.158 0.00 0.00 0.00 2.85
249 250 1.296715 CCAGGTCCCGACAAGAAGG 59.703 63.158 0.00 0.00 0.00 3.46
255 256 1.296715 CCCGACAAGAAGGGTCAGG 59.703 63.158 0.00 0.00 42.67 3.86
256 257 1.376037 CCGACAAGAAGGGTCAGGC 60.376 63.158 0.00 0.00 34.97 4.85
257 258 1.738099 CGACAAGAAGGGTCAGGCG 60.738 63.158 0.00 0.00 34.97 5.52
258 259 1.671742 GACAAGAAGGGTCAGGCGA 59.328 57.895 0.00 0.00 35.36 5.54
259 260 0.034896 GACAAGAAGGGTCAGGCGAA 59.965 55.000 0.00 0.00 35.36 4.70
260 261 0.250338 ACAAGAAGGGTCAGGCGAAC 60.250 55.000 0.00 0.00 0.00 3.95
261 262 0.035458 CAAGAAGGGTCAGGCGAACT 59.965 55.000 0.00 0.00 0.00 3.01
262 263 1.275291 CAAGAAGGGTCAGGCGAACTA 59.725 52.381 0.00 0.00 0.00 2.24
263 264 1.187087 AGAAGGGTCAGGCGAACTAG 58.813 55.000 0.00 0.00 0.00 2.57
264 265 1.183549 GAAGGGTCAGGCGAACTAGA 58.816 55.000 0.00 0.00 0.00 2.43
265 266 1.549170 GAAGGGTCAGGCGAACTAGAA 59.451 52.381 0.00 0.00 0.00 2.10
266 267 0.896226 AGGGTCAGGCGAACTAGAAC 59.104 55.000 0.00 0.00 0.00 3.01
267 268 0.896226 GGGTCAGGCGAACTAGAACT 59.104 55.000 0.00 0.00 0.00 3.01
268 269 1.275573 GGGTCAGGCGAACTAGAACTT 59.724 52.381 0.00 0.00 0.00 2.66
269 270 2.289506 GGGTCAGGCGAACTAGAACTTT 60.290 50.000 0.00 0.00 0.00 2.66
270 271 2.737252 GGTCAGGCGAACTAGAACTTTG 59.263 50.000 0.00 0.00 0.00 2.77
271 272 2.737252 GTCAGGCGAACTAGAACTTTGG 59.263 50.000 0.00 0.00 0.00 3.28
272 273 1.464997 CAGGCGAACTAGAACTTTGGC 59.535 52.381 0.00 0.00 0.00 4.52
273 274 0.803117 GGCGAACTAGAACTTTGGCC 59.197 55.000 0.00 0.00 39.10 5.36
274 275 1.519408 GCGAACTAGAACTTTGGCCA 58.481 50.000 0.00 0.00 0.00 5.36
275 276 1.464997 GCGAACTAGAACTTTGGCCAG 59.535 52.381 5.11 0.00 0.00 4.85
276 277 1.464997 CGAACTAGAACTTTGGCCAGC 59.535 52.381 5.11 0.00 0.00 4.85
277 278 2.504367 GAACTAGAACTTTGGCCAGCA 58.496 47.619 5.11 0.00 0.00 4.41
278 279 2.191128 ACTAGAACTTTGGCCAGCAG 57.809 50.000 5.11 9.16 0.00 4.24
279 280 1.271597 ACTAGAACTTTGGCCAGCAGG 60.272 52.381 16.39 2.20 38.23 4.85
280 281 1.003580 CTAGAACTTTGGCCAGCAGGA 59.996 52.381 16.39 0.00 36.89 3.86
281 282 0.407139 AGAACTTTGGCCAGCAGGAT 59.593 50.000 16.39 6.63 36.89 3.24
282 283 0.813821 GAACTTTGGCCAGCAGGATC 59.186 55.000 16.39 11.01 36.89 3.36
283 284 0.962356 AACTTTGGCCAGCAGGATCG 60.962 55.000 16.39 0.00 36.89 3.69
284 285 1.377725 CTTTGGCCAGCAGGATCGT 60.378 57.895 5.11 0.00 36.89 3.73
285 286 0.962356 CTTTGGCCAGCAGGATCGTT 60.962 55.000 5.11 0.00 36.89 3.85
286 287 0.960364 TTTGGCCAGCAGGATCGTTC 60.960 55.000 5.11 0.00 36.89 3.95
291 292 3.470888 AGCAGGATCGTTCCCGGG 61.471 66.667 16.85 16.85 43.76 5.73
363 364 4.899239 CGCAGGGGAGTCGCCATC 62.899 72.222 26.56 16.26 39.05 3.51
408 409 3.099524 CGATAGAGCCATCGTCAGC 57.900 57.895 5.13 0.00 42.22 4.26
410 411 0.312416 GATAGAGCCATCGTCAGCGT 59.688 55.000 0.00 0.00 39.49 5.07
491 492 2.786495 CGATGACGAGGGTGAGGGG 61.786 68.421 0.00 0.00 42.66 4.79
492 493 3.083997 ATGACGAGGGTGAGGGGC 61.084 66.667 0.00 0.00 0.00 5.80
532 533 1.959085 CAGCATGCCGTTTCTGGTT 59.041 52.632 15.66 0.00 0.00 3.67
535 536 1.523154 GCATGCCGTTTCTGGTTGGA 61.523 55.000 6.36 0.00 0.00 3.53
537 538 1.133025 CATGCCGTTTCTGGTTGGATC 59.867 52.381 0.00 0.00 0.00 3.36
547 548 0.986019 TGGTTGGATCTATGGGCGGT 60.986 55.000 0.00 0.00 0.00 5.68
548 549 0.182775 GGTTGGATCTATGGGCGGTT 59.817 55.000 0.00 0.00 0.00 4.44
633 634 4.811761 GTTGCCGACGCGCCAATC 62.812 66.667 5.73 0.00 38.08 2.67
706 707 3.179265 CTACGCTTGCGGTCGTGG 61.179 66.667 19.19 1.11 39.46 4.94
769 770 1.665916 ATCATCGGCGCCTTGATCG 60.666 57.895 26.96 14.12 0.00 3.69
786 787 4.778143 GCGACCATGCCCCTCGTT 62.778 66.667 0.00 0.00 0.00 3.85
796 797 2.742372 CCCTCGTTTGGAGCCACG 60.742 66.667 0.00 0.00 41.71 4.94
798 799 2.357517 CTCGTTTGGAGCCACGCT 60.358 61.111 0.00 0.00 43.88 5.07
811 812 1.589993 CACGCTCGTAGGCCTGATG 60.590 63.158 17.99 4.77 0.00 3.07
816 817 1.604185 GCTCGTAGGCCTGATGATCAC 60.604 57.143 17.99 1.82 0.00 3.06
818 819 2.298446 CTCGTAGGCCTGATGATCACAT 59.702 50.000 17.99 0.00 39.67 3.21
826 827 3.521995 GATGATCACATCGCGGGAT 57.478 52.632 9.50 9.50 42.45 3.85
869 870 1.021390 AAGCGTCCTGATGAAAGGCG 61.021 55.000 0.00 0.00 38.82 5.52
872 873 1.699656 CGTCCTGATGAAAGGCGCAG 61.700 60.000 10.83 0.00 37.24 5.18
910 911 0.248702 GGACTTGCTCGACGATCTCC 60.249 60.000 0.00 0.00 0.00 3.71
942 943 3.309582 ACGGATGTCGGCAGGATT 58.690 55.556 0.00 0.00 44.45 3.01
1005 1006 2.187946 GCGAGTGTGGGGATGGAG 59.812 66.667 0.00 0.00 0.00 3.86
1016 1017 4.055654 GATGGAGGCGCTCAATCC 57.944 61.111 7.64 10.81 35.49 3.01
1025 1026 1.930908 GCGCTCAATCCAGCAGCTTT 61.931 55.000 0.00 0.00 39.62 3.51
1041 1042 1.200948 GCTTTGTCCAAGGATGTGCTC 59.799 52.381 0.00 0.00 32.37 4.26
1045 1046 2.046023 CCAAGGATGTGCTCGGCA 60.046 61.111 0.00 0.00 35.60 5.69
1057 1058 2.801421 TCGGCAGTCGAGAGATGC 59.199 61.111 0.00 3.85 43.74 3.91
1060 1061 4.100981 GCAGTCGAGAGATGCCAC 57.899 61.111 0.00 0.00 45.19 5.01
1061 1062 1.875813 GCAGTCGAGAGATGCCACG 60.876 63.158 0.00 0.00 45.19 4.94
1062 1063 1.875813 CAGTCGAGAGATGCCACGC 60.876 63.158 0.00 0.00 45.19 5.34
1063 1064 2.583593 GTCGAGAGATGCCACGCC 60.584 66.667 0.00 0.00 45.19 5.68
1064 1065 2.755876 TCGAGAGATGCCACGCCT 60.756 61.111 0.00 0.00 33.31 5.52
1065 1066 2.584418 CGAGAGATGCCACGCCTG 60.584 66.667 0.00 0.00 0.00 4.85
1066 1067 2.202987 GAGAGATGCCACGCCTGG 60.203 66.667 0.00 0.00 41.13 4.45
1067 1068 3.746949 GAGAGATGCCACGCCTGGG 62.747 68.421 3.79 0.00 38.13 4.45
1080 1081 2.588877 CTGGGCAGGAATACCGCG 60.589 66.667 0.00 0.00 41.83 6.46
1081 1082 4.169696 TGGGCAGGAATACCGCGG 62.170 66.667 26.86 26.86 41.83 6.46
1082 1083 3.857038 GGGCAGGAATACCGCGGA 61.857 66.667 35.90 16.57 41.83 5.54
1083 1084 2.280186 GGCAGGAATACCGCGGAG 60.280 66.667 35.90 6.46 41.83 4.63
1106 1107 4.684265 GCTCGACGCTGTATTCGA 57.316 55.556 0.00 0.00 41.83 3.71
1107 1108 2.939782 GCTCGACGCTGTATTCGAA 58.060 52.632 0.00 0.00 43.35 3.71
1108 1109 0.566593 GCTCGACGCTGTATTCGAAC 59.433 55.000 0.00 0.00 43.35 3.95
1109 1110 1.794437 GCTCGACGCTGTATTCGAACT 60.794 52.381 0.00 0.00 43.35 3.01
1110 1111 2.102633 CTCGACGCTGTATTCGAACTC 58.897 52.381 0.00 0.00 43.35 3.01
1111 1112 0.832030 CGACGCTGTATTCGAACTCG 59.168 55.000 0.00 2.45 37.43 4.18
1112 1113 0.566593 GACGCTGTATTCGAACTCGC 59.433 55.000 0.00 0.00 39.60 5.03
1113 1114 0.801067 ACGCTGTATTCGAACTCGCC 60.801 55.000 0.00 0.00 39.60 5.54
1114 1115 1.798368 CGCTGTATTCGAACTCGCCG 61.798 60.000 0.00 0.00 39.60 6.46
1115 1116 0.801067 GCTGTATTCGAACTCGCCGT 60.801 55.000 0.00 0.00 39.60 5.68
1116 1117 1.532505 GCTGTATTCGAACTCGCCGTA 60.533 52.381 0.00 0.00 39.60 4.02
1117 1118 2.373269 CTGTATTCGAACTCGCCGTAG 58.627 52.381 0.00 0.00 39.60 3.51
1118 1119 1.118833 GTATTCGAACTCGCCGTAGC 58.881 55.000 0.00 0.00 39.60 3.58
1119 1120 0.029834 TATTCGAACTCGCCGTAGCC 59.970 55.000 0.00 0.00 39.60 3.93
1120 1121 2.931713 ATTCGAACTCGCCGTAGCCG 62.932 60.000 0.00 0.00 39.60 5.52
1130 1131 4.569023 CGTAGCCGGCATGAGCGA 62.569 66.667 31.54 0.79 43.41 4.93
1131 1132 2.659897 GTAGCCGGCATGAGCGAG 60.660 66.667 31.54 0.00 43.41 5.03
1132 1133 4.592192 TAGCCGGCATGAGCGAGC 62.592 66.667 31.54 0.00 43.41 5.03
1135 1136 2.106938 CCGGCATGAGCGAGCTTA 59.893 61.111 0.00 0.00 43.41 3.09
1136 1137 2.240500 CCGGCATGAGCGAGCTTAC 61.241 63.158 0.00 0.00 43.41 2.34
1137 1138 1.227089 CGGCATGAGCGAGCTTACT 60.227 57.895 0.00 0.00 43.41 2.24
1138 1139 1.211818 CGGCATGAGCGAGCTTACTC 61.212 60.000 9.41 9.41 43.41 2.59
1139 1140 0.878086 GGCATGAGCGAGCTTACTCC 60.878 60.000 12.80 0.00 43.41 3.85
1140 1141 0.179100 GCATGAGCGAGCTTACTCCA 60.179 55.000 12.80 0.00 40.03 3.86
1141 1142 1.740380 GCATGAGCGAGCTTACTCCAA 60.740 52.381 12.80 0.00 40.03 3.53
1142 1143 2.200067 CATGAGCGAGCTTACTCCAAG 58.800 52.381 12.80 1.78 40.03 3.61
1143 1144 0.532573 TGAGCGAGCTTACTCCAAGG 59.467 55.000 12.80 0.00 40.03 3.61
1144 1145 0.179097 GAGCGAGCTTACTCCAAGGG 60.179 60.000 0.00 0.00 40.03 3.95
1145 1146 1.815840 GCGAGCTTACTCCAAGGGC 60.816 63.158 0.00 0.00 40.03 5.19
1146 1147 1.519455 CGAGCTTACTCCAAGGGCG 60.519 63.158 0.00 0.00 40.03 6.13
1147 1148 1.898154 GAGCTTACTCCAAGGGCGA 59.102 57.895 0.00 0.00 36.90 5.54
1148 1149 0.249398 GAGCTTACTCCAAGGGCGAA 59.751 55.000 0.00 0.00 36.90 4.70
1149 1150 0.912486 AGCTTACTCCAAGGGCGAAT 59.088 50.000 0.00 0.00 34.56 3.34
1150 1151 1.134371 AGCTTACTCCAAGGGCGAATC 60.134 52.381 0.00 0.00 34.56 2.52
1151 1152 1.571919 CTTACTCCAAGGGCGAATCG 58.428 55.000 0.00 0.00 0.00 3.34
1152 1153 1.136305 CTTACTCCAAGGGCGAATCGA 59.864 52.381 6.91 0.00 0.00 3.59
1153 1154 1.187974 TACTCCAAGGGCGAATCGAA 58.812 50.000 6.91 0.00 0.00 3.71
1154 1155 0.323629 ACTCCAAGGGCGAATCGAAA 59.676 50.000 6.91 0.00 0.00 3.46
1155 1156 1.009829 CTCCAAGGGCGAATCGAAAG 58.990 55.000 6.91 0.00 0.00 2.62
1156 1157 0.392461 TCCAAGGGCGAATCGAAAGG 60.392 55.000 6.91 0.10 0.00 3.11
1157 1158 1.376609 CCAAGGGCGAATCGAAAGGG 61.377 60.000 6.91 0.00 0.00 3.95
1158 1159 0.392461 CAAGGGCGAATCGAAAGGGA 60.392 55.000 6.91 0.00 0.00 4.20
1159 1160 0.107654 AAGGGCGAATCGAAAGGGAG 60.108 55.000 6.91 0.00 0.00 4.30
1160 1161 0.976073 AGGGCGAATCGAAAGGGAGA 60.976 55.000 6.91 0.00 0.00 3.71
1161 1162 0.107848 GGGCGAATCGAAAGGGAGAA 60.108 55.000 6.91 0.00 0.00 2.87
1162 1163 1.291132 GGCGAATCGAAAGGGAGAAG 58.709 55.000 6.91 0.00 0.00 2.85
1163 1164 0.653114 GCGAATCGAAAGGGAGAAGC 59.347 55.000 6.91 0.00 0.00 3.86
1164 1165 0.924090 CGAATCGAAAGGGAGAAGCG 59.076 55.000 0.00 0.00 0.00 4.68
1165 1166 1.291132 GAATCGAAAGGGAGAAGCGG 58.709 55.000 0.00 0.00 0.00 5.52
1166 1167 0.107654 AATCGAAAGGGAGAAGCGGG 60.108 55.000 0.00 0.00 0.00 6.13
1167 1168 1.972660 ATCGAAAGGGAGAAGCGGGG 61.973 60.000 0.00 0.00 0.00 5.73
1168 1169 2.656069 CGAAAGGGAGAAGCGGGGA 61.656 63.158 0.00 0.00 0.00 4.81
1169 1170 1.222113 GAAAGGGAGAAGCGGGGAG 59.778 63.158 0.00 0.00 0.00 4.30
1170 1171 1.229529 AAAGGGAGAAGCGGGGAGA 60.230 57.895 0.00 0.00 0.00 3.71
1171 1172 0.621862 AAAGGGAGAAGCGGGGAGAT 60.622 55.000 0.00 0.00 0.00 2.75
1172 1173 1.051556 AAGGGAGAAGCGGGGAGATC 61.052 60.000 0.00 0.00 0.00 2.75
1173 1174 2.731374 GGAGAAGCGGGGAGATCG 59.269 66.667 0.00 0.00 0.00 3.69
1174 1175 2.731374 GAGAAGCGGGGAGATCGG 59.269 66.667 0.00 0.00 0.00 4.18
1175 1176 1.828660 GAGAAGCGGGGAGATCGGA 60.829 63.158 0.00 0.00 0.00 4.55
1176 1177 1.152440 AGAAGCGGGGAGATCGGAT 60.152 57.895 0.00 0.00 0.00 4.18
1177 1178 1.005630 GAAGCGGGGAGATCGGATG 60.006 63.158 0.00 0.00 0.00 3.51
1178 1179 1.457643 AAGCGGGGAGATCGGATGA 60.458 57.895 0.00 0.00 0.00 2.92
1179 1180 1.048724 AAGCGGGGAGATCGGATGAA 61.049 55.000 0.00 0.00 0.00 2.57
1180 1181 1.005630 GCGGGGAGATCGGATGAAG 60.006 63.158 0.00 0.00 0.00 3.02
1181 1182 1.749334 GCGGGGAGATCGGATGAAGT 61.749 60.000 0.00 0.00 0.00 3.01
1182 1183 0.032678 CGGGGAGATCGGATGAAGTG 59.967 60.000 0.00 0.00 0.00 3.16
1183 1184 0.394565 GGGGAGATCGGATGAAGTGG 59.605 60.000 0.00 0.00 0.00 4.00
1184 1185 1.123928 GGGAGATCGGATGAAGTGGT 58.876 55.000 0.00 0.00 0.00 4.16
1185 1186 1.069358 GGGAGATCGGATGAAGTGGTC 59.931 57.143 0.00 0.00 0.00 4.02
1186 1187 1.269309 GGAGATCGGATGAAGTGGTCG 60.269 57.143 0.00 0.00 0.00 4.79
1187 1188 1.405821 GAGATCGGATGAAGTGGTCGT 59.594 52.381 0.00 0.00 0.00 4.34
1188 1189 1.405821 AGATCGGATGAAGTGGTCGTC 59.594 52.381 0.00 0.00 41.02 4.20
1189 1190 1.134367 GATCGGATGAAGTGGTCGTCA 59.866 52.381 0.00 0.00 43.20 4.35
1190 1191 1.182667 TCGGATGAAGTGGTCGTCAT 58.817 50.000 0.00 0.00 43.20 3.06
1191 1192 1.548719 TCGGATGAAGTGGTCGTCATT 59.451 47.619 0.00 0.00 43.20 2.57
1192 1193 1.660607 CGGATGAAGTGGTCGTCATTG 59.339 52.381 0.00 0.00 43.20 2.82
1193 1194 2.673893 CGGATGAAGTGGTCGTCATTGA 60.674 50.000 0.00 0.00 43.20 2.57
1194 1195 2.932614 GGATGAAGTGGTCGTCATTGAG 59.067 50.000 0.00 0.00 43.20 3.02
1195 1196 3.368427 GGATGAAGTGGTCGTCATTGAGA 60.368 47.826 0.00 0.00 43.20 3.27
1196 1197 3.026630 TGAAGTGGTCGTCATTGAGAC 57.973 47.619 7.37 7.37 44.02 3.36
1204 1205 3.442996 GTCATTGAGACGGTCCCTG 57.557 57.895 4.14 0.00 37.53 4.45
1205 1206 0.108138 GTCATTGAGACGGTCCCTGG 60.108 60.000 4.14 0.00 37.53 4.45
1206 1207 0.544357 TCATTGAGACGGTCCCTGGT 60.544 55.000 4.14 0.00 0.00 4.00
1207 1208 0.391661 CATTGAGACGGTCCCTGGTG 60.392 60.000 4.14 0.00 0.00 4.17
1208 1209 1.553690 ATTGAGACGGTCCCTGGTGG 61.554 60.000 4.14 0.00 0.00 4.61
1209 1210 4.083862 GAGACGGTCCCTGGTGGC 62.084 72.222 4.14 0.00 0.00 5.01
1214 1215 3.721706 GGTCCCTGGTGGCCTGAG 61.722 72.222 3.32 0.00 0.00 3.35
1215 1216 2.607750 GTCCCTGGTGGCCTGAGA 60.608 66.667 3.32 0.00 0.00 3.27
1216 1217 2.284921 TCCCTGGTGGCCTGAGAG 60.285 66.667 3.32 0.00 0.00 3.20
1217 1218 4.106925 CCCTGGTGGCCTGAGAGC 62.107 72.222 3.32 0.00 0.00 4.09
1218 1219 3.007920 CCTGGTGGCCTGAGAGCT 61.008 66.667 3.32 0.00 0.00 4.09
1219 1220 2.268280 CTGGTGGCCTGAGAGCTG 59.732 66.667 3.32 0.00 0.00 4.24
1220 1221 2.203832 TGGTGGCCTGAGAGCTGA 60.204 61.111 3.32 0.00 0.00 4.26
1221 1222 1.834856 CTGGTGGCCTGAGAGCTGAA 61.835 60.000 3.32 0.00 0.00 3.02
1222 1223 1.078567 GGTGGCCTGAGAGCTGAAG 60.079 63.158 3.32 0.00 0.00 3.02
1223 1224 1.548357 GGTGGCCTGAGAGCTGAAGA 61.548 60.000 3.32 0.00 0.00 2.87
1224 1225 0.108233 GTGGCCTGAGAGCTGAAGAG 60.108 60.000 3.32 0.00 0.00 2.85
1225 1226 1.263342 TGGCCTGAGAGCTGAAGAGG 61.263 60.000 3.32 0.00 0.00 3.69
1226 1227 0.975040 GGCCTGAGAGCTGAAGAGGA 60.975 60.000 0.00 0.00 0.00 3.71
1227 1228 1.122227 GCCTGAGAGCTGAAGAGGAT 58.878 55.000 0.00 0.00 0.00 3.24
1228 1229 1.069049 GCCTGAGAGCTGAAGAGGATC 59.931 57.143 0.00 0.00 0.00 3.36
1229 1230 2.386779 CCTGAGAGCTGAAGAGGATCA 58.613 52.381 0.00 0.00 37.82 2.92
1231 1232 2.363038 CTGAGAGCTGAAGAGGATCAGG 59.637 54.545 0.00 0.00 45.60 3.86
1232 1233 2.024560 TGAGAGCTGAAGAGGATCAGGA 60.025 50.000 0.00 0.00 45.60 3.86
1233 1234 3.030291 GAGAGCTGAAGAGGATCAGGAA 58.970 50.000 0.00 0.00 45.60 3.36
1234 1235 3.448934 AGAGCTGAAGAGGATCAGGAAA 58.551 45.455 0.00 0.00 45.60 3.13
1235 1236 4.039339 AGAGCTGAAGAGGATCAGGAAAT 58.961 43.478 0.00 0.00 45.60 2.17
1264 1265 3.316308 GGCTATTTGGTCTGTTATGCCTG 59.684 47.826 0.00 0.00 35.44 4.85
1317 1320 1.792367 TCGCATCGTGAACAACTTCAG 59.208 47.619 0.00 0.00 37.06 3.02
1342 1345 6.321181 GTGCCAGGAAAGAAACAATGGATATA 59.679 38.462 0.00 0.00 0.00 0.86
1464 1469 3.502211 ACAAGTTGCTAATAGTTTGCGCT 59.498 39.130 9.73 0.00 0.00 5.92
1479 1484 0.586319 GCGCTTGTGCAACTTGAGTA 59.414 50.000 0.00 0.00 39.64 2.59
1497 1509 4.142227 TGAGTAATACCTTGCCGTTCTCTC 60.142 45.833 0.00 0.00 0.00 3.20
1522 1534 8.328758 TCACAAAATGACTAACTTATGATCCCT 58.671 33.333 0.00 0.00 29.99 4.20
1524 1536 9.614792 ACAAAATGACTAACTTATGATCCCTAC 57.385 33.333 0.00 0.00 0.00 3.18
1651 1665 3.072211 GCTTAACCTGTACCCTGTGTTC 58.928 50.000 0.00 0.00 0.00 3.18
1663 1677 2.037511 CCCTGTGTTCCTACCGTGTTAA 59.962 50.000 0.00 0.00 0.00 2.01
1707 1722 5.354234 TGCCTTCGCCTAAGAAATTCTTTAG 59.646 40.000 13.89 6.91 37.89 1.85
1763 1778 6.101332 ACACGTATCTTTTTGAAGCGGTATA 58.899 36.000 0.00 0.00 32.80 1.47
2139 2154 5.008811 CCTCGTATTTACTACTCCCTCTGTG 59.991 48.000 0.00 0.00 0.00 3.66
2158 2173 5.128827 TCTGTGTTCTTAACTGTCCTCAACT 59.871 40.000 0.00 0.00 0.00 3.16
2186 2201 5.819825 TGTGCACATAACAAGTAAACACA 57.180 34.783 17.42 0.00 33.47 3.72
2271 2286 4.407296 ACCATTTAACCTGTTCCAAAGCAA 59.593 37.500 0.00 0.00 0.00 3.91
2333 2362 5.098893 TCAATGGACAGTTGTTTTGAAACG 58.901 37.500 2.53 0.00 41.74 3.60
2422 2452 2.601367 GGTGTGCCCCACTTGCAT 60.601 61.111 0.00 0.00 43.94 3.96
2474 2504 6.947464 TCTTACCTTTGATGAGGACTTTAGG 58.053 40.000 0.00 0.00 39.25 2.69
2481 2859 3.119602 TGATGAGGACTTTAGGAACGACG 60.120 47.826 0.00 0.00 0.00 5.12
2537 2915 7.125792 TGGTTTTCTCTGTAGATTATCTCCC 57.874 40.000 0.00 0.00 0.00 4.30
2642 3636 5.247564 AGGAGTGGTAAAGTGTATTGTGCTA 59.752 40.000 0.00 0.00 0.00 3.49
2674 3668 4.635765 GCCAAGTGACTAGCATGATTTACA 59.364 41.667 0.00 0.00 0.00 2.41
2741 3737 9.747898 AAATAAACAAGGGAGTAATATGTGTCA 57.252 29.630 0.00 0.00 0.00 3.58
2750 3749 5.277345 GGAGTAATATGTGTCAATTGCGACC 60.277 44.000 0.00 0.00 34.88 4.79
2839 3840 2.494870 CCAATTTTCCTTCTCTGGCCAG 59.505 50.000 27.87 27.87 0.00 4.85
2852 3853 4.460382 TCTCTGGCCAGTTTTTGATGATTC 59.540 41.667 31.58 0.00 0.00 2.52
2854 3855 4.219070 TCTGGCCAGTTTTTGATGATTCTG 59.781 41.667 31.58 1.14 0.00 3.02
2897 3898 7.771826 ACGTATTACCAACAGGCAATATTAACT 59.228 33.333 0.00 0.00 0.00 2.24
2945 3946 6.992664 AGATACTCTGATGAACCTGCTATT 57.007 37.500 0.00 0.00 0.00 1.73
3015 4016 4.361783 TGGTCCTCATCTTCAGGTAATGA 58.638 43.478 0.00 0.00 35.62 2.57
3016 4017 4.162320 TGGTCCTCATCTTCAGGTAATGAC 59.838 45.833 0.00 0.00 37.77 3.06
3017 4018 4.407296 GGTCCTCATCTTCAGGTAATGACT 59.593 45.833 0.00 0.00 37.77 3.41
3018 4019 5.104735 GGTCCTCATCTTCAGGTAATGACTT 60.105 44.000 0.00 0.00 37.77 3.01
3019 4020 6.045955 GTCCTCATCTTCAGGTAATGACTTC 58.954 44.000 0.00 0.00 37.77 3.01
3020 4021 5.721480 TCCTCATCTTCAGGTAATGACTTCA 59.279 40.000 0.00 0.00 37.77 3.02
3021 4022 6.213397 TCCTCATCTTCAGGTAATGACTTCAA 59.787 38.462 0.00 0.00 37.77 2.69
3022 4023 7.052873 CCTCATCTTCAGGTAATGACTTCAAT 58.947 38.462 0.00 0.00 37.77 2.57
3271 4273 4.101942 GCTCAGACTTCATACAGAACTCG 58.898 47.826 0.00 0.00 31.61 4.18
3277 4279 3.006967 ACTTCATACAGAACTCGGCAGTT 59.993 43.478 2.63 2.63 46.21 3.16
3362 4364 9.882996 CGATTATTTGTACAAATGTATCATGCT 57.117 29.630 33.94 14.43 40.83 3.79
3527 4529 2.840651 AGAAGTAGGTTACCTGCAGCAT 59.159 45.455 20.91 4.74 38.73 3.79
3620 4622 4.729918 AAGCTTCAGGCAGGCGGG 62.730 66.667 0.00 0.00 44.79 6.13
3647 4649 4.439289 GCTCTTATTTGGCAGTTGATGGTC 60.439 45.833 0.00 0.00 0.00 4.02
3692 4694 4.329545 TTCTCCCTGGTGGCACGC 62.330 66.667 12.17 5.35 38.67 5.34
3753 4755 2.159720 TGTCGATTGCAAATGCTGTACG 60.160 45.455 1.71 7.52 42.66 3.67
3783 4786 0.037303 AGACCCTGACTGGCAATGTG 59.963 55.000 0.00 0.00 0.00 3.21
3817 4820 6.239120 CCCTAGGAATTTTACTGCCATTGATG 60.239 42.308 11.48 0.00 0.00 3.07
3826 4829 1.321805 TGCCATTGATGCCGGGAAAG 61.322 55.000 0.00 0.00 0.00 2.62
3829 4832 1.039233 CATTGATGCCGGGAAAGCCT 61.039 55.000 0.00 0.00 0.00 4.58
3849 4852 4.791974 CCTGCTTCATCAAACAGAAACTC 58.208 43.478 0.00 0.00 31.67 3.01
3859 4862 1.772182 ACAGAAACTCGTCTTCAGCG 58.228 50.000 0.00 0.00 0.00 5.18
3888 4891 6.211584 TCTTGAACAAGACTGCCTATAGAAGT 59.788 38.462 12.40 4.55 42.06 3.01
4055 5060 3.251972 GCTAGCATTCTTTCCATAGGTGC 59.748 47.826 10.63 0.00 0.00 5.01
4106 5111 3.314635 GGCCACATGAATAGCAAGAAGAG 59.685 47.826 0.00 0.00 0.00 2.85
4175 5270 3.605486 GTGCAATTCAGTTTCAGATTCGC 59.395 43.478 0.00 0.00 0.00 4.70
4223 5318 2.772739 CGGAGCCAGGATTGAAGTG 58.227 57.895 0.00 0.00 0.00 3.16
4252 5347 4.202367 TGGGCCAATTTGTTTTTCGGTAAT 60.202 37.500 2.13 0.00 0.00 1.89
4256 5351 6.592220 GGCCAATTTGTTTTTCGGTAATATGT 59.408 34.615 0.00 0.00 0.00 2.29
4257 5352 7.118535 GGCCAATTTGTTTTTCGGTAATATGTT 59.881 33.333 0.00 0.00 0.00 2.71
4347 5459 4.790140 GCTCGACTGATAAGTTGCAAATTG 59.210 41.667 21.57 7.69 0.00 2.32
4349 5461 5.927030 TCGACTGATAAGTTGCAAATTGAC 58.073 37.500 21.57 14.75 0.00 3.18
4360 5472 2.287547 TGCAAATTGACAAGAGTTCGCC 60.288 45.455 0.00 0.00 0.00 5.54
4365 5477 0.531974 TGACAAGAGTTCGCCGCTTT 60.532 50.000 0.00 0.00 0.00 3.51
4375 5487 1.519408 TCGCCGCTTTTCTTTAGCTT 58.481 45.000 0.00 0.00 36.49 3.74
4409 5521 2.616842 AGTTTGCCAGAAACTTGTACCG 59.383 45.455 0.00 0.00 37.18 4.02
4420 5532 0.541863 CTTGTACCGCCTCCATTCCT 59.458 55.000 0.00 0.00 0.00 3.36
4422 5534 1.868713 TGTACCGCCTCCATTCCTAA 58.131 50.000 0.00 0.00 0.00 2.69
4423 5535 2.189676 TGTACCGCCTCCATTCCTAAA 58.810 47.619 0.00 0.00 0.00 1.85
4424 5536 2.775384 TGTACCGCCTCCATTCCTAAAT 59.225 45.455 0.00 0.00 0.00 1.40
4425 5537 3.968649 TGTACCGCCTCCATTCCTAAATA 59.031 43.478 0.00 0.00 0.00 1.40
4426 5538 4.595781 TGTACCGCCTCCATTCCTAAATAT 59.404 41.667 0.00 0.00 0.00 1.28
4427 5539 5.781306 TGTACCGCCTCCATTCCTAAATATA 59.219 40.000 0.00 0.00 0.00 0.86
4428 5540 5.836024 ACCGCCTCCATTCCTAAATATAA 57.164 39.130 0.00 0.00 0.00 0.98
4429 5541 5.805728 ACCGCCTCCATTCCTAAATATAAG 58.194 41.667 0.00 0.00 0.00 1.73
4430 5542 5.546499 ACCGCCTCCATTCCTAAATATAAGA 59.454 40.000 0.00 0.00 0.00 2.10
4431 5543 6.215636 ACCGCCTCCATTCCTAAATATAAGAT 59.784 38.462 0.00 0.00 0.00 2.40
4432 5544 6.540189 CCGCCTCCATTCCTAAATATAAGATG 59.460 42.308 0.00 0.00 0.00 2.90
4433 5545 7.106239 CGCCTCCATTCCTAAATATAAGATGT 58.894 38.462 0.00 0.00 0.00 3.06
4434 5546 7.607991 CGCCTCCATTCCTAAATATAAGATGTT 59.392 37.037 0.00 0.00 0.00 2.71
4435 5547 8.734386 GCCTCCATTCCTAAATATAAGATGTTG 58.266 37.037 0.00 0.00 0.00 3.33
4436 5548 9.236006 CCTCCATTCCTAAATATAAGATGTTGG 57.764 37.037 0.00 0.00 0.00 3.77
4437 5549 8.635765 TCCATTCCTAAATATAAGATGTTGGC 57.364 34.615 0.00 0.00 0.00 4.52
4438 5550 8.448008 TCCATTCCTAAATATAAGATGTTGGCT 58.552 33.333 0.00 0.00 0.00 4.75
4439 5551 8.517878 CCATTCCTAAATATAAGATGTTGGCTG 58.482 37.037 0.00 0.00 0.00 4.85
4440 5552 7.510549 TTCCTAAATATAAGATGTTGGCTGC 57.489 36.000 0.00 0.00 0.00 5.25
4441 5553 6.841601 TCCTAAATATAAGATGTTGGCTGCT 58.158 36.000 0.00 0.00 0.00 4.24
4442 5554 6.936900 TCCTAAATATAAGATGTTGGCTGCTC 59.063 38.462 0.00 0.00 0.00 4.26
4443 5555 6.712095 CCTAAATATAAGATGTTGGCTGCTCA 59.288 38.462 0.00 0.00 0.00 4.26
4444 5556 7.229306 CCTAAATATAAGATGTTGGCTGCTCAA 59.771 37.037 0.00 0.00 0.00 3.02
4445 5557 7.408756 AAATATAAGATGTTGGCTGCTCAAA 57.591 32.000 0.00 0.00 0.00 2.69
4446 5558 7.592885 AATATAAGATGTTGGCTGCTCAAAT 57.407 32.000 0.00 0.16 0.00 2.32
4447 5559 8.696043 AATATAAGATGTTGGCTGCTCAAATA 57.304 30.769 0.00 0.00 0.00 1.40
4448 5560 8.696043 ATATAAGATGTTGGCTGCTCAAATAA 57.304 30.769 0.00 0.00 0.00 1.40
4449 5561 5.726980 AAGATGTTGGCTGCTCAAATAAA 57.273 34.783 0.00 0.00 0.00 1.40
4450 5562 5.927281 AGATGTTGGCTGCTCAAATAAAT 57.073 34.783 0.00 0.00 0.00 1.40
4451 5563 7.408756 AAGATGTTGGCTGCTCAAATAAATA 57.591 32.000 0.00 0.00 0.00 1.40
4452 5564 7.408756 AGATGTTGGCTGCTCAAATAAATAA 57.591 32.000 0.00 0.00 0.00 1.40
4453 5565 7.839907 AGATGTTGGCTGCTCAAATAAATAAA 58.160 30.769 0.00 0.00 0.00 1.40
4454 5566 8.480501 AGATGTTGGCTGCTCAAATAAATAAAT 58.519 29.630 0.00 0.00 0.00 1.40
4455 5567 9.748708 GATGTTGGCTGCTCAAATAAATAAATA 57.251 29.630 0.00 0.00 0.00 1.40
4457 5569 9.935241 TGTTGGCTGCTCAAATAAATAAATAAA 57.065 25.926 0.00 0.00 0.00 1.40
4476 5588 7.781324 AATAAATATAAGATGTTGGGGCTGG 57.219 36.000 0.00 0.00 0.00 4.85
4477 5589 4.814224 AATATAAGATGTTGGGGCTGGT 57.186 40.909 0.00 0.00 0.00 4.00
4478 5590 2.442236 ATAAGATGTTGGGGCTGGTG 57.558 50.000 0.00 0.00 0.00 4.17
4479 5591 0.331278 TAAGATGTTGGGGCTGGTGG 59.669 55.000 0.00 0.00 0.00 4.61
4480 5592 2.362889 GATGTTGGGGCTGGTGGG 60.363 66.667 0.00 0.00 0.00 4.61
4481 5593 4.702274 ATGTTGGGGCTGGTGGGC 62.702 66.667 0.00 0.00 40.05 5.36
4517 5629 0.721718 GAGCCGTTGGATTTCACTCG 59.278 55.000 0.00 0.00 0.00 4.18
4535 5647 5.651139 TCACTCGTAAGGTAGACTGCTTAAT 59.349 40.000 0.00 0.00 38.47 1.40
4539 5651 6.327934 TCGTAAGGTAGACTGCTTAATTGAC 58.672 40.000 0.00 0.00 38.47 3.18
4603 5715 1.683917 AGTGGTCGGCAGATATGACTC 59.316 52.381 0.00 0.00 33.21 3.36
4606 5718 1.600663 GGTCGGCAGATATGACTCGTG 60.601 57.143 0.00 0.00 33.21 4.35
4614 5726 5.043903 GCAGATATGACTCGTGTTGTGTAT 58.956 41.667 0.00 0.00 0.00 2.29
4632 5744 5.133221 GTGTATTGAGGGCTGGATGTTTAT 58.867 41.667 0.00 0.00 0.00 1.40
4642 5754 4.433615 GCTGGATGTTTATCTCGTTCTGA 58.566 43.478 0.00 0.00 33.68 3.27
4645 5757 5.977635 TGGATGTTTATCTCGTTCTGATGT 58.022 37.500 0.00 0.00 33.68 3.06
4648 5760 4.565022 TGTTTATCTCGTTCTGATGTGCA 58.435 39.130 0.00 0.00 0.00 4.57
4649 5761 4.994217 TGTTTATCTCGTTCTGATGTGCAA 59.006 37.500 0.00 0.00 0.00 4.08
4653 5765 3.930336 TCTCGTTCTGATGTGCAAGAAT 58.070 40.909 2.07 0.00 0.00 2.40
4665 5777 6.809689 TGATGTGCAAGAATAAAAATCTGCTG 59.190 34.615 0.00 0.00 0.00 4.41
4681 5793 3.494626 TCTGCTGACACGTTCTTTTCATC 59.505 43.478 0.00 0.00 0.00 2.92
4682 5794 2.548057 TGCTGACACGTTCTTTTCATCC 59.452 45.455 0.00 0.00 0.00 3.51
4685 5797 2.224090 TGACACGTTCTTTTCATCCGGA 60.224 45.455 6.61 6.61 0.00 5.14
4686 5798 2.412089 GACACGTTCTTTTCATCCGGAG 59.588 50.000 11.34 2.05 0.00 4.63
4687 5799 1.128692 CACGTTCTTTTCATCCGGAGC 59.871 52.381 11.34 0.00 0.00 4.70
4688 5800 1.270625 ACGTTCTTTTCATCCGGAGCA 60.271 47.619 11.34 0.00 0.00 4.26
4689 5801 2.009774 CGTTCTTTTCATCCGGAGCAT 58.990 47.619 11.34 0.00 0.00 3.79
4690 5802 2.223112 CGTTCTTTTCATCCGGAGCATG 60.223 50.000 11.34 3.26 0.00 4.06
4691 5803 2.749621 GTTCTTTTCATCCGGAGCATGT 59.250 45.455 11.34 0.00 0.00 3.21
4692 5804 3.904800 TCTTTTCATCCGGAGCATGTA 57.095 42.857 11.34 0.00 0.00 2.29
4693 5805 3.797039 TCTTTTCATCCGGAGCATGTAG 58.203 45.455 11.34 3.11 0.00 2.74
4694 5806 1.953559 TTTCATCCGGAGCATGTAGC 58.046 50.000 11.34 0.00 46.19 3.58
4716 5828 3.969981 CGACCAAAACATACAACGGAAAC 59.030 43.478 0.00 0.00 0.00 2.78
4743 5855 3.002371 TGGAGCACCAACCACACA 58.998 55.556 0.00 0.00 43.91 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.766674 ACAACTCCTACTGGGCCACA 60.767 55.000 0.00 0.00 34.39 4.17
9 10 0.321653 CACAACTCCTACTGGGCCAC 60.322 60.000 0.00 0.00 34.39 5.01
10 11 2.066340 CACAACTCCTACTGGGCCA 58.934 57.895 5.85 5.85 34.39 5.36
11 12 1.377333 GCACAACTCCTACTGGGCC 60.377 63.158 0.00 0.00 35.87 5.80
12 13 0.391793 GAGCACAACTCCTACTGGGC 60.392 60.000 0.00 0.00 42.54 5.36
13 14 0.108615 CGAGCACAACTCCTACTGGG 60.109 60.000 0.00 0.00 43.01 4.45
14 15 0.888619 TCGAGCACAACTCCTACTGG 59.111 55.000 0.00 0.00 43.01 4.00
15 16 1.269723 TGTCGAGCACAACTCCTACTG 59.730 52.381 0.00 0.00 43.01 2.74
16 17 1.542030 CTGTCGAGCACAACTCCTACT 59.458 52.381 0.00 0.00 43.01 2.57
17 18 1.983972 CTGTCGAGCACAACTCCTAC 58.016 55.000 0.00 0.00 43.01 3.18
18 19 0.243907 GCTGTCGAGCACAACTCCTA 59.756 55.000 0.00 0.00 45.46 2.94
19 20 1.005630 GCTGTCGAGCACAACTCCT 60.006 57.895 0.00 0.00 45.46 3.69
20 21 3.355667 AGAGCTGTCGAGCACAACTCC 62.356 57.143 0.00 0.00 45.88 3.85
28 29 0.809241 CATCCCAAGAGCTGTCGAGC 60.809 60.000 0.00 0.00 46.64 5.03
29 30 0.179089 CCATCCCAAGAGCTGTCGAG 60.179 60.000 0.00 0.00 0.00 4.04
30 31 0.614697 TCCATCCCAAGAGCTGTCGA 60.615 55.000 0.00 0.00 0.00 4.20
31 32 0.467384 ATCCATCCCAAGAGCTGTCG 59.533 55.000 0.00 0.00 0.00 4.35
32 33 2.295885 CAATCCATCCCAAGAGCTGTC 58.704 52.381 0.00 0.00 0.00 3.51
33 34 1.637553 ACAATCCATCCCAAGAGCTGT 59.362 47.619 0.00 0.00 0.00 4.40
34 35 2.426024 CAACAATCCATCCCAAGAGCTG 59.574 50.000 0.00 0.00 0.00 4.24
35 36 2.622452 CCAACAATCCATCCCAAGAGCT 60.622 50.000 0.00 0.00 0.00 4.09
36 37 1.753073 CCAACAATCCATCCCAAGAGC 59.247 52.381 0.00 0.00 0.00 4.09
37 38 1.753073 GCCAACAATCCATCCCAAGAG 59.247 52.381 0.00 0.00 0.00 2.85
38 39 1.851304 GCCAACAATCCATCCCAAGA 58.149 50.000 0.00 0.00 0.00 3.02
39 40 0.457035 CGCCAACAATCCATCCCAAG 59.543 55.000 0.00 0.00 0.00 3.61
40 41 1.603236 GCGCCAACAATCCATCCCAA 61.603 55.000 0.00 0.00 0.00 4.12
41 42 2.051518 GCGCCAACAATCCATCCCA 61.052 57.895 0.00 0.00 0.00 4.37
42 43 2.785425 GGCGCCAACAATCCATCCC 61.785 63.158 24.80 0.00 0.00 3.85
43 44 2.807622 GGCGCCAACAATCCATCC 59.192 61.111 24.80 0.00 0.00 3.51
44 45 2.408835 CGGCGCCAACAATCCATC 59.591 61.111 28.98 0.00 0.00 3.51
45 46 3.825611 GCGGCGCCAACAATCCAT 61.826 61.111 28.98 0.00 0.00 3.41
47 48 4.481112 CAGCGGCGCCAACAATCC 62.481 66.667 30.40 4.78 0.00 3.01
48 49 4.481112 CCAGCGGCGCCAACAATC 62.481 66.667 30.40 7.46 0.00 2.67
73 74 2.995872 AACGGACAGAGAGGCGCTC 61.996 63.158 10.52 10.52 44.29 5.03
74 75 2.992114 AACGGACAGAGAGGCGCT 60.992 61.111 7.64 0.00 0.00 5.92
75 76 2.811317 CAACGGACAGAGAGGCGC 60.811 66.667 0.00 0.00 0.00 6.53
76 77 2.811317 GCAACGGACAGAGAGGCG 60.811 66.667 0.00 0.00 0.00 5.52
77 78 2.811317 CGCAACGGACAGAGAGGC 60.811 66.667 0.00 0.00 0.00 4.70
107 108 4.612412 TGACCGGTCCACGCCAAC 62.612 66.667 31.19 4.54 42.52 3.77
108 109 3.862991 TTGACCGGTCCACGCCAA 61.863 61.111 31.19 15.73 42.52 4.52
109 110 4.612412 GTTGACCGGTCCACGCCA 62.612 66.667 31.19 9.91 42.52 5.69
110 111 4.612412 TGTTGACCGGTCCACGCC 62.612 66.667 31.19 14.44 42.52 5.68
111 112 3.343421 GTGTTGACCGGTCCACGC 61.343 66.667 29.67 29.67 42.52 5.34
112 113 1.954146 CTGTGTTGACCGGTCCACG 60.954 63.158 31.19 21.44 43.80 4.94
113 114 1.597027 CCTGTGTTGACCGGTCCAC 60.597 63.158 31.19 29.20 0.00 4.02
114 115 1.754380 CTCCTGTGTTGACCGGTCCA 61.754 60.000 31.19 18.97 0.00 4.02
115 116 1.004918 CTCCTGTGTTGACCGGTCC 60.005 63.158 31.19 17.48 0.00 4.46
116 117 0.038159 CTCTCCTGTGTTGACCGGTC 60.038 60.000 28.17 28.17 0.00 4.79
117 118 2.050269 CTCTCCTGTGTTGACCGGT 58.950 57.895 6.92 6.92 0.00 5.28
118 119 1.374758 GCTCTCCTGTGTTGACCGG 60.375 63.158 0.00 0.00 0.00 5.28
119 120 0.668706 CTGCTCTCCTGTGTTGACCG 60.669 60.000 0.00 0.00 0.00 4.79
120 121 0.952984 GCTGCTCTCCTGTGTTGACC 60.953 60.000 0.00 0.00 0.00 4.02
121 122 0.952984 GGCTGCTCTCCTGTGTTGAC 60.953 60.000 0.00 0.00 0.00 3.18
122 123 1.372683 GGCTGCTCTCCTGTGTTGA 59.627 57.895 0.00 0.00 0.00 3.18
123 124 1.673665 GGGCTGCTCTCCTGTGTTG 60.674 63.158 0.00 0.00 0.00 3.33
124 125 2.753029 GGGCTGCTCTCCTGTGTT 59.247 61.111 0.00 0.00 0.00 3.32
125 126 3.325753 GGGGCTGCTCTCCTGTGT 61.326 66.667 0.00 0.00 0.00 3.72
126 127 3.324930 TGGGGCTGCTCTCCTGTG 61.325 66.667 0.00 0.00 0.00 3.66
127 128 3.325753 GTGGGGCTGCTCTCCTGT 61.326 66.667 0.00 0.00 0.00 4.00
128 129 4.106925 GGTGGGGCTGCTCTCCTG 62.107 72.222 0.00 0.00 0.00 3.86
129 130 4.345286 AGGTGGGGCTGCTCTCCT 62.345 66.667 10.11 10.11 0.00 3.69
130 131 3.791586 GAGGTGGGGCTGCTCTCC 61.792 72.222 0.00 2.71 0.00 3.71
131 132 4.154347 CGAGGTGGGGCTGCTCTC 62.154 72.222 0.00 0.00 0.00 3.20
132 133 4.704103 TCGAGGTGGGGCTGCTCT 62.704 66.667 0.00 0.00 0.00 4.09
133 134 4.154347 CTCGAGGTGGGGCTGCTC 62.154 72.222 3.91 0.00 0.00 4.26
144 145 2.735772 CCCACATCCACCCTCGAGG 61.736 68.421 25.36 25.36 43.78 4.63
145 146 1.990060 ACCCACATCCACCCTCGAG 60.990 63.158 5.13 5.13 0.00 4.04
146 147 2.121832 ACCCACATCCACCCTCGA 59.878 61.111 0.00 0.00 0.00 4.04
147 148 1.836999 TTCACCCACATCCACCCTCG 61.837 60.000 0.00 0.00 0.00 4.63
148 149 0.625849 ATTCACCCACATCCACCCTC 59.374 55.000 0.00 0.00 0.00 4.30
149 150 0.625849 GATTCACCCACATCCACCCT 59.374 55.000 0.00 0.00 0.00 4.34
150 151 0.748005 CGATTCACCCACATCCACCC 60.748 60.000 0.00 0.00 0.00 4.61
151 152 1.376609 GCGATTCACCCACATCCACC 61.377 60.000 0.00 0.00 0.00 4.61
152 153 1.376609 GGCGATTCACCCACATCCAC 61.377 60.000 0.00 0.00 0.00 4.02
153 154 1.077787 GGCGATTCACCCACATCCA 60.078 57.895 0.00 0.00 0.00 3.41
154 155 1.077787 TGGCGATTCACCCACATCC 60.078 57.895 0.00 0.00 0.00 3.51
155 156 4.635769 TGGCGATTCACCCACATC 57.364 55.556 0.00 0.00 0.00 3.06
159 160 1.523154 GCAAAGTGGCGATTCACCCA 61.523 55.000 0.00 0.00 38.34 4.51
160 161 1.212751 GCAAAGTGGCGATTCACCC 59.787 57.895 0.00 0.00 38.34 4.61
161 162 1.212751 GGCAAAGTGGCGATTCACC 59.787 57.895 0.00 0.00 38.34 4.02
162 163 1.212751 GGGCAAAGTGGCGATTCAC 59.787 57.895 0.00 0.00 44.78 3.18
163 164 1.976474 GGGGCAAAGTGGCGATTCA 60.976 57.895 0.00 0.00 44.78 2.57
164 165 2.885113 GGGGCAAAGTGGCGATTC 59.115 61.111 0.00 0.00 44.78 2.52
165 166 3.061848 CGGGGCAAAGTGGCGATT 61.062 61.111 0.00 0.00 44.78 3.34
166 167 4.028490 TCGGGGCAAAGTGGCGAT 62.028 61.111 0.00 0.00 44.78 4.58
169 170 2.909965 TTGTCGGGGCAAAGTGGC 60.910 61.111 0.00 0.00 42.88 5.01
170 171 2.268076 CCTTGTCGGGGCAAAGTGG 61.268 63.158 0.00 0.00 0.00 4.00
171 172 3.354678 CCTTGTCGGGGCAAAGTG 58.645 61.111 0.00 0.00 0.00 3.16
182 183 3.591254 AAGAGACGCCGGCCTTGTC 62.591 63.158 23.46 22.14 0.00 3.18
183 184 3.591254 GAAGAGACGCCGGCCTTGT 62.591 63.158 23.46 13.85 0.00 3.16
184 185 2.815647 GAAGAGACGCCGGCCTTG 60.816 66.667 23.46 9.96 0.00 3.61
185 186 4.083862 GGAAGAGACGCCGGCCTT 62.084 66.667 23.46 18.39 0.00 4.35
193 194 0.317103 CATACTCGCGGGAAGAGACG 60.317 60.000 15.95 0.00 38.97 4.18
194 195 0.030908 CCATACTCGCGGGAAGAGAC 59.969 60.000 15.95 0.00 38.97 3.36
195 196 1.735376 GCCATACTCGCGGGAAGAGA 61.735 60.000 15.95 0.00 38.97 3.10
196 197 1.300233 GCCATACTCGCGGGAAGAG 60.300 63.158 15.95 0.22 41.27 2.85
197 198 2.055633 TGCCATACTCGCGGGAAGA 61.056 57.895 15.95 0.00 0.00 2.87
198 199 1.883084 GTGCCATACTCGCGGGAAG 60.883 63.158 15.95 1.18 0.00 3.46
199 200 2.185867 GTGCCATACTCGCGGGAA 59.814 61.111 15.95 0.00 0.00 3.97
200 201 3.845259 GGTGCCATACTCGCGGGA 61.845 66.667 15.95 0.92 0.00 5.14
201 202 3.792053 GAGGTGCCATACTCGCGGG 62.792 68.421 3.27 3.27 0.00 6.13
202 203 2.279517 GAGGTGCCATACTCGCGG 60.280 66.667 6.13 0.00 0.00 6.46
221 222 4.767255 GGACCTGGCCGTGCTGAG 62.767 72.222 0.00 0.00 0.00 3.35
228 229 4.760047 CTTGTCGGGACCTGGCCG 62.760 72.222 1.49 6.43 0.00 6.13
229 230 2.804828 CTTCTTGTCGGGACCTGGCC 62.805 65.000 1.49 0.00 0.00 5.36
230 231 1.376037 CTTCTTGTCGGGACCTGGC 60.376 63.158 0.00 0.00 0.00 4.85
231 232 1.296715 CCTTCTTGTCGGGACCTGG 59.703 63.158 0.00 0.00 0.00 4.45
232 233 1.296715 CCCTTCTTGTCGGGACCTG 59.703 63.158 0.00 0.00 43.44 4.00
233 234 1.152096 ACCCTTCTTGTCGGGACCT 60.152 57.895 0.58 0.00 43.44 3.85
234 235 1.295746 GACCCTTCTTGTCGGGACC 59.704 63.158 0.58 0.00 43.44 4.46
235 236 0.037232 CTGACCCTTCTTGTCGGGAC 60.037 60.000 0.58 0.00 43.44 4.46
236 237 2.362242 CTGACCCTTCTTGTCGGGA 58.638 57.895 0.58 0.00 43.44 5.14
238 239 1.376037 GCCTGACCCTTCTTGTCGG 60.376 63.158 0.00 0.00 38.56 4.79
239 240 1.738099 CGCCTGACCCTTCTTGTCG 60.738 63.158 0.00 0.00 35.46 4.35
240 241 0.034896 TTCGCCTGACCCTTCTTGTC 59.965 55.000 0.00 0.00 0.00 3.18
241 242 0.250338 GTTCGCCTGACCCTTCTTGT 60.250 55.000 0.00 0.00 0.00 3.16
242 243 0.035458 AGTTCGCCTGACCCTTCTTG 59.965 55.000 0.00 0.00 0.00 3.02
243 244 1.550976 CTAGTTCGCCTGACCCTTCTT 59.449 52.381 0.00 0.00 0.00 2.52
244 245 1.187087 CTAGTTCGCCTGACCCTTCT 58.813 55.000 0.00 0.00 0.00 2.85
245 246 1.183549 TCTAGTTCGCCTGACCCTTC 58.816 55.000 0.00 0.00 0.00 3.46
246 247 1.275573 GTTCTAGTTCGCCTGACCCTT 59.724 52.381 0.00 0.00 0.00 3.95
247 248 0.896226 GTTCTAGTTCGCCTGACCCT 59.104 55.000 0.00 0.00 0.00 4.34
248 249 0.896226 AGTTCTAGTTCGCCTGACCC 59.104 55.000 0.00 0.00 0.00 4.46
249 250 2.737252 CAAAGTTCTAGTTCGCCTGACC 59.263 50.000 0.00 0.00 0.00 4.02
250 251 2.737252 CCAAAGTTCTAGTTCGCCTGAC 59.263 50.000 0.00 0.00 0.00 3.51
251 252 2.870435 GCCAAAGTTCTAGTTCGCCTGA 60.870 50.000 0.00 0.00 0.00 3.86
252 253 1.464997 GCCAAAGTTCTAGTTCGCCTG 59.535 52.381 0.00 0.00 0.00 4.85
253 254 1.610886 GGCCAAAGTTCTAGTTCGCCT 60.611 52.381 0.00 0.00 32.31 5.52
254 255 0.803117 GGCCAAAGTTCTAGTTCGCC 59.197 55.000 0.00 0.00 0.00 5.54
255 256 1.464997 CTGGCCAAAGTTCTAGTTCGC 59.535 52.381 7.01 0.00 0.00 4.70
256 257 1.464997 GCTGGCCAAAGTTCTAGTTCG 59.535 52.381 7.01 0.00 0.00 3.95
257 258 2.485814 CTGCTGGCCAAAGTTCTAGTTC 59.514 50.000 7.01 0.00 0.00 3.01
258 259 2.508526 CTGCTGGCCAAAGTTCTAGTT 58.491 47.619 7.01 0.00 0.00 2.24
259 260 1.271597 CCTGCTGGCCAAAGTTCTAGT 60.272 52.381 7.01 0.00 0.00 2.57
260 261 1.003580 TCCTGCTGGCCAAAGTTCTAG 59.996 52.381 7.01 0.00 0.00 2.43
261 262 1.064003 TCCTGCTGGCCAAAGTTCTA 58.936 50.000 7.01 0.00 0.00 2.10
262 263 0.407139 ATCCTGCTGGCCAAAGTTCT 59.593 50.000 7.01 0.00 0.00 3.01
263 264 0.813821 GATCCTGCTGGCCAAAGTTC 59.186 55.000 7.01 3.46 0.00 3.01
264 265 0.962356 CGATCCTGCTGGCCAAAGTT 60.962 55.000 7.01 0.00 0.00 2.66
265 266 1.377725 CGATCCTGCTGGCCAAAGT 60.378 57.895 7.01 0.00 0.00 2.66
266 267 0.962356 AACGATCCTGCTGGCCAAAG 60.962 55.000 7.01 7.59 0.00 2.77
267 268 0.960364 GAACGATCCTGCTGGCCAAA 60.960 55.000 7.01 0.00 0.00 3.28
268 269 1.377202 GAACGATCCTGCTGGCCAA 60.377 57.895 7.01 0.00 0.00 4.52
269 270 2.268920 GAACGATCCTGCTGGCCA 59.731 61.111 4.71 4.71 0.00 5.36
270 271 2.514824 GGAACGATCCTGCTGGCC 60.515 66.667 4.14 0.00 42.93 5.36
271 272 2.514824 GGGAACGATCCTGCTGGC 60.515 66.667 11.90 0.00 45.77 4.85
286 287 2.113139 GTATCCCATGCACCCGGG 59.887 66.667 22.25 22.25 44.60 5.73
291 292 1.525995 CCGGTGGTATCCCATGCAC 60.526 63.158 0.00 0.00 44.35 4.57
308 309 1.202256 GCCATCCGGTTTTTCGAATCC 60.202 52.381 0.00 1.56 33.28 3.01
348 349 2.303549 GACAGATGGCGACTCCCCTG 62.304 65.000 0.00 0.00 39.18 4.45
349 350 2.039624 ACAGATGGCGACTCCCCT 59.960 61.111 0.00 0.00 0.00 4.79
352 353 2.501610 GGGACAGATGGCGACTCC 59.498 66.667 0.00 0.00 0.00 3.85
379 380 4.309347 TCTATCGCCGCGCTCGAC 62.309 66.667 20.71 0.14 38.88 4.20
391 392 0.312416 ACGCTGACGATGGCTCTATC 59.688 55.000 0.00 0.00 43.93 2.08
432 433 4.220602 GGAAAAGGAAAGATAAGCTGGCAA 59.779 41.667 0.00 0.00 0.00 4.52
503 504 3.449227 CATGCTGCTGTGGCCTGG 61.449 66.667 3.32 0.00 37.74 4.45
512 513 2.338015 CCAGAAACGGCATGCTGCT 61.338 57.895 26.52 12.11 44.28 4.24
515 516 1.526575 CCAACCAGAAACGGCATGCT 61.527 55.000 18.92 0.00 0.00 3.79
523 524 2.952310 GCCCATAGATCCAACCAGAAAC 59.048 50.000 0.00 0.00 0.00 2.78
527 528 0.250467 CCGCCCATAGATCCAACCAG 60.250 60.000 0.00 0.00 0.00 4.00
532 533 1.148273 GCAACCGCCCATAGATCCA 59.852 57.895 0.00 0.00 0.00 3.41
623 624 3.118454 CAACCTCGATTGGCGCGT 61.118 61.111 8.43 0.00 40.61 6.01
627 628 2.213499 CTATGGACAACCTCGATTGGC 58.787 52.381 3.94 0.00 36.81 4.52
631 632 1.496060 TGGCTATGGACAACCTCGAT 58.504 50.000 0.00 0.00 37.04 3.59
633 634 1.586422 CATGGCTATGGACAACCTCG 58.414 55.000 1.33 0.00 32.29 4.63
676 677 2.655364 CGTAGGCGCATGGACTCG 60.655 66.667 10.83 0.24 34.13 4.18
763 764 2.513666 GGGCATGGTCGCGATCAA 60.514 61.111 27.98 10.19 0.00 2.57
764 765 4.545706 GGGGCATGGTCGCGATCA 62.546 66.667 26.40 26.40 0.00 2.92
769 770 4.778143 AACGAGGGGCATGGTCGC 62.778 66.667 0.00 0.00 37.20 5.19
796 797 0.676184 TGATCATCAGGCCTACGAGC 59.324 55.000 3.98 5.67 0.00 5.03
798 799 1.775385 TGTGATCATCAGGCCTACGA 58.225 50.000 3.98 0.00 0.00 3.43
811 812 1.550065 CGATATCCCGCGATGTGATC 58.450 55.000 8.23 2.71 0.00 2.92
826 827 0.398522 ACCCCATCTCCACTGCGATA 60.399 55.000 0.00 0.00 0.00 2.92
833 834 1.416772 GCTTACCTACCCCATCTCCAC 59.583 57.143 0.00 0.00 0.00 4.02
910 911 2.096406 CGTCGCAACGCCATTCTG 59.904 61.111 0.00 0.00 42.82 3.02
932 933 2.741985 CACGCACAATCCTGCCGA 60.742 61.111 0.00 0.00 33.18 5.54
936 937 4.465512 GGCGCACGCACAATCCTG 62.466 66.667 17.69 0.00 44.11 3.86
955 956 3.733960 GCCACGTTCCGGCTTTCC 61.734 66.667 8.09 0.00 46.56 3.13
1005 1006 3.885521 GCTGCTGGATTGAGCGCC 61.886 66.667 2.29 0.00 42.32 6.53
1016 1017 1.201647 CATCCTTGGACAAAGCTGCTG 59.798 52.381 1.35 0.00 34.24 4.41
1025 1026 1.296392 CCGAGCACATCCTTGGACA 59.704 57.895 0.00 0.00 38.47 4.02
1041 1042 2.279120 GGCATCTCTCGACTGCCG 60.279 66.667 7.55 0.00 45.35 5.69
1045 1046 2.492090 GCGTGGCATCTCTCGACT 59.508 61.111 0.00 0.00 0.00 4.18
1063 1064 2.588877 CGCGGTATTCCTGCCCAG 60.589 66.667 0.00 0.00 32.58 4.45
1064 1065 4.169696 CCGCGGTATTCCTGCCCA 62.170 66.667 19.50 0.00 32.58 5.36
1065 1066 3.809374 CTCCGCGGTATTCCTGCCC 62.809 68.421 27.15 0.00 32.58 5.36
1066 1067 2.280186 CTCCGCGGTATTCCTGCC 60.280 66.667 27.15 0.00 32.58 4.85
1067 1068 2.967615 GCTCCGCGGTATTCCTGC 60.968 66.667 27.15 14.51 0.00 4.85
1068 1069 1.300233 GAGCTCCGCGGTATTCCTG 60.300 63.158 27.15 8.71 0.00 3.86
1069 1070 2.846652 CGAGCTCCGCGGTATTCCT 61.847 63.158 27.15 14.64 0.00 3.36
1070 1071 2.354773 CGAGCTCCGCGGTATTCC 60.355 66.667 27.15 10.85 0.00 3.01
1071 1072 1.370657 CTCGAGCTCCGCGGTATTC 60.371 63.158 27.15 18.66 38.37 1.75
1072 1073 2.722487 CTCGAGCTCCGCGGTATT 59.278 61.111 27.15 11.58 38.37 1.89
1073 1074 3.967335 GCTCGAGCTCCGCGGTAT 61.967 66.667 29.88 12.42 38.37 2.73
1089 1090 0.566593 GTTCGAATACAGCGTCGAGC 59.433 55.000 0.00 0.00 46.10 5.03
1090 1091 2.102633 GAGTTCGAATACAGCGTCGAG 58.897 52.381 0.00 0.00 46.10 4.04
1091 1092 1.528400 CGAGTTCGAATACAGCGTCGA 60.528 52.381 0.00 0.00 44.10 4.20
1092 1093 0.832030 CGAGTTCGAATACAGCGTCG 59.168 55.000 0.00 0.00 43.02 5.12
1093 1094 0.566593 GCGAGTTCGAATACAGCGTC 59.433 55.000 0.00 0.00 43.02 5.19
1094 1095 0.801067 GGCGAGTTCGAATACAGCGT 60.801 55.000 0.00 0.00 43.02 5.07
1095 1096 1.798368 CGGCGAGTTCGAATACAGCG 61.798 60.000 0.00 2.57 43.02 5.18
1096 1097 0.801067 ACGGCGAGTTCGAATACAGC 60.801 55.000 16.62 5.25 43.02 4.40
1097 1098 2.373269 CTACGGCGAGTTCGAATACAG 58.627 52.381 16.62 0.00 43.02 2.74
1098 1099 1.532505 GCTACGGCGAGTTCGAATACA 60.533 52.381 16.62 0.00 43.02 2.29
1099 1100 1.118833 GCTACGGCGAGTTCGAATAC 58.881 55.000 16.62 0.00 43.02 1.89
1100 1101 0.029834 GGCTACGGCGAGTTCGAATA 59.970 55.000 16.62 0.00 43.02 1.75
1101 1102 1.226888 GGCTACGGCGAGTTCGAAT 60.227 57.895 16.62 0.00 43.02 3.34
1102 1103 2.180017 GGCTACGGCGAGTTCGAA 59.820 61.111 16.62 0.00 43.02 3.71
1113 1114 4.569023 TCGCTCATGCCGGCTACG 62.569 66.667 29.70 22.10 40.55 3.51
1114 1115 2.659897 CTCGCTCATGCCGGCTAC 60.660 66.667 29.70 11.17 35.36 3.58
1115 1116 4.592192 GCTCGCTCATGCCGGCTA 62.592 66.667 29.70 14.84 35.36 3.93
1118 1119 2.106938 TAAGCTCGCTCATGCCGG 59.893 61.111 0.00 0.00 35.36 6.13
1119 1120 1.211818 GAGTAAGCTCGCTCATGCCG 61.212 60.000 11.29 0.00 35.36 5.69
1120 1121 0.878086 GGAGTAAGCTCGCTCATGCC 60.878 60.000 16.21 0.22 42.53 4.40
1121 1122 0.179100 TGGAGTAAGCTCGCTCATGC 60.179 55.000 16.21 3.64 42.53 4.06
1122 1123 2.200067 CTTGGAGTAAGCTCGCTCATG 58.800 52.381 16.21 0.00 42.53 3.07
1123 1124 1.137872 CCTTGGAGTAAGCTCGCTCAT 59.862 52.381 16.21 0.00 42.53 2.90
1124 1125 0.532573 CCTTGGAGTAAGCTCGCTCA 59.467 55.000 16.21 3.77 42.53 4.26
1125 1126 0.179097 CCCTTGGAGTAAGCTCGCTC 60.179 60.000 8.50 8.50 42.53 5.03
1126 1127 1.901085 CCCTTGGAGTAAGCTCGCT 59.099 57.895 0.00 0.00 42.53 4.93
1127 1128 1.815840 GCCCTTGGAGTAAGCTCGC 60.816 63.158 0.00 0.00 42.53 5.03
1128 1129 1.519455 CGCCCTTGGAGTAAGCTCG 60.519 63.158 0.00 0.00 42.53 5.03
1129 1130 0.249398 TTCGCCCTTGGAGTAAGCTC 59.751 55.000 0.00 0.00 40.93 4.09
1130 1131 0.912486 ATTCGCCCTTGGAGTAAGCT 59.088 50.000 0.00 0.00 34.96 3.74
1131 1132 1.300481 GATTCGCCCTTGGAGTAAGC 58.700 55.000 0.00 0.00 34.96 3.09
1132 1133 1.136305 TCGATTCGCCCTTGGAGTAAG 59.864 52.381 0.00 0.00 36.11 2.34
1133 1134 1.187974 TCGATTCGCCCTTGGAGTAA 58.812 50.000 0.00 0.00 0.00 2.24
1134 1135 1.187974 TTCGATTCGCCCTTGGAGTA 58.812 50.000 0.00 0.00 0.00 2.59
1135 1136 0.323629 TTTCGATTCGCCCTTGGAGT 59.676 50.000 0.00 0.00 0.00 3.85
1136 1137 1.009829 CTTTCGATTCGCCCTTGGAG 58.990 55.000 0.00 0.00 0.00 3.86
1137 1138 0.392461 CCTTTCGATTCGCCCTTGGA 60.392 55.000 0.00 0.00 0.00 3.53
1138 1139 1.376609 CCCTTTCGATTCGCCCTTGG 61.377 60.000 0.00 0.00 0.00 3.61
1139 1140 0.392461 TCCCTTTCGATTCGCCCTTG 60.392 55.000 0.00 0.00 0.00 3.61
1140 1141 0.107654 CTCCCTTTCGATTCGCCCTT 60.108 55.000 0.00 0.00 0.00 3.95
1141 1142 0.976073 TCTCCCTTTCGATTCGCCCT 60.976 55.000 0.00 0.00 0.00 5.19
1142 1143 0.107848 TTCTCCCTTTCGATTCGCCC 60.108 55.000 0.00 0.00 0.00 6.13
1143 1144 1.291132 CTTCTCCCTTTCGATTCGCC 58.709 55.000 0.00 0.00 0.00 5.54
1144 1145 0.653114 GCTTCTCCCTTTCGATTCGC 59.347 55.000 0.00 0.00 0.00 4.70
1145 1146 0.924090 CGCTTCTCCCTTTCGATTCG 59.076 55.000 0.00 0.00 0.00 3.34
1146 1147 1.291132 CCGCTTCTCCCTTTCGATTC 58.709 55.000 0.00 0.00 0.00 2.52
1147 1148 0.107654 CCCGCTTCTCCCTTTCGATT 60.108 55.000 0.00 0.00 0.00 3.34
1148 1149 1.522569 CCCGCTTCTCCCTTTCGAT 59.477 57.895 0.00 0.00 0.00 3.59
1149 1150 2.656069 CCCCGCTTCTCCCTTTCGA 61.656 63.158 0.00 0.00 0.00 3.71
1150 1151 2.125106 CCCCGCTTCTCCCTTTCG 60.125 66.667 0.00 0.00 0.00 3.46
1151 1152 1.222113 CTCCCCGCTTCTCCCTTTC 59.778 63.158 0.00 0.00 0.00 2.62
1152 1153 0.621862 ATCTCCCCGCTTCTCCCTTT 60.622 55.000 0.00 0.00 0.00 3.11
1153 1154 1.003573 ATCTCCCCGCTTCTCCCTT 59.996 57.895 0.00 0.00 0.00 3.95
1154 1155 1.458588 GATCTCCCCGCTTCTCCCT 60.459 63.158 0.00 0.00 0.00 4.20
1155 1156 2.862223 CGATCTCCCCGCTTCTCCC 61.862 68.421 0.00 0.00 0.00 4.30
1156 1157 2.731374 CGATCTCCCCGCTTCTCC 59.269 66.667 0.00 0.00 0.00 3.71
1157 1158 1.182385 ATCCGATCTCCCCGCTTCTC 61.182 60.000 0.00 0.00 0.00 2.87
1158 1159 1.152440 ATCCGATCTCCCCGCTTCT 60.152 57.895 0.00 0.00 0.00 2.85
1159 1160 1.005630 CATCCGATCTCCCCGCTTC 60.006 63.158 0.00 0.00 0.00 3.86
1160 1161 1.048724 TTCATCCGATCTCCCCGCTT 61.049 55.000 0.00 0.00 0.00 4.68
1161 1162 1.457643 TTCATCCGATCTCCCCGCT 60.458 57.895 0.00 0.00 0.00 5.52
1162 1163 1.005630 CTTCATCCGATCTCCCCGC 60.006 63.158 0.00 0.00 0.00 6.13
1163 1164 0.032678 CACTTCATCCGATCTCCCCG 59.967 60.000 0.00 0.00 0.00 5.73
1164 1165 0.394565 CCACTTCATCCGATCTCCCC 59.605 60.000 0.00 0.00 0.00 4.81
1165 1166 1.069358 GACCACTTCATCCGATCTCCC 59.931 57.143 0.00 0.00 0.00 4.30
1166 1167 1.269309 CGACCACTTCATCCGATCTCC 60.269 57.143 0.00 0.00 0.00 3.71
1167 1168 1.405821 ACGACCACTTCATCCGATCTC 59.594 52.381 0.00 0.00 0.00 2.75
1168 1169 1.405821 GACGACCACTTCATCCGATCT 59.594 52.381 0.00 0.00 0.00 2.75
1169 1170 1.134367 TGACGACCACTTCATCCGATC 59.866 52.381 0.00 0.00 0.00 3.69
1170 1171 1.182667 TGACGACCACTTCATCCGAT 58.817 50.000 0.00 0.00 0.00 4.18
1171 1172 1.182667 ATGACGACCACTTCATCCGA 58.817 50.000 0.00 0.00 30.89 4.55
1172 1173 1.660607 CAATGACGACCACTTCATCCG 59.339 52.381 0.00 0.00 34.64 4.18
1173 1174 2.932614 CTCAATGACGACCACTTCATCC 59.067 50.000 0.00 0.00 34.64 3.51
1174 1175 3.614616 GTCTCAATGACGACCACTTCATC 59.385 47.826 0.00 0.00 34.64 2.92
1175 1176 3.589988 GTCTCAATGACGACCACTTCAT 58.410 45.455 0.00 0.00 36.74 2.57
1176 1177 3.026630 GTCTCAATGACGACCACTTCA 57.973 47.619 0.00 0.00 35.81 3.02
1186 1187 0.108138 CCAGGGACCGTCTCAATGAC 60.108 60.000 0.14 0.00 42.06 3.06
1187 1188 0.544357 ACCAGGGACCGTCTCAATGA 60.544 55.000 0.14 0.00 0.00 2.57
1188 1189 0.391661 CACCAGGGACCGTCTCAATG 60.392 60.000 0.14 0.00 0.00 2.82
1189 1190 1.553690 CCACCAGGGACCGTCTCAAT 61.554 60.000 0.14 0.00 40.01 2.57
1190 1191 2.214216 CCACCAGGGACCGTCTCAA 61.214 63.158 0.14 0.00 40.01 3.02
1191 1192 2.603473 CCACCAGGGACCGTCTCA 60.603 66.667 0.14 0.00 40.01 3.27
1192 1193 4.083862 GCCACCAGGGACCGTCTC 62.084 72.222 0.00 0.00 40.01 3.36
1199 1200 2.284921 CTCTCAGGCCACCAGGGA 60.285 66.667 5.01 0.00 40.01 4.20
1200 1201 4.106925 GCTCTCAGGCCACCAGGG 62.107 72.222 5.01 0.00 40.85 4.45
1201 1202 3.007920 AGCTCTCAGGCCACCAGG 61.008 66.667 5.01 0.00 38.23 4.45
1202 1203 1.834856 TTCAGCTCTCAGGCCACCAG 61.835 60.000 5.01 0.00 0.00 4.00
1203 1204 1.834856 CTTCAGCTCTCAGGCCACCA 61.835 60.000 5.01 0.00 0.00 4.17
1204 1205 1.078567 CTTCAGCTCTCAGGCCACC 60.079 63.158 5.01 0.00 0.00 4.61
1205 1206 0.108233 CTCTTCAGCTCTCAGGCCAC 60.108 60.000 5.01 0.00 0.00 5.01
1206 1207 1.263342 CCTCTTCAGCTCTCAGGCCA 61.263 60.000 5.01 0.00 0.00 5.36
1207 1208 0.975040 TCCTCTTCAGCTCTCAGGCC 60.975 60.000 0.00 0.00 0.00 5.19
1208 1209 1.069049 GATCCTCTTCAGCTCTCAGGC 59.931 57.143 0.00 0.00 0.00 4.85
1209 1210 2.363038 CTGATCCTCTTCAGCTCTCAGG 59.637 54.545 0.00 0.00 36.96 3.86
1210 1211 2.363038 CCTGATCCTCTTCAGCTCTCAG 59.637 54.545 0.00 0.00 41.50 3.35
1211 1212 2.024560 TCCTGATCCTCTTCAGCTCTCA 60.025 50.000 0.00 0.00 41.50 3.27
1212 1213 2.665165 TCCTGATCCTCTTCAGCTCTC 58.335 52.381 0.00 0.00 41.50 3.20
1213 1214 2.844654 TCCTGATCCTCTTCAGCTCT 57.155 50.000 0.00 0.00 41.50 4.09
1214 1215 3.902881 TTTCCTGATCCTCTTCAGCTC 57.097 47.619 0.00 0.00 41.50 4.09
1215 1216 3.136260 GGATTTCCTGATCCTCTTCAGCT 59.864 47.826 0.00 0.00 41.96 4.24
1216 1217 3.118112 TGGATTTCCTGATCCTCTTCAGC 60.118 47.826 5.59 0.00 44.85 4.26
1217 1218 4.767578 TGGATTTCCTGATCCTCTTCAG 57.232 45.455 5.59 0.00 44.85 3.02
1218 1219 4.723285 TGATGGATTTCCTGATCCTCTTCA 59.277 41.667 5.59 3.94 44.85 3.02
1219 1220 5.301835 TGATGGATTTCCTGATCCTCTTC 57.698 43.478 5.59 1.82 44.85 2.87
1220 1221 4.104420 CCTGATGGATTTCCTGATCCTCTT 59.896 45.833 5.59 0.00 44.85 2.85
1221 1222 3.651904 CCTGATGGATTTCCTGATCCTCT 59.348 47.826 5.59 0.00 44.85 3.69
1222 1223 3.810033 GCCTGATGGATTTCCTGATCCTC 60.810 52.174 5.59 2.26 44.85 3.71
1223 1224 2.107901 GCCTGATGGATTTCCTGATCCT 59.892 50.000 5.59 0.00 44.85 3.24
1224 1225 2.107901 AGCCTGATGGATTTCCTGATCC 59.892 50.000 0.00 0.00 44.83 3.36
1225 1226 3.505480 AGCCTGATGGATTTCCTGATC 57.495 47.619 0.00 0.00 36.82 2.92
1226 1227 5.595814 AATAGCCTGATGGATTTCCTGAT 57.404 39.130 0.00 0.00 36.82 2.90
1227 1228 5.135383 CAAATAGCCTGATGGATTTCCTGA 58.865 41.667 0.00 0.00 36.82 3.86
1228 1229 4.280174 CCAAATAGCCTGATGGATTTCCTG 59.720 45.833 0.00 0.00 34.82 3.86
1229 1230 4.078980 ACCAAATAGCCTGATGGATTTCCT 60.079 41.667 3.48 0.00 36.75 3.36
1230 1231 4.218312 ACCAAATAGCCTGATGGATTTCC 58.782 43.478 3.48 0.00 36.75 3.13
1231 1232 5.009410 CAGACCAAATAGCCTGATGGATTTC 59.991 44.000 3.48 0.00 36.75 2.17
1232 1233 4.891756 CAGACCAAATAGCCTGATGGATTT 59.108 41.667 3.48 0.00 36.75 2.17
1233 1234 4.079558 ACAGACCAAATAGCCTGATGGATT 60.080 41.667 3.48 0.00 36.75 3.01
1234 1235 3.461085 ACAGACCAAATAGCCTGATGGAT 59.539 43.478 3.48 0.00 36.75 3.41
1235 1236 2.846206 ACAGACCAAATAGCCTGATGGA 59.154 45.455 3.48 0.00 36.75 3.41
1264 1265 5.989777 AGTGTAAGGCCAATATGATTCGTAC 59.010 40.000 5.01 0.00 0.00 3.67
1317 1320 2.627699 TCCATTGTTTCTTTCCTGGCAC 59.372 45.455 0.00 0.00 0.00 5.01
1342 1345 6.632909 TGCTAATTATTTGTGCTTGCTGAAT 58.367 32.000 0.00 0.00 0.00 2.57
1464 1469 5.278266 GCAAGGTATTACTCAAGTTGCACAA 60.278 40.000 0.00 0.00 38.89 3.33
1479 1484 2.301870 TGTGAGAGAACGGCAAGGTATT 59.698 45.455 0.00 0.00 0.00 1.89
1497 1509 8.511604 AGGGATCATAAGTTAGTCATTTTGTG 57.488 34.615 0.00 0.00 0.00 3.33
1522 1534 7.857569 GTGTAAGCATAACACACTCAAAAGTA 58.142 34.615 10.32 0.00 45.26 2.24
1723 1738 1.880221 CGTGTTGGGGAGTGCATACAA 60.880 52.381 0.00 0.00 0.00 2.41
1729 1744 0.249398 AGATACGTGTTGGGGAGTGC 59.751 55.000 0.00 0.00 0.00 4.40
1786 1801 4.705023 ACCTATTTGTTGAGGTATTGCCAC 59.295 41.667 0.00 0.00 44.51 5.01
1891 1906 3.475566 TGATTTCTCCGGGCTTCATAG 57.524 47.619 0.00 0.00 0.00 2.23
2104 2119 2.094762 AATACGAGGTGCCACAAGAC 57.905 50.000 0.00 0.00 0.00 3.01
2139 2154 4.750598 GGTGAGTTGAGGACAGTTAAGAAC 59.249 45.833 0.00 0.00 0.00 3.01
2158 2173 3.485394 ACTTGTTATGTGCACATGGTGA 58.515 40.909 36.72 18.29 37.15 4.02
2205 2220 3.877508 GGGTATGCATGGTACTTTCTCAC 59.122 47.826 10.16 0.00 0.00 3.51
2333 2362 3.244561 TGTCCTGAACCTCACAAGAATCC 60.245 47.826 0.00 0.00 0.00 3.01
2467 2497 4.874970 ACACATTACGTCGTTCCTAAAGT 58.125 39.130 1.78 0.00 0.00 2.66
2474 2504 5.511088 AAGATTGACACATTACGTCGTTC 57.489 39.130 1.78 0.00 36.11 3.95
2481 2859 8.556194 TGTGTACAGAAAAGATTGACACATTAC 58.444 33.333 0.00 0.00 40.39 1.89
2537 2915 9.799106 ACATTTTATCTAATATCCACTCCCTTG 57.201 33.333 0.00 0.00 0.00 3.61
2574 2957 7.658179 ATGAACATATTAGGTACATTCAGCG 57.342 36.000 0.00 0.00 0.00 5.18
2653 3647 7.413438 GGTCTTGTAAATCATGCTAGTCACTTG 60.413 40.741 0.00 0.00 0.00 3.16
2674 3668 8.844244 CAAGCTATATGCATAAAAGAAGGTCTT 58.156 33.333 18.75 11.12 45.94 3.01
2741 3737 1.485066 AGGTCGATTAGGGTCGCAATT 59.515 47.619 0.00 0.00 41.22 2.32
2750 3749 3.899052 TGTTTACCCAGGTCGATTAGG 57.101 47.619 0.00 0.00 0.00 2.69
2813 3814 4.524328 GCCAGAGAAGGAAAATTGGAGAAA 59.476 41.667 0.00 0.00 0.00 2.52
2852 3853 5.769484 ACGTTATATAGGAGTGGTGACAG 57.231 43.478 0.00 0.00 44.46 3.51
2854 3855 8.239998 GGTAATACGTTATATAGGAGTGGTGAC 58.760 40.741 0.00 0.00 0.00 3.67
2897 3898 6.724441 TGATTCCACTGTAAGAGTTCCTTCTA 59.276 38.462 0.00 0.00 37.43 2.10
2945 3946 4.588106 TCATTCATGAGTTCCCAAGCAAAA 59.412 37.500 0.00 0.00 32.11 2.44
3015 4016 5.988310 TGGATCTTTGAATGCATTGAAGT 57.012 34.783 18.59 10.70 0.00 3.01
3016 4017 7.843490 AAATGGATCTTTGAATGCATTGAAG 57.157 32.000 18.59 18.95 44.05 3.02
3017 4018 7.878644 TGAAAATGGATCTTTGAATGCATTGAA 59.121 29.630 18.59 12.63 44.05 2.69
3018 4019 7.332430 GTGAAAATGGATCTTTGAATGCATTGA 59.668 33.333 18.59 5.30 44.05 2.57
3019 4020 7.333423 AGTGAAAATGGATCTTTGAATGCATTG 59.667 33.333 18.59 1.99 44.05 2.82
3020 4021 7.391620 AGTGAAAATGGATCTTTGAATGCATT 58.608 30.769 12.83 12.83 45.94 3.56
3021 4022 6.942976 AGTGAAAATGGATCTTTGAATGCAT 58.057 32.000 0.00 0.00 39.11 3.96
3022 4023 6.349243 AGTGAAAATGGATCTTTGAATGCA 57.651 33.333 0.00 0.00 0.00 3.96
3082 4083 1.305930 GGACATCGGGTTGAAGTGCC 61.306 60.000 0.00 0.00 31.34 5.01
3271 4273 6.101332 TGCAAAATCAATATTCTCAACTGCC 58.899 36.000 0.00 0.00 0.00 4.85
3277 4279 6.497437 CACCGATGCAAAATCAATATTCTCA 58.503 36.000 0.00 0.00 0.00 3.27
3494 4496 8.347062 AGGTAACCTACTTCTGAGAACAGAACA 61.347 40.741 8.32 0.63 43.65 3.18
3527 4529 0.035317 CTGTGCTGTTGCCCTCTACA 59.965 55.000 0.00 0.00 38.71 2.74
3533 4535 1.470098 CTATCAACTGTGCTGTTGCCC 59.530 52.381 14.41 0.00 44.83 5.36
3536 4538 7.710044 AGAATATCTCTATCAACTGTGCTGTTG 59.290 37.037 13.43 13.43 39.62 3.33
3620 4622 1.839424 ACTGCCAAATAAGAGCACCC 58.161 50.000 0.00 0.00 32.06 4.61
3647 4649 2.478894 GTGGTACATGTGTGTTCCTTCG 59.521 50.000 9.11 0.00 43.85 3.79
3692 4694 5.630661 ACTTATAAGTCGAGGGATGATCG 57.369 43.478 12.50 0.00 41.50 3.69
3753 4755 4.280677 CCAGTCAGGGTCTCTATCATTCTC 59.719 50.000 0.00 0.00 0.00 2.87
3783 4786 2.841442 AATTCCTAGGGCTGTATCGC 57.159 50.000 9.46 0.00 0.00 4.58
3826 4829 3.005155 AGTTTCTGTTTGATGAAGCAGGC 59.995 43.478 8.76 1.08 40.03 4.85
3829 4832 3.876914 ACGAGTTTCTGTTTGATGAAGCA 59.123 39.130 0.00 0.00 0.00 3.91
3849 4852 3.673338 TGTTCAAGATAACGCTGAAGACG 59.327 43.478 0.00 0.00 31.76 4.18
3859 4862 8.198109 TCTATAGGCAGTCTTGTTCAAGATAAC 58.802 37.037 16.55 9.69 0.00 1.89
3888 4891 1.413118 TCCTGTCAGTCAGCTGTTCA 58.587 50.000 14.67 6.29 43.05 3.18
3910 4913 4.640805 ACAAACGTTCTGTTGCTATACG 57.359 40.909 0.00 0.00 40.84 3.06
3948 4951 3.382546 GCCACCTACTTGCATTTGATGAT 59.617 43.478 0.00 0.00 0.00 2.45
3963 4966 3.252215 CAGACAAATTCAAACGCCACCTA 59.748 43.478 0.00 0.00 0.00 3.08
4004 5007 2.027625 GTGGCCGACAGACGAAAGG 61.028 63.158 0.00 0.00 45.77 3.11
4005 5008 2.027625 GGTGGCCGACAGACGAAAG 61.028 63.158 0.00 0.00 45.77 2.62
4007 5010 2.107041 ATTGGTGGCCGACAGACGAA 62.107 55.000 0.00 0.00 45.77 3.85
4009 5012 2.047274 ATTGGTGGCCGACAGACG 60.047 61.111 0.00 0.00 42.18 4.18
4010 5013 1.302511 ACATTGGTGGCCGACAGAC 60.303 57.895 0.00 0.00 0.00 3.51
4012 5015 3.266964 CACATTGGTGGCCGACAG 58.733 61.111 0.00 0.00 41.45 3.51
4055 5060 4.211389 CAAAGTAGCTAACAAGTTGCGTG 58.789 43.478 1.81 0.00 0.00 5.34
4106 5111 9.736023 ATAAAGCAAATCCGATATTTCTGAAAC 57.264 29.630 4.73 0.00 0.00 2.78
4223 5318 2.928801 AACAAATTGGCCCAAGGTTC 57.071 45.000 1.16 0.00 0.00 3.62
4274 5386 0.179059 TTCTTGCAGAACAGTGGCGA 60.179 50.000 0.00 0.00 0.00 5.54
4278 5390 3.567164 ACCTCAATTCTTGCAGAACAGTG 59.433 43.478 1.44 0.00 37.00 3.66
4286 5398 5.726980 AATGCTAAACCTCAATTCTTGCA 57.273 34.783 0.00 0.00 0.00 4.08
4287 5399 6.091305 GGAAAATGCTAAACCTCAATTCTTGC 59.909 38.462 0.00 0.00 0.00 4.01
4323 5435 2.741759 TGCAACTTATCAGTCGAGCA 57.258 45.000 0.00 0.00 34.60 4.26
4326 5438 5.468409 TGTCAATTTGCAACTTATCAGTCGA 59.532 36.000 0.00 0.00 30.45 4.20
4347 5459 0.586802 AAAAGCGGCGAACTCTTGTC 59.413 50.000 12.98 0.00 0.00 3.18
4349 5461 0.868406 AGAAAAGCGGCGAACTCTTG 59.132 50.000 12.98 0.00 0.00 3.02
4360 5472 5.631026 TGCAATCTAAGCTAAAGAAAAGCG 58.369 37.500 3.03 0.00 44.87 4.68
4409 5521 8.734386 CAACATCTTATATTTAGGAATGGAGGC 58.266 37.037 0.00 0.00 0.00 4.70
4420 5532 8.518430 TTTGAGCAGCCAACATCTTATATTTA 57.482 30.769 0.00 0.00 0.00 1.40
4422 5534 7.592885 ATTTGAGCAGCCAACATCTTATATT 57.407 32.000 0.00 0.00 0.00 1.28
4423 5535 8.696043 TTATTTGAGCAGCCAACATCTTATAT 57.304 30.769 0.00 0.00 0.00 0.86
4424 5536 8.518430 TTTATTTGAGCAGCCAACATCTTATA 57.482 30.769 0.00 0.00 0.00 0.98
4425 5537 7.408756 TTTATTTGAGCAGCCAACATCTTAT 57.591 32.000 0.00 0.00 0.00 1.73
4426 5538 6.832520 TTTATTTGAGCAGCCAACATCTTA 57.167 33.333 0.00 0.00 0.00 2.10
4427 5539 5.726980 TTTATTTGAGCAGCCAACATCTT 57.273 34.783 0.00 0.00 0.00 2.40
4428 5540 5.927281 ATTTATTTGAGCAGCCAACATCT 57.073 34.783 0.00 0.00 0.00 2.90
4429 5541 8.652810 ATTTATTTATTTGAGCAGCCAACATC 57.347 30.769 0.00 0.00 0.00 3.06
4431 5543 9.935241 TTTATTTATTTATTTGAGCAGCCAACA 57.065 25.926 0.00 0.00 0.00 3.33
4450 5562 9.308000 CCAGCCCCAACATCTTATATTTATTTA 57.692 33.333 0.00 0.00 0.00 1.40
4451 5563 7.789349 ACCAGCCCCAACATCTTATATTTATTT 59.211 33.333 0.00 0.00 0.00 1.40
4452 5564 7.233348 CACCAGCCCCAACATCTTATATTTATT 59.767 37.037 0.00 0.00 0.00 1.40
4453 5565 6.721208 CACCAGCCCCAACATCTTATATTTAT 59.279 38.462 0.00 0.00 0.00 1.40
4454 5566 6.068010 CACCAGCCCCAACATCTTATATTTA 58.932 40.000 0.00 0.00 0.00 1.40
4455 5567 4.895297 CACCAGCCCCAACATCTTATATTT 59.105 41.667 0.00 0.00 0.00 1.40
4456 5568 4.473444 CACCAGCCCCAACATCTTATATT 58.527 43.478 0.00 0.00 0.00 1.28
4457 5569 3.181429 CCACCAGCCCCAACATCTTATAT 60.181 47.826 0.00 0.00 0.00 0.86
4458 5570 2.174639 CCACCAGCCCCAACATCTTATA 59.825 50.000 0.00 0.00 0.00 0.98
4459 5571 1.063717 CCACCAGCCCCAACATCTTAT 60.064 52.381 0.00 0.00 0.00 1.73
4460 5572 0.331278 CCACCAGCCCCAACATCTTA 59.669 55.000 0.00 0.00 0.00 2.10
4461 5573 1.077265 CCACCAGCCCCAACATCTT 59.923 57.895 0.00 0.00 0.00 2.40
4462 5574 2.765969 CCACCAGCCCCAACATCT 59.234 61.111 0.00 0.00 0.00 2.90
4463 5575 2.362889 CCCACCAGCCCCAACATC 60.363 66.667 0.00 0.00 0.00 3.06
4464 5576 4.702274 GCCCACCAGCCCCAACAT 62.702 66.667 0.00 0.00 0.00 2.71
4478 5590 4.821589 CTCCTTCCTCGTGCGCCC 62.822 72.222 4.18 0.00 0.00 6.13
4479 5591 4.821589 CCTCCTTCCTCGTGCGCC 62.822 72.222 4.18 0.00 0.00 6.53
4480 5592 4.070552 ACCTCCTTCCTCGTGCGC 62.071 66.667 0.00 0.00 0.00 6.09
4481 5593 2.125912 CACCTCCTTCCTCGTGCG 60.126 66.667 0.00 0.00 0.00 5.34
4492 5604 0.322546 AAATCCAACGGCTCACCTCC 60.323 55.000 0.00 0.00 0.00 4.30
4517 5629 5.519206 CGGTCAATTAAGCAGTCTACCTTAC 59.481 44.000 0.00 0.00 0.00 2.34
4603 5715 1.464608 CAGCCCTCAATACACAACACG 59.535 52.381 0.00 0.00 0.00 4.49
4606 5718 2.489938 TCCAGCCCTCAATACACAAC 57.510 50.000 0.00 0.00 0.00 3.32
4614 5726 3.432186 CGAGATAAACATCCAGCCCTCAA 60.432 47.826 0.00 0.00 0.00 3.02
4632 5744 3.385193 TTCTTGCACATCAGAACGAGA 57.615 42.857 0.00 0.00 0.00 4.04
4642 5754 6.810182 GTCAGCAGATTTTTATTCTTGCACAT 59.190 34.615 0.00 0.00 0.00 3.21
4645 5757 6.151691 GTGTCAGCAGATTTTTATTCTTGCA 58.848 36.000 0.00 0.00 0.00 4.08
4648 5760 6.560253 ACGTGTCAGCAGATTTTTATTCTT 57.440 33.333 0.00 0.00 0.00 2.52
4649 5761 6.428159 AGAACGTGTCAGCAGATTTTTATTCT 59.572 34.615 0.00 0.00 0.00 2.40
4653 5765 6.371809 AAAGAACGTGTCAGCAGATTTTTA 57.628 33.333 0.00 0.00 0.00 1.52
4665 5777 2.409975 TCCGGATGAAAAGAACGTGTC 58.590 47.619 0.00 0.00 0.00 3.67
4681 5793 2.279517 GGTCGCTACATGCTCCGG 60.280 66.667 0.00 0.00 40.11 5.14
4682 5794 0.739462 TTTGGTCGCTACATGCTCCG 60.739 55.000 0.00 0.00 40.11 4.63
4685 5797 1.890876 TGTTTTGGTCGCTACATGCT 58.109 45.000 0.00 0.00 40.11 3.79
4686 5798 2.919666 ATGTTTTGGTCGCTACATGC 57.080 45.000 0.00 0.00 38.57 4.06
4687 5799 4.937696 TGTATGTTTTGGTCGCTACATG 57.062 40.909 0.00 0.00 33.58 3.21
4688 5800 4.142988 CGTTGTATGTTTTGGTCGCTACAT 60.143 41.667 0.00 0.00 35.55 2.29
4689 5801 3.184783 CGTTGTATGTTTTGGTCGCTACA 59.815 43.478 0.00 0.00 0.00 2.74
4690 5802 3.423907 CCGTTGTATGTTTTGGTCGCTAC 60.424 47.826 0.00 0.00 0.00 3.58
4691 5803 2.737783 CCGTTGTATGTTTTGGTCGCTA 59.262 45.455 0.00 0.00 0.00 4.26
4692 5804 1.533731 CCGTTGTATGTTTTGGTCGCT 59.466 47.619 0.00 0.00 0.00 4.93
4693 5805 1.532007 TCCGTTGTATGTTTTGGTCGC 59.468 47.619 0.00 0.00 0.00 5.19
4694 5806 3.881780 TTCCGTTGTATGTTTTGGTCG 57.118 42.857 0.00 0.00 0.00 4.79
4706 5818 1.837538 CGCCACATCGTTTCCGTTGT 61.838 55.000 0.00 0.00 45.28 3.32
4716 5828 3.490759 GTGCTCCACGCCACATCG 61.491 66.667 0.00 0.00 38.05 3.84
4763 5875 0.038526 GCCATATGGTCCTCGTACGG 60.039 60.000 22.79 6.09 37.57 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.