Multiple sequence alignment - TraesCS7A01G223400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G223400 chr7A 100.000 4992 0 0 1 4992 192662132 192667123 0.000000e+00 9219.0
1 TraesCS7A01G223400 chr7A 84.615 91 9 4 2995 3080 108210516 108210426 8.900000e-13 86.1
2 TraesCS7A01G223400 chr7D 90.407 2679 168 39 234 2880 185130562 185133183 0.000000e+00 3441.0
3 TraesCS7A01G223400 chr7D 86.946 1195 96 19 3434 4610 185134064 185135216 0.000000e+00 1288.0
4 TraesCS7A01G223400 chr7D 89.619 472 33 14 2872 3339 185133268 185133727 2.000000e-163 586.0
5 TraesCS7A01G223400 chr7D 86.555 119 10 4 4798 4914 185135543 185135657 5.250000e-25 126.0
6 TraesCS7A01G223400 chr7B 90.277 2633 180 36 276 2880 327267514 327270098 0.000000e+00 3374.0
7 TraesCS7A01G223400 chr7B 85.643 1811 146 38 3079 4842 327270309 327272052 0.000000e+00 1799.0
8 TraesCS7A01G223400 chr7B 97.183 71 2 0 4844 4914 327272081 327272151 2.440000e-23 121.0
9 TraesCS7A01G223400 chr6A 83.312 1564 174 43 1000 2530 106798305 106799814 0.000000e+00 1362.0
10 TraesCS7A01G223400 chr6A 83.779 561 75 7 3485 4038 106800536 106801087 7.410000e-143 518.0
11 TraesCS7A01G223400 chr6A 88.406 69 7 1 4844 4911 64502537 64502469 1.150000e-11 82.4
12 TraesCS7A01G223400 chr6D 83.024 1561 187 40 1000 2530 88774935 88776447 0.000000e+00 1343.0
13 TraesCS7A01G223400 chr6D 79.463 969 131 39 1096 2045 5762632 5761713 4.240000e-175 625.0
14 TraesCS7A01G223400 chr6D 86.804 341 37 1 3698 4038 88777712 88778044 1.700000e-99 374.0
15 TraesCS7A01G223400 chr6D 81.667 180 21 5 2710 2880 88776623 88776799 6.740000e-29 139.0
16 TraesCS7A01G223400 chr6D 85.870 92 7 6 2994 3080 87367652 87367562 5.320000e-15 93.5
17 TraesCS7A01G223400 chr6D 91.045 67 5 1 4842 4907 357271615 357271681 6.880000e-14 89.8
18 TraesCS7A01G223400 chr6B 82.277 1546 199 44 1000 2526 169108187 169109676 0.000000e+00 1267.0
19 TraesCS7A01G223400 chr6B 83.480 569 70 11 3485 4038 169110432 169110991 4.460000e-140 508.0
20 TraesCS7A01G223400 chr6B 77.907 172 25 9 2710 2880 169109780 169109939 1.480000e-15 95.3
21 TraesCS7A01G223400 chr2B 91.579 95 2 2 2992 3080 799358729 799358823 5.250000e-25 126.0
22 TraesCS7A01G223400 chr2B 92.941 85 1 1 3001 3080 799358823 799358739 8.780000e-23 119.0
23 TraesCS7A01G223400 chr2B 78.846 156 33 0 1096 1251 755624908 755624753 6.830000e-19 106.0
24 TraesCS7A01G223400 chr5B 85.859 99 12 2 40 137 560437468 560437371 2.460000e-18 104.0
25 TraesCS7A01G223400 chr1D 89.286 84 6 3 2998 3081 466992197 466992277 8.840000e-18 102.0
26 TraesCS7A01G223400 chr1A 81.102 127 15 7 4847 4967 283860300 283860423 5.320000e-15 93.5
27 TraesCS7A01G223400 chr3B 86.364 88 5 6 3000 3081 296634570 296634484 6.880000e-14 89.8
28 TraesCS7A01G223400 chr3B 86.047 86 5 6 3001 3080 296634485 296634569 8.900000e-13 86.1
29 TraesCS7A01G223400 chr3B 82.524 103 11 6 3001 3097 802705151 802705050 3.200000e-12 84.2
30 TraesCS7A01G223400 chr3A 80.645 124 17 5 4844 4966 467093791 467093908 6.880000e-14 89.8
31 TraesCS7A01G223400 chr3A 87.654 81 1 5 3007 3080 733517658 733517736 8.900000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G223400 chr7A 192662132 192667123 4991 False 9219.000000 9219 100.000000 1 4992 1 chr7A.!!$F1 4991
1 TraesCS7A01G223400 chr7D 185130562 185135657 5095 False 1360.250000 3441 88.381750 234 4914 4 chr7D.!!$F1 4680
2 TraesCS7A01G223400 chr7B 327267514 327272151 4637 False 1764.666667 3374 91.034333 276 4914 3 chr7B.!!$F1 4638
3 TraesCS7A01G223400 chr6A 106798305 106801087 2782 False 940.000000 1362 83.545500 1000 4038 2 chr6A.!!$F1 3038
4 TraesCS7A01G223400 chr6D 5761713 5762632 919 True 625.000000 625 79.463000 1096 2045 1 chr6D.!!$R1 949
5 TraesCS7A01G223400 chr6D 88774935 88778044 3109 False 618.666667 1343 83.831667 1000 4038 3 chr6D.!!$F2 3038
6 TraesCS7A01G223400 chr6B 169108187 169110991 2804 False 623.433333 1267 81.221333 1000 4038 3 chr6B.!!$F1 3038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.176219 TTGTGTGTTCGTTCCCTCGT 59.824 50.000 0.0 0.00 0.00 4.18 F
115 116 0.176219 TGTGTGTTCGTTCCCTCGTT 59.824 50.000 0.0 0.00 0.00 3.85 F
176 177 0.251653 TTGTGAGCGGAGGGAGTAGT 60.252 55.000 0.0 0.00 0.00 2.73 F
389 392 0.460987 CAGAGGAAGCTAACCTGCGG 60.461 60.000 15.7 6.24 37.93 5.69 F
1218 1225 0.460987 GCGTGGATGAGGACAAGGAG 60.461 60.000 0.0 0.00 0.00 3.69 F
1353 1360 0.687354 GCACCCTTCTCTCACTCCAA 59.313 55.000 0.0 0.00 0.00 3.53 F
1824 1853 0.740737 CCGGGGCTTCAACATCATTC 59.259 55.000 0.0 0.00 0.00 2.67 F
3023 3285 1.128200 CCCTCCGTCCCATAATGTGA 58.872 55.000 0.0 0.00 0.00 3.58 F
3796 4520 1.002659 TGGGACACTGGTAATTCGGTG 59.997 52.381 4.9 4.90 46.43 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1019 1026 0.398318 AGAGAAGTGTGGGCAAGGAC 59.602 55.000 0.00 0.00 0.00 3.85 R
1775 1803 1.068402 TCAATTGCAGCACCAACATCG 60.068 47.619 0.00 0.00 0.00 3.84 R
1806 1835 1.462616 TGAATGATGTTGAAGCCCCG 58.537 50.000 0.00 0.00 0.00 5.73 R
3157 3420 1.065199 ACCTCACATCGGCAATCACAT 60.065 47.619 0.00 0.00 0.00 3.21 R
3187 3450 0.756294 TTCCTCAAGTCAGGCGAACA 59.244 50.000 0.00 0.00 32.91 3.18 R
3226 3489 2.044793 AATTCTCCTCACACTCCCCA 57.955 50.000 0.00 0.00 0.00 4.96 R
3377 3641 0.031010 GGTATGAGAGGAGGGGGTGT 60.031 60.000 0.00 0.00 0.00 4.16 R
3946 4670 0.753479 ATCGTGGAGGTCTCAGCGAT 60.753 55.000 16.83 16.83 40.41 4.58 R
4750 5593 0.976641 ACTGAGCGGGAGACATTTGA 59.023 50.000 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.691049 TTTTTGCAGTTCGTTCAGAGG 57.309 42.857 0.00 0.00 0.00 3.69
43 44 2.325583 TTTGCAGTTCGTTCAGAGGT 57.674 45.000 0.00 0.00 0.00 3.85
44 45 3.462483 TTTGCAGTTCGTTCAGAGGTA 57.538 42.857 0.00 0.00 0.00 3.08
45 46 2.724977 TGCAGTTCGTTCAGAGGTAG 57.275 50.000 0.00 0.00 0.00 3.18
46 47 1.961394 TGCAGTTCGTTCAGAGGTAGT 59.039 47.619 0.00 0.00 0.00 2.73
47 48 3.151554 TGCAGTTCGTTCAGAGGTAGTA 58.848 45.455 0.00 0.00 0.00 1.82
48 49 3.762288 TGCAGTTCGTTCAGAGGTAGTAT 59.238 43.478 0.00 0.00 0.00 2.12
49 50 4.945543 TGCAGTTCGTTCAGAGGTAGTATA 59.054 41.667 0.00 0.00 0.00 1.47
50 51 5.416639 TGCAGTTCGTTCAGAGGTAGTATAA 59.583 40.000 0.00 0.00 0.00 0.98
51 52 5.972382 GCAGTTCGTTCAGAGGTAGTATAAG 59.028 44.000 0.00 0.00 0.00 1.73
52 53 6.183360 GCAGTTCGTTCAGAGGTAGTATAAGA 60.183 42.308 0.00 0.00 0.00 2.10
53 54 7.468906 GCAGTTCGTTCAGAGGTAGTATAAGAT 60.469 40.741 0.00 0.00 0.00 2.40
54 55 8.407064 CAGTTCGTTCAGAGGTAGTATAAGATT 58.593 37.037 0.00 0.00 0.00 2.40
55 56 8.968969 AGTTCGTTCAGAGGTAGTATAAGATTT 58.031 33.333 0.00 0.00 0.00 2.17
56 57 9.583765 GTTCGTTCAGAGGTAGTATAAGATTTT 57.416 33.333 0.00 0.00 0.00 1.82
57 58 9.798994 TTCGTTCAGAGGTAGTATAAGATTTTC 57.201 33.333 0.00 0.00 0.00 2.29
58 59 9.186837 TCGTTCAGAGGTAGTATAAGATTTTCT 57.813 33.333 0.00 0.00 0.00 2.52
75 76 9.899226 AAGATTTTCTAACTTTTTCCTGAATCG 57.101 29.630 0.00 0.00 0.00 3.34
76 77 8.515414 AGATTTTCTAACTTTTTCCTGAATCGG 58.485 33.333 0.00 0.00 0.00 4.18
77 78 7.811117 TTTTCTAACTTTTTCCTGAATCGGA 57.189 32.000 0.00 0.00 0.00 4.55
78 79 7.996098 TTTCTAACTTTTTCCTGAATCGGAT 57.004 32.000 0.00 0.00 32.02 4.18
79 80 7.611213 TTCTAACTTTTTCCTGAATCGGATC 57.389 36.000 0.00 0.00 32.02 3.36
80 81 6.947464 TCTAACTTTTTCCTGAATCGGATCT 58.053 36.000 0.00 0.00 32.02 2.75
81 82 8.074613 TCTAACTTTTTCCTGAATCGGATCTA 57.925 34.615 0.00 0.00 32.02 1.98
82 83 8.705594 TCTAACTTTTTCCTGAATCGGATCTAT 58.294 33.333 0.00 0.00 32.02 1.98
83 84 9.982651 CTAACTTTTTCCTGAATCGGATCTATA 57.017 33.333 0.00 0.00 32.02 1.31
84 85 8.894768 AACTTTTTCCTGAATCGGATCTATAG 57.105 34.615 0.00 0.00 32.02 1.31
85 86 8.251383 ACTTTTTCCTGAATCGGATCTATAGA 57.749 34.615 4.57 4.57 32.02 1.98
86 87 8.364142 ACTTTTTCCTGAATCGGATCTATAGAG 58.636 37.037 8.70 0.00 32.02 2.43
87 88 8.478775 TTTTTCCTGAATCGGATCTATAGAGA 57.521 34.615 8.70 0.64 35.71 3.10
88 89 7.455641 TTTCCTGAATCGGATCTATAGAGAC 57.544 40.000 8.70 5.05 33.41 3.36
89 90 6.128138 TCCTGAATCGGATCTATAGAGACA 57.872 41.667 8.70 0.67 33.41 3.41
90 91 5.941058 TCCTGAATCGGATCTATAGAGACAC 59.059 44.000 8.70 0.32 33.41 3.67
91 92 5.707764 CCTGAATCGGATCTATAGAGACACA 59.292 44.000 8.70 4.14 33.41 3.72
92 93 6.376864 CCTGAATCGGATCTATAGAGACACAT 59.623 42.308 8.70 0.00 33.41 3.21
93 94 7.093988 CCTGAATCGGATCTATAGAGACACATT 60.094 40.741 8.70 6.78 33.41 2.71
94 95 8.183104 TGAATCGGATCTATAGAGACACATTT 57.817 34.615 8.70 0.00 33.41 2.32
95 96 8.642432 TGAATCGGATCTATAGAGACACATTTT 58.358 33.333 8.70 0.00 33.41 1.82
96 97 9.482627 GAATCGGATCTATAGAGACACATTTTT 57.517 33.333 8.70 0.00 33.41 1.94
97 98 8.824159 ATCGGATCTATAGAGACACATTTTTG 57.176 34.615 8.70 0.00 33.41 2.44
98 99 7.782049 TCGGATCTATAGAGACACATTTTTGT 58.218 34.615 8.70 0.00 33.41 2.83
99 100 7.706607 TCGGATCTATAGAGACACATTTTTGTG 59.293 37.037 8.70 4.64 44.74 3.33
109 110 4.753516 CACATTTTTGTGTGTTCGTTCC 57.246 40.909 0.00 0.00 43.43 3.62
110 111 3.549873 CACATTTTTGTGTGTTCGTTCCC 59.450 43.478 0.00 0.00 43.43 3.97
111 112 3.445805 ACATTTTTGTGTGTTCGTTCCCT 59.554 39.130 0.00 0.00 0.00 4.20
112 113 3.768468 TTTTTGTGTGTTCGTTCCCTC 57.232 42.857 0.00 0.00 0.00 4.30
113 114 1.292061 TTTGTGTGTTCGTTCCCTCG 58.708 50.000 0.00 0.00 0.00 4.63
114 115 0.176219 TTGTGTGTTCGTTCCCTCGT 59.824 50.000 0.00 0.00 0.00 4.18
115 116 0.176219 TGTGTGTTCGTTCCCTCGTT 59.824 50.000 0.00 0.00 0.00 3.85
116 117 1.292992 GTGTGTTCGTTCCCTCGTTT 58.707 50.000 0.00 0.00 0.00 3.60
117 118 1.259770 GTGTGTTCGTTCCCTCGTTTC 59.740 52.381 0.00 0.00 0.00 2.78
118 119 1.134759 TGTGTTCGTTCCCTCGTTTCA 60.135 47.619 0.00 0.00 0.00 2.69
119 120 2.140717 GTGTTCGTTCCCTCGTTTCAT 58.859 47.619 0.00 0.00 0.00 2.57
120 121 2.546789 GTGTTCGTTCCCTCGTTTCATT 59.453 45.455 0.00 0.00 0.00 2.57
121 122 3.002965 GTGTTCGTTCCCTCGTTTCATTT 59.997 43.478 0.00 0.00 0.00 2.32
122 123 3.249080 TGTTCGTTCCCTCGTTTCATTTC 59.751 43.478 0.00 0.00 0.00 2.17
123 124 3.396260 TCGTTCCCTCGTTTCATTTCT 57.604 42.857 0.00 0.00 0.00 2.52
124 125 3.064207 TCGTTCCCTCGTTTCATTTCTG 58.936 45.455 0.00 0.00 0.00 3.02
125 126 2.806244 CGTTCCCTCGTTTCATTTCTGT 59.194 45.455 0.00 0.00 0.00 3.41
126 127 3.991773 CGTTCCCTCGTTTCATTTCTGTA 59.008 43.478 0.00 0.00 0.00 2.74
127 128 4.630069 CGTTCCCTCGTTTCATTTCTGTAT 59.370 41.667 0.00 0.00 0.00 2.29
128 129 5.445939 CGTTCCCTCGTTTCATTTCTGTATG 60.446 44.000 0.00 0.00 0.00 2.39
129 130 5.160607 TCCCTCGTTTCATTTCTGTATGT 57.839 39.130 0.00 0.00 0.00 2.29
130 131 6.288941 TCCCTCGTTTCATTTCTGTATGTA 57.711 37.500 0.00 0.00 0.00 2.29
131 132 6.338146 TCCCTCGTTTCATTTCTGTATGTAG 58.662 40.000 0.00 0.00 0.00 2.74
132 133 6.070995 TCCCTCGTTTCATTTCTGTATGTAGT 60.071 38.462 0.00 0.00 0.00 2.73
133 134 6.255887 CCCTCGTTTCATTTCTGTATGTAGTC 59.744 42.308 0.00 0.00 0.00 2.59
134 135 6.255887 CCTCGTTTCATTTCTGTATGTAGTCC 59.744 42.308 0.00 0.00 0.00 3.85
135 136 6.693466 TCGTTTCATTTCTGTATGTAGTCCA 58.307 36.000 0.00 0.00 0.00 4.02
136 137 7.327975 TCGTTTCATTTCTGTATGTAGTCCAT 58.672 34.615 0.00 0.00 37.58 3.41
137 138 7.822334 TCGTTTCATTTCTGTATGTAGTCCATT 59.178 33.333 0.00 0.00 34.86 3.16
138 139 8.450964 CGTTTCATTTCTGTATGTAGTCCATTT 58.549 33.333 0.00 0.00 34.86 2.32
141 142 9.513906 TTCATTTCTGTATGTAGTCCATTTTGA 57.486 29.630 0.00 0.00 34.86 2.69
142 143 9.513906 TCATTTCTGTATGTAGTCCATTTTGAA 57.486 29.630 0.00 0.00 34.86 2.69
165 166 9.249457 TGAAATATCTTCTAGTATTTGTGAGCG 57.751 33.333 1.87 0.00 32.31 5.03
166 167 8.594881 AAATATCTTCTAGTATTTGTGAGCGG 57.405 34.615 0.00 0.00 31.29 5.52
167 168 5.854010 ATCTTCTAGTATTTGTGAGCGGA 57.146 39.130 0.00 0.00 0.00 5.54
168 169 5.250235 TCTTCTAGTATTTGTGAGCGGAG 57.750 43.478 0.00 0.00 0.00 4.63
169 170 4.098044 TCTTCTAGTATTTGTGAGCGGAGG 59.902 45.833 0.00 0.00 0.00 4.30
170 171 2.693591 TCTAGTATTTGTGAGCGGAGGG 59.306 50.000 0.00 0.00 0.00 4.30
171 172 1.568504 AGTATTTGTGAGCGGAGGGA 58.431 50.000 0.00 0.00 0.00 4.20
172 173 1.482593 AGTATTTGTGAGCGGAGGGAG 59.517 52.381 0.00 0.00 0.00 4.30
173 174 1.207329 GTATTTGTGAGCGGAGGGAGT 59.793 52.381 0.00 0.00 0.00 3.85
174 175 1.568504 ATTTGTGAGCGGAGGGAGTA 58.431 50.000 0.00 0.00 0.00 2.59
175 176 0.895530 TTTGTGAGCGGAGGGAGTAG 59.104 55.000 0.00 0.00 0.00 2.57
176 177 0.251653 TTGTGAGCGGAGGGAGTAGT 60.252 55.000 0.00 0.00 0.00 2.73
177 178 0.622136 TGTGAGCGGAGGGAGTAGTA 59.378 55.000 0.00 0.00 0.00 1.82
178 179 1.005097 TGTGAGCGGAGGGAGTAGTAA 59.995 52.381 0.00 0.00 0.00 2.24
179 180 1.404748 GTGAGCGGAGGGAGTAGTAAC 59.595 57.143 0.00 0.00 0.00 2.50
180 181 1.284198 TGAGCGGAGGGAGTAGTAACT 59.716 52.381 0.00 0.00 39.21 2.24
181 182 2.507058 TGAGCGGAGGGAGTAGTAACTA 59.493 50.000 0.00 0.00 35.56 2.24
182 183 2.877786 GAGCGGAGGGAGTAGTAACTAC 59.122 54.545 0.00 0.00 35.56 2.73
220 221 7.982761 TTTTTCCTTCATGATTTCAAATGGG 57.017 32.000 0.00 0.00 0.00 4.00
221 222 6.931790 TTTCCTTCATGATTTCAAATGGGA 57.068 33.333 0.00 0.00 0.00 4.37
222 223 6.931790 TTCCTTCATGATTTCAAATGGGAA 57.068 33.333 0.00 0.00 0.00 3.97
223 224 6.534475 TCCTTCATGATTTCAAATGGGAAG 57.466 37.500 0.00 0.00 0.00 3.46
224 225 6.018469 TCCTTCATGATTTCAAATGGGAAGT 58.982 36.000 0.00 0.00 31.09 3.01
225 226 6.497954 TCCTTCATGATTTCAAATGGGAAGTT 59.502 34.615 0.00 0.00 31.09 2.66
226 227 6.592607 CCTTCATGATTTCAAATGGGAAGTTG 59.407 38.462 0.00 0.00 31.09 3.16
227 228 5.481105 TCATGATTTCAAATGGGAAGTTGC 58.519 37.500 0.00 0.00 0.00 4.17
228 229 4.270245 TGATTTCAAATGGGAAGTTGCC 57.730 40.909 6.44 6.44 0.00 4.52
229 230 3.903090 TGATTTCAAATGGGAAGTTGCCT 59.097 39.130 15.13 0.00 0.00 4.75
230 231 5.083122 TGATTTCAAATGGGAAGTTGCCTA 58.917 37.500 15.13 1.57 0.00 3.93
231 232 5.721000 TGATTTCAAATGGGAAGTTGCCTAT 59.279 36.000 15.13 3.94 0.00 2.57
232 233 5.404466 TTTCAAATGGGAAGTTGCCTATG 57.596 39.130 15.13 10.49 0.00 2.23
241 242 2.215942 AGTTGCCTATGGGGTGAAAC 57.784 50.000 0.00 0.00 37.43 2.78
242 243 0.808755 GTTGCCTATGGGGTGAAACG 59.191 55.000 0.00 0.00 38.12 3.60
254 255 3.195661 GGGTGAAACGATCTTTAGCGAT 58.804 45.455 0.00 0.00 38.08 4.58
267 268 5.675970 TCTTTAGCGATTTGACTTTTGACG 58.324 37.500 0.00 0.00 0.00 4.35
270 271 2.032030 AGCGATTTGACTTTTGACGTGG 60.032 45.455 0.00 0.00 0.00 4.94
271 272 2.286772 GCGATTTGACTTTTGACGTGGT 60.287 45.455 0.00 0.00 0.00 4.16
272 273 3.288242 CGATTTGACTTTTGACGTGGTG 58.712 45.455 0.00 0.00 0.00 4.17
273 274 3.242608 CGATTTGACTTTTGACGTGGTGT 60.243 43.478 0.00 0.00 0.00 4.16
274 275 4.025563 CGATTTGACTTTTGACGTGGTGTA 60.026 41.667 0.00 0.00 0.00 2.90
309 310 8.438676 AATATTCCTGTAGAACATTGCAGTAC 57.561 34.615 0.00 0.00 37.29 2.73
310 311 4.202245 TCCTGTAGAACATTGCAGTACC 57.798 45.455 0.00 0.00 0.00 3.34
352 355 4.081030 CCGCAACGCAGTGAGCTG 62.081 66.667 0.00 0.00 45.00 4.24
353 356 3.037833 CGCAACGCAGTGAGCTGA 61.038 61.111 1.08 0.00 45.00 4.26
354 357 2.597713 CGCAACGCAGTGAGCTGAA 61.598 57.895 1.08 0.00 45.00 3.02
355 358 1.871772 GCAACGCAGTGAGCTGAAT 59.128 52.632 1.08 0.00 45.00 2.57
356 359 1.078709 GCAACGCAGTGAGCTGAATA 58.921 50.000 1.08 0.00 45.00 1.75
357 360 1.061711 GCAACGCAGTGAGCTGAATAG 59.938 52.381 1.08 0.00 45.00 1.73
358 361 1.061711 CAACGCAGTGAGCTGAATAGC 59.938 52.381 0.00 0.00 45.00 2.97
376 379 0.829333 GCTGATGAGAAGGCAGAGGA 59.171 55.000 0.00 0.00 0.00 3.71
389 392 0.460987 CAGAGGAAGCTAACCTGCGG 60.461 60.000 15.70 6.24 37.93 5.69
419 422 2.050442 CCGAGCCGTTGGTTTTGC 60.050 61.111 0.00 0.00 0.00 3.68
420 423 2.551912 CCGAGCCGTTGGTTTTGCT 61.552 57.895 0.00 0.00 36.62 3.91
553 556 1.675641 CTTGGGCCGGTTCTTGAGG 60.676 63.158 1.90 0.00 0.00 3.86
582 585 2.990479 GTCAACCGCCTCCTCCAT 59.010 61.111 0.00 0.00 0.00 3.41
606 609 2.278013 GTCGTCGTCCTCATCCGC 60.278 66.667 0.00 0.00 0.00 5.54
607 610 3.515286 TCGTCGTCCTCATCCGCC 61.515 66.667 0.00 0.00 0.00 6.13
608 611 3.518998 CGTCGTCCTCATCCGCCT 61.519 66.667 0.00 0.00 0.00 5.52
833 840 3.818121 TTGTGTTCAGGCCGGACCG 62.818 63.158 1.76 6.99 46.52 4.79
897 904 2.623889 CCGTCCGATCCTTATCTCAACT 59.376 50.000 0.00 0.00 0.00 3.16
1040 1047 0.671781 CCTTGCCCACACTTCTCTCG 60.672 60.000 0.00 0.00 0.00 4.04
1041 1048 0.671781 CTTGCCCACACTTCTCTCGG 60.672 60.000 0.00 0.00 0.00 4.63
1042 1049 2.111999 TTGCCCACACTTCTCTCGGG 62.112 60.000 0.00 0.00 40.11 5.14
1043 1050 2.266055 CCCACACTTCTCTCGGGC 59.734 66.667 0.00 0.00 0.00 6.13
1044 1051 2.125912 CCACACTTCTCTCGGGCG 60.126 66.667 0.00 0.00 0.00 6.13
1045 1052 2.651361 CACACTTCTCTCGGGCGT 59.349 61.111 0.00 0.00 0.00 5.68
1046 1053 1.444553 CACACTTCTCTCGGGCGTC 60.445 63.158 0.00 0.00 0.00 5.19
1047 1054 1.604023 ACACTTCTCTCGGGCGTCT 60.604 57.895 0.00 0.00 0.00 4.18
1048 1055 1.137825 CACTTCTCTCGGGCGTCTC 59.862 63.158 0.00 0.00 0.00 3.36
1213 1220 3.399181 GGGGCGTGGATGAGGACA 61.399 66.667 0.00 0.00 0.00 4.02
1218 1225 0.460987 GCGTGGATGAGGACAAGGAG 60.461 60.000 0.00 0.00 0.00 3.69
1226 1233 4.452733 GGACAAGGAGGACGCGGG 62.453 72.222 12.47 0.00 0.00 6.13
1352 1359 1.536073 CGCACCCTTCTCTCACTCCA 61.536 60.000 0.00 0.00 0.00 3.86
1353 1360 0.687354 GCACCCTTCTCTCACTCCAA 59.313 55.000 0.00 0.00 0.00 3.53
1536 1552 2.162681 GGAAAACCATGGTGAGTCTGG 58.837 52.381 20.60 0.00 36.09 3.86
1554 1570 2.624838 CTGGTCAAATGCTTCACTTGGT 59.375 45.455 0.00 0.00 0.00 3.67
1638 1664 5.588246 TGTTTTACTGCTCTTCACATTGTCA 59.412 36.000 0.00 0.00 0.00 3.58
1775 1803 9.227777 ACTCACATATTTACCTTGAAACTAACC 57.772 33.333 0.00 0.00 0.00 2.85
1806 1835 3.248266 GCTGCAATTGAGTGTTGAATCC 58.752 45.455 10.34 0.00 0.00 3.01
1824 1853 0.740737 CCGGGGCTTCAACATCATTC 59.259 55.000 0.00 0.00 0.00 2.67
1825 1854 1.462616 CGGGGCTTCAACATCATTCA 58.537 50.000 0.00 0.00 0.00 2.57
1826 1855 2.026641 CGGGGCTTCAACATCATTCAT 58.973 47.619 0.00 0.00 0.00 2.57
1827 1856 2.428171 CGGGGCTTCAACATCATTCATT 59.572 45.455 0.00 0.00 0.00 2.57
1834 1863 7.259882 GGCTTCAACATCATTCATTGTCATTA 58.740 34.615 0.00 0.00 0.00 1.90
1943 1982 7.645842 TCTATAAGTAGAGATGGCAAGCTGCA 61.646 42.308 1.02 0.00 37.27 4.41
1965 2008 6.146898 GCAACAGTAACGGTTAACATTCATT 58.853 36.000 8.10 0.00 0.00 2.57
2056 2100 5.184096 CCTTTTTCTTTCCCTTAGCTTCTCC 59.816 44.000 0.00 0.00 0.00 3.71
2070 2114 8.304596 CCTTAGCTTCTCCGTATATATTGTTCA 58.695 37.037 0.00 0.00 0.00 3.18
2139 2184 5.103000 CCTTCGTTCATTCGTTATGACTCT 58.897 41.667 3.10 0.00 42.88 3.24
2145 2191 4.744570 TCATTCGTTATGACTCTGGACAC 58.255 43.478 0.00 0.00 38.35 3.67
2148 2194 5.970317 TTCGTTATGACTCTGGACACTTA 57.030 39.130 0.00 0.00 0.00 2.24
2267 2326 6.238842 GCTTTCACTGTTGGCATATATGTCAT 60.239 38.462 20.22 3.11 42.67 3.06
2297 2356 7.278135 AGTTAATGATAGCTTTGCATCAGAGA 58.722 34.615 0.00 0.00 32.83 3.10
2341 2400 6.743172 GCTTCCACTCGATTTTTATTGACTTC 59.257 38.462 0.00 0.00 0.00 3.01
2487 2547 7.683437 ATTGCTGATGACATATGGATTACAG 57.317 36.000 7.80 10.36 0.00 2.74
2489 2549 6.461640 TGCTGATGACATATGGATTACAGAG 58.538 40.000 7.80 2.09 0.00 3.35
2490 2550 6.042437 TGCTGATGACATATGGATTACAGAGT 59.958 38.462 7.80 0.00 0.00 3.24
2537 2600 6.485313 TCGACAACATTACCTTGTGAAAGATT 59.515 34.615 0.00 0.00 31.83 2.40
2686 2842 9.483489 TCTTGTACACCTGTTAGATATCCTTTA 57.517 33.333 0.00 0.00 0.00 1.85
2719 2878 4.824537 TCTTTGCTTGCACAATAGGTTACA 59.175 37.500 0.00 0.00 0.00 2.41
2772 2931 8.686334 ACCAAGCAAATTATAACCAGTATCAAG 58.314 33.333 0.00 0.00 0.00 3.02
2832 3000 3.453717 TGCAGTTGATATCTCTTCTGGCT 59.546 43.478 3.98 0.00 0.00 4.75
2880 3048 9.827411 GTTTCTTCTTAACTTTACATGATGTCC 57.173 33.333 0.00 0.00 0.00 4.02
2902 3164 3.318557 CGTGAGGAGAATAGGGGTAGTTC 59.681 52.174 0.00 0.00 0.00 3.01
2907 3169 6.104243 TGAGGAGAATAGGGGTAGTTCATAGA 59.896 42.308 0.00 0.00 0.00 1.98
3016 3278 2.047830 GAAATACTCCCTCCGTCCCAT 58.952 52.381 0.00 0.00 0.00 4.00
3020 3282 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3021 3283 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3023 3285 1.128200 CCCTCCGTCCCATAATGTGA 58.872 55.000 0.00 0.00 0.00 3.58
3026 3288 2.224066 CCTCCGTCCCATAATGTGAGAC 60.224 54.545 0.00 0.00 0.00 3.36
3027 3289 1.407618 TCCGTCCCATAATGTGAGACG 59.592 52.381 7.04 7.04 0.00 4.18
3028 3290 1.136305 CCGTCCCATAATGTGAGACGT 59.864 52.381 12.24 0.00 33.43 4.34
3029 3291 2.418197 CCGTCCCATAATGTGAGACGTT 60.418 50.000 12.24 0.00 33.43 3.99
3030 3292 3.259064 CGTCCCATAATGTGAGACGTTT 58.741 45.455 5.94 0.00 0.00 3.60
3031 3293 3.682858 CGTCCCATAATGTGAGACGTTTT 59.317 43.478 5.94 0.00 0.00 2.43
3033 3295 5.390613 GTCCCATAATGTGAGACGTTTTTG 58.609 41.667 0.00 0.00 0.00 2.44
3034 3296 4.083003 TCCCATAATGTGAGACGTTTTTGC 60.083 41.667 0.00 0.00 0.00 3.68
3036 3298 5.218885 CCATAATGTGAGACGTTTTTGCAA 58.781 37.500 0.00 0.00 0.00 4.08
3037 3299 5.343058 CCATAATGTGAGACGTTTTTGCAAG 59.657 40.000 0.00 0.00 0.00 4.01
3038 3300 2.187351 TGTGAGACGTTTTTGCAAGC 57.813 45.000 0.00 0.00 0.00 4.01
3039 3301 1.742831 TGTGAGACGTTTTTGCAAGCT 59.257 42.857 0.00 0.00 0.00 3.74
3040 3302 2.939756 TGTGAGACGTTTTTGCAAGCTA 59.060 40.909 0.00 0.00 0.00 3.32
3041 3303 3.002246 TGTGAGACGTTTTTGCAAGCTAG 59.998 43.478 0.00 0.00 0.00 3.42
3042 3304 2.032030 TGAGACGTTTTTGCAAGCTAGC 60.032 45.455 6.62 6.62 0.00 3.42
3043 3305 2.222027 AGACGTTTTTGCAAGCTAGCT 58.778 42.857 12.68 12.68 34.99 3.32
3044 3306 2.618709 AGACGTTTTTGCAAGCTAGCTT 59.381 40.909 24.42 24.42 36.60 3.74
3055 3317 4.898328 CAAGCTAGCTTGCAAAAATGTC 57.102 40.909 37.13 0.00 45.38 3.06
3056 3318 4.553323 CAAGCTAGCTTGCAAAAATGTCT 58.447 39.130 37.13 7.69 45.38 3.41
3057 3319 4.431661 AGCTAGCTTGCAAAAATGTCTC 57.568 40.909 22.05 0.00 34.99 3.36
3058 3320 3.822735 AGCTAGCTTGCAAAAATGTCTCA 59.177 39.130 22.05 0.00 34.99 3.27
3059 3321 3.916776 GCTAGCTTGCAAAAATGTCTCAC 59.083 43.478 15.53 0.00 0.00 3.51
3060 3322 4.557296 GCTAGCTTGCAAAAATGTCTCACA 60.557 41.667 15.53 0.00 0.00 3.58
3061 3323 4.595762 AGCTTGCAAAAATGTCTCACAT 57.404 36.364 0.00 0.00 41.31 3.21
3062 3324 9.347245 AGCTAGCTTGCAAAAATGTCTCACATT 62.347 37.037 22.05 0.00 41.88 2.71
3157 3420 2.372504 TCATGTAACAACCCCTTTCCGA 59.627 45.455 0.00 0.00 0.00 4.55
3187 3450 2.757868 CCGATGTGAGGTCTCTCTCTTT 59.242 50.000 0.00 0.00 40.58 2.52
3226 3489 4.759183 GGAAGAAGCAGAATGAGAACAAGT 59.241 41.667 0.00 0.00 39.69 3.16
3230 3493 1.815003 GCAGAATGAGAACAAGTGGGG 59.185 52.381 0.00 0.00 39.69 4.96
3234 3497 2.867109 ATGAGAACAAGTGGGGAGTG 57.133 50.000 0.00 0.00 0.00 3.51
3290 3553 6.586463 TCAGACTTAGTCGTTTCTGCATAAAG 59.414 38.462 6.73 0.00 37.67 1.85
3332 3595 1.501741 CCAACACATGCTACACCGC 59.498 57.895 0.00 0.00 0.00 5.68
3361 3625 2.029020 GCCCCCACTTTTCAAAGCTTAG 60.029 50.000 0.00 0.00 39.63 2.18
3364 3628 3.259123 CCCCACTTTTCAAAGCTTAGCAT 59.741 43.478 7.07 0.00 39.63 3.79
3368 3632 4.022068 CACTTTTCAAAGCTTAGCATCCCA 60.022 41.667 7.07 0.00 39.63 4.37
3373 3637 1.214305 AAGCTTAGCATCCCACCCCA 61.214 55.000 7.07 0.00 0.00 4.96
3374 3638 1.453928 GCTTAGCATCCCACCCCAC 60.454 63.158 0.00 0.00 0.00 4.61
3375 3639 1.227383 CTTAGCATCCCACCCCACC 59.773 63.158 0.00 0.00 0.00 4.61
3376 3640 2.284515 CTTAGCATCCCACCCCACCC 62.285 65.000 0.00 0.00 0.00 4.61
3377 3641 3.587925 TAGCATCCCACCCCACCCA 62.588 63.158 0.00 0.00 0.00 4.51
3378 3642 4.759205 GCATCCCACCCCACCCAC 62.759 72.222 0.00 0.00 0.00 4.61
3379 3643 3.264052 CATCCCACCCCACCCACA 61.264 66.667 0.00 0.00 0.00 4.17
3380 3644 3.264845 ATCCCACCCCACCCACAC 61.265 66.667 0.00 0.00 0.00 3.82
3390 3654 3.542602 ACCCACACCCCCTCCTCT 61.543 66.667 0.00 0.00 0.00 3.69
3393 3657 1.307343 CCACACCCCCTCCTCTCAT 60.307 63.158 0.00 0.00 0.00 2.90
3416 3680 1.054406 ACCCGGTACATAGCTGGCAT 61.054 55.000 0.00 0.00 32.24 4.40
3431 3695 3.195002 CATACCGGTGGCACGCTG 61.195 66.667 19.93 4.85 46.28 5.18
3443 3959 1.448540 CACGCTGCCCTGTCTAAGG 60.449 63.158 0.00 0.00 46.94 2.69
3449 3965 2.264794 CCCTGTCTAAGGCGCGTT 59.735 61.111 20.19 20.19 45.89 4.84
3451 3967 2.740714 CCTGTCTAAGGCGCGTTGC 61.741 63.158 24.54 14.53 39.93 4.17
3491 4007 1.470098 CCAGCTGACATTTGTGCTACC 59.530 52.381 17.39 0.00 34.10 3.18
3507 4023 6.412214 TGTGCTACCCTTATTTTTAGTCCTC 58.588 40.000 0.00 0.00 0.00 3.71
3526 4042 6.266103 AGTCCTCAAATTGAATTTCAGCTGAA 59.734 34.615 25.16 25.16 0.00 3.02
3527 4043 6.364435 GTCCTCAAATTGAATTTCAGCTGAAC 59.636 38.462 28.46 17.48 33.13 3.18
3581 4098 6.293004 TGTGGATATGTGTTAGTGTCATCA 57.707 37.500 0.00 0.00 0.00 3.07
3645 4172 8.632906 ATTCAGTGATTCTTCAGTTGAGAAAT 57.367 30.769 0.00 0.00 33.07 2.17
3716 4440 4.404715 AGTGTACATGCCTCCTTAACGTAT 59.595 41.667 0.00 0.00 0.00 3.06
3792 4516 6.657541 TGTAATCTTTGGGACACTGGTAATTC 59.342 38.462 0.00 0.00 39.29 2.17
3793 4517 3.670625 TCTTTGGGACACTGGTAATTCG 58.329 45.455 0.00 0.00 39.29 3.34
3794 4518 2.483014 TTGGGACACTGGTAATTCGG 57.517 50.000 0.00 0.00 39.29 4.30
3795 4519 1.354101 TGGGACACTGGTAATTCGGT 58.646 50.000 0.00 0.00 0.00 4.69
3796 4520 1.002659 TGGGACACTGGTAATTCGGTG 59.997 52.381 4.90 4.90 46.43 4.94
3797 4521 1.276989 GGGACACTGGTAATTCGGTGA 59.723 52.381 11.89 0.00 44.48 4.02
3798 4522 2.093128 GGGACACTGGTAATTCGGTGAT 60.093 50.000 11.89 0.00 44.48 3.06
3799 4523 3.606687 GGACACTGGTAATTCGGTGATT 58.393 45.455 11.89 0.00 44.48 2.57
3808 4532 7.884354 ACTGGTAATTCGGTGATTTTTAACCTA 59.116 33.333 0.00 0.00 34.06 3.08
3815 4539 7.148355 TCGGTGATTTTTAACCTACCAAATC 57.852 36.000 0.00 0.00 36.54 2.17
3817 4541 7.230913 TCGGTGATTTTTAACCTACCAAATCAA 59.769 33.333 10.72 0.00 43.70 2.57
3861 4585 6.659824 TCAGAAAGTAACTTCCCTGTCTTTT 58.340 36.000 0.00 0.00 31.14 2.27
3973 4697 3.402681 CCTCCACGATGGCTGGGT 61.403 66.667 0.00 0.00 37.47 4.51
4025 4749 4.096382 GCCACCATACTCATTTGTAGTTGG 59.904 45.833 0.00 0.00 34.27 3.77
4031 4755 7.037873 ACCATACTCATTTGTAGTTGGAGGTTA 60.038 37.037 0.00 0.00 33.28 2.85
4059 4783 3.708890 TGACTGAACTTGCAGCATTTTG 58.291 40.909 0.00 0.00 39.51 2.44
4081 4810 2.427095 GTGTTACAAATGCTCCCCCATC 59.573 50.000 0.00 0.00 0.00 3.51
4085 4814 0.324552 CAAATGCTCCCCCATCACCA 60.325 55.000 0.00 0.00 0.00 4.17
4126 4855 6.282930 GCAATTGTGGCCTTTGTAATATGAT 58.717 36.000 3.32 0.00 0.00 2.45
4155 4884 2.401766 CGGCTTCCTGGTGCATGAC 61.402 63.158 14.10 0.00 0.00 3.06
4160 4889 0.764271 TTCCTGGTGCATGACTGTGA 59.236 50.000 0.00 0.00 0.00 3.58
4167 4896 2.094545 GGTGCATGACTGTGATTTTCCC 60.095 50.000 0.00 0.00 0.00 3.97
4188 4917 3.674753 CCGACAAGATTTTTGGTGATTGC 59.325 43.478 0.00 0.00 0.00 3.56
4194 4923 4.414852 AGATTTTTGGTGATTGCGATTCG 58.585 39.130 0.62 0.62 0.00 3.34
4204 4933 2.535934 TTGCGATTCGTTATTGGTGC 57.464 45.000 8.03 0.00 0.00 5.01
4227 4956 5.377358 CAATTGACTGATCGACAAGTGTTC 58.623 41.667 0.00 0.00 38.12 3.18
4229 4958 5.447624 TTGACTGATCGACAAGTGTTCTA 57.552 39.130 6.56 0.00 0.00 2.10
4230 4959 5.447624 TGACTGATCGACAAGTGTTCTAA 57.552 39.130 6.56 0.00 0.00 2.10
4231 4960 5.838529 TGACTGATCGACAAGTGTTCTAAA 58.161 37.500 6.56 0.00 0.00 1.85
4232 4961 5.690409 TGACTGATCGACAAGTGTTCTAAAC 59.310 40.000 6.56 0.00 0.00 2.01
4233 4962 5.844004 ACTGATCGACAAGTGTTCTAAACT 58.156 37.500 1.17 0.00 0.00 2.66
4234 4963 6.281405 ACTGATCGACAAGTGTTCTAAACTT 58.719 36.000 1.17 0.00 38.40 2.66
4259 4988 4.141711 TGAGACTTGGTATATTGTCCCAGC 60.142 45.833 0.00 0.00 0.00 4.85
4263 4992 2.487775 TGGTATATTGTCCCAGCCACT 58.512 47.619 0.00 0.00 0.00 4.00
4264 4993 2.849943 TGGTATATTGTCCCAGCCACTT 59.150 45.455 0.00 0.00 0.00 3.16
4268 4997 2.683211 ATTGTCCCAGCCACTTCTTT 57.317 45.000 0.00 0.00 0.00 2.52
4269 4998 1.981256 TTGTCCCAGCCACTTCTTTC 58.019 50.000 0.00 0.00 0.00 2.62
4275 5004 4.583073 GTCCCAGCCACTTCTTTCTTTTTA 59.417 41.667 0.00 0.00 0.00 1.52
4277 5006 5.301805 TCCCAGCCACTTCTTTCTTTTTAAG 59.698 40.000 0.00 0.00 0.00 1.85
4278 5007 5.301805 CCCAGCCACTTCTTTCTTTTTAAGA 59.698 40.000 0.00 0.00 35.26 2.10
4279 5008 6.183360 CCCAGCCACTTCTTTCTTTTTAAGAA 60.183 38.462 0.00 0.00 45.30 2.52
4315 5048 4.365514 TGCATTCTCTTAACCTTGTCCA 57.634 40.909 0.00 0.00 0.00 4.02
4369 5104 4.521146 ACTCCCTGCATCTCAAAATGTAG 58.479 43.478 0.00 0.00 38.61 2.74
4400 5135 8.791327 ATTCATTTTGTCCAAACTCAAACTTT 57.209 26.923 0.00 0.00 34.05 2.66
4403 5138 7.759433 TCATTTTGTCCAAACTCAAACTTTCTC 59.241 33.333 0.00 0.00 34.05 2.87
4432 5167 5.271598 TGATTTCTGGCATTCCATTAACCT 58.728 37.500 0.00 0.00 42.51 3.50
4436 5171 5.659440 TCTGGCATTCCATTAACCTTTTC 57.341 39.130 0.00 0.00 42.51 2.29
4445 5180 8.585018 CATTCCATTAACCTTTTCCTGTTAACT 58.415 33.333 7.22 0.00 39.11 2.24
4446 5181 7.519032 TCCATTAACCTTTTCCTGTTAACTG 57.481 36.000 7.22 6.33 39.11 3.16
4448 5183 7.013846 TCCATTAACCTTTTCCTGTTAACTGTG 59.986 37.037 7.22 1.45 39.11 3.66
4449 5184 7.201875 CCATTAACCTTTTCCTGTTAACTGTGT 60.202 37.037 7.22 0.00 39.11 3.72
4450 5185 8.842280 CATTAACCTTTTCCTGTTAACTGTGTA 58.158 33.333 7.22 0.00 39.11 2.90
4451 5186 8.804912 TTAACCTTTTCCTGTTAACTGTGTAA 57.195 30.769 7.22 0.00 33.31 2.41
4452 5187 7.891498 AACCTTTTCCTGTTAACTGTGTAAT 57.109 32.000 7.22 0.00 0.00 1.89
4453 5188 7.891498 ACCTTTTCCTGTTAACTGTGTAATT 57.109 32.000 7.22 0.00 0.00 1.40
4454 5189 8.301252 ACCTTTTCCTGTTAACTGTGTAATTT 57.699 30.769 7.22 0.00 0.00 1.82
4455 5190 9.411189 ACCTTTTCCTGTTAACTGTGTAATTTA 57.589 29.630 7.22 0.00 0.00 1.40
4481 5216 5.013568 TGTTCGGGTATTACTACACCATG 57.986 43.478 0.00 0.00 36.48 3.66
4482 5217 4.467082 TGTTCGGGTATTACTACACCATGT 59.533 41.667 0.00 0.00 36.48 3.21
4483 5218 5.046448 TGTTCGGGTATTACTACACCATGTT 60.046 40.000 0.00 0.00 36.48 2.71
4498 5233 7.264373 ACACCATGTTTTTAAGTTCTCTCTG 57.736 36.000 0.00 0.00 0.00 3.35
4512 5247 8.430801 AAGTTCTCTCTGCATACATTAATGTC 57.569 34.615 24.00 11.13 41.97 3.06
4524 5259 7.329471 GCATACATTAATGTCGAATCTAGAGCA 59.671 37.037 24.00 2.97 41.97 4.26
4528 5263 7.928167 ACATTAATGTCGAATCTAGAGCATTGA 59.072 33.333 15.47 2.05 35.87 2.57
4554 5289 4.857871 CACGAACTCTTTGTGAAGACAA 57.142 40.909 0.00 0.00 45.94 3.18
4557 5292 4.214437 CGAACTCTTTGTGAAGACAATGC 58.786 43.478 0.00 0.00 41.77 3.56
4564 5299 3.988379 TGTGAAGACAATGCCTTGTTC 57.012 42.857 8.84 4.47 45.57 3.18
4567 5302 3.817647 GTGAAGACAATGCCTTGTTCTCT 59.182 43.478 8.84 0.00 45.57 3.10
4576 5311 4.431416 TGCCTTGTTCTCTGTCCTTTTA 57.569 40.909 0.00 0.00 0.00 1.52
4588 5323 3.153919 TGTCCTTTTACATGCCTTCCAC 58.846 45.455 0.00 0.00 0.00 4.02
4589 5324 3.153919 GTCCTTTTACATGCCTTCCACA 58.846 45.455 0.00 0.00 0.00 4.17
4591 5326 2.095263 CCTTTTACATGCCTTCCACACG 60.095 50.000 0.00 0.00 0.00 4.49
4621 5441 8.792830 ATAATGCTTAGCGACATGGTTTATAT 57.207 30.769 0.00 0.00 0.00 0.86
4646 5466 0.030638 GTCTTTCTTGCAAGCGCCAA 59.969 50.000 21.99 7.89 37.32 4.52
4654 5474 1.234615 TGCAAGCGCCAAAGAGGTAC 61.235 55.000 2.29 0.00 40.61 3.34
4657 5477 2.047560 GCGCCAAAGAGGTACGGT 60.048 61.111 0.00 0.00 40.61 4.83
4712 5533 1.152860 ACGGCACCAAATGTCCACA 60.153 52.632 0.00 0.00 0.00 4.17
4727 5570 3.958860 ACAGACAGCAGGTGGGGC 61.959 66.667 4.26 0.00 0.00 5.80
4763 5606 3.123804 CGTAGGAATCAAATGTCTCCCG 58.876 50.000 0.00 0.00 0.00 5.14
4764 5607 2.044123 AGGAATCAAATGTCTCCCGC 57.956 50.000 0.00 0.00 0.00 6.13
4765 5608 1.561542 AGGAATCAAATGTCTCCCGCT 59.438 47.619 0.00 0.00 0.00 5.52
4766 5609 1.943340 GGAATCAAATGTCTCCCGCTC 59.057 52.381 0.00 0.00 0.00 5.03
4767 5610 2.632377 GAATCAAATGTCTCCCGCTCA 58.368 47.619 0.00 0.00 0.00 4.26
4768 5611 2.322355 ATCAAATGTCTCCCGCTCAG 57.678 50.000 0.00 0.00 0.00 3.35
4770 5615 1.066858 TCAAATGTCTCCCGCTCAGTC 60.067 52.381 0.00 0.00 0.00 3.51
4775 5620 1.416401 TGTCTCCCGCTCAGTCTTTTT 59.584 47.619 0.00 0.00 0.00 1.94
4792 5637 3.603965 TTTTTCATATGCCCGGGGTAT 57.396 42.857 25.28 20.86 0.00 2.73
4794 5639 2.577606 TTCATATGCCCGGGGTATTG 57.422 50.000 25.28 17.93 0.00 1.90
4803 5648 4.290942 TGCCCGGGGTATTGAAAATAATT 58.709 39.130 25.28 0.00 0.00 1.40
4804 5649 4.100189 TGCCCGGGGTATTGAAAATAATTG 59.900 41.667 25.28 0.00 0.00 2.32
4914 5787 7.922505 TTTGAATTCAACTTATTTGGACACG 57.077 32.000 20.35 0.00 35.28 4.49
4915 5788 6.627395 TGAATTCAACTTATTTGGACACGT 57.373 33.333 5.45 0.00 35.69 4.49
4916 5789 7.731882 TGAATTCAACTTATTTGGACACGTA 57.268 32.000 5.45 0.00 35.69 3.57
4917 5790 8.330466 TGAATTCAACTTATTTGGACACGTAT 57.670 30.769 5.45 0.00 35.69 3.06
4918 5791 8.788806 TGAATTCAACTTATTTGGACACGTATT 58.211 29.630 5.45 0.00 35.69 1.89
4919 5792 9.620660 GAATTCAACTTATTTGGACACGTATTT 57.379 29.630 0.00 0.00 35.69 1.40
4920 5793 9.974980 AATTCAACTTATTTGGACACGTATTTT 57.025 25.926 0.00 0.00 35.69 1.82
4923 5796 9.275398 TCAACTTATTTGGACACGTATTTTAGT 57.725 29.630 0.00 0.00 35.69 2.24
4924 5797 9.887406 CAACTTATTTGGACACGTATTTTAGTT 57.113 29.630 0.00 0.00 0.00 2.24
4925 5798 9.887406 AACTTATTTGGACACGTATTTTAGTTG 57.113 29.630 0.00 0.00 0.00 3.16
4926 5799 9.059260 ACTTATTTGGACACGTATTTTAGTTGT 57.941 29.630 0.00 0.00 0.00 3.32
4927 5800 9.537848 CTTATTTGGACACGTATTTTAGTTGTC 57.462 33.333 0.00 0.00 0.00 3.18
4928 5801 6.922247 TTTGGACACGTATTTTAGTTGTCA 57.078 33.333 0.00 0.00 0.00 3.58
4929 5802 7.499321 TTTGGACACGTATTTTAGTTGTCAT 57.501 32.000 0.00 0.00 0.00 3.06
4930 5803 8.604640 TTTGGACACGTATTTTAGTTGTCATA 57.395 30.769 0.00 0.00 0.00 2.15
4931 5804 8.780846 TTGGACACGTATTTTAGTTGTCATAT 57.219 30.769 0.00 0.00 0.00 1.78
4932 5805 8.192068 TGGACACGTATTTTAGTTGTCATATG 57.808 34.615 0.00 0.00 0.00 1.78
4933 5806 8.035984 TGGACACGTATTTTAGTTGTCATATGA 58.964 33.333 0.00 0.00 0.00 2.15
4934 5807 8.875803 GGACACGTATTTTAGTTGTCATATGAA 58.124 33.333 7.07 0.00 0.00 2.57
4938 5811 9.716507 ACGTATTTTAGTTGTCATATGAAATGC 57.283 29.630 7.07 4.75 0.00 3.56
4939 5812 9.169468 CGTATTTTAGTTGTCATATGAAATGCC 57.831 33.333 7.07 0.00 0.00 4.40
4940 5813 9.463443 GTATTTTAGTTGTCATATGAAATGCCC 57.537 33.333 7.07 0.00 0.00 5.36
4941 5814 7.473735 TTTTAGTTGTCATATGAAATGCCCA 57.526 32.000 7.07 0.00 0.00 5.36
4942 5815 7.658525 TTTAGTTGTCATATGAAATGCCCAT 57.341 32.000 7.07 0.00 0.00 4.00
4943 5816 8.759481 TTTAGTTGTCATATGAAATGCCCATA 57.241 30.769 7.07 0.00 0.00 2.74
4944 5817 8.938801 TTAGTTGTCATATGAAATGCCCATAT 57.061 30.769 7.07 0.00 37.62 1.78
4947 5820 8.963725 AGTTGTCATATGAAATGCCCATATATG 58.036 33.333 7.07 5.68 35.95 1.78
4948 5821 7.337480 TGTCATATGAAATGCCCATATATGC 57.663 36.000 7.07 0.00 35.95 3.14
4949 5822 7.120716 TGTCATATGAAATGCCCATATATGCT 58.879 34.615 7.07 0.00 35.95 3.79
4950 5823 7.283807 TGTCATATGAAATGCCCATATATGCTC 59.716 37.037 7.07 1.81 35.95 4.26
4951 5824 7.283807 GTCATATGAAATGCCCATATATGCTCA 59.716 37.037 7.07 7.30 35.95 4.26
4952 5825 7.835181 TCATATGAAATGCCCATATATGCTCAA 59.165 33.333 1.98 0.00 35.95 3.02
4953 5826 8.638873 CATATGAAATGCCCATATATGCTCAAT 58.361 33.333 7.24 0.00 35.95 2.57
4954 5827 6.921486 TGAAATGCCCATATATGCTCAATT 57.079 33.333 7.24 6.37 0.00 2.32
4955 5828 8.598202 ATGAAATGCCCATATATGCTCAATTA 57.402 30.769 7.24 0.00 0.00 1.40
4956 5829 8.058667 TGAAATGCCCATATATGCTCAATTAG 57.941 34.615 7.24 0.00 0.00 1.73
4957 5830 7.889600 TGAAATGCCCATATATGCTCAATTAGA 59.110 33.333 7.24 0.00 0.00 2.10
4958 5831 8.834004 AAATGCCCATATATGCTCAATTAGAT 57.166 30.769 7.24 0.00 0.00 1.98
4959 5832 8.461249 AATGCCCATATATGCTCAATTAGATC 57.539 34.615 7.24 0.00 0.00 2.75
4960 5833 6.961042 TGCCCATATATGCTCAATTAGATCA 58.039 36.000 7.24 0.00 0.00 2.92
4961 5834 6.825213 TGCCCATATATGCTCAATTAGATCAC 59.175 38.462 7.24 0.00 0.00 3.06
4962 5835 7.052873 GCCCATATATGCTCAATTAGATCACT 58.947 38.462 7.24 0.00 0.00 3.41
4963 5836 7.226325 GCCCATATATGCTCAATTAGATCACTC 59.774 40.741 7.24 0.00 0.00 3.51
4964 5837 8.484575 CCCATATATGCTCAATTAGATCACTCT 58.515 37.037 7.24 0.00 35.39 3.24
4965 5838 9.315525 CCATATATGCTCAATTAGATCACTCTG 57.684 37.037 7.24 0.00 32.66 3.35
4969 5842 6.475596 TGCTCAATTAGATCACTCTGATGA 57.524 37.500 0.00 0.00 37.20 2.92
4970 5843 6.514063 TGCTCAATTAGATCACTCTGATGAG 58.486 40.000 0.00 0.00 45.43 2.90
4971 5844 6.323225 TGCTCAATTAGATCACTCTGATGAGA 59.677 38.462 13.57 0.00 42.73 3.27
4972 5845 6.642131 GCTCAATTAGATCACTCTGATGAGAC 59.358 42.308 13.57 6.02 42.73 3.36
4973 5846 7.470424 GCTCAATTAGATCACTCTGATGAGACT 60.470 40.741 13.57 4.45 42.73 3.24
4974 5847 7.714703 TCAATTAGATCACTCTGATGAGACTG 58.285 38.462 0.00 0.00 42.73 3.51
4975 5848 7.559170 TCAATTAGATCACTCTGATGAGACTGA 59.441 37.037 0.00 0.00 42.73 3.41
4976 5849 6.691754 TTAGATCACTCTGATGAGACTGAC 57.308 41.667 0.00 0.00 42.73 3.51
4977 5850 4.598022 AGATCACTCTGATGAGACTGACA 58.402 43.478 0.00 0.00 42.73 3.58
4978 5851 5.202765 AGATCACTCTGATGAGACTGACAT 58.797 41.667 0.00 0.00 42.73 3.06
4979 5852 4.715527 TCACTCTGATGAGACTGACATG 57.284 45.455 0.00 0.00 42.73 3.21
4980 5853 4.085009 TCACTCTGATGAGACTGACATGT 58.915 43.478 0.00 0.00 42.73 3.21
4981 5854 4.157472 TCACTCTGATGAGACTGACATGTC 59.843 45.833 19.27 19.27 42.73 3.06
4982 5855 4.082354 CACTCTGATGAGACTGACATGTCA 60.082 45.833 26.33 26.33 42.73 3.58
4983 5856 4.525874 ACTCTGATGAGACTGACATGTCAA 59.474 41.667 27.63 14.24 42.73 3.18
4984 5857 5.011431 ACTCTGATGAGACTGACATGTCAAA 59.989 40.000 27.63 12.45 42.73 2.69
4985 5858 5.476614 TCTGATGAGACTGACATGTCAAAG 58.523 41.667 27.63 19.59 39.39 2.77
4986 5859 5.244626 TCTGATGAGACTGACATGTCAAAGA 59.755 40.000 27.63 16.32 39.39 2.52
4987 5860 5.857268 TGATGAGACTGACATGTCAAAGAA 58.143 37.500 27.63 13.75 39.39 2.52
4988 5861 6.470278 TGATGAGACTGACATGTCAAAGAAT 58.530 36.000 27.63 17.36 39.39 2.40
4989 5862 7.614494 TGATGAGACTGACATGTCAAAGAATA 58.386 34.615 27.63 13.81 39.39 1.75
4990 5863 7.763071 TGATGAGACTGACATGTCAAAGAATAG 59.237 37.037 27.63 16.89 39.39 1.73
4991 5864 6.401394 TGAGACTGACATGTCAAAGAATAGG 58.599 40.000 27.63 16.21 39.39 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.013921 ACCTCTGAACGAACTGCAAAAA 58.986 40.909 0.00 0.00 0.00 1.94
23 24 2.639065 ACCTCTGAACGAACTGCAAAA 58.361 42.857 0.00 0.00 0.00 2.44
24 25 2.325583 ACCTCTGAACGAACTGCAAA 57.674 45.000 0.00 0.00 0.00 3.68
25 26 2.364324 ACTACCTCTGAACGAACTGCAA 59.636 45.455 0.00 0.00 0.00 4.08
26 27 1.961394 ACTACCTCTGAACGAACTGCA 59.039 47.619 0.00 0.00 0.00 4.41
27 28 2.726832 ACTACCTCTGAACGAACTGC 57.273 50.000 0.00 0.00 0.00 4.40
28 29 7.317842 TCTTATACTACCTCTGAACGAACTG 57.682 40.000 0.00 0.00 0.00 3.16
29 30 8.522542 AATCTTATACTACCTCTGAACGAACT 57.477 34.615 0.00 0.00 0.00 3.01
30 31 9.583765 AAAATCTTATACTACCTCTGAACGAAC 57.416 33.333 0.00 0.00 0.00 3.95
31 32 9.798994 GAAAATCTTATACTACCTCTGAACGAA 57.201 33.333 0.00 0.00 0.00 3.85
32 33 9.186837 AGAAAATCTTATACTACCTCTGAACGA 57.813 33.333 0.00 0.00 0.00 3.85
49 50 9.899226 CGATTCAGGAAAAAGTTAGAAAATCTT 57.101 29.630 0.00 0.00 0.00 2.40
50 51 8.515414 CCGATTCAGGAAAAAGTTAGAAAATCT 58.485 33.333 0.00 0.00 0.00 2.40
51 52 8.512138 TCCGATTCAGGAAAAAGTTAGAAAATC 58.488 33.333 0.00 0.00 37.36 2.17
52 53 8.404107 TCCGATTCAGGAAAAAGTTAGAAAAT 57.596 30.769 0.00 0.00 37.36 1.82
53 54 7.811117 TCCGATTCAGGAAAAAGTTAGAAAA 57.189 32.000 0.00 0.00 37.36 2.29
54 55 7.883311 AGATCCGATTCAGGAAAAAGTTAGAAA 59.117 33.333 0.00 0.00 44.50 2.52
55 56 7.394816 AGATCCGATTCAGGAAAAAGTTAGAA 58.605 34.615 0.00 0.00 44.50 2.10
56 57 6.947464 AGATCCGATTCAGGAAAAAGTTAGA 58.053 36.000 0.00 0.00 44.50 2.10
57 58 8.894768 ATAGATCCGATTCAGGAAAAAGTTAG 57.105 34.615 0.00 0.00 44.50 2.34
58 59 9.982651 CTATAGATCCGATTCAGGAAAAAGTTA 57.017 33.333 0.00 0.00 44.50 2.24
59 60 8.705594 TCTATAGATCCGATTCAGGAAAAAGTT 58.294 33.333 0.00 0.00 44.50 2.66
60 61 8.251383 TCTATAGATCCGATTCAGGAAAAAGT 57.749 34.615 0.00 0.00 44.50 2.66
61 62 8.580720 TCTCTATAGATCCGATTCAGGAAAAAG 58.419 37.037 2.11 0.00 44.50 2.27
62 63 8.361139 GTCTCTATAGATCCGATTCAGGAAAAA 58.639 37.037 2.11 0.00 44.50 1.94
63 64 7.505923 TGTCTCTATAGATCCGATTCAGGAAAA 59.494 37.037 2.11 0.00 44.50 2.29
64 65 7.004691 TGTCTCTATAGATCCGATTCAGGAAA 58.995 38.462 2.11 0.00 44.50 3.13
65 66 6.431543 GTGTCTCTATAGATCCGATTCAGGAA 59.568 42.308 2.11 0.00 44.50 3.36
66 67 5.941058 GTGTCTCTATAGATCCGATTCAGGA 59.059 44.000 2.11 0.78 45.54 3.86
67 68 5.707764 TGTGTCTCTATAGATCCGATTCAGG 59.292 44.000 2.11 0.00 33.30 3.86
68 69 6.809630 TGTGTCTCTATAGATCCGATTCAG 57.190 41.667 2.11 0.00 33.30 3.02
69 70 7.767250 AATGTGTCTCTATAGATCCGATTCA 57.233 36.000 2.11 2.40 33.30 2.57
70 71 9.482627 AAAAATGTGTCTCTATAGATCCGATTC 57.517 33.333 2.11 0.00 33.30 2.52
71 72 9.265901 CAAAAATGTGTCTCTATAGATCCGATT 57.734 33.333 2.11 0.00 33.30 3.34
72 73 8.424918 ACAAAAATGTGTCTCTATAGATCCGAT 58.575 33.333 2.11 0.00 33.30 4.18
73 74 7.706607 CACAAAAATGTGTCTCTATAGATCCGA 59.293 37.037 2.11 0.00 35.25 4.55
74 75 7.845483 CACAAAAATGTGTCTCTATAGATCCG 58.155 38.462 2.11 0.00 35.25 4.18
89 90 3.445805 AGGGAACGAACACACAAAAATGT 59.554 39.130 0.00 0.00 0.00 2.71
90 91 4.040445 AGGGAACGAACACACAAAAATG 57.960 40.909 0.00 0.00 0.00 2.32
91 92 3.242936 CGAGGGAACGAACACACAAAAAT 60.243 43.478 0.00 0.00 35.09 1.82
92 93 2.096174 CGAGGGAACGAACACACAAAAA 59.904 45.455 0.00 0.00 35.09 1.94
93 94 1.666700 CGAGGGAACGAACACACAAAA 59.333 47.619 0.00 0.00 35.09 2.44
94 95 1.292061 CGAGGGAACGAACACACAAA 58.708 50.000 0.00 0.00 35.09 2.83
95 96 0.176219 ACGAGGGAACGAACACACAA 59.824 50.000 0.00 0.00 37.03 3.33
96 97 0.176219 AACGAGGGAACGAACACACA 59.824 50.000 0.00 0.00 37.03 3.72
97 98 1.259770 GAAACGAGGGAACGAACACAC 59.740 52.381 0.00 0.00 37.03 3.82
98 99 1.134759 TGAAACGAGGGAACGAACACA 60.135 47.619 0.00 0.00 37.03 3.72
99 100 1.574134 TGAAACGAGGGAACGAACAC 58.426 50.000 0.00 0.00 37.03 3.32
100 101 2.536761 ATGAAACGAGGGAACGAACA 57.463 45.000 0.00 0.00 37.03 3.18
101 102 3.497262 AGAAATGAAACGAGGGAACGAAC 59.503 43.478 0.00 0.00 37.03 3.95
102 103 3.496884 CAGAAATGAAACGAGGGAACGAA 59.503 43.478 0.00 0.00 37.03 3.85
103 104 3.064207 CAGAAATGAAACGAGGGAACGA 58.936 45.455 0.00 0.00 37.03 3.85
104 105 2.806244 ACAGAAATGAAACGAGGGAACG 59.194 45.455 0.00 0.00 39.31 3.95
105 106 5.411669 ACATACAGAAATGAAACGAGGGAAC 59.588 40.000 0.00 0.00 0.00 3.62
106 107 5.556915 ACATACAGAAATGAAACGAGGGAA 58.443 37.500 0.00 0.00 0.00 3.97
107 108 5.160607 ACATACAGAAATGAAACGAGGGA 57.839 39.130 0.00 0.00 0.00 4.20
108 109 6.106673 ACTACATACAGAAATGAAACGAGGG 58.893 40.000 0.00 0.00 0.00 4.30
109 110 6.255887 GGACTACATACAGAAATGAAACGAGG 59.744 42.308 0.00 0.00 0.00 4.63
110 111 6.811665 TGGACTACATACAGAAATGAAACGAG 59.188 38.462 0.00 0.00 0.00 4.18
111 112 6.693466 TGGACTACATACAGAAATGAAACGA 58.307 36.000 0.00 0.00 0.00 3.85
112 113 6.961359 TGGACTACATACAGAAATGAAACG 57.039 37.500 0.00 0.00 0.00 3.60
115 116 9.513906 TCAAAATGGACTACATACAGAAATGAA 57.486 29.630 0.00 0.00 39.40 2.57
116 117 9.513906 TTCAAAATGGACTACATACAGAAATGA 57.486 29.630 0.00 0.00 39.40 2.57
139 140 9.249457 CGCTCACAAATACTAGAAGATATTTCA 57.751 33.333 0.00 0.00 30.31 2.69
140 141 8.704234 CCGCTCACAAATACTAGAAGATATTTC 58.296 37.037 0.00 0.00 30.31 2.17
141 142 8.421784 TCCGCTCACAAATACTAGAAGATATTT 58.578 33.333 0.00 0.00 32.43 1.40
142 143 7.952671 TCCGCTCACAAATACTAGAAGATATT 58.047 34.615 0.00 0.00 0.00 1.28
143 144 7.309499 CCTCCGCTCACAAATACTAGAAGATAT 60.309 40.741 0.00 0.00 0.00 1.63
144 145 6.016192 CCTCCGCTCACAAATACTAGAAGATA 60.016 42.308 0.00 0.00 0.00 1.98
145 146 5.221342 CCTCCGCTCACAAATACTAGAAGAT 60.221 44.000 0.00 0.00 0.00 2.40
146 147 4.098044 CCTCCGCTCACAAATACTAGAAGA 59.902 45.833 0.00 0.00 0.00 2.87
147 148 4.363999 CCTCCGCTCACAAATACTAGAAG 58.636 47.826 0.00 0.00 0.00 2.85
148 149 3.132289 CCCTCCGCTCACAAATACTAGAA 59.868 47.826 0.00 0.00 0.00 2.10
149 150 2.693591 CCCTCCGCTCACAAATACTAGA 59.306 50.000 0.00 0.00 0.00 2.43
150 151 2.693591 TCCCTCCGCTCACAAATACTAG 59.306 50.000 0.00 0.00 0.00 2.57
151 152 2.693591 CTCCCTCCGCTCACAAATACTA 59.306 50.000 0.00 0.00 0.00 1.82
152 153 1.482593 CTCCCTCCGCTCACAAATACT 59.517 52.381 0.00 0.00 0.00 2.12
153 154 1.207329 ACTCCCTCCGCTCACAAATAC 59.793 52.381 0.00 0.00 0.00 1.89
154 155 1.568504 ACTCCCTCCGCTCACAAATA 58.431 50.000 0.00 0.00 0.00 1.40
155 156 1.482593 CTACTCCCTCCGCTCACAAAT 59.517 52.381 0.00 0.00 0.00 2.32
156 157 0.895530 CTACTCCCTCCGCTCACAAA 59.104 55.000 0.00 0.00 0.00 2.83
157 158 0.251653 ACTACTCCCTCCGCTCACAA 60.252 55.000 0.00 0.00 0.00 3.33
158 159 0.622136 TACTACTCCCTCCGCTCACA 59.378 55.000 0.00 0.00 0.00 3.58
159 160 1.404748 GTTACTACTCCCTCCGCTCAC 59.595 57.143 0.00 0.00 0.00 3.51
160 161 1.284198 AGTTACTACTCCCTCCGCTCA 59.716 52.381 0.00 0.00 0.00 4.26
161 162 2.055684 AGTTACTACTCCCTCCGCTC 57.944 55.000 0.00 0.00 0.00 5.03
162 163 2.422661 GGTAGTTACTACTCCCTCCGCT 60.423 54.545 20.15 0.00 37.16 5.52
163 164 1.952990 GGTAGTTACTACTCCCTCCGC 59.047 57.143 20.15 0.00 37.16 5.54
164 165 3.287867 TGGTAGTTACTACTCCCTCCG 57.712 52.381 20.15 0.00 37.16 4.63
165 166 5.699143 TGTATGGTAGTTACTACTCCCTCC 58.301 45.833 20.15 5.19 37.16 4.30
166 167 8.930846 TTATGTATGGTAGTTACTACTCCCTC 57.069 38.462 20.15 5.78 37.16 4.30
167 168 8.730948 TCTTATGTATGGTAGTTACTACTCCCT 58.269 37.037 20.15 7.07 37.16 4.20
168 169 8.930846 TCTTATGTATGGTAGTTACTACTCCC 57.069 38.462 20.15 6.54 37.16 4.30
196 197 7.743749 TCCCATTTGAAATCATGAAGGAAAAA 58.256 30.769 0.00 0.00 0.00 1.94
197 198 7.313740 TCCCATTTGAAATCATGAAGGAAAA 57.686 32.000 0.00 0.00 0.00 2.29
198 199 6.931790 TCCCATTTGAAATCATGAAGGAAA 57.068 33.333 0.00 0.00 0.00 3.13
199 200 6.497954 ACTTCCCATTTGAAATCATGAAGGAA 59.502 34.615 17.56 10.01 33.91 3.36
200 201 6.018469 ACTTCCCATTTGAAATCATGAAGGA 58.982 36.000 17.56 4.78 33.91 3.36
201 202 6.290294 ACTTCCCATTTGAAATCATGAAGG 57.710 37.500 17.56 4.82 33.91 3.46
202 203 6.091713 GCAACTTCCCATTTGAAATCATGAAG 59.908 38.462 0.00 14.22 35.33 3.02
203 204 5.933463 GCAACTTCCCATTTGAAATCATGAA 59.067 36.000 0.00 0.00 0.00 2.57
204 205 5.481105 GCAACTTCCCATTTGAAATCATGA 58.519 37.500 0.00 0.00 0.00 3.07
205 206 4.632688 GGCAACTTCCCATTTGAAATCATG 59.367 41.667 0.00 0.00 0.00 3.07
206 207 4.835678 GGCAACTTCCCATTTGAAATCAT 58.164 39.130 0.00 0.00 0.00 2.45
207 208 4.270245 GGCAACTTCCCATTTGAAATCA 57.730 40.909 0.00 0.00 0.00 2.57
223 224 0.808755 CGTTTCACCCCATAGGCAAC 59.191 55.000 0.00 0.00 40.58 4.17
224 225 0.693622 TCGTTTCACCCCATAGGCAA 59.306 50.000 0.00 0.00 40.58 4.52
225 226 0.916086 ATCGTTTCACCCCATAGGCA 59.084 50.000 0.00 0.00 40.58 4.75
226 227 1.141053 AGATCGTTTCACCCCATAGGC 59.859 52.381 0.00 0.00 40.58 3.93
227 228 3.560636 AAGATCGTTTCACCCCATAGG 57.439 47.619 0.00 0.00 43.78 2.57
228 229 4.511826 GCTAAAGATCGTTTCACCCCATAG 59.488 45.833 0.00 0.00 0.00 2.23
229 230 4.448210 GCTAAAGATCGTTTCACCCCATA 58.552 43.478 0.00 0.00 0.00 2.74
230 231 3.279434 GCTAAAGATCGTTTCACCCCAT 58.721 45.455 0.00 0.00 0.00 4.00
231 232 2.706890 GCTAAAGATCGTTTCACCCCA 58.293 47.619 0.00 0.00 0.00 4.96
232 233 1.664151 CGCTAAAGATCGTTTCACCCC 59.336 52.381 0.00 0.00 0.00 4.95
241 242 6.462949 GTCAAAAGTCAAATCGCTAAAGATCG 59.537 38.462 0.00 0.00 0.00 3.69
242 243 6.462949 CGTCAAAAGTCAAATCGCTAAAGATC 59.537 38.462 0.00 0.00 0.00 2.75
254 255 6.922247 TTATACACCACGTCAAAAGTCAAA 57.078 33.333 0.00 0.00 0.00 2.69
304 305 4.974591 GCTTCAGCATAAAACTGGTACTG 58.025 43.478 0.00 0.00 41.59 2.74
351 354 3.708121 TCTGCCTTCTCATCAGCTATTCA 59.292 43.478 0.00 0.00 0.00 2.57
352 355 4.309099 CTCTGCCTTCTCATCAGCTATTC 58.691 47.826 0.00 0.00 0.00 1.75
353 356 3.071312 CCTCTGCCTTCTCATCAGCTATT 59.929 47.826 0.00 0.00 0.00 1.73
354 357 2.633967 CCTCTGCCTTCTCATCAGCTAT 59.366 50.000 0.00 0.00 0.00 2.97
355 358 2.037901 CCTCTGCCTTCTCATCAGCTA 58.962 52.381 0.00 0.00 0.00 3.32
356 359 0.831966 CCTCTGCCTTCTCATCAGCT 59.168 55.000 0.00 0.00 0.00 4.24
357 360 0.829333 TCCTCTGCCTTCTCATCAGC 59.171 55.000 0.00 0.00 0.00 4.26
358 361 2.742530 GCTTCCTCTGCCTTCTCATCAG 60.743 54.545 0.00 0.00 0.00 2.90
368 371 0.746204 GCAGGTTAGCTTCCTCTGCC 60.746 60.000 15.54 0.16 43.36 4.85
389 392 3.423154 CTCGGCCACAGAAACCGC 61.423 66.667 2.24 0.00 46.49 5.68
582 585 2.661566 GAGGACGACGACGACGACA 61.662 63.158 25.15 0.00 42.66 4.35
606 609 2.436292 ACGACGACGAGGAGGAGG 60.436 66.667 15.32 0.00 42.66 4.30
607 610 2.800581 CGACGACGACGAGGAGGAG 61.801 68.421 15.32 0.00 42.66 3.69
608 611 2.812609 CGACGACGACGAGGAGGA 60.813 66.667 15.32 0.00 42.66 3.71
730 733 2.606587 GGGCCCCTTCTTGCTCTCA 61.607 63.158 12.23 0.00 0.00 3.27
833 840 2.510918 GAGGAAACCGCCGTAGCC 60.511 66.667 0.00 0.00 34.57 3.93
836 843 2.101783 TGATAAGAGGAAACCGCCGTA 58.898 47.619 0.00 0.00 0.00 4.02
1019 1026 0.398318 AGAGAAGTGTGGGCAAGGAC 59.602 55.000 0.00 0.00 0.00 3.85
1226 1233 1.589716 GGTGAGTGCATTGTCCAGGC 61.590 60.000 0.00 0.00 0.00 4.85
1496 1511 1.378646 GCCAGCTTCTAACCCCCAC 60.379 63.158 0.00 0.00 0.00 4.61
1502 1517 2.229062 GGTTTTCCTGCCAGCTTCTAAC 59.771 50.000 0.00 0.00 36.94 2.34
1638 1664 1.377725 CGATGCTTTGACAGGGCCT 60.378 57.895 0.00 0.00 0.00 5.19
1775 1803 1.068402 TCAATTGCAGCACCAACATCG 60.068 47.619 0.00 0.00 0.00 3.84
1806 1835 1.462616 TGAATGATGTTGAAGCCCCG 58.537 50.000 0.00 0.00 0.00 5.73
1824 1853 8.673626 AGCTATTGTTCGTTTTAATGACAATG 57.326 30.769 9.54 2.90 32.81 2.82
1825 1854 7.968405 GGAGCTATTGTTCGTTTTAATGACAAT 59.032 33.333 5.50 5.50 33.92 2.71
1826 1855 7.041030 TGGAGCTATTGTTCGTTTTAATGACAA 60.041 33.333 0.00 0.00 0.00 3.18
1827 1856 6.428465 TGGAGCTATTGTTCGTTTTAATGACA 59.572 34.615 0.00 0.00 0.00 3.58
1834 1863 6.260936 CAGGATATGGAGCTATTGTTCGTTTT 59.739 38.462 0.00 0.00 0.00 2.43
1916 1955 7.212976 CAGCTTGCCATCTCTACTTATAGAAA 58.787 38.462 0.00 0.00 36.98 2.52
1951 1990 9.566530 TGTTTGATGATTAATGAATGTTAACCG 57.433 29.630 2.48 0.00 0.00 4.44
2000 2043 6.208994 ACCAACAACACCAAAACTTAAGTACA 59.791 34.615 8.92 0.00 0.00 2.90
2034 2077 4.760204 CGGAGAAGCTAAGGGAAAGAAAAA 59.240 41.667 0.00 0.00 0.00 1.94
2039 2082 4.674281 ATACGGAGAAGCTAAGGGAAAG 57.326 45.455 0.00 0.00 0.00 2.62
2070 2114 7.559897 TCCCAAAGAAGACACAGAACTAAAATT 59.440 33.333 0.00 0.00 0.00 1.82
2139 2184 4.947388 GCCCAAGAAATGTATAAGTGTCCA 59.053 41.667 0.00 0.00 0.00 4.02
2145 2191 7.545615 GGAAAACAAGCCCAAGAAATGTATAAG 59.454 37.037 0.00 0.00 0.00 1.73
2148 2194 5.543790 AGGAAAACAAGCCCAAGAAATGTAT 59.456 36.000 0.00 0.00 0.00 2.29
2341 2400 5.594724 TGGGAAAAATGTTACGTTACTCG 57.405 39.130 6.24 0.00 46.00 4.18
2487 2547 3.319405 TCCGATCCAAAGCTATGAGACTC 59.681 47.826 0.00 0.00 0.00 3.36
2489 2549 3.735237 TCCGATCCAAAGCTATGAGAC 57.265 47.619 0.00 0.00 0.00 3.36
2490 2550 3.706594 AGTTCCGATCCAAAGCTATGAGA 59.293 43.478 0.00 0.00 0.00 3.27
2607 2671 7.943413 ATCATGAACTAGACAATCTGATTCG 57.057 36.000 0.00 0.00 29.44 3.34
2686 2842 5.663456 TGTGCAAGCAAAGAAAATTCTTCT 58.337 33.333 8.74 0.86 46.22 2.85
2726 2885 8.903820 GCTTGGTAATTTTGTGATAAGGACTAT 58.096 33.333 0.00 0.00 0.00 2.12
2768 2927 8.955388 TGTTAAGAATAACATAAGCATGCTTGA 58.045 29.630 37.21 23.09 44.90 3.02
2809 2977 3.808726 GCCAGAAGAGATATCAACTGCAG 59.191 47.826 13.48 13.48 0.00 4.41
2814 2982 5.207110 TGCTAGCCAGAAGAGATATCAAC 57.793 43.478 13.29 0.00 0.00 3.18
2880 3048 2.946785 ACTACCCCTATTCTCCTCACG 58.053 52.381 0.00 0.00 0.00 4.35
2902 3164 9.948964 TGAATTCAGATATTATGTGGGTCTATG 57.051 33.333 3.38 0.00 0.00 2.23
2953 3215 4.173036 TGTTATTAGCAAAACAGGCTGC 57.827 40.909 15.89 0.00 42.62 5.25
2991 3253 3.959449 GGACGGAGGGAGTATTTCTTACT 59.041 47.826 0.00 0.00 44.04 2.24
3016 3278 4.036262 AGCTTGCAAAAACGTCTCACATTA 59.964 37.500 0.00 0.00 0.00 1.90
3020 3282 2.475200 AGCTTGCAAAAACGTCTCAC 57.525 45.000 0.00 0.00 0.00 3.51
3021 3283 2.032030 GCTAGCTTGCAAAAACGTCTCA 60.032 45.455 15.53 0.00 0.00 3.27
3023 3285 2.222027 AGCTAGCTTGCAAAAACGTCT 58.778 42.857 22.05 0.00 34.99 4.18
3036 3298 3.822735 TGAGACATTTTTGCAAGCTAGCT 59.177 39.130 12.68 12.68 34.99 3.32
3037 3299 3.916776 GTGAGACATTTTTGCAAGCTAGC 59.083 43.478 6.62 6.62 0.00 3.42
3038 3300 5.112220 TGTGAGACATTTTTGCAAGCTAG 57.888 39.130 0.00 0.00 0.00 3.42
3039 3301 5.710513 ATGTGAGACATTTTTGCAAGCTA 57.289 34.783 0.00 0.00 34.67 3.32
3040 3302 4.595762 ATGTGAGACATTTTTGCAAGCT 57.404 36.364 0.00 0.00 34.67 3.74
3041 3303 6.183360 CCATAATGTGAGACATTTTTGCAAGC 60.183 38.462 7.23 0.00 45.80 4.01
3042 3304 6.311935 CCCATAATGTGAGACATTTTTGCAAG 59.688 38.462 7.23 0.00 45.80 4.01
3043 3305 6.014755 TCCCATAATGTGAGACATTTTTGCAA 60.015 34.615 7.23 0.00 45.80 4.08
3044 3306 5.479724 TCCCATAATGTGAGACATTTTTGCA 59.520 36.000 7.23 0.00 45.80 4.08
3046 3308 6.029607 CGTCCCATAATGTGAGACATTTTTG 58.970 40.000 7.23 6.28 45.80 2.44
3047 3309 5.125417 CCGTCCCATAATGTGAGACATTTTT 59.875 40.000 7.23 0.00 45.80 1.94
3049 3311 4.080582 TCCGTCCCATAATGTGAGACATTT 60.081 41.667 7.23 0.00 45.80 2.32
3051 3313 3.038280 TCCGTCCCATAATGTGAGACAT 58.962 45.455 0.00 0.00 41.31 3.06
3052 3314 2.430694 CTCCGTCCCATAATGTGAGACA 59.569 50.000 0.00 0.00 0.00 3.41
3053 3315 2.224066 CCTCCGTCCCATAATGTGAGAC 60.224 54.545 0.00 0.00 0.00 3.36
3055 3317 1.070758 CCCTCCGTCCCATAATGTGAG 59.929 57.143 0.00 0.00 0.00 3.51
3056 3318 1.128200 CCCTCCGTCCCATAATGTGA 58.872 55.000 0.00 0.00 0.00 3.58
3057 3319 1.070758 CTCCCTCCGTCCCATAATGTG 59.929 57.143 0.00 0.00 0.00 3.21
3058 3320 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3059 3321 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3060 3322 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3061 3323 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3062 3324 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
3063 3325 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
3119 3382 4.927049 ACATGATCACTGGGTGAAATTCT 58.073 39.130 0.00 0.00 45.96 2.40
3127 3390 3.561313 GGGTTGTTACATGATCACTGGGT 60.561 47.826 0.00 0.00 0.00 4.51
3157 3420 1.065199 ACCTCACATCGGCAATCACAT 60.065 47.619 0.00 0.00 0.00 3.21
3187 3450 0.756294 TTCCTCAAGTCAGGCGAACA 59.244 50.000 0.00 0.00 32.91 3.18
3226 3489 2.044793 AATTCTCCTCACACTCCCCA 57.955 50.000 0.00 0.00 0.00 4.96
3230 3493 5.337578 AGCTCTAAATTCTCCTCACACTC 57.662 43.478 0.00 0.00 0.00 3.51
3234 3497 7.990314 AGGAATAAAGCTCTAAATTCTCCTCAC 59.010 37.037 0.00 0.00 0.00 3.51
3290 3553 3.735591 TGTTGCCTATATTAGCCCGTTC 58.264 45.455 0.00 0.00 0.00 3.95
3361 3625 4.759205 GTGGGTGGGGTGGGATGC 62.759 72.222 0.00 0.00 0.00 3.91
3373 3637 3.542602 AGAGGAGGGGGTGTGGGT 61.543 66.667 0.00 0.00 0.00 4.51
3374 3638 2.689034 GAGAGGAGGGGGTGTGGG 60.689 72.222 0.00 0.00 0.00 4.61
3375 3639 0.031111 TATGAGAGGAGGGGGTGTGG 60.031 60.000 0.00 0.00 0.00 4.17
3376 3640 1.123928 GTATGAGAGGAGGGGGTGTG 58.876 60.000 0.00 0.00 0.00 3.82
3377 3641 0.031010 GGTATGAGAGGAGGGGGTGT 60.031 60.000 0.00 0.00 0.00 4.16
3378 3642 0.031111 TGGTATGAGAGGAGGGGGTG 60.031 60.000 0.00 0.00 0.00 4.61
3379 3643 0.031010 GTGGTATGAGAGGAGGGGGT 60.031 60.000 0.00 0.00 0.00 4.95
3380 3644 0.764752 GGTGGTATGAGAGGAGGGGG 60.765 65.000 0.00 0.00 0.00 5.40
3381 3645 0.764752 GGGTGGTATGAGAGGAGGGG 60.765 65.000 0.00 0.00 0.00 4.79
3385 3649 4.699192 CCGGGTGGTATGAGAGGA 57.301 61.111 0.00 0.00 0.00 3.71
3426 3690 2.982130 CCTTAGACAGGGCAGCGT 59.018 61.111 0.00 0.00 39.39 5.07
3431 3695 3.952628 AACGCGCCTTAGACAGGGC 62.953 63.158 5.73 0.00 44.16 5.19
3454 3970 1.003839 GGAAGTGGTCCGTCATGCA 60.004 57.895 0.00 0.00 36.40 3.96
3465 3981 2.030540 CACAAATGTCAGCTGGAAGTGG 60.031 50.000 15.13 1.76 35.30 4.00
3468 3984 1.884579 AGCACAAATGTCAGCTGGAAG 59.115 47.619 15.13 1.06 35.72 3.46
3507 4023 6.849305 GCAAAGTTCAGCTGAAATTCAATTTG 59.151 34.615 34.48 28.60 40.83 2.32
3526 4042 1.267806 CACGGATCTGCAAAGCAAAGT 59.732 47.619 0.00 0.00 38.41 2.66
3527 4043 1.973138 CACGGATCTGCAAAGCAAAG 58.027 50.000 0.00 0.00 38.41 2.77
3666 4194 9.886132 AACGGTTATCTGAAATGATTAGTAGTT 57.114 29.630 0.00 0.00 0.00 2.24
3694 4224 2.968675 ACGTTAAGGAGGCATGTACAC 58.031 47.619 0.00 0.00 0.00 2.90
3695 4225 6.659745 ATATACGTTAAGGAGGCATGTACA 57.340 37.500 0.00 0.00 0.00 2.90
3716 4440 2.190313 CCAGCCGCTGCCAGAATA 59.810 61.111 15.36 0.00 38.69 1.75
3792 4516 6.915349 TGATTTGGTAGGTTAAAAATCACCG 58.085 36.000 6.63 0.00 41.62 4.94
3793 4517 8.984764 GTTTGATTTGGTAGGTTAAAAATCACC 58.015 33.333 9.27 2.59 44.46 4.02
3794 4518 9.758651 AGTTTGATTTGGTAGGTTAAAAATCAC 57.241 29.630 9.27 2.29 44.46 3.06
3808 4532 6.183360 GGCTCATGCTATAAGTTTGATTTGGT 60.183 38.462 0.00 0.00 39.59 3.67
3815 4539 5.355071 TGAACTGGCTCATGCTATAAGTTTG 59.645 40.000 0.00 0.00 39.59 2.93
3817 4541 5.102953 TGAACTGGCTCATGCTATAAGTT 57.897 39.130 0.00 0.00 39.59 2.66
3861 4585 4.905429 TCCACAATTAAGTAGAAGCTGCA 58.095 39.130 1.02 0.00 0.00 4.41
3946 4670 0.753479 ATCGTGGAGGTCTCAGCGAT 60.753 55.000 16.83 16.83 40.41 4.58
3993 4717 2.438021 TGAGTATGGTGGCATTCTACCC 59.562 50.000 0.00 0.00 36.10 3.69
4025 4749 1.153549 CAGTCAGGGCGCTAACCTC 60.154 63.158 7.64 0.00 35.78 3.85
4031 4755 1.302033 CAAGTTCAGTCAGGGCGCT 60.302 57.895 7.64 0.00 0.00 5.92
4059 4783 1.182667 GGGGGAGCATTTGTAACACC 58.817 55.000 0.00 0.00 0.00 4.16
4062 4786 2.427095 GTGATGGGGGAGCATTTGTAAC 59.573 50.000 0.00 0.00 0.00 2.50
4126 4855 3.650942 ACCAGGAAGCCGGATAATAATGA 59.349 43.478 5.05 0.00 0.00 2.57
4134 4863 2.683465 ATGCACCAGGAAGCCGGAT 61.683 57.895 5.05 0.00 0.00 4.18
4136 4865 3.136123 CATGCACCAGGAAGCCGG 61.136 66.667 0.00 0.00 0.00 6.13
4155 4884 5.376854 AAATCTTGTCGGGAAAATCACAG 57.623 39.130 0.00 0.00 0.00 3.66
4160 4889 5.069781 TCACCAAAAATCTTGTCGGGAAAAT 59.930 36.000 0.00 0.00 0.00 1.82
4167 4896 3.361644 CGCAATCACCAAAAATCTTGTCG 59.638 43.478 0.00 0.00 0.00 4.35
4188 4917 4.495472 GTCAATTGCACCAATAACGAATCG 59.505 41.667 0.00 0.00 32.43 3.34
4194 4923 5.030295 CGATCAGTCAATTGCACCAATAAC 58.970 41.667 0.00 0.00 32.43 1.89
4204 4933 4.997905 ACACTTGTCGATCAGTCAATTG 57.002 40.909 0.00 0.00 35.72 2.32
4227 4956 9.436957 ACAATATACCAAGTCTCACAAGTTTAG 57.563 33.333 0.00 0.00 0.00 1.85
4229 4958 7.390718 GGACAATATACCAAGTCTCACAAGTTT 59.609 37.037 0.00 0.00 0.00 2.66
4230 4959 6.879458 GGACAATATACCAAGTCTCACAAGTT 59.121 38.462 0.00 0.00 0.00 2.66
4231 4960 6.407202 GGACAATATACCAAGTCTCACAAGT 58.593 40.000 0.00 0.00 0.00 3.16
4232 4961 5.817816 GGGACAATATACCAAGTCTCACAAG 59.182 44.000 0.00 0.00 31.86 3.16
4233 4962 5.249622 TGGGACAATATACCAAGTCTCACAA 59.750 40.000 0.00 0.00 36.62 3.33
4234 4963 4.780554 TGGGACAATATACCAAGTCTCACA 59.219 41.667 0.00 0.00 36.62 3.58
4235 4964 5.353394 TGGGACAATATACCAAGTCTCAC 57.647 43.478 0.00 0.00 36.62 3.51
4236 4965 4.141711 GCTGGGACAATATACCAAGTCTCA 60.142 45.833 0.00 0.00 39.03 3.27
4237 4966 4.381411 GCTGGGACAATATACCAAGTCTC 58.619 47.826 0.00 0.00 38.70 3.36
4326 5061 7.037873 GGGAGTAATCCCCCAAAAACTTAAAAT 60.038 37.037 17.89 0.00 44.18 1.82
4327 5062 6.270463 GGGAGTAATCCCCCAAAAACTTAAAA 59.730 38.462 17.89 0.00 44.18 1.52
4343 5078 5.591877 ACATTTTGAGATGCAGGGAGTAATC 59.408 40.000 0.00 0.00 0.00 1.75
4354 5089 6.767902 TGAATAGGACCTACATTTTGAGATGC 59.232 38.462 2.46 0.00 0.00 3.91
4369 5104 6.208599 TGAGTTTGGACAAAATGAATAGGACC 59.791 38.462 2.21 0.00 31.33 4.46
4400 5135 5.047802 GGAATGCCAGAAATCAAACTTGAGA 60.048 40.000 0.00 0.00 41.08 3.27
4403 5138 4.885413 TGGAATGCCAGAAATCAAACTTG 58.115 39.130 0.00 0.00 39.92 3.16
4452 5187 8.945057 GGTGTAGTAATACCCGAACATTTTAAA 58.055 33.333 0.00 0.00 30.85 1.52
4453 5188 8.099537 TGGTGTAGTAATACCCGAACATTTTAA 58.900 33.333 0.00 0.00 36.08 1.52
4454 5189 7.619050 TGGTGTAGTAATACCCGAACATTTTA 58.381 34.615 0.00 0.00 36.08 1.52
4455 5190 6.474630 TGGTGTAGTAATACCCGAACATTTT 58.525 36.000 0.00 0.00 36.08 1.82
4456 5191 6.052405 TGGTGTAGTAATACCCGAACATTT 57.948 37.500 0.00 0.00 36.08 2.32
4457 5192 5.680594 TGGTGTAGTAATACCCGAACATT 57.319 39.130 0.00 0.00 36.08 2.71
4458 5193 5.129815 ACATGGTGTAGTAATACCCGAACAT 59.870 40.000 0.00 0.00 36.08 2.71
4459 5194 4.467082 ACATGGTGTAGTAATACCCGAACA 59.533 41.667 0.00 0.00 36.08 3.18
4460 5195 5.014808 ACATGGTGTAGTAATACCCGAAC 57.985 43.478 0.00 0.00 36.08 3.95
4461 5196 5.680594 AACATGGTGTAGTAATACCCGAA 57.319 39.130 0.00 0.00 36.08 4.30
4462 5197 5.680594 AAACATGGTGTAGTAATACCCGA 57.319 39.130 0.00 0.00 36.08 5.14
4463 5198 6.746745 AAAAACATGGTGTAGTAATACCCG 57.253 37.500 0.00 0.00 36.08 5.28
4498 5233 7.329471 TGCTCTAGATTCGACATTAATGTATGC 59.671 37.037 20.83 8.24 41.95 3.14
4512 5247 4.975502 GTGAGAGTCAATGCTCTAGATTCG 59.024 45.833 7.08 0.00 45.03 3.34
4524 5259 4.747108 CACAAAGAGTTCGTGAGAGTCAAT 59.253 41.667 0.00 0.00 43.69 2.57
4528 5263 4.098044 TCTTCACAAAGAGTTCGTGAGAGT 59.902 41.667 0.00 0.00 40.52 3.24
4554 5289 3.515602 AAAGGACAGAGAACAAGGCAT 57.484 42.857 0.00 0.00 0.00 4.40
4557 5292 5.335191 GCATGTAAAAGGACAGAGAACAAGG 60.335 44.000 0.00 0.00 31.51 3.61
4564 5299 3.691609 GGAAGGCATGTAAAAGGACAGAG 59.308 47.826 0.00 0.00 31.51 3.35
4567 5302 3.153919 GTGGAAGGCATGTAAAAGGACA 58.846 45.455 0.00 0.00 0.00 4.02
4576 5311 1.003355 CCTCGTGTGGAAGGCATGT 60.003 57.895 0.00 0.00 0.00 3.21
4588 5323 3.182572 GTCGCTAAGCATTATTCCTCGTG 59.817 47.826 0.00 0.00 0.00 4.35
4589 5324 3.181479 TGTCGCTAAGCATTATTCCTCGT 60.181 43.478 0.00 0.00 0.00 4.18
4591 5326 4.153117 CCATGTCGCTAAGCATTATTCCTC 59.847 45.833 0.00 0.00 0.00 3.71
4621 5441 3.181507 GCGCTTGCAAGAAAGACATCATA 60.182 43.478 30.39 0.00 38.92 2.15
4646 5466 2.830321 CCCTAAACTCACCGTACCTCTT 59.170 50.000 0.00 0.00 0.00 2.85
4654 5474 3.625745 AGTTGCCCTAAACTCACCG 57.374 52.632 0.00 0.00 35.44 4.94
4676 5497 3.496131 CCGTTTGGTGATCCGCGG 61.496 66.667 22.12 22.12 38.74 6.46
4733 5576 3.275617 TTGATTCCTACGGTTGGATGG 57.724 47.619 12.03 0.00 33.09 3.51
4742 5585 3.123804 CGGGAGACATTTGATTCCTACG 58.876 50.000 5.53 0.00 0.00 3.51
4748 5591 2.026822 ACTGAGCGGGAGACATTTGATT 60.027 45.455 0.00 0.00 0.00 2.57
4750 5593 0.976641 ACTGAGCGGGAGACATTTGA 59.023 50.000 0.00 0.00 0.00 2.69
4775 5620 2.058705 TCAATACCCCGGGCATATGAA 58.941 47.619 17.73 4.37 0.00 2.57
4776 5621 1.735926 TCAATACCCCGGGCATATGA 58.264 50.000 17.73 13.99 0.00 2.15
4778 5623 3.603965 TTTTCAATACCCCGGGCATAT 57.396 42.857 17.73 12.55 0.00 1.78
4907 5780 8.035984 TCATATGACAACTAAAATACGTGTCCA 58.964 33.333 0.00 0.00 0.00 4.02
4914 5787 9.463443 GGGCATTTCATATGACAACTAAAATAC 57.537 33.333 4.48 0.00 0.00 1.89
4915 5788 9.194972 TGGGCATTTCATATGACAACTAAAATA 57.805 29.630 4.48 0.00 0.00 1.40
4916 5789 8.076910 TGGGCATTTCATATGACAACTAAAAT 57.923 30.769 4.48 0.00 0.00 1.82
4917 5790 7.473735 TGGGCATTTCATATGACAACTAAAA 57.526 32.000 4.48 0.00 0.00 1.52
4918 5791 7.658525 ATGGGCATTTCATATGACAACTAAA 57.341 32.000 4.48 0.00 0.00 1.85
4919 5792 8.938801 ATATGGGCATTTCATATGACAACTAA 57.061 30.769 4.48 0.00 36.70 2.24
4921 5794 8.963725 CATATATGGGCATTTCATATGACAACT 58.036 33.333 4.48 0.00 38.05 3.16
4922 5795 7.703621 GCATATATGGGCATTTCATATGACAAC 59.296 37.037 14.51 0.00 38.05 3.32
4923 5796 7.616542 AGCATATATGGGCATTTCATATGACAA 59.383 33.333 14.51 4.03 38.05 3.18
4924 5797 7.120716 AGCATATATGGGCATTTCATATGACA 58.879 34.615 14.51 0.00 38.05 3.58
4925 5798 7.283807 TGAGCATATATGGGCATTTCATATGAC 59.716 37.037 14.51 0.00 38.05 3.06
4926 5799 7.348033 TGAGCATATATGGGCATTTCATATGA 58.652 34.615 14.51 0.00 38.05 2.15
4927 5800 7.576861 TGAGCATATATGGGCATTTCATATG 57.423 36.000 14.51 0.00 38.05 1.78
4928 5801 8.777578 ATTGAGCATATATGGGCATTTCATAT 57.222 30.769 14.51 0.00 39.99 1.78
4929 5802 8.598202 AATTGAGCATATATGGGCATTTCATA 57.402 30.769 14.51 0.00 0.00 2.15
4930 5803 7.490657 AATTGAGCATATATGGGCATTTCAT 57.509 32.000 14.51 0.00 0.00 2.57
4931 5804 6.921486 AATTGAGCATATATGGGCATTTCA 57.079 33.333 14.51 0.00 0.00 2.69
4932 5805 8.284945 TCTAATTGAGCATATATGGGCATTTC 57.715 34.615 14.51 0.00 0.00 2.17
4933 5806 8.834004 ATCTAATTGAGCATATATGGGCATTT 57.166 30.769 14.51 0.00 0.00 2.32
4934 5807 8.057011 TGATCTAATTGAGCATATATGGGCATT 58.943 33.333 14.51 0.82 36.01 3.56
4935 5808 7.501559 GTGATCTAATTGAGCATATATGGGCAT 59.498 37.037 14.51 0.00 43.41 4.40
4936 5809 6.825213 GTGATCTAATTGAGCATATATGGGCA 59.175 38.462 14.51 0.00 43.41 5.36
4937 5810 7.052873 AGTGATCTAATTGAGCATATATGGGC 58.947 38.462 14.51 0.88 43.41 5.36
4938 5811 8.484575 AGAGTGATCTAATTGAGCATATATGGG 58.515 37.037 14.51 0.00 43.41 4.00
4939 5812 9.315525 CAGAGTGATCTAATTGAGCATATATGG 57.684 37.037 14.51 0.00 43.41 2.74
4943 5816 8.813951 TCATCAGAGTGATCTAATTGAGCATAT 58.186 33.333 0.00 0.00 43.41 1.78
4944 5817 8.186709 TCATCAGAGTGATCTAATTGAGCATA 57.813 34.615 0.00 0.00 43.41 3.14
4945 5818 7.015389 TCTCATCAGAGTGATCTAATTGAGCAT 59.985 37.037 0.00 0.00 43.41 3.79
4946 5819 6.323225 TCTCATCAGAGTGATCTAATTGAGCA 59.677 38.462 0.00 0.00 42.66 4.26
4947 5820 6.642131 GTCTCATCAGAGTGATCTAATTGAGC 59.358 42.308 0.00 0.00 42.66 4.26
4948 5821 7.944061 AGTCTCATCAGAGTGATCTAATTGAG 58.056 38.462 0.00 0.00 42.66 3.02
4949 5822 7.894753 AGTCTCATCAGAGTGATCTAATTGA 57.105 36.000 0.00 0.00 42.66 2.57
4960 5833 4.085009 TGACATGTCAGTCTCATCAGAGT 58.915 43.478 24.56 0.00 37.64 3.24
4961 5834 4.715527 TGACATGTCAGTCTCATCAGAG 57.284 45.455 24.56 0.00 39.27 3.35
4962 5835 5.244626 TCTTTGACATGTCAGTCTCATCAGA 59.755 40.000 26.48 15.45 41.13 3.27
4963 5836 5.476614 TCTTTGACATGTCAGTCTCATCAG 58.523 41.667 26.48 13.77 41.13 2.90
4964 5837 5.473066 TCTTTGACATGTCAGTCTCATCA 57.527 39.130 26.48 8.48 41.13 3.07
4965 5838 6.981762 ATTCTTTGACATGTCAGTCTCATC 57.018 37.500 26.48 0.00 41.13 2.92
4966 5839 7.046652 CCTATTCTTTGACATGTCAGTCTCAT 58.953 38.462 26.48 17.90 41.13 2.90
4967 5840 6.401394 CCTATTCTTTGACATGTCAGTCTCA 58.599 40.000 26.48 10.69 41.13 3.27
4968 5841 6.900568 CCTATTCTTTGACATGTCAGTCTC 57.099 41.667 26.48 0.62 41.13 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.