Multiple sequence alignment - TraesCS7A01G223500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G223500 chr7A 100.000 6298 0 0 348 6645 192673310 192667013 0.000000e+00 11631.0
1 TraesCS7A01G223500 chr7A 92.791 1290 83 8 2868 4151 93074083 93075368 0.000000e+00 1858.0
2 TraesCS7A01G223500 chr7A 85.227 1523 141 33 4246 5715 93075418 93076909 0.000000e+00 1489.0
3 TraesCS7A01G223500 chr7A 94.677 620 30 1 1082 1698 192818404 192817785 0.000000e+00 959.0
4 TraesCS7A01G223500 chr7A 93.925 428 22 4 662 1086 192831035 192830609 1.560000e-180 643.0
5 TraesCS7A01G223500 chr7A 84.709 654 69 19 990 1631 93072707 93073341 5.660000e-175 625.0
6 TraesCS7A01G223500 chr7A 87.097 186 23 1 2570 2755 93073861 93074045 6.750000e-50 209.0
7 TraesCS7A01G223500 chr7A 91.489 141 10 2 1801 1941 192817787 192817649 6.800000e-45 193.0
8 TraesCS7A01G223500 chr7A 80.556 252 38 6 349 590 90654954 90654704 4.090000e-42 183.0
9 TraesCS7A01G223500 chr7A 92.063 126 10 0 5729 5854 701309238 701309113 1.900000e-40 178.0
10 TraesCS7A01G223500 chr7A 86.957 161 16 3 5898 6056 93076986 93077143 6.850000e-40 176.0
11 TraesCS7A01G223500 chr7A 80.930 215 21 13 1798 1992 93073413 93073627 1.150000e-32 152.0
12 TraesCS7A01G223500 chr7A 93.333 90 5 1 4164 4252 58226124 58226035 1.500000e-26 132.0
13 TraesCS7A01G223500 chr7A 100.000 36 0 0 1 36 192673657 192673622 4.300000e-07 67.6
14 TraesCS7A01G223500 chr7D 95.200 3958 124 27 2649 6581 185139576 185135660 0.000000e+00 6196.0
15 TraesCS7A01G223500 chr7D 92.821 1365 87 9 2761 4118 91393588 91392228 0.000000e+00 1967.0
16 TraesCS7A01G223500 chr7D 86.061 1442 122 38 4343 5731 91392198 91390783 0.000000e+00 1476.0
17 TraesCS7A01G223500 chr7D 94.379 854 40 5 846 1698 185140965 185140119 0.000000e+00 1304.0
18 TraesCS7A01G223500 chr7D 95.218 481 23 0 1801 2281 185140121 185139641 0.000000e+00 761.0
19 TraesCS7A01G223500 chr7D 83.733 750 85 17 897 1631 91395409 91394682 0.000000e+00 675.0
20 TraesCS7A01G223500 chr7D 87.073 410 27 10 6173 6562 91390591 91390188 2.200000e-119 440.0
21 TraesCS7A01G223500 chr7D 87.647 170 16 4 5881 6048 91390725 91390559 6.800000e-45 193.0
22 TraesCS7A01G223500 chr7D 82.584 178 17 4 2570 2747 91394106 91393943 1.930000e-30 145.0
23 TraesCS7A01G223500 chr7D 91.919 99 5 2 4163 4259 6744966 6744869 1.160000e-27 135.0
24 TraesCS7A01G223500 chr7D 92.473 93 6 1 4161 4252 54836101 54836193 1.500000e-26 132.0
25 TraesCS7A01G223500 chr7D 100.000 70 0 0 2542 2611 185139650 185139581 5.410000e-26 130.0
26 TraesCS7A01G223500 chr7D 79.343 213 20 14 1801 2009 91394604 91394412 1.940000e-25 128.0
27 TraesCS7A01G223500 chr7B 95.585 3873 124 19 2542 6402 327276223 327272386 0.000000e+00 6161.0
28 TraesCS7A01G223500 chr7B 93.222 1254 81 3 2868 4118 43881783 43880531 0.000000e+00 1842.0
29 TraesCS7A01G223500 chr7B 92.636 937 37 12 772 1698 327277606 327276692 0.000000e+00 1319.0
30 TraesCS7A01G223500 chr7B 95.634 481 21 0 1801 2281 327276694 327276214 0.000000e+00 773.0
31 TraesCS7A01G223500 chr7B 86.685 721 51 21 4329 5014 43880510 43879800 0.000000e+00 758.0
32 TraesCS7A01G223500 chr7B 83.378 752 93 22 897 1631 43883259 43882523 0.000000e+00 667.0
33 TraesCS7A01G223500 chr7B 86.356 601 55 15 5141 5731 43879804 43879221 1.220000e-176 630.0
34 TraesCS7A01G223500 chr7B 88.940 434 44 4 348 777 327279034 327278601 3.530000e-147 532.0
35 TraesCS7A01G223500 chr7B 87.042 409 29 11 6173 6562 43879032 43878629 2.200000e-119 440.0
36 TraesCS7A01G223500 chr7B 91.852 270 18 3 2280 2546 537744274 537744006 2.260000e-99 374.0
37 TraesCS7A01G223500 chr7B 88.757 169 13 4 5881 6048 43879163 43879000 1.130000e-47 202.0
38 TraesCS7A01G223500 chr7B 83.710 221 24 5 2542 2755 43882040 43881825 1.460000e-46 198.0
39 TraesCS7A01G223500 chr7B 84.456 193 16 5 1808 1986 43882436 43882244 1.900000e-40 178.0
40 TraesCS7A01G223500 chr4A 92.216 668 45 6 3424 4089 439068900 439068238 0.000000e+00 939.0
41 TraesCS7A01G223500 chr4A 92.308 182 14 0 4369 4550 439068241 439068060 6.610000e-65 259.0
42 TraesCS7A01G223500 chr4A 89.595 173 15 2 4624 4795 439068064 439067894 4.040000e-52 217.0
43 TraesCS7A01G223500 chr4A 92.857 126 8 1 5729 5854 381220473 381220597 1.470000e-41 182.0
44 TraesCS7A01G223500 chr4A 79.920 249 45 4 349 594 3340366 3340612 1.900000e-40 178.0
45 TraesCS7A01G223500 chr4D 82.282 666 77 18 5929 6561 189583325 189583982 7.580000e-149 538.0
46 TraesCS7A01G223500 chr3B 92.989 271 15 3 2279 2546 690724811 690725080 6.250000e-105 392.0
47 TraesCS7A01G223500 chr3B 95.833 120 5 0 1696 1815 705143443 705143324 1.890000e-45 195.0
48 TraesCS7A01G223500 chr3B 100.000 29 0 0 1060 1088 581975998 581975970 3.000000e-03 54.7
49 TraesCS7A01G223500 chr4B 92.884 267 17 2 2280 2546 5276435 5276699 2.910000e-103 387.0
50 TraesCS7A01G223500 chr4B 91.791 134 8 3 1676 1809 482619814 482619944 4.090000e-42 183.0
51 TraesCS7A01G223500 chrUn 91.760 267 19 3 2280 2546 313607379 313607642 1.050000e-97 368.0
52 TraesCS7A01G223500 chrUn 91.386 267 20 3 2280 2546 313569801 313570064 4.900000e-96 363.0
53 TraesCS7A01G223500 chrUn 91.386 267 20 3 2280 2546 313573560 313573823 4.900000e-96 363.0
54 TraesCS7A01G223500 chrUn 91.386 267 20 3 2280 2546 354026065 354026328 4.900000e-96 363.0
55 TraesCS7A01G223500 chrUn 80.328 244 35 6 349 581 291810899 291810658 8.860000e-39 172.0
56 TraesCS7A01G223500 chrUn 80.328 244 35 6 349 581 362620421 362620662 8.860000e-39 172.0
57 TraesCS7A01G223500 chrUn 90.476 126 11 1 5729 5854 52974728 52974604 1.480000e-36 165.0
58 TraesCS7A01G223500 chr2B 91.450 269 21 2 2279 2546 36604067 36603800 1.050000e-97 368.0
59 TraesCS7A01G223500 chr2B 92.063 126 10 0 5729 5854 458623620 458623495 1.900000e-40 178.0
60 TraesCS7A01G223500 chr5B 91.418 268 20 3 2280 2546 398643876 398644141 1.360000e-96 364.0
61 TraesCS7A01G223500 chr5B 100.000 108 0 0 1695 1802 558558589 558558696 4.060000e-47 200.0
62 TraesCS7A01G223500 chr5B 90.476 126 12 0 5729 5854 617821213 617821338 4.120000e-37 167.0
63 TraesCS7A01G223500 chr5B 94.318 88 5 0 4161 4248 402737540 402737627 1.160000e-27 135.0
64 TraesCS7A01G223500 chr5B 94.318 88 5 0 4161 4248 411517291 411517378 1.160000e-27 135.0
65 TraesCS7A01G223500 chr6A 100.000 112 0 0 1695 1806 596351528 596351417 2.430000e-49 207.0
66 TraesCS7A01G223500 chr6A 86.525 141 18 1 5714 5854 88080410 88080549 3.210000e-33 154.0
67 TraesCS7A01G223500 chr6A 100.000 30 0 0 6616 6645 64502469 64502498 1.000000e-03 56.5
68 TraesCS7A01G223500 chr6D 98.276 116 0 2 1692 1806 382979488 382979374 1.130000e-47 202.0
69 TraesCS7A01G223500 chr1B 99.107 112 1 0 1696 1807 15616935 15616824 1.130000e-47 202.0
70 TraesCS7A01G223500 chr1B 93.407 91 4 1 4161 4251 662552694 662552782 4.180000e-27 134.0
71 TraesCS7A01G223500 chr2D 96.667 120 4 0 1688 1807 627971505 627971624 4.060000e-47 200.0
72 TraesCS7A01G223500 chr2A 95.161 124 4 2 1696 1818 179352280 179352158 1.890000e-45 195.0
73 TraesCS7A01G223500 chr2A 92.593 135 9 1 1678 1811 79319134 79319268 6.800000e-45 193.0
74 TraesCS7A01G223500 chr2A 80.591 237 41 5 349 581 677158085 677157850 1.900000e-40 178.0
75 TraesCS7A01G223500 chr5A 80.645 248 35 6 349 585 31936937 31937182 5.290000e-41 180.0
76 TraesCS7A01G223500 chr5A 80.328 244 35 6 349 581 31629659 31629900 8.860000e-39 172.0
77 TraesCS7A01G223500 chr6B 92.063 126 9 1 5729 5854 146149469 146149593 6.850000e-40 176.0
78 TraesCS7A01G223500 chr6B 93.258 89 6 0 4162 4250 233032412 233032500 1.500000e-26 132.0
79 TraesCS7A01G223500 chr3A 79.151 259 41 6 351 598 568030371 568030115 4.120000e-37 167.0
80 TraesCS7A01G223500 chr3A 96.970 33 0 1 1060 1092 585034834 585034803 3.000000e-03 54.7
81 TraesCS7A01G223500 chr1A 94.253 87 5 0 4162 4248 527083929 527084015 4.180000e-27 134.0
82 TraesCS7A01G223500 chr1D 93.258 89 4 2 4164 4251 307349155 307349242 5.410000e-26 130.0
83 TraesCS7A01G223500 chr3D 100.000 29 0 0 1060 1088 444072711 444072683 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G223500 chr7A 192667013 192673657 6644 True 5849.300000 11631 100.000000 1 6645 2 chr7A.!!$R5 6644
1 TraesCS7A01G223500 chr7A 93072707 93077143 4436 False 751.500000 1858 86.285167 990 6056 6 chr7A.!!$F1 5066
2 TraesCS7A01G223500 chr7A 192817649 192818404 755 True 576.000000 959 93.083000 1082 1941 2 chr7A.!!$R6 859
3 TraesCS7A01G223500 chr7D 185135660 185140965 5305 True 2097.750000 6196 96.199250 846 6581 4 chr7D.!!$R3 5735
4 TraesCS7A01G223500 chr7D 91390188 91395409 5221 True 717.714286 1967 85.608857 897 6562 7 chr7D.!!$R2 5665
5 TraesCS7A01G223500 chr7B 327272386 327279034 6648 True 2196.250000 6161 93.198750 348 6402 4 chr7B.!!$R3 6054
6 TraesCS7A01G223500 chr7B 43878629 43883259 4630 True 614.375000 1842 86.700750 897 6562 8 chr7B.!!$R2 5665
7 TraesCS7A01G223500 chr4A 439067894 439068900 1006 True 471.666667 939 91.373000 3424 4795 3 chr4A.!!$R1 1371
8 TraesCS7A01G223500 chr4D 189583325 189583982 657 False 538.000000 538 82.282000 5929 6561 1 chr4D.!!$F1 632
9 TraesCS7A01G223500 chrUn 313569801 313573823 4022 False 363.000000 363 91.386000 2280 2546 2 chrUn.!!$F4 266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 386 0.041833 TGTTGAGGAGGGGGAGAGAG 59.958 60.0 0.00 0.00 0.00 3.20 F
1711 2800 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.00 4.55 F
1712 2801 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 F
1805 2894 0.102481 CCGAACGGAGGGAGTACATG 59.898 60.0 7.53 0.00 37.50 3.21 F
2348 3499 0.179086 AAAGCAAAGGCAACCAACGG 60.179 50.0 0.00 0.00 44.61 4.44 F
2462 3613 0.393077 CTACGGAATGGCCCCTACAG 59.607 60.0 0.00 0.00 0.00 2.74 F
3525 6145 0.744771 GTGCCCTGAGATTCCGTTCC 60.745 60.0 0.00 0.00 0.00 3.62 F
4958 9383 0.487325 TCCTGTCTCCCTGACTCCAA 59.513 55.0 0.00 0.00 45.54 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 2874 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55 R
3366 5986 1.076438 CAGGTTCCCCTCCTTTTCCT 58.924 55.000 0.00 0.00 39.89 3.36 R
3525 6145 1.105457 TGTCACGGGGTATCCTAACG 58.895 55.000 0.00 0.00 0.00 3.18 R
3819 6439 4.131596 GCCTGGCAAAATGAAATGCATAT 58.868 39.130 15.17 0.00 44.32 1.78 R
4280 8651 1.703513 ACTCACCCAAACTTCTACCCC 59.296 52.381 0.00 0.00 0.00 4.95 R
4958 9383 2.432874 TCATGATCGACGGGTGGTAAAT 59.567 45.455 0.00 0.00 0.00 1.40 R
5430 9870 1.202818 GGTTCTGGTCTCAAGCCAAGT 60.203 52.381 0.00 0.00 35.32 3.16 R
6148 10641 0.449388 CATGCGGTCTCTTTTCAGCC 59.551 55.000 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.045926 CGGGTGGCAAGGAGGAAG 60.046 66.667 0.00 0.00 0.00 3.46
18 19 2.361737 GGGTGGCAAGGAGGAAGC 60.362 66.667 0.00 0.00 0.00 3.86
19 20 2.747855 GGTGGCAAGGAGGAAGCG 60.748 66.667 0.00 0.00 0.00 4.68
20 21 2.747855 GTGGCAAGGAGGAAGCGG 60.748 66.667 0.00 0.00 0.00 5.52
21 22 4.722700 TGGCAAGGAGGAAGCGGC 62.723 66.667 0.00 0.00 0.00 6.53
22 23 4.416738 GGCAAGGAGGAAGCGGCT 62.417 66.667 0.00 0.00 0.00 5.52
23 24 3.130160 GCAAGGAGGAAGCGGCTG 61.130 66.667 1.81 0.00 0.00 4.85
24 25 2.665000 CAAGGAGGAAGCGGCTGA 59.335 61.111 1.81 0.00 0.00 4.26
25 26 1.449246 CAAGGAGGAAGCGGCTGAG 60.449 63.158 1.81 0.00 0.00 3.35
26 27 2.664081 AAGGAGGAAGCGGCTGAGG 61.664 63.158 1.81 0.00 0.00 3.86
27 28 3.077556 GGAGGAAGCGGCTGAGGA 61.078 66.667 1.81 0.00 0.00 3.71
28 29 2.498726 GAGGAAGCGGCTGAGGAG 59.501 66.667 1.81 0.00 0.00 3.69
29 30 3.731653 GAGGAAGCGGCTGAGGAGC 62.732 68.421 1.81 0.00 45.40 4.70
374 375 6.318648 GTGCCACATAAGATAAATGTTGAGGA 59.681 38.462 0.00 0.00 35.39 3.71
376 377 6.016777 GCCACATAAGATAAATGTTGAGGAGG 60.017 42.308 0.00 0.00 35.39 4.30
385 386 0.041833 TGTTGAGGAGGGGGAGAGAG 59.958 60.000 0.00 0.00 0.00 3.20
410 411 9.136323 AGAAATCATAGGAAAAGTGTTGTCTTT 57.864 29.630 0.00 0.00 39.00 2.52
451 452 8.753133 TGATCTCTTAACATAATGTGTCTCACT 58.247 33.333 0.00 0.00 41.14 3.41
521 522 8.716674 AACCCATTATAGACGTCCTTCTATTA 57.283 34.615 13.01 0.00 39.21 0.98
522 523 8.896722 ACCCATTATAGACGTCCTTCTATTAT 57.103 34.615 13.01 4.25 39.21 1.28
581 582 8.564574 CACTGTTTTATTAACCACTGTACATGT 58.435 33.333 2.69 2.69 0.00 3.21
589 590 7.956420 TTAACCACTGTACATGTTCTTAGTG 57.044 36.000 2.30 13.01 36.27 2.74
605 606 5.224888 TCTTAGTGTTTTGCTATCGTCGTT 58.775 37.500 0.00 0.00 0.00 3.85
637 638 2.530177 GACGAGCGTCATCTTCATCAA 58.470 47.619 17.21 0.00 44.02 2.57
645 646 1.739466 TCATCTTCATCAAGGCAACGC 59.261 47.619 0.00 0.00 46.39 4.84
647 648 0.320334 TCTTCATCAAGGCAACGCGA 60.320 50.000 15.93 0.00 46.39 5.87
664 665 0.460311 CGACACCTGATAGTGGGACC 59.540 60.000 0.00 0.00 42.28 4.46
667 668 1.285280 CACCTGATAGTGGGACCCAA 58.715 55.000 16.98 0.00 34.18 4.12
674 675 4.288398 TGATAGTGGGACCCAACGTTATA 58.712 43.478 16.98 2.15 34.18 0.98
679 681 5.326900 AGTGGGACCCAACGTTATATTTTT 58.673 37.500 16.98 0.00 34.18 1.94
702 704 1.148310 CAAACGTCTGCAATCGACCT 58.852 50.000 15.34 0.00 0.00 3.85
704 706 2.930040 CAAACGTCTGCAATCGACCTAT 59.070 45.455 15.34 0.00 0.00 2.57
708 710 3.181475 ACGTCTGCAATCGACCTATCAAT 60.181 43.478 15.34 0.00 0.00 2.57
742 744 3.623703 ACTGCCAGCACAATTATGATGA 58.376 40.909 2.98 0.00 38.27 2.92
744 746 3.623703 TGCCAGCACAATTATGATGAGT 58.376 40.909 2.98 0.00 38.27 3.41
748 750 5.290158 GCCAGCACAATTATGATGAGTTTTG 59.710 40.000 2.98 0.00 38.27 2.44
749 751 5.290158 CCAGCACAATTATGATGAGTTTTGC 59.710 40.000 2.98 0.00 38.27 3.68
752 756 6.930164 AGCACAATTATGATGAGTTTTGCAAA 59.070 30.769 8.05 8.05 0.00 3.68
806 1812 6.682423 TTCAGCGTTCACAAATATGATGAT 57.318 33.333 0.00 0.00 0.00 2.45
831 1837 2.490903 GTGCACTTTACTCGTAGGGAGA 59.509 50.000 10.32 0.00 46.23 3.71
832 1838 2.753452 TGCACTTTACTCGTAGGGAGAG 59.247 50.000 0.00 0.00 46.23 3.20
833 1839 3.015327 GCACTTTACTCGTAGGGAGAGA 58.985 50.000 0.00 0.00 46.23 3.10
839 1845 0.551879 CTCGTAGGGAGAGAAGGGGA 59.448 60.000 0.00 0.00 46.23 4.81
843 1849 2.050918 GTAGGGAGAGAAGGGGATTGG 58.949 57.143 0.00 0.00 0.00 3.16
854 1860 3.226537 GGATTGGCGGATTGGGGC 61.227 66.667 0.00 0.00 0.00 5.80
1524 2559 8.462016 AGTTAATTTACTGGCAATTGAGTGATC 58.538 33.333 10.34 0.00 0.00 2.92
1589 2626 9.739276 TGAATTTCTCCCATATGTTCCATATAC 57.261 33.333 1.24 0.00 0.00 1.47
1700 2789 2.360794 GCGAACTGCGAACTACTCC 58.639 57.895 0.00 0.00 44.57 3.85
1701 2790 1.077089 GCGAACTGCGAACTACTCCC 61.077 60.000 0.00 0.00 44.57 4.30
1702 2791 0.526662 CGAACTGCGAACTACTCCCT 59.473 55.000 0.00 0.00 44.57 4.20
1703 2792 1.467713 CGAACTGCGAACTACTCCCTC 60.468 57.143 0.00 0.00 44.57 4.30
1704 2793 0.896226 AACTGCGAACTACTCCCTCC 59.104 55.000 0.00 0.00 0.00 4.30
1705 2794 1.313812 ACTGCGAACTACTCCCTCCG 61.314 60.000 0.00 0.00 0.00 4.63
1706 2795 1.303888 TGCGAACTACTCCCTCCGT 60.304 57.895 0.00 0.00 0.00 4.69
1707 2796 0.896940 TGCGAACTACTCCCTCCGTT 60.897 55.000 0.00 0.00 0.00 4.44
1708 2797 0.179142 GCGAACTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 34.07 3.95
1710 2799 0.455005 GAACTACTCCCTCCGTTCGG 59.545 60.000 4.74 4.74 0.00 4.30
1711 2800 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
1712 2801 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1713 2802 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
1714 2803 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
1715 2804 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1716 2805 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1717 2806 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1718 2807 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1719 2808 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1720 2809 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1721 2810 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1722 2811 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1723 2812 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1724 2813 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1725 2814 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
1726 2815 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
1727 2816 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
1728 2817 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
1729 2818 6.400727 CGTTCGGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
1730 2819 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
1731 2820 5.350365 TCGGAATTACTTGTCTCGAAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
1732 2821 5.350365 CGGAATTACTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
1733 2822 6.037172 CGGAATTACTTGTCTCGAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
1734 2823 7.189512 GGAATTACTTGTCTCGAAAATGGATG 58.810 38.462 0.00 0.00 0.00 3.51
1735 2824 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
1736 2825 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
1737 2826 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
1738 2827 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
1739 2828 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
1740 2829 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
1741 2830 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
1742 2831 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
1743 2832 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
1744 2833 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
1745 2834 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
1746 2835 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
1747 2836 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
1773 2862 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
1774 2863 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
1775 2864 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
1776 2865 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
1777 2866 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
1778 2867 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
1779 2868 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
1780 2869 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
1781 2870 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
1782 2871 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
1783 2872 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
1784 2873 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
1785 2874 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
1786 2875 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
1787 2876 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
1788 2877 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
1789 2878 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
1790 2879 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
1791 2880 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
1792 2881 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
1793 2882 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
1794 2883 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
1795 2884 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
1796 2885 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1797 2886 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1798 2887 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1799 2888 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1800 2889 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1801 2890 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1802 2891 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
1805 2894 0.102481 CCGAACGGAGGGAGTACATG 59.898 60.000 7.53 0.00 37.50 3.21
2052 3160 2.671396 GCAACCTACTTCATGTACGGTG 59.329 50.000 0.00 0.00 34.89 4.94
2130 3254 4.202121 TGAAAACAGAGCTTCAGTACGAGT 60.202 41.667 0.00 0.00 0.00 4.18
2220 3370 5.061684 GCCTAATTAATTGTTGTGGCGAAAC 59.938 40.000 11.05 0.00 0.00 2.78
2275 3426 6.154706 TGGTTTGTTACAACTTTGGTTATGGT 59.845 34.615 0.00 0.00 33.88 3.55
2276 3427 7.042950 GGTTTGTTACAACTTTGGTTATGGTT 58.957 34.615 0.00 0.00 33.88 3.67
2277 3428 8.196103 GGTTTGTTACAACTTTGGTTATGGTTA 58.804 33.333 0.00 0.00 33.88 2.85
2278 3429 9.240159 GTTTGTTACAACTTTGGTTATGGTTAG 57.760 33.333 0.00 0.00 33.88 2.34
2344 3495 3.340814 TTGAAAAAGCAAAGGCAACCA 57.659 38.095 0.00 0.00 44.61 3.67
2347 3498 1.650825 AAAAGCAAAGGCAACCAACG 58.349 45.000 0.00 0.00 44.61 4.10
2348 3499 0.179086 AAAGCAAAGGCAACCAACGG 60.179 50.000 0.00 0.00 44.61 4.44
2406 3557 5.688807 AGCCACAGCAGAATTATTACAGAT 58.311 37.500 0.00 0.00 43.56 2.90
2427 3578 9.868277 ACAGATTCAAACATCAAACAGTTTTAA 57.132 25.926 0.00 0.00 35.90 1.52
2448 3599 8.767478 TTTAAAAATCCACTAGAGAACTACGG 57.233 34.615 0.00 0.00 0.00 4.02
2453 3604 3.952323 TCCACTAGAGAACTACGGAATGG 59.048 47.826 0.00 0.00 0.00 3.16
2460 3611 0.835276 AACTACGGAATGGCCCCTAC 59.165 55.000 0.00 0.00 0.00 3.18
2462 3613 0.393077 CTACGGAATGGCCCCTACAG 59.607 60.000 0.00 0.00 0.00 2.74
2463 3614 1.052124 TACGGAATGGCCCCTACAGG 61.052 60.000 0.00 0.00 0.00 4.00
2474 3625 1.906574 CCCCTACAGGAACTACAAGCA 59.093 52.381 0.00 0.00 36.02 3.91
2476 3627 2.354805 CCCTACAGGAACTACAAGCACC 60.355 54.545 0.00 0.00 36.02 5.01
2508 3659 1.048160 TCCCTACAGGCGCATCATCA 61.048 55.000 10.83 0.00 34.51 3.07
2798 5413 7.123830 CGGTATGTCGGATTATTTTCTTTGAC 58.876 38.462 0.00 0.00 0.00 3.18
2877 5493 3.121738 ACGTCCTACCTTTTCCTTGTG 57.878 47.619 0.00 0.00 0.00 3.33
2879 5495 3.642848 ACGTCCTACCTTTTCCTTGTGTA 59.357 43.478 0.00 0.00 0.00 2.90
2882 5498 4.041321 GTCCTACCTTTTCCTTGTGTACCT 59.959 45.833 0.00 0.00 0.00 3.08
2896 5512 7.332430 TCCTTGTGTACCTGTTGTTATAAATCG 59.668 37.037 0.00 0.00 0.00 3.34
3108 5725 7.044181 TGTTTGGTACTTTGATTGATTTGCAA 58.956 30.769 0.00 0.00 41.53 4.08
3158 5777 7.201785 CCAACACCTAGAACACTGTTTACAATT 60.202 37.037 0.00 0.00 0.00 2.32
3197 5817 7.772757 TCCCTTCATTTATGTTTGTTGCTTTTT 59.227 29.630 0.00 0.00 0.00 1.94
3366 5986 4.378666 GCGAGGTTAATTTTACCGCTTCAA 60.379 41.667 6.73 0.00 40.69 2.69
3525 6145 0.744771 GTGCCCTGAGATTCCGTTCC 60.745 60.000 0.00 0.00 0.00 3.62
3842 6462 1.071857 TGCATTTCATTTTGCCAGGCA 59.928 42.857 11.22 11.22 38.08 4.75
4138 7571 3.996921 TTTGCAATATTTGGTGGGCAT 57.003 38.095 0.00 0.00 0.00 4.40
4268 8639 9.953697 GGAGTATATACTAAGAACTCACACTTG 57.046 37.037 15.42 0.00 38.63 3.16
4280 8651 8.498054 AGAACTCACACTTGATTACATATTGG 57.502 34.615 0.00 0.00 0.00 3.16
4958 9383 0.487325 TCCTGTCTCCCTGACTCCAA 59.513 55.000 0.00 0.00 45.54 3.53
4974 9399 1.555992 TCCAATTTACCACCCGTCGAT 59.444 47.619 0.00 0.00 0.00 3.59
4975 9400 1.937899 CCAATTTACCACCCGTCGATC 59.062 52.381 0.00 0.00 0.00 3.69
4976 9401 2.623535 CAATTTACCACCCGTCGATCA 58.376 47.619 0.00 0.00 0.00 2.92
4977 9402 3.202906 CAATTTACCACCCGTCGATCAT 58.797 45.455 0.00 0.00 0.00 2.45
4978 9403 2.303163 TTTACCACCCGTCGATCATG 57.697 50.000 0.00 0.00 0.00 3.07
4979 9404 1.476477 TTACCACCCGTCGATCATGA 58.524 50.000 0.00 0.00 0.00 3.07
4980 9405 1.476477 TACCACCCGTCGATCATGAA 58.524 50.000 0.00 0.00 0.00 2.57
4981 9406 0.830648 ACCACCCGTCGATCATGAAT 59.169 50.000 0.00 0.00 0.00 2.57
5025 9450 7.396055 TGGGTTGTAGAATTATCCCTTGAAAAG 59.604 37.037 0.00 0.00 45.69 2.27
5115 9554 5.196695 GTTTGAGCCCTTATCCTCATTCTT 58.803 41.667 0.00 0.00 37.87 2.52
5230 9670 2.811431 CCAGTGAGGTTAATGCGACAAA 59.189 45.455 0.00 0.00 0.00 2.83
5430 9870 8.458052 CCATAGTACAAAATTGCAATGTCAGTA 58.542 33.333 13.82 11.20 0.00 2.74
5560 10012 0.386985 GAGAACTCGTCGACGCCTTT 60.387 55.000 32.19 22.78 39.60 3.11
5854 10306 0.109723 TTTTTGGGACGGAGGGAGTG 59.890 55.000 0.00 0.00 0.00 3.51
5985 10473 5.239525 AGCAACTCTTTGAATAAAGCTCGTT 59.760 36.000 0.00 0.00 42.40 3.85
6020 10508 8.430801 AAATTCTGTAGCTACAATGTCTGATC 57.569 34.615 25.95 0.00 35.50 2.92
6029 10517 8.604640 AGCTACAATGTCTGATCAATAATCTG 57.395 34.615 0.00 0.00 35.24 2.90
6148 10641 6.417191 ACTATAACAGTACATTTTGCCGTG 57.583 37.500 0.00 0.00 34.98 4.94
6163 10656 1.291877 CCGTGGCTGAAAAGAGACCG 61.292 60.000 0.00 0.00 0.00 4.79
6165 10658 0.884704 GTGGCTGAAAAGAGACCGCA 60.885 55.000 0.00 0.00 0.00 5.69
6166 10659 0.036732 TGGCTGAAAAGAGACCGCAT 59.963 50.000 0.00 0.00 0.00 4.73
6195 10699 6.321181 TCCTGATGAATTACCTTTTATGCCAC 59.679 38.462 0.00 0.00 0.00 5.01
6259 10763 5.824624 TGAATAAGGAAGCTGAAATGCCTAG 59.175 40.000 0.00 0.00 0.00 3.02
6345 10849 5.219343 TGAACTATAGCCCAGATCATGTG 57.781 43.478 0.00 0.00 0.00 3.21
6360 10864 6.318144 CAGATCATGTGAAACTGGAGCTATTT 59.682 38.462 0.00 0.00 34.96 1.40
6391 10895 4.475016 ACTAATACATCCAGCCTCCAGTTT 59.525 41.667 0.00 0.00 0.00 2.66
6405 10916 1.263217 CCAGTTTTCTTGTTCGACGGG 59.737 52.381 0.00 0.00 0.00 5.28
6409 10920 1.860676 TTTCTTGTTCGACGGGACAG 58.139 50.000 0.00 0.00 0.00 3.51
6418 10931 4.142026 TGTTCGACGGGACAGATAAATCAT 60.142 41.667 0.00 0.00 0.00 2.45
6419 10932 5.068067 TGTTCGACGGGACAGATAAATCATA 59.932 40.000 0.00 0.00 0.00 2.15
6504 11024 8.396390 CAGGAACATATCACTTCATCTTTTCAG 58.604 37.037 0.00 0.00 0.00 3.02
6564 11093 4.715527 TGACATGTCAGTCTCATCAGAG 57.284 45.455 24.56 0.00 39.27 3.35
6578 11107 6.642131 GTCTCATCAGAGTGATCTAATTGAGC 59.358 42.308 0.00 0.00 42.66 4.26
6581 11110 8.186709 TCATCAGAGTGATCTAATTGAGCATA 57.813 34.615 0.00 0.00 43.41 3.14
6582 11111 8.813951 TCATCAGAGTGATCTAATTGAGCATAT 58.186 33.333 0.00 0.00 43.41 1.78
6586 11115 9.315525 CAGAGTGATCTAATTGAGCATATATGG 57.684 37.037 14.51 0.00 43.41 2.74
6587 11116 8.484575 AGAGTGATCTAATTGAGCATATATGGG 58.515 37.037 14.51 0.00 43.41 4.00
6588 11117 7.052873 AGTGATCTAATTGAGCATATATGGGC 58.947 38.462 14.51 0.88 43.41 5.36
6589 11118 6.825213 GTGATCTAATTGAGCATATATGGGCA 59.175 38.462 14.51 0.00 43.41 5.36
6590 11119 7.501559 GTGATCTAATTGAGCATATATGGGCAT 59.498 37.037 14.51 0.00 43.41 4.40
6591 11120 8.057011 TGATCTAATTGAGCATATATGGGCATT 58.943 33.333 14.51 0.82 36.01 3.56
6592 11121 8.834004 ATCTAATTGAGCATATATGGGCATTT 57.166 30.769 14.51 0.00 0.00 2.32
6593 11122 8.284945 TCTAATTGAGCATATATGGGCATTTC 57.715 34.615 14.51 0.00 0.00 2.17
6594 11123 6.921486 AATTGAGCATATATGGGCATTTCA 57.079 33.333 14.51 0.00 0.00 2.69
6595 11124 7.490657 AATTGAGCATATATGGGCATTTCAT 57.509 32.000 14.51 0.00 0.00 2.57
6596 11125 8.598202 AATTGAGCATATATGGGCATTTCATA 57.402 30.769 14.51 0.00 0.00 2.15
6597 11126 8.777578 ATTGAGCATATATGGGCATTTCATAT 57.222 30.769 14.51 0.00 39.99 1.78
6598 11127 7.576861 TGAGCATATATGGGCATTTCATATG 57.423 36.000 14.51 0.00 38.05 1.78
6599 11128 7.348033 TGAGCATATATGGGCATTTCATATGA 58.652 34.615 14.51 0.00 38.05 2.15
6600 11129 7.283807 TGAGCATATATGGGCATTTCATATGAC 59.716 37.037 14.51 0.00 38.05 3.06
6601 11130 7.120716 AGCATATATGGGCATTTCATATGACA 58.879 34.615 14.51 0.00 38.05 3.58
6602 11131 7.616542 AGCATATATGGGCATTTCATATGACAA 59.383 33.333 14.51 4.03 38.05 3.18
6603 11132 7.703621 GCATATATGGGCATTTCATATGACAAC 59.296 37.037 14.51 0.00 38.05 3.32
6604 11133 8.963725 CATATATGGGCATTTCATATGACAACT 58.036 33.333 4.48 0.00 38.05 3.16
6606 11135 8.938801 ATATGGGCATTTCATATGACAACTAA 57.061 30.769 4.48 0.00 36.70 2.24
6607 11136 7.658525 ATGGGCATTTCATATGACAACTAAA 57.341 32.000 4.48 0.00 0.00 1.85
6608 11137 7.473735 TGGGCATTTCATATGACAACTAAAA 57.526 32.000 4.48 0.00 0.00 1.52
6609 11138 8.076910 TGGGCATTTCATATGACAACTAAAAT 57.923 30.769 4.48 0.00 0.00 1.82
6610 11139 9.194972 TGGGCATTTCATATGACAACTAAAATA 57.805 29.630 4.48 0.00 0.00 1.40
6611 11140 9.463443 GGGCATTTCATATGACAACTAAAATAC 57.537 33.333 4.48 0.00 0.00 1.89
6612 11141 9.169468 GGCATTTCATATGACAACTAAAATACG 57.831 33.333 4.48 0.00 0.00 3.06
6613 11142 9.716507 GCATTTCATATGACAACTAAAATACGT 57.283 29.630 4.48 0.00 0.00 3.57
6617 11146 8.415192 TCATATGACAACTAAAATACGTGTCC 57.585 34.615 0.00 0.00 0.00 4.02
6618 11147 8.035984 TCATATGACAACTAAAATACGTGTCCA 58.964 33.333 0.00 0.00 0.00 4.02
6619 11148 8.661257 CATATGACAACTAAAATACGTGTCCAA 58.339 33.333 0.00 0.00 0.00 3.53
6620 11149 6.922247 TGACAACTAAAATACGTGTCCAAA 57.078 33.333 0.00 0.00 0.00 3.28
6621 11150 7.499321 TGACAACTAAAATACGTGTCCAAAT 57.501 32.000 0.00 0.00 0.00 2.32
6622 11151 8.604640 TGACAACTAAAATACGTGTCCAAATA 57.395 30.769 0.00 0.00 0.00 1.40
6623 11152 9.053840 TGACAACTAAAATACGTGTCCAAATAA 57.946 29.630 0.00 0.00 0.00 1.40
6624 11153 9.537848 GACAACTAAAATACGTGTCCAAATAAG 57.462 33.333 0.00 0.00 0.00 1.73
6625 11154 9.059260 ACAACTAAAATACGTGTCCAAATAAGT 57.941 29.630 0.00 0.00 0.00 2.24
6626 11155 9.887406 CAACTAAAATACGTGTCCAAATAAGTT 57.113 29.630 0.00 0.00 0.00 2.66
6627 11156 9.887406 AACTAAAATACGTGTCCAAATAAGTTG 57.113 29.630 0.00 0.00 36.94 3.16
6628 11157 9.275398 ACTAAAATACGTGTCCAAATAAGTTGA 57.725 29.630 0.00 0.00 39.87 3.18
6631 11160 9.974980 AAAATACGTGTCCAAATAAGTTGAATT 57.025 25.926 0.00 0.00 39.87 2.17
6632 11161 9.620660 AAATACGTGTCCAAATAAGTTGAATTC 57.379 29.630 0.00 0.00 39.87 2.17
6633 11162 6.627395 ACGTGTCCAAATAAGTTGAATTCA 57.373 33.333 3.38 3.38 39.87 2.57
6634 11163 7.033530 ACGTGTCCAAATAAGTTGAATTCAA 57.966 32.000 16.91 16.91 39.87 2.69
6635 11164 7.484975 ACGTGTCCAAATAAGTTGAATTCAAA 58.515 30.769 22.07 7.95 39.87 2.69
6636 11165 8.141268 ACGTGTCCAAATAAGTTGAATTCAAAT 58.859 29.630 22.07 18.55 39.87 2.32
6637 11166 8.977505 CGTGTCCAAATAAGTTGAATTCAAATT 58.022 29.630 29.90 29.90 44.78 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.045926 CTTCCTCCTTGCCACCCG 60.046 66.667 0.00 0.00 0.00 5.28
2 3 2.747855 CGCTTCCTCCTTGCCACC 60.748 66.667 0.00 0.00 0.00 4.61
3 4 2.747855 CCGCTTCCTCCTTGCCAC 60.748 66.667 0.00 0.00 0.00 5.01
4 5 4.722700 GCCGCTTCCTCCTTGCCA 62.723 66.667 0.00 0.00 0.00 4.92
5 6 4.416738 AGCCGCTTCCTCCTTGCC 62.417 66.667 0.00 0.00 0.00 4.52
6 7 3.130160 CAGCCGCTTCCTCCTTGC 61.130 66.667 0.00 0.00 0.00 4.01
7 8 1.449246 CTCAGCCGCTTCCTCCTTG 60.449 63.158 0.00 0.00 0.00 3.61
8 9 2.664081 CCTCAGCCGCTTCCTCCTT 61.664 63.158 0.00 0.00 0.00 3.36
9 10 3.080121 CCTCAGCCGCTTCCTCCT 61.080 66.667 0.00 0.00 0.00 3.69
10 11 3.077556 TCCTCAGCCGCTTCCTCC 61.078 66.667 0.00 0.00 0.00 4.30
11 12 2.498726 CTCCTCAGCCGCTTCCTC 59.501 66.667 0.00 0.00 0.00 3.71
12 13 3.780173 GCTCCTCAGCCGCTTCCT 61.780 66.667 0.00 0.00 40.14 3.36
13 14 2.883267 ATTGCTCCTCAGCCGCTTCC 62.883 60.000 0.00 0.00 46.26 3.46
14 15 1.028868 AATTGCTCCTCAGCCGCTTC 61.029 55.000 0.00 0.00 46.26 3.86
15 16 0.610232 AAATTGCTCCTCAGCCGCTT 60.610 50.000 0.00 0.00 46.26 4.68
16 17 1.001641 AAATTGCTCCTCAGCCGCT 60.002 52.632 0.00 0.00 46.26 5.52
17 18 1.138247 CAAATTGCTCCTCAGCCGC 59.862 57.895 0.00 0.00 46.26 6.53
370 371 2.325484 GATTTCTCTCTCCCCCTCCTC 58.675 57.143 0.00 0.00 0.00 3.71
374 375 3.472848 TCCTATGATTTCTCTCTCCCCCT 59.527 47.826 0.00 0.00 0.00 4.79
376 377 5.896073 TTTCCTATGATTTCTCTCTCCCC 57.104 43.478 0.00 0.00 0.00 4.81
385 386 9.185192 CAAAGACAACACTTTTCCTATGATTTC 57.815 33.333 0.00 0.00 37.91 2.17
462 463 9.749340 ACCCTTGTGTTTAATAGCTAGTAATTT 57.251 29.630 13.93 0.00 0.00 1.82
487 488 8.242739 GGACGTCTATAATGGGTTATCTCTTAC 58.757 40.741 16.46 0.00 32.84 2.34
581 582 5.224888 ACGACGATAGCAAAACACTAAGAA 58.775 37.500 0.00 0.00 42.67 2.52
589 590 5.610409 CGCTATTAAACGACGATAGCAAAAC 59.390 40.000 19.95 0.00 45.28 2.43
605 606 1.135603 ACGCTCGTCACACGCTATTAA 60.136 47.619 0.00 0.00 42.21 1.40
627 628 0.729116 CGCGTTGCCTTGATGAAGAT 59.271 50.000 0.00 0.00 0.00 2.40
634 635 2.970324 GGTGTCGCGTTGCCTTGA 60.970 61.111 5.77 0.00 0.00 3.02
637 638 1.884075 TATCAGGTGTCGCGTTGCCT 61.884 55.000 5.77 9.16 0.00 4.75
645 646 0.460311 GGTCCCACTATCAGGTGTCG 59.540 60.000 0.00 0.00 35.63 4.35
647 648 0.118346 TGGGTCCCACTATCAGGTGT 59.882 55.000 6.47 0.00 35.63 4.16
679 681 2.475111 GTCGATTGCAGACGTTTGAGAA 59.525 45.455 10.75 1.93 0.00 2.87
690 692 3.384668 ACGATTGATAGGTCGATTGCAG 58.615 45.455 1.49 0.00 40.11 4.41
693 695 5.965334 CCAAAAACGATTGATAGGTCGATTG 59.035 40.000 1.49 4.40 40.11 2.67
702 704 4.683781 GCAGTTTGCCAAAAACGATTGATA 59.316 37.500 0.00 0.00 37.42 2.15
704 706 2.863137 GCAGTTTGCCAAAAACGATTGA 59.137 40.909 0.00 0.00 37.42 2.57
728 730 6.709145 TTGCAAAACTCATCATAATTGTGC 57.291 33.333 0.00 0.00 0.00 4.57
779 1785 8.672815 TCATCATATTTGTGAACGCTGAATAAA 58.327 29.630 0.00 0.00 0.00 1.40
799 1805 6.072508 ACGAGTAAAGTGCACAAAATCATCAT 60.073 34.615 21.04 0.00 0.00 2.45
806 1812 3.810941 CCCTACGAGTAAAGTGCACAAAA 59.189 43.478 21.04 0.00 0.00 2.44
830 1836 0.183731 AATCCGCCAATCCCCTTCTC 59.816 55.000 0.00 0.00 0.00 2.87
831 1837 0.106519 CAATCCGCCAATCCCCTTCT 60.107 55.000 0.00 0.00 0.00 2.85
832 1838 1.109323 CCAATCCGCCAATCCCCTTC 61.109 60.000 0.00 0.00 0.00 3.46
833 1839 1.076044 CCAATCCGCCAATCCCCTT 60.076 57.895 0.00 0.00 0.00 3.95
961 1974 3.124921 GATGGAACGTGTGCGGGG 61.125 66.667 0.00 0.00 43.45 5.73
1071 2098 4.787280 AGGTGGAGGGAGAGGCGG 62.787 72.222 0.00 0.00 0.00 6.13
1524 2559 6.007703 TCTTTACCAGTTTATTTGTGAGGGG 58.992 40.000 0.00 0.00 0.00 4.79
1589 2626 5.656416 ACCACCAACTAACAATCCCAATATG 59.344 40.000 0.00 0.00 0.00 1.78
1649 2689 4.883585 TCAAGCAATTATGTAAGCCCTCTG 59.116 41.667 0.00 0.00 0.00 3.35
1698 2787 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1699 2788 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1700 2789 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1701 2790 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1702 2791 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
1703 2792 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
1704 2793 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
1705 2794 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
1706 2795 6.128391 CCATTTTCGAGACAAGTAATTCCGAA 60.128 38.462 0.00 0.00 33.57 4.30
1707 2796 5.350365 CCATTTTCGAGACAAGTAATTCCGA 59.650 40.000 0.00 0.00 0.00 4.55
1708 2797 5.350365 TCCATTTTCGAGACAAGTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
1709 2798 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
1710 2799 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
1711 2800 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
1712 2801 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
1713 2802 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
1714 2803 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
1715 2804 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
1716 2805 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
1717 2806 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
1718 2807 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
1719 2808 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
1720 2809 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
1721 2810 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
1747 2836 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
1748 2837 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
1749 2838 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
1750 2839 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
1751 2840 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
1752 2841 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
1753 2842 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
1754 2843 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
1755 2844 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
1756 2845 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
1757 2846 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
1758 2847 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
1759 2848 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
1760 2849 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
1761 2850 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
1762 2851 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
1763 2852 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
1764 2853 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
1765 2854 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
1766 2855 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
1767 2856 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
1768 2857 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
1769 2858 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
1770 2859 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
1771 2860 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
1772 2861 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
1773 2862 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
1774 2863 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
1775 2864 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1776 2865 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1777 2866 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1778 2867 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1779 2868 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1780 2869 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1781 2870 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1782 2871 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1783 2872 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1784 2873 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
1785 2874 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
1786 2875 0.102481 CATGTACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
1787 2876 0.815734 ACATGTACTCCCTCCGTTCG 59.184 55.000 0.00 0.00 0.00 3.95
1788 2877 3.243771 CCATACATGTACTCCCTCCGTTC 60.244 52.174 7.96 0.00 0.00 3.95
1789 2878 2.698797 CCATACATGTACTCCCTCCGTT 59.301 50.000 7.96 0.00 0.00 4.44
1790 2879 2.091499 TCCATACATGTACTCCCTCCGT 60.091 50.000 7.96 0.00 0.00 4.69
1791 2880 2.594131 TCCATACATGTACTCCCTCCG 58.406 52.381 7.96 0.00 0.00 4.63
1792 2881 4.160329 TGATCCATACATGTACTCCCTCC 58.840 47.826 7.96 0.00 0.00 4.30
1793 2882 4.835615 ACTGATCCATACATGTACTCCCTC 59.164 45.833 7.96 2.91 0.00 4.30
1794 2883 4.820775 ACTGATCCATACATGTACTCCCT 58.179 43.478 7.96 0.00 0.00 4.20
1795 2884 5.300752 CAACTGATCCATACATGTACTCCC 58.699 45.833 7.96 0.00 0.00 4.30
1796 2885 5.163301 ACCAACTGATCCATACATGTACTCC 60.163 44.000 7.96 0.00 0.00 3.85
1797 2886 5.918608 ACCAACTGATCCATACATGTACTC 58.081 41.667 7.96 3.94 0.00 2.59
1798 2887 5.957771 ACCAACTGATCCATACATGTACT 57.042 39.130 7.96 0.00 0.00 2.73
1799 2888 8.677148 AATTACCAACTGATCCATACATGTAC 57.323 34.615 7.96 0.00 0.00 2.90
1800 2889 9.119418 CAAATTACCAACTGATCCATACATGTA 57.881 33.333 8.27 8.27 0.00 2.29
1801 2890 7.833682 TCAAATTACCAACTGATCCATACATGT 59.166 33.333 2.69 2.69 0.00 3.21
1802 2891 8.131100 GTCAAATTACCAACTGATCCATACATG 58.869 37.037 0.00 0.00 0.00 3.21
1805 2894 7.336931 ACAGTCAAATTACCAACTGATCCATAC 59.663 37.037 8.24 0.00 41.26 2.39
2118 3238 1.995484 CCATGTGCACTCGTACTGAAG 59.005 52.381 19.41 0.00 0.00 3.02
2124 3248 0.682292 TGAACCCATGTGCACTCGTA 59.318 50.000 19.41 0.00 0.00 3.43
2130 3254 4.322574 CCACAAAATATGAACCCATGTGCA 60.323 41.667 0.00 0.00 33.46 4.57
2248 3398 7.713073 CCATAACCAAAGTTGTAACAAACCAAT 59.287 33.333 0.00 0.00 36.68 3.16
2344 3495 2.628657 AGAGCTGTAAACTCTGTCCGTT 59.371 45.455 0.00 0.00 42.88 4.44
2347 3498 2.416162 CCGAGAGCTGTAAACTCTGTCC 60.416 54.545 0.00 0.00 44.50 4.02
2348 3499 2.869897 CCGAGAGCTGTAAACTCTGTC 58.130 52.381 0.00 0.00 44.50 3.51
2378 3529 6.538742 TGTAATAATTCTGCTGTGGCTACTTC 59.461 38.462 0.64 0.00 39.59 3.01
2422 3573 9.211485 CCGTAGTTCTCTAGTGGATTTTTAAAA 57.789 33.333 0.00 0.00 0.00 1.52
2423 3574 8.587608 TCCGTAGTTCTCTAGTGGATTTTTAAA 58.412 33.333 0.00 0.00 31.23 1.52
2427 3578 6.600882 TTCCGTAGTTCTCTAGTGGATTTT 57.399 37.500 0.00 0.00 34.19 1.82
2430 3581 4.585162 CCATTCCGTAGTTCTCTAGTGGAT 59.415 45.833 0.00 0.00 34.19 3.41
2447 3598 0.106669 GTTCCTGTAGGGGCCATTCC 60.107 60.000 4.39 0.00 35.41 3.01
2448 3599 0.919710 AGTTCCTGTAGGGGCCATTC 59.080 55.000 4.39 0.00 35.41 2.67
2453 3604 1.407025 GCTTGTAGTTCCTGTAGGGGC 60.407 57.143 0.00 0.00 35.41 5.80
2460 3611 1.673033 CCTCGGTGCTTGTAGTTCCTG 60.673 57.143 0.00 0.00 0.00 3.86
2462 3613 1.019805 GCCTCGGTGCTTGTAGTTCC 61.020 60.000 0.00 0.00 0.00 3.62
2463 3614 0.320421 TGCCTCGGTGCTTGTAGTTC 60.320 55.000 0.00 0.00 0.00 3.01
2474 3625 2.584391 GGGAGTTCAGTGCCTCGGT 61.584 63.158 4.26 0.00 0.00 4.69
2476 3627 0.173708 GTAGGGAGTTCAGTGCCTCG 59.826 60.000 0.00 0.00 39.40 4.63
2508 3659 2.148446 TGCTTAGAATTGCCTGGCAT 57.852 45.000 24.03 8.63 38.76 4.40
2647 4920 6.927294 AATCCCAATACTCGAAACAGAATC 57.073 37.500 0.00 0.00 0.00 2.52
2798 5413 5.109210 TGTGTTATTGTCCTGCTAAGATCG 58.891 41.667 0.00 0.00 0.00 3.69
2877 5493 9.578439 AGTTAGTCGATTTATAACAACAGGTAC 57.422 33.333 12.36 0.00 32.92 3.34
2879 5495 8.932791 CAAGTTAGTCGATTTATAACAACAGGT 58.067 33.333 12.36 0.00 32.92 4.00
2882 5498 7.604927 AGGCAAGTTAGTCGATTTATAACAACA 59.395 33.333 12.36 0.00 32.92 3.33
2896 5512 2.494059 TGACAAGCAGGCAAGTTAGTC 58.506 47.619 0.00 0.00 26.55 2.59
3087 5704 9.770097 TTAAATTGCAAATCAATCAAAGTACCA 57.230 25.926 1.71 0.00 44.23 3.25
3108 5725 7.037586 TGGAGAAGTCCCAATAGACAGTTAAAT 60.038 37.037 0.00 0.00 43.15 1.40
3158 5777 9.709495 CATAAATGAAGGGAATCTTTTCAAACA 57.291 29.630 4.64 0.00 35.50 2.83
3197 5817 3.084039 GCTTGAACATTGGATCCTGTCA 58.916 45.455 14.23 7.56 0.00 3.58
3366 5986 1.076438 CAGGTTCCCCTCCTTTTCCT 58.924 55.000 0.00 0.00 39.89 3.36
3525 6145 1.105457 TGTCACGGGGTATCCTAACG 58.895 55.000 0.00 0.00 0.00 3.18
3819 6439 4.131596 GCCTGGCAAAATGAAATGCATAT 58.868 39.130 15.17 0.00 44.32 1.78
3842 6462 8.757982 TTCCGAGTACTTATCTACCAAATACT 57.242 34.615 0.00 0.00 0.00 2.12
4131 7564 2.991250 ACTATCAGTGAACATGCCCAC 58.009 47.619 0.00 9.35 0.00 4.61
4138 7571 4.973168 AGCCTTTCAACTATCAGTGAACA 58.027 39.130 0.00 0.00 0.00 3.18
4200 8568 7.700022 AGATCGTTTAGGTCACTAAAGTAGT 57.300 36.000 0.53 0.00 46.69 2.73
4237 8605 9.223099 GTGAGTTCTTAGTATATACTCCCTCTC 57.777 40.741 18.68 18.22 37.73 3.20
4268 8639 7.230712 CCAAACTTCTACCCCCAATATGTAATC 59.769 40.741 0.00 0.00 0.00 1.75
4280 8651 1.703513 ACTCACCCAAACTTCTACCCC 59.296 52.381 0.00 0.00 0.00 4.95
4958 9383 2.432874 TCATGATCGACGGGTGGTAAAT 59.567 45.455 0.00 0.00 0.00 1.40
4976 9401 7.713507 CCCAAGCACAAATAATCATGAATTCAT 59.286 33.333 15.36 15.36 36.96 2.57
4977 9402 7.042950 CCCAAGCACAAATAATCATGAATTCA 58.957 34.615 11.26 11.26 0.00 2.57
4978 9403 7.043565 ACCCAAGCACAAATAATCATGAATTC 58.956 34.615 0.00 0.00 0.00 2.17
4979 9404 6.949715 ACCCAAGCACAAATAATCATGAATT 58.050 32.000 0.00 0.00 0.00 2.17
4980 9405 6.549433 ACCCAAGCACAAATAATCATGAAT 57.451 33.333 0.00 0.00 0.00 2.57
4981 9406 5.999205 ACCCAAGCACAAATAATCATGAA 57.001 34.783 0.00 0.00 0.00 2.57
5025 9450 1.376037 CAAAGGGCGACAGGAGGAC 60.376 63.158 0.00 0.00 0.00 3.85
5115 9554 3.242478 CGTTCGTGGTTCAGCTAAACAAA 60.242 43.478 1.31 0.00 36.26 2.83
5230 9670 5.301551 TGCATAGACACACCAAAAGTCATTT 59.698 36.000 0.00 0.00 34.80 2.32
5242 9682 1.372087 GGGCAGCTGCATAGACACAC 61.372 60.000 37.63 18.02 44.36 3.82
5430 9870 1.202818 GGTTCTGGTCTCAAGCCAAGT 60.203 52.381 0.00 0.00 35.32 3.16
5985 10473 2.736721 GCTACAGAATTTCTCACGTGCA 59.263 45.455 11.67 0.00 0.00 4.57
6020 10508 5.863935 TCACGTGACTGAAGACAGATTATTG 59.136 40.000 15.76 0.00 46.03 1.90
6029 10517 2.927477 TGTTTGTCACGTGACTGAAGAC 59.073 45.455 39.62 29.41 44.99 3.01
6148 10641 0.449388 CATGCGGTCTCTTTTCAGCC 59.551 55.000 0.00 0.00 0.00 4.85
6163 10656 6.645790 AAGGTAATTCATCAGGAATCATGC 57.354 37.500 0.00 0.00 45.46 4.06
6166 10659 8.632679 GCATAAAAGGTAATTCATCAGGAATCA 58.367 33.333 0.00 0.00 45.46 2.57
6195 10699 4.572985 TCACATCAAAGCCTTTTCACAG 57.427 40.909 0.00 0.00 0.00 3.66
6316 10820 5.957771 TCTGGGCTATAGTTCATCAGTTT 57.042 39.130 0.84 0.00 0.00 2.66
6332 10836 1.747355 CCAGTTTCACATGATCTGGGC 59.253 52.381 18.27 0.00 40.01 5.36
6345 10849 7.044798 AGTGATCTGTAAATAGCTCCAGTTTC 58.955 38.462 0.00 0.00 0.00 2.78
6360 10864 6.077993 AGGCTGGATGTATTAGTGATCTGTA 58.922 40.000 0.00 0.00 0.00 2.74
6391 10895 1.034356 TCTGTCCCGTCGAACAAGAA 58.966 50.000 0.00 0.00 0.00 2.52
6419 10932 9.886132 TTGTACTCTAGTTCTCAAAAGTTCTTT 57.114 29.630 0.00 0.00 0.00 2.52
6483 11002 8.316946 TCAGACTGAAAAGATGAAGTGATATGT 58.683 33.333 1.64 0.00 0.00 2.29
6504 11024 5.363939 AGATCTTCCAATTCGGATTCAGAC 58.636 41.667 0.00 0.00 45.80 3.51
6564 11093 6.825213 TGCCCATATATGCTCAATTAGATCAC 59.175 38.462 7.24 0.00 0.00 3.06
6566 11095 8.461249 AATGCCCATATATGCTCAATTAGATC 57.539 34.615 7.24 0.00 0.00 2.75
6571 11100 6.921486 TGAAATGCCCATATATGCTCAATT 57.079 33.333 7.24 6.37 0.00 2.32
6574 11103 7.283807 GTCATATGAAATGCCCATATATGCTCA 59.716 37.037 7.07 7.30 35.95 4.26
6578 11107 8.963725 AGTTGTCATATGAAATGCCCATATATG 58.036 33.333 7.07 5.68 35.95 1.78
6581 11110 8.938801 TTAGTTGTCATATGAAATGCCCATAT 57.061 30.769 7.07 0.00 37.62 1.78
6582 11111 8.759481 TTTAGTTGTCATATGAAATGCCCATA 57.241 30.769 7.07 0.00 0.00 2.74
6583 11112 7.658525 TTTAGTTGTCATATGAAATGCCCAT 57.341 32.000 7.07 0.00 0.00 4.00
6584 11113 7.473735 TTTTAGTTGTCATATGAAATGCCCA 57.526 32.000 7.07 0.00 0.00 5.36
6585 11114 9.463443 GTATTTTAGTTGTCATATGAAATGCCC 57.537 33.333 7.07 0.00 0.00 5.36
6586 11115 9.169468 CGTATTTTAGTTGTCATATGAAATGCC 57.831 33.333 7.07 0.00 0.00 4.40
6587 11116 9.716507 ACGTATTTTAGTTGTCATATGAAATGC 57.283 29.630 7.07 4.75 0.00 3.56
6591 11120 8.875803 GGACACGTATTTTAGTTGTCATATGAA 58.124 33.333 7.07 0.00 0.00 2.57
6592 11121 8.035984 TGGACACGTATTTTAGTTGTCATATGA 58.964 33.333 0.00 0.00 0.00 2.15
6593 11122 8.192068 TGGACACGTATTTTAGTTGTCATATG 57.808 34.615 0.00 0.00 0.00 1.78
6594 11123 8.780846 TTGGACACGTATTTTAGTTGTCATAT 57.219 30.769 0.00 0.00 0.00 1.78
6595 11124 8.604640 TTTGGACACGTATTTTAGTTGTCATA 57.395 30.769 0.00 0.00 0.00 2.15
6596 11125 7.499321 TTTGGACACGTATTTTAGTTGTCAT 57.501 32.000 0.00 0.00 0.00 3.06
6597 11126 6.922247 TTTGGACACGTATTTTAGTTGTCA 57.078 33.333 0.00 0.00 0.00 3.58
6598 11127 9.537848 CTTATTTGGACACGTATTTTAGTTGTC 57.462 33.333 0.00 0.00 0.00 3.18
6599 11128 9.059260 ACTTATTTGGACACGTATTTTAGTTGT 57.941 29.630 0.00 0.00 0.00 3.32
6600 11129 9.887406 AACTTATTTGGACACGTATTTTAGTTG 57.113 29.630 0.00 0.00 0.00 3.16
6601 11130 9.887406 CAACTTATTTGGACACGTATTTTAGTT 57.113 29.630 0.00 0.00 0.00 2.24
6602 11131 9.275398 TCAACTTATTTGGACACGTATTTTAGT 57.725 29.630 0.00 0.00 35.69 2.24
6605 11134 9.974980 AATTCAACTTATTTGGACACGTATTTT 57.025 25.926 0.00 0.00 35.69 1.82
6606 11135 9.620660 GAATTCAACTTATTTGGACACGTATTT 57.379 29.630 0.00 0.00 35.69 1.40
6607 11136 8.788806 TGAATTCAACTTATTTGGACACGTATT 58.211 29.630 5.45 0.00 35.69 1.89
6608 11137 8.330466 TGAATTCAACTTATTTGGACACGTAT 57.670 30.769 5.45 0.00 35.69 3.06
6609 11138 7.731882 TGAATTCAACTTATTTGGACACGTA 57.268 32.000 5.45 0.00 35.69 3.57
6610 11139 6.627395 TGAATTCAACTTATTTGGACACGT 57.373 33.333 5.45 0.00 35.69 4.49
6611 11140 7.922505 TTTGAATTCAACTTATTTGGACACG 57.077 32.000 20.35 0.00 35.28 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.