Multiple sequence alignment - TraesCS7A01G222800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G222800 chr7A 100.000 7629 0 0 1 7629 191901892 191909520 0.000000e+00 14089
1 TraesCS7A01G222800 chr7B 92.903 6890 365 67 828 7627 154765830 154772685 0.000000e+00 9901
2 TraesCS7A01G222800 chr7B 84.009 444 49 14 388 827 611299409 611299834 2.560000e-109 407
3 TraesCS7A01G222800 chr7D 92.493 5182 271 57 2498 7627 184932168 184937283 0.000000e+00 7306
4 TraesCS7A01G222800 chr7D 93.052 734 44 6 828 1557 184930865 184931595 0.000000e+00 1066
5 TraesCS7A01G222800 chr7D 94.801 577 26 3 1885 2458 184931586 184932161 0.000000e+00 896
6 TraesCS7A01G222800 chr7D 88.665 644 70 3 1025 1667 79046514 79045873 0.000000e+00 782
7 TraesCS7A01G222800 chr2B 86.417 773 95 6 42 811 765543528 765544293 0.000000e+00 837
8 TraesCS7A01G222800 chr2B 89.252 642 67 2 1027 1667 86849490 86848850 0.000000e+00 802
9 TraesCS7A01G222800 chr1A 89.875 642 62 3 1027 1667 365221814 365222453 0.000000e+00 822
10 TraesCS7A01G222800 chr1A 77.927 521 99 12 88 601 588729156 588729667 2.070000e-80 311
11 TraesCS7A01G222800 chr5B 89.441 644 66 2 1025 1667 290877891 290878533 0.000000e+00 811
12 TraesCS7A01G222800 chr1B 88.509 644 72 2 1025 1667 92078040 92078682 0.000000e+00 778
13 TraesCS7A01G222800 chr6B 88.509 644 71 3 1025 1667 396296634 396297275 0.000000e+00 776
14 TraesCS7A01G222800 chr6B 85.852 622 81 7 3 619 183375485 183376104 0.000000e+00 654
15 TraesCS7A01G222800 chr2D 85.655 725 97 5 42 762 623507249 623507970 0.000000e+00 756
16 TraesCS7A01G222800 chr6D 80.336 834 140 16 3 824 7094713 7093892 1.820000e-170 610
17 TraesCS7A01G222800 chr6D 84.488 361 53 3 126 485 89354192 89354550 3.390000e-93 353
18 TraesCS7A01G222800 chr6D 85.765 281 37 3 66 344 303979169 303978890 2.080000e-75 294
19 TraesCS7A01G222800 chr2A 83.908 609 82 9 222 826 755025093 755025689 1.110000e-157 568
20 TraesCS7A01G222800 chr6A 80.108 744 130 12 88 824 6721288 6720556 8.710000e-149 538
21 TraesCS7A01G222800 chr6A 88.330 437 47 3 1025 1460 298324776 298325209 8.770000e-144 521


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G222800 chr7A 191901892 191909520 7628 False 14089.000000 14089 100.000000 1 7629 1 chr7A.!!$F1 7628
1 TraesCS7A01G222800 chr7B 154765830 154772685 6855 False 9901.000000 9901 92.903000 828 7627 1 chr7B.!!$F1 6799
2 TraesCS7A01G222800 chr7D 184930865 184937283 6418 False 3089.333333 7306 93.448667 828 7627 3 chr7D.!!$F1 6799
3 TraesCS7A01G222800 chr7D 79045873 79046514 641 True 782.000000 782 88.665000 1025 1667 1 chr7D.!!$R1 642
4 TraesCS7A01G222800 chr2B 765543528 765544293 765 False 837.000000 837 86.417000 42 811 1 chr2B.!!$F1 769
5 TraesCS7A01G222800 chr2B 86848850 86849490 640 True 802.000000 802 89.252000 1027 1667 1 chr2B.!!$R1 640
6 TraesCS7A01G222800 chr1A 365221814 365222453 639 False 822.000000 822 89.875000 1027 1667 1 chr1A.!!$F1 640
7 TraesCS7A01G222800 chr1A 588729156 588729667 511 False 311.000000 311 77.927000 88 601 1 chr1A.!!$F2 513
8 TraesCS7A01G222800 chr5B 290877891 290878533 642 False 811.000000 811 89.441000 1025 1667 1 chr5B.!!$F1 642
9 TraesCS7A01G222800 chr1B 92078040 92078682 642 False 778.000000 778 88.509000 1025 1667 1 chr1B.!!$F1 642
10 TraesCS7A01G222800 chr6B 396296634 396297275 641 False 776.000000 776 88.509000 1025 1667 1 chr6B.!!$F2 642
11 TraesCS7A01G222800 chr6B 183375485 183376104 619 False 654.000000 654 85.852000 3 619 1 chr6B.!!$F1 616
12 TraesCS7A01G222800 chr2D 623507249 623507970 721 False 756.000000 756 85.655000 42 762 1 chr2D.!!$F1 720
13 TraesCS7A01G222800 chr6D 7093892 7094713 821 True 610.000000 610 80.336000 3 824 1 chr6D.!!$R1 821
14 TraesCS7A01G222800 chr2A 755025093 755025689 596 False 568.000000 568 83.908000 222 826 1 chr2A.!!$F1 604
15 TraesCS7A01G222800 chr6A 6720556 6721288 732 True 538.000000 538 80.108000 88 824 1 chr6A.!!$R1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 300 0.179234 TGCGTCAGTGGTTCCTTCAA 59.821 50.000 0.00 0.0 0.00 2.69 F
1369 1383 0.035317 TCTCAGTTTGGTGCGATGCT 59.965 50.000 0.00 0.0 0.00 3.79 F
1953 1967 0.323087 CGGTTCGGAAGGGGGAAAAT 60.323 55.000 0.00 0.0 0.00 1.82 F
3169 3189 0.894835 TCTGCAGTCTTACGATGCCA 59.105 50.000 14.67 0.0 39.22 4.92 F
3172 3192 1.001974 TGCAGTCTTACGATGCCAACT 59.998 47.619 0.00 0.0 39.22 3.16 F
4467 4522 0.182537 CAGGGTTCCACTTGGACACA 59.817 55.000 0.00 0.0 45.39 3.72 F
5913 5974 0.318762 ACCAGCTCGTCAAGGAAGTC 59.681 55.000 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 1980 0.109153 AGCAGCATCACAGACACCAA 59.891 50.000 0.00 0.0 0.00 3.67 R
3188 3219 1.064654 GCAGGCACTAGCAAATACAGC 59.935 52.381 0.00 0.0 44.61 4.40 R
3711 3746 0.315251 GCCACCTTCTTTGCCAGAAC 59.685 55.000 0.00 0.0 36.51 3.01 R
4286 4340 2.656560 AGTAGCGTACAAAGCCAGAG 57.343 50.000 0.00 0.0 34.64 3.35 R
4614 4669 3.354467 TCTCGGTCTTTAGGAGGAAGTC 58.646 50.000 0.00 0.0 0.00 3.01 R
5958 6019 0.322816 GCTGCTTGATGTTCCCCTCA 60.323 55.000 0.00 0.0 0.00 3.86 R
6989 7337 1.071605 GTAGAAGTGAACTGCTGCCG 58.928 55.000 0.83 0.0 32.96 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.452651 CTCCAATGGCGATGGCTGT 60.453 57.895 0.00 0.00 37.88 4.40
56 57 2.769652 GATGGCTGTGTTGGGGAGCA 62.770 60.000 0.00 0.00 34.20 4.26
57 58 2.674380 GGCTGTGTTGGGGAGCAG 60.674 66.667 0.00 0.00 34.20 4.24
58 59 2.674380 GCTGTGTTGGGGAGCAGG 60.674 66.667 0.00 0.00 32.70 4.85
69 72 2.539081 GGAGCAGGGGTTCCTTGGT 61.539 63.158 0.40 0.40 42.67 3.67
85 88 1.098712 TGGTTCGTGTTTGTCCAGGC 61.099 55.000 0.00 0.00 0.00 4.85
130 137 1.007734 GTCGGTGCTGACGTCTTCA 60.008 57.895 17.92 11.39 0.00 3.02
144 151 3.751698 ACGTCTTCACCAGGAATAAAAGC 59.248 43.478 0.00 0.00 34.32 3.51
207 214 0.392706 AGTCGCAGATGTGTGTCCAA 59.607 50.000 3.06 0.00 40.67 3.53
209 216 0.392706 TCGCAGATGTGTGTCCAAGT 59.607 50.000 3.06 0.00 35.52 3.16
289 297 1.157870 CGTTGCGTCAGTGGTTCCTT 61.158 55.000 0.00 0.00 0.00 3.36
292 300 0.179234 TGCGTCAGTGGTTCCTTCAA 59.821 50.000 0.00 0.00 0.00 2.69
296 304 0.534203 TCAGTGGTTCCTTCAACGCC 60.534 55.000 0.00 0.00 35.59 5.68
298 306 1.652563 GTGGTTCCTTCAACGCCAC 59.347 57.895 0.00 0.00 42.03 5.01
365 374 2.766263 AGCGTTCTCATCCAAGGTATGA 59.234 45.455 0.00 0.00 32.56 2.15
367 376 4.588951 AGCGTTCTCATCCAAGGTATGATA 59.411 41.667 0.00 0.00 33.08 2.15
368 377 5.070446 AGCGTTCTCATCCAAGGTATGATAA 59.930 40.000 0.00 0.00 33.08 1.75
370 379 6.260050 GCGTTCTCATCCAAGGTATGATAAAA 59.740 38.462 0.00 0.00 33.08 1.52
402 411 3.662759 TCAAAGGTGGAAGAAGGTTGT 57.337 42.857 0.00 0.00 0.00 3.32
404 413 3.053991 TCAAAGGTGGAAGAAGGTTGTCA 60.054 43.478 0.00 0.00 0.00 3.58
408 417 3.053619 AGGTGGAAGAAGGTTGTCAGTTT 60.054 43.478 0.00 0.00 0.00 2.66
409 418 3.315470 GGTGGAAGAAGGTTGTCAGTTTC 59.685 47.826 0.00 0.00 0.00 2.78
410 419 4.200092 GTGGAAGAAGGTTGTCAGTTTCT 58.800 43.478 0.00 0.00 0.00 2.52
412 421 3.565902 GGAAGAAGGTTGTCAGTTTCTGG 59.434 47.826 0.00 0.00 30.77 3.86
413 422 4.451900 GAAGAAGGTTGTCAGTTTCTGGA 58.548 43.478 0.00 0.00 30.77 3.86
414 423 4.078639 AGAAGGTTGTCAGTTTCTGGAG 57.921 45.455 0.00 0.00 31.51 3.86
415 424 3.456277 AGAAGGTTGTCAGTTTCTGGAGT 59.544 43.478 0.00 0.00 31.51 3.85
424 433 1.605451 TTTCTGGAGTCCTCGGCGA 60.605 57.895 10.14 10.14 0.00 5.54
463 472 1.067669 TCAGAATCGCGATCCAAGAGG 59.932 52.381 23.92 8.15 0.00 3.69
509 519 4.908687 ACAGCGACAAGTGCGGCA 62.909 61.111 0.00 0.00 37.44 5.69
516 526 4.368808 CAAGTGCGGCACCGTTCG 62.369 66.667 28.14 9.62 42.09 3.95
572 582 2.636830 TGCTGCTATGGCTTTCTCTTC 58.363 47.619 1.68 0.00 39.59 2.87
573 583 2.238144 TGCTGCTATGGCTTTCTCTTCT 59.762 45.455 1.68 0.00 39.59 2.85
580 590 6.098838 TGCTATGGCTTTCTCTTCTATCTTGA 59.901 38.462 1.68 0.00 39.59 3.02
589 599 7.487822 TTCTCTTCTATCTTGACTTGATGGT 57.512 36.000 0.00 0.00 0.00 3.55
606 616 1.343465 TGGTGACCGTTTCTTCTCCTC 59.657 52.381 0.00 0.00 0.00 3.71
608 618 2.037381 GGTGACCGTTTCTTCTCCTCTT 59.963 50.000 0.00 0.00 0.00 2.85
620 630 1.924320 CTCCTCTTCGACGGACGCTT 61.924 60.000 0.00 0.00 42.26 4.68
621 631 1.514443 CCTCTTCGACGGACGCTTC 60.514 63.158 0.00 0.00 42.26 3.86
622 632 1.863880 CTCTTCGACGGACGCTTCG 60.864 63.158 0.00 0.00 42.26 3.79
623 633 2.874780 CTTCGACGGACGCTTCGG 60.875 66.667 0.00 0.00 42.26 4.30
635 645 4.717629 CTTCGGCGACAGCGGTGA 62.718 66.667 23.44 0.00 46.35 4.02
650 660 2.699251 GGTGACGGAAAATTGTGGTC 57.301 50.000 0.00 0.00 0.00 4.02
651 661 1.950909 GGTGACGGAAAATTGTGGTCA 59.049 47.619 0.00 0.00 35.44 4.02
652 662 2.031157 GGTGACGGAAAATTGTGGTCAG 60.031 50.000 0.43 0.00 38.21 3.51
653 663 2.616842 GTGACGGAAAATTGTGGTCAGT 59.383 45.455 0.43 0.00 38.21 3.41
654 664 3.066203 GTGACGGAAAATTGTGGTCAGTT 59.934 43.478 0.43 0.00 38.21 3.16
655 665 3.697045 TGACGGAAAATTGTGGTCAGTTT 59.303 39.130 0.00 0.00 35.54 2.66
656 666 4.158764 TGACGGAAAATTGTGGTCAGTTTT 59.841 37.500 2.16 2.16 42.95 2.43
657 667 4.429108 ACGGAAAATTGTGGTCAGTTTTG 58.571 39.130 6.26 0.00 41.29 2.44
658 668 4.081917 ACGGAAAATTGTGGTCAGTTTTGT 60.082 37.500 6.26 0.00 41.29 2.83
659 669 4.867608 CGGAAAATTGTGGTCAGTTTTGTT 59.132 37.500 6.26 0.00 41.29 2.83
660 670 5.220378 CGGAAAATTGTGGTCAGTTTTGTTG 60.220 40.000 6.26 0.00 41.29 3.33
661 671 5.064579 GGAAAATTGTGGTCAGTTTTGTTGG 59.935 40.000 6.26 0.00 41.29 3.77
662 672 4.817318 AATTGTGGTCAGTTTTGTTGGT 57.183 36.364 0.00 0.00 0.00 3.67
663 673 3.584406 TTGTGGTCAGTTTTGTTGGTG 57.416 42.857 0.00 0.00 0.00 4.17
664 674 1.821753 TGTGGTCAGTTTTGTTGGTGG 59.178 47.619 0.00 0.00 0.00 4.61
665 675 1.822371 GTGGTCAGTTTTGTTGGTGGT 59.178 47.619 0.00 0.00 0.00 4.16
666 676 2.232696 GTGGTCAGTTTTGTTGGTGGTT 59.767 45.455 0.00 0.00 0.00 3.67
667 677 2.232452 TGGTCAGTTTTGTTGGTGGTTG 59.768 45.455 0.00 0.00 0.00 3.77
668 678 2.267426 GTCAGTTTTGTTGGTGGTTGC 58.733 47.619 0.00 0.00 0.00 4.17
669 679 1.895798 TCAGTTTTGTTGGTGGTTGCA 59.104 42.857 0.00 0.00 0.00 4.08
670 680 2.300152 TCAGTTTTGTTGGTGGTTGCAA 59.700 40.909 0.00 0.00 0.00 4.08
671 681 2.672381 CAGTTTTGTTGGTGGTTGCAAG 59.328 45.455 0.00 0.00 0.00 4.01
672 682 2.006169 GTTTTGTTGGTGGTTGCAAGG 58.994 47.619 0.00 0.00 0.00 3.61
673 683 0.539051 TTTGTTGGTGGTTGCAAGGG 59.461 50.000 0.00 0.00 0.00 3.95
674 684 1.965754 TTGTTGGTGGTTGCAAGGGC 61.966 55.000 0.00 0.00 41.68 5.19
675 685 2.841988 TTGGTGGTTGCAAGGGCC 60.842 61.111 0.00 0.00 40.13 5.80
676 686 3.686098 TTGGTGGTTGCAAGGGCCA 62.686 57.895 6.18 5.48 40.13 5.36
677 687 2.604382 GGTGGTTGCAAGGGCCAT 60.604 61.111 6.18 0.00 40.13 4.40
678 688 2.658422 GTGGTTGCAAGGGCCATG 59.342 61.111 6.18 4.98 40.13 3.66
679 689 1.907807 GTGGTTGCAAGGGCCATGA 60.908 57.895 13.93 0.00 40.13 3.07
680 690 1.152376 TGGTTGCAAGGGCCATGAA 60.152 52.632 13.93 0.00 40.13 2.57
681 691 1.186917 TGGTTGCAAGGGCCATGAAG 61.187 55.000 13.93 0.00 40.13 3.02
682 692 0.899717 GGTTGCAAGGGCCATGAAGA 60.900 55.000 13.93 0.00 40.13 2.87
683 693 1.188863 GTTGCAAGGGCCATGAAGAT 58.811 50.000 13.93 0.00 40.13 2.40
684 694 1.551883 GTTGCAAGGGCCATGAAGATT 59.448 47.619 13.93 0.00 40.13 2.40
685 695 1.941377 TGCAAGGGCCATGAAGATTT 58.059 45.000 13.93 0.00 40.13 2.17
686 696 2.259012 TGCAAGGGCCATGAAGATTTT 58.741 42.857 13.93 0.00 40.13 1.82
687 697 2.638855 TGCAAGGGCCATGAAGATTTTT 59.361 40.909 13.93 0.00 40.13 1.94
708 718 7.458038 TTTTTCTGTAAATTTTCCGTGCTTC 57.542 32.000 0.00 0.00 0.00 3.86
709 719 6.385649 TTTCTGTAAATTTTCCGTGCTTCT 57.614 33.333 0.00 0.00 0.00 2.85
710 720 6.385649 TTCTGTAAATTTTCCGTGCTTCTT 57.614 33.333 0.00 0.00 0.00 2.52
711 721 5.757886 TCTGTAAATTTTCCGTGCTTCTTG 58.242 37.500 0.00 0.00 0.00 3.02
712 722 5.298276 TCTGTAAATTTTCCGTGCTTCTTGT 59.702 36.000 0.00 0.00 0.00 3.16
713 723 6.483974 TCTGTAAATTTTCCGTGCTTCTTGTA 59.516 34.615 0.00 0.00 0.00 2.41
714 724 7.012515 TCTGTAAATTTTCCGTGCTTCTTGTAA 59.987 33.333 0.00 0.00 0.00 2.41
715 725 7.653647 TGTAAATTTTCCGTGCTTCTTGTAAT 58.346 30.769 0.00 0.00 0.00 1.89
716 726 8.138712 TGTAAATTTTCCGTGCTTCTTGTAATT 58.861 29.630 0.00 0.00 0.00 1.40
717 727 8.974408 GTAAATTTTCCGTGCTTCTTGTAATTT 58.026 29.630 0.00 0.00 0.00 1.82
718 728 8.432110 AAATTTTCCGTGCTTCTTGTAATTTT 57.568 26.923 0.00 0.00 0.00 1.82
719 729 6.820470 TTTTCCGTGCTTCTTGTAATTTTG 57.180 33.333 0.00 0.00 0.00 2.44
720 730 3.896122 TCCGTGCTTCTTGTAATTTTGC 58.104 40.909 0.00 0.00 0.00 3.68
721 731 3.568007 TCCGTGCTTCTTGTAATTTTGCT 59.432 39.130 0.00 0.00 0.00 3.91
722 732 4.037446 TCCGTGCTTCTTGTAATTTTGCTT 59.963 37.500 0.00 0.00 0.00 3.91
723 733 4.148696 CCGTGCTTCTTGTAATTTTGCTTG 59.851 41.667 0.00 0.00 0.00 4.01
724 734 4.375305 CGTGCTTCTTGTAATTTTGCTTGC 60.375 41.667 0.00 0.00 0.00 4.01
725 735 4.746611 GTGCTTCTTGTAATTTTGCTTGCT 59.253 37.500 0.00 0.00 0.00 3.91
726 736 4.746115 TGCTTCTTGTAATTTTGCTTGCTG 59.254 37.500 0.00 0.00 0.00 4.41
727 737 4.746611 GCTTCTTGTAATTTTGCTTGCTGT 59.253 37.500 0.00 0.00 0.00 4.40
728 738 5.332808 GCTTCTTGTAATTTTGCTTGCTGTG 60.333 40.000 0.00 0.00 0.00 3.66
729 739 5.261209 TCTTGTAATTTTGCTTGCTGTGT 57.739 34.783 0.00 0.00 0.00 3.72
730 740 5.659463 TCTTGTAATTTTGCTTGCTGTGTT 58.341 33.333 0.00 0.00 0.00 3.32
731 741 5.519566 TCTTGTAATTTTGCTTGCTGTGTTG 59.480 36.000 0.00 0.00 0.00 3.33
732 742 4.753233 TGTAATTTTGCTTGCTGTGTTGT 58.247 34.783 0.00 0.00 0.00 3.32
733 743 4.803088 TGTAATTTTGCTTGCTGTGTTGTC 59.197 37.500 0.00 0.00 0.00 3.18
734 744 3.806625 ATTTTGCTTGCTGTGTTGTCT 57.193 38.095 0.00 0.00 0.00 3.41
735 745 2.849880 TTTGCTTGCTGTGTTGTCTC 57.150 45.000 0.00 0.00 0.00 3.36
736 746 2.042686 TTGCTTGCTGTGTTGTCTCT 57.957 45.000 0.00 0.00 0.00 3.10
737 747 2.042686 TGCTTGCTGTGTTGTCTCTT 57.957 45.000 0.00 0.00 0.00 2.85
738 748 2.368439 TGCTTGCTGTGTTGTCTCTTT 58.632 42.857 0.00 0.00 0.00 2.52
739 749 2.097954 TGCTTGCTGTGTTGTCTCTTTG 59.902 45.455 0.00 0.00 0.00 2.77
740 750 2.542411 GCTTGCTGTGTTGTCTCTTTGG 60.542 50.000 0.00 0.00 0.00 3.28
741 751 2.708216 TGCTGTGTTGTCTCTTTGGA 57.292 45.000 0.00 0.00 0.00 3.53
742 752 3.213206 TGCTGTGTTGTCTCTTTGGAT 57.787 42.857 0.00 0.00 0.00 3.41
743 753 3.554934 TGCTGTGTTGTCTCTTTGGATT 58.445 40.909 0.00 0.00 0.00 3.01
744 754 3.953612 TGCTGTGTTGTCTCTTTGGATTT 59.046 39.130 0.00 0.00 0.00 2.17
745 755 4.036734 TGCTGTGTTGTCTCTTTGGATTTC 59.963 41.667 0.00 0.00 0.00 2.17
746 756 4.276926 GCTGTGTTGTCTCTTTGGATTTCT 59.723 41.667 0.00 0.00 0.00 2.52
747 757 5.561725 GCTGTGTTGTCTCTTTGGATTTCTC 60.562 44.000 0.00 0.00 0.00 2.87
748 758 4.821805 TGTGTTGTCTCTTTGGATTTCTCC 59.178 41.667 0.00 0.00 42.45 3.71
749 759 5.066593 GTGTTGTCTCTTTGGATTTCTCCT 58.933 41.667 0.00 0.00 42.59 3.69
750 760 6.183361 TGTGTTGTCTCTTTGGATTTCTCCTA 60.183 38.462 0.00 0.00 42.59 2.94
751 761 6.710744 GTGTTGTCTCTTTGGATTTCTCCTAA 59.289 38.462 0.00 0.00 42.59 2.69
759 769 6.530019 TTTGGATTTCTCCTAAGATTTGCC 57.470 37.500 0.00 0.00 42.59 4.52
760 770 5.191727 TGGATTTCTCCTAAGATTTGCCA 57.808 39.130 0.00 0.00 42.59 4.92
761 771 5.769835 TGGATTTCTCCTAAGATTTGCCAT 58.230 37.500 0.00 0.00 42.59 4.40
762 772 5.595542 TGGATTTCTCCTAAGATTTGCCATG 59.404 40.000 0.00 0.00 42.59 3.66
763 773 5.595952 GGATTTCTCCTAAGATTTGCCATGT 59.404 40.000 0.00 0.00 38.65 3.21
764 774 6.772716 GGATTTCTCCTAAGATTTGCCATGTA 59.227 38.462 0.00 0.00 38.65 2.29
765 775 7.255277 GGATTTCTCCTAAGATTTGCCATGTAC 60.255 40.741 0.00 0.00 38.65 2.90
766 776 5.957771 TCTCCTAAGATTTGCCATGTACT 57.042 39.130 0.00 0.00 0.00 2.73
767 777 5.674525 TCTCCTAAGATTTGCCATGTACTG 58.325 41.667 0.00 0.00 0.00 2.74
768 778 5.189736 TCTCCTAAGATTTGCCATGTACTGT 59.810 40.000 0.00 0.00 0.00 3.55
769 779 6.382859 TCTCCTAAGATTTGCCATGTACTGTA 59.617 38.462 0.00 0.00 0.00 2.74
770 780 7.071196 TCTCCTAAGATTTGCCATGTACTGTAT 59.929 37.037 0.00 0.00 0.00 2.29
771 781 6.992123 TCCTAAGATTTGCCATGTACTGTATG 59.008 38.462 0.00 0.00 0.00 2.39
772 782 6.767902 CCTAAGATTTGCCATGTACTGTATGT 59.232 38.462 0.00 0.00 0.00 2.29
773 783 7.283127 CCTAAGATTTGCCATGTACTGTATGTT 59.717 37.037 0.00 0.00 0.00 2.71
774 784 6.441093 AGATTTGCCATGTACTGTATGTTG 57.559 37.500 0.00 0.00 0.00 3.33
775 785 5.945784 AGATTTGCCATGTACTGTATGTTGT 59.054 36.000 0.00 0.00 0.00 3.32
776 786 7.109501 AGATTTGCCATGTACTGTATGTTGTA 58.890 34.615 0.00 0.00 0.00 2.41
777 787 7.609918 AGATTTGCCATGTACTGTATGTTGTAA 59.390 33.333 0.00 0.00 0.00 2.41
778 788 7.695480 TTTGCCATGTACTGTATGTTGTAAT 57.305 32.000 0.00 0.00 0.00 1.89
779 789 6.918892 TGCCATGTACTGTATGTTGTAATC 57.081 37.500 0.00 0.00 0.00 1.75
780 790 6.649155 TGCCATGTACTGTATGTTGTAATCT 58.351 36.000 0.00 0.00 0.00 2.40
781 791 6.538381 TGCCATGTACTGTATGTTGTAATCTG 59.462 38.462 0.00 0.00 0.00 2.90
782 792 6.511767 GCCATGTACTGTATGTTGTAATCTGC 60.512 42.308 0.00 0.00 0.00 4.26
783 793 6.763135 CCATGTACTGTATGTTGTAATCTGCT 59.237 38.462 0.00 0.00 0.00 4.24
784 794 7.254556 CCATGTACTGTATGTTGTAATCTGCTG 60.255 40.741 0.00 0.00 0.00 4.41
785 795 6.930731 TGTACTGTATGTTGTAATCTGCTGA 58.069 36.000 0.00 0.00 0.00 4.26
786 796 7.555965 TGTACTGTATGTTGTAATCTGCTGAT 58.444 34.615 0.00 0.00 33.70 2.90
787 797 6.915544 ACTGTATGTTGTAATCTGCTGATG 57.084 37.500 6.88 0.00 32.44 3.07
788 798 6.409704 ACTGTATGTTGTAATCTGCTGATGT 58.590 36.000 6.88 0.93 32.44 3.06
789 799 6.881065 ACTGTATGTTGTAATCTGCTGATGTT 59.119 34.615 6.88 0.00 32.44 2.71
790 800 8.040727 ACTGTATGTTGTAATCTGCTGATGTTA 58.959 33.333 6.88 0.00 32.44 2.41
791 801 8.424274 TGTATGTTGTAATCTGCTGATGTTAG 57.576 34.615 6.88 0.00 32.44 2.34
792 802 8.040727 TGTATGTTGTAATCTGCTGATGTTAGT 58.959 33.333 6.88 0.00 32.44 2.24
793 803 9.529325 GTATGTTGTAATCTGCTGATGTTAGTA 57.471 33.333 6.88 0.00 32.44 1.82
795 805 9.618890 ATGTTGTAATCTGCTGATGTTAGTAAT 57.381 29.630 6.88 0.00 32.44 1.89
806 816 9.845740 TGCTGATGTTAGTAATATAAATGTGGT 57.154 29.630 0.00 0.00 0.00 4.16
844 854 9.967346 AGAAAAAGAAGAGCCAAATAAAACTAC 57.033 29.630 0.00 0.00 0.00 2.73
847 857 4.941873 AGAAGAGCCAAATAAAACTACGGG 59.058 41.667 0.00 0.00 0.00 5.28
858 868 1.323412 AACTACGGGCATTTGCAACA 58.677 45.000 0.00 0.00 44.36 3.33
913 923 6.183360 GCCCACAAAAATATCTGACTTGCTAT 60.183 38.462 0.00 0.00 0.00 2.97
954 965 5.569026 GCTTACTAAATCCTAATCCCCTCCG 60.569 48.000 0.00 0.00 0.00 4.63
976 987 1.702957 TCGTCTTCTCCCCCACAAAAT 59.297 47.619 0.00 0.00 0.00 1.82
1049 1060 0.904865 TCGTCTCCACAGCCTCCATT 60.905 55.000 0.00 0.00 0.00 3.16
1082 1093 1.595093 GCCATTTCTCAACCCCACGG 61.595 60.000 0.00 0.00 0.00 4.94
1147 1158 3.083997 GTCCACCTCCGCCTCCAT 61.084 66.667 0.00 0.00 0.00 3.41
1283 1294 2.187163 GTTAGCCCCGACTCTGCC 59.813 66.667 0.00 0.00 0.00 4.85
1302 1313 2.356125 GCCCAATTAACTGCCTCTCTGA 60.356 50.000 0.00 0.00 0.00 3.27
1327 1340 0.175760 TATGAGTTGGAGAGCCACGC 59.824 55.000 0.00 0.00 45.94 5.34
1329 1342 1.739562 GAGTTGGAGAGCCACGCAG 60.740 63.158 0.00 0.00 45.94 5.18
1335 1348 2.358003 AGAGCCACGCAGTTCTGC 60.358 61.111 13.97 13.97 41.61 4.26
1345 1358 1.664016 CGCAGTTCTGCAATGTGGAAC 60.664 52.381 21.89 7.50 39.43 3.62
1346 1359 1.610522 GCAGTTCTGCAATGTGGAACT 59.389 47.619 18.26 11.38 46.89 3.01
1359 1372 4.963276 TGTGGAACTTTGTCTCAGTTTG 57.037 40.909 0.00 0.00 38.04 2.93
1369 1383 0.035317 TCTCAGTTTGGTGCGATGCT 59.965 50.000 0.00 0.00 0.00 3.79
1373 1387 1.806542 CAGTTTGGTGCGATGCTTAGT 59.193 47.619 0.00 0.00 0.00 2.24
1374 1388 1.806542 AGTTTGGTGCGATGCTTAGTG 59.193 47.619 0.00 0.00 0.00 2.74
1380 1394 2.123342 GTGCGATGCTTAGTGCTAGAG 58.877 52.381 0.00 0.00 43.37 2.43
1385 1399 3.815962 CGATGCTTAGTGCTAGAGTAGGA 59.184 47.826 0.00 0.00 43.37 2.94
1386 1400 4.319911 CGATGCTTAGTGCTAGAGTAGGAC 60.320 50.000 0.00 0.00 46.12 3.85
1390 1404 5.163077 TGCTTAGTGCTAGAGTAGGACCTAT 60.163 44.000 4.06 0.00 46.85 2.57
1401 1415 6.308566 AGAGTAGGACCTATACTGATGAACC 58.691 44.000 4.06 0.00 33.64 3.62
1402 1416 6.027025 AGTAGGACCTATACTGATGAACCA 57.973 41.667 4.06 0.00 32.27 3.67
1408 1422 5.615289 ACCTATACTGATGAACCAATGCTC 58.385 41.667 0.00 0.00 0.00 4.26
1413 1427 3.376234 ACTGATGAACCAATGCTCGATTG 59.624 43.478 0.00 0.00 41.20 2.67
1420 1434 2.358898 ACCAATGCTCGATTGTAATGGC 59.641 45.455 0.00 0.00 40.07 4.40
1427 1441 1.481363 TCGATTGTAATGGCCGTGGTA 59.519 47.619 0.00 0.00 0.00 3.25
1563 1577 8.514594 TGCTAAAACCTGTATCAAATGAAGAAG 58.485 33.333 0.00 0.00 0.00 2.85
1592 1606 5.818136 ATTCGTGAGGACAAACATTATGG 57.182 39.130 0.00 0.00 0.00 2.74
1629 1643 2.493547 GCCAGGAATGTGGGCTTAC 58.506 57.895 0.00 0.00 44.32 2.34
1702 1716 2.285220 GTGTGTCAGTGTGTGCTACTTG 59.715 50.000 0.00 0.00 0.00 3.16
1703 1717 1.261619 GTGTCAGTGTGTGCTACTTGC 59.738 52.381 0.00 0.00 43.25 4.01
1784 1798 1.104577 TGGGGTTTCGCCAAGTGTTC 61.105 55.000 3.11 0.00 43.44 3.18
1791 1805 4.379082 GGTTTCGCCAAGTGTTCGATATTT 60.379 41.667 0.00 0.00 37.17 1.40
1797 1811 6.019075 TCGCCAAGTGTTCGATATTTTCATAG 60.019 38.462 0.00 0.00 0.00 2.23
1801 1815 9.490663 CCAAGTGTTCGATATTTTCATAGAAAC 57.509 33.333 0.00 0.00 0.00 2.78
1821 1835 3.016736 ACCGAGCCCTGATAATTTTGTG 58.983 45.455 0.00 0.00 0.00 3.33
1886 1900 8.830580 TCATGTAATCTAGTATTTTCAGCTTGC 58.169 33.333 0.00 0.00 0.00 4.01
1923 1937 9.334947 ACAATCAGTTGATCATAGGTAAATCAG 57.665 33.333 0.00 0.00 38.71 2.90
1945 1959 3.057337 ACCAGACGGTTCGGAAGG 58.943 61.111 4.02 0.00 46.31 3.46
1953 1967 0.323087 CGGTTCGGAAGGGGGAAAAT 60.323 55.000 0.00 0.00 0.00 1.82
1966 1980 8.670490 GGAAGGGGGAAAATAGATAATTCTACT 58.330 37.037 0.00 0.00 37.28 2.57
2177 2193 4.884668 TTGTCCTCGGTATGAACTTCTT 57.115 40.909 0.00 0.00 0.00 2.52
2239 2256 5.175491 CACAATGGATTCTTTGTTTCCAACG 59.825 40.000 2.53 0.00 42.53 4.10
2274 2291 5.048013 AGCAAAATTAGTTCTGGTAACCTGC 60.048 40.000 0.00 0.00 0.00 4.85
2395 2412 8.416329 AGAGATGAAGCACTGTTTAACATTTTT 58.584 29.630 0.00 0.00 0.00 1.94
2494 2511 9.503399 GACTTGTCTTTCTCCCTCTAAAAATAA 57.497 33.333 0.00 0.00 0.00 1.40
2548 2565 2.889678 TGCTCAGCTGATATCGTCATCT 59.110 45.455 18.63 0.00 35.97 2.90
2944 2964 2.644798 ACAGAGGCCTACAGGTGATTTT 59.355 45.455 4.42 0.00 37.57 1.82
3118 3138 8.295569 ACAAAGTGACGAACTATTCTTCTTAC 57.704 34.615 0.00 0.00 38.56 2.34
3169 3189 0.894835 TCTGCAGTCTTACGATGCCA 59.105 50.000 14.67 0.00 39.22 4.92
3172 3192 1.001974 TGCAGTCTTACGATGCCAACT 59.998 47.619 0.00 0.00 39.22 3.16
3173 3193 2.076863 GCAGTCTTACGATGCCAACTT 58.923 47.619 0.00 0.00 33.81 2.66
3174 3194 3.259064 GCAGTCTTACGATGCCAACTTA 58.741 45.455 0.00 0.00 33.81 2.24
3177 3208 5.050972 GCAGTCTTACGATGCCAACTTATAC 60.051 44.000 0.00 0.00 33.81 1.47
3180 3211 8.082852 CAGTCTTACGATGCCAACTTATACTAT 58.917 37.037 0.00 0.00 0.00 2.12
3188 3219 8.804743 CGATGCCAACTTATACTATTAATACCG 58.195 37.037 0.00 0.00 0.00 4.02
3238 3269 4.682859 GCTCAGGGCTATTATGGCTGATAG 60.683 50.000 0.00 0.00 38.06 2.08
3265 3296 5.945784 TGATTATTGTCTGGTTCTCAAAGGG 59.054 40.000 0.00 0.00 0.00 3.95
3416 3449 8.543774 ACTGATGGTCTGATAGTTGAATAAGTT 58.456 33.333 0.00 0.00 0.00 2.66
3520 3554 2.620115 AGTCCAGTGAACACAATTGCTG 59.380 45.455 5.05 5.95 0.00 4.41
3523 3557 2.101249 CCAGTGAACACAATTGCTGGTT 59.899 45.455 15.56 12.78 38.80 3.67
3579 3613 2.133281 TCAGATTCAGTGGCAATGGG 57.867 50.000 15.62 0.61 0.00 4.00
3620 3654 4.888326 AGATGAGATAAGACCATGAGGC 57.112 45.455 0.00 0.00 39.06 4.70
3627 3661 1.919600 AAGACCATGAGGCTGGGAGC 61.920 60.000 0.00 0.00 40.85 4.70
3680 3715 3.336694 ACAGGGGGTAATCTGGTCATTTT 59.663 43.478 0.00 0.00 35.47 1.82
3710 3745 3.159472 TCTCATTGTTCTGCATTTGCCT 58.841 40.909 0.00 0.00 41.18 4.75
3711 3746 3.057104 TCTCATTGTTCTGCATTTGCCTG 60.057 43.478 0.00 0.00 41.18 4.85
3731 3766 2.362752 GTTCTGGCAAAGAAGGTGGCA 61.363 52.381 1.56 0.57 45.69 4.92
3946 3986 6.072838 AGTGTCAAACAGCATTATGACTTCTG 60.073 38.462 12.05 0.00 42.03 3.02
3948 3988 6.262944 TGTCAAACAGCATTATGACTTCTGTT 59.737 34.615 9.16 9.16 46.27 3.16
3949 3989 6.580041 GTCAAACAGCATTATGACTTCTGTTG 59.420 38.462 13.70 9.69 44.35 3.33
4008 4048 3.433615 GGATGTATGAACTATGCGGCTTC 59.566 47.826 0.00 0.00 0.00 3.86
4012 4052 2.489938 TGAACTATGCGGCTTCCTTT 57.510 45.000 0.00 0.00 0.00 3.11
4200 4254 4.213059 ACAGGTTTGTTTGTTTTTGCACAG 59.787 37.500 0.00 0.00 32.28 3.66
4221 4275 5.630680 ACAGCTGCATTCTGTTTTATTTTCG 59.369 36.000 15.27 0.00 41.61 3.46
4231 4285 7.851822 TCTGTTTTATTTTCGCAACTTCATC 57.148 32.000 0.00 0.00 0.00 2.92
4302 4356 0.679505 TGTCTCTGGCTTTGTACGCT 59.320 50.000 0.00 0.00 0.00 5.07
4323 4377 5.622378 GCTACTTTGATTGCAACTGACTAC 58.378 41.667 0.00 0.00 32.79 2.73
4438 4493 7.729116 TCATTCTATCTTGTGATGCACATCTA 58.271 34.615 11.66 0.00 44.16 1.98
4467 4522 0.182537 CAGGGTTCCACTTGGACACA 59.817 55.000 0.00 0.00 45.39 3.72
4614 4669 3.684788 GTGCCCAGTTTACTGTGAGTATG 59.315 47.826 8.91 0.00 42.27 2.39
4622 4677 6.809196 CAGTTTACTGTGAGTATGACTTCCTC 59.191 42.308 1.69 0.00 39.09 3.71
4623 4678 5.916661 TTACTGTGAGTATGACTTCCTCC 57.083 43.478 0.00 0.00 29.64 4.30
4624 4679 4.054359 ACTGTGAGTATGACTTCCTCCT 57.946 45.455 0.00 0.00 0.00 3.69
4648 4703 5.646577 AAGACCGAGATGTATATACCTGC 57.353 43.478 10.38 0.19 0.00 4.85
4663 4718 2.736347 ACCTGCGTACTCCACTCTTAT 58.264 47.619 0.00 0.00 0.00 1.73
4781 4836 5.939447 TCATGTGGGAAATATAGATGCACA 58.061 37.500 0.00 0.00 0.00 4.57
4809 4864 2.645838 AGTCCTGTTTGACTGCACAT 57.354 45.000 0.00 0.00 43.80 3.21
4888 4943 7.715657 TCATTCCCATTTTGACTGTATTATGC 58.284 34.615 0.00 0.00 0.00 3.14
5004 5059 5.163581 TGAGGTTTCTATTCTACCGCTGTAC 60.164 44.000 0.00 0.00 37.04 2.90
5013 5068 8.133627 TCTATTCTACCGCTGTACTATTTGTTC 58.866 37.037 0.00 0.00 0.00 3.18
5089 5144 6.162777 TGTTGAACCTGTTTTCTTTTTGGAG 58.837 36.000 0.00 0.00 0.00 3.86
5092 5147 6.630071 TGAACCTGTTTTCTTTTTGGAGAAG 58.370 36.000 0.00 0.00 37.01 2.85
5110 5165 5.207110 AGAAGTACTCCCGATTGATCATG 57.793 43.478 0.00 0.00 0.00 3.07
5114 5169 3.652057 ACTCCCGATTGATCATGGTTT 57.348 42.857 0.00 0.00 0.00 3.27
5177 5232 4.805219 TCATACGATACGATGGTTGATGG 58.195 43.478 0.00 0.00 0.00 3.51
5223 5281 4.021102 TCCCTTCTGATTGAAACAGGTC 57.979 45.455 2.56 0.00 36.22 3.85
5321 5379 1.687996 CCAACTGGGAAAGGTTGTGGT 60.688 52.381 0.00 0.00 40.56 4.16
5373 5431 6.918022 CCGAATTATTATTTTTGCAGGGAGAC 59.082 38.462 0.00 0.00 0.00 3.36
5620 5679 9.468532 GCTTTCTCAATGTATTTATTGATTCCC 57.531 33.333 0.00 0.00 43.80 3.97
5621 5680 9.669353 CTTTCTCAATGTATTTATTGATTCCCG 57.331 33.333 0.00 0.00 43.80 5.14
5672 5731 2.208431 CTAGCATCCCTTTCAAGCGAG 58.792 52.381 0.00 0.00 0.00 5.03
5736 5795 8.571336 ACATTACTAGGATCATTAAGCAAATGC 58.429 33.333 6.87 0.00 44.03 3.56
5791 5850 7.775397 ATTTGCAGGTAAATAACATGATTGC 57.225 32.000 0.00 0.00 42.55 3.56
5811 5870 3.166657 GCTGTTCATTTGTGATTCGAGC 58.833 45.455 0.00 0.00 0.00 5.03
5836 5895 6.752815 CGATAGAACCTCTACTTTTGACTTCC 59.247 42.308 0.00 0.00 30.79 3.46
5849 5908 1.270625 TGACTTCCGGTCCACACATTC 60.271 52.381 0.00 0.00 43.89 2.67
5853 5912 1.890876 TCCGGTCCACACATTCTTTG 58.109 50.000 0.00 0.00 0.00 2.77
5855 5914 1.535462 CCGGTCCACACATTCTTTGTC 59.465 52.381 0.00 0.00 36.00 3.18
5876 5937 6.794374 TGTCCATGCATTAACAACATATCAC 58.206 36.000 8.16 0.00 0.00 3.06
5878 5939 5.008514 TCCATGCATTAACAACATATCACCG 59.991 40.000 0.00 0.00 0.00 4.94
5913 5974 0.318762 ACCAGCTCGTCAAGGAAGTC 59.681 55.000 0.00 0.00 0.00 3.01
5958 6019 7.423199 TCAAACGCTATAATCAAGACTACGAT 58.577 34.615 0.00 0.00 0.00 3.73
5995 6056 4.040461 AGCAGCAGGTTCTTAACTGTTCTA 59.960 41.667 0.00 0.00 37.07 2.10
5996 6057 4.755123 GCAGCAGGTTCTTAACTGTTCTAA 59.245 41.667 0.00 0.00 37.07 2.10
6074 6135 4.278419 GCAACACCCTTTTGATCTTACTGT 59.722 41.667 0.00 0.00 0.00 3.55
6078 6139 4.455877 CACCCTTTTGATCTTACTGTGACC 59.544 45.833 0.00 0.00 0.00 4.02
6079 6140 4.351111 ACCCTTTTGATCTTACTGTGACCT 59.649 41.667 0.00 0.00 0.00 3.85
6080 6141 4.938226 CCCTTTTGATCTTACTGTGACCTC 59.062 45.833 0.00 0.00 0.00 3.85
6099 6165 7.217825 GTGACCTCGCTACTAAAATATATACGC 59.782 40.741 0.00 0.00 0.00 4.42
6100 6166 7.094677 TGACCTCGCTACTAAAATATATACGCA 60.095 37.037 0.00 0.00 0.00 5.24
6160 6226 4.258543 TGTTAAACAGCCATGCCTAGTAC 58.741 43.478 0.00 0.00 0.00 2.73
6161 6227 4.019681 TGTTAAACAGCCATGCCTAGTACT 60.020 41.667 0.00 0.00 0.00 2.73
6162 6228 2.990066 AACAGCCATGCCTAGTACTC 57.010 50.000 0.00 0.00 0.00 2.59
6183 6249 4.250464 TCGTATTAAGTGAACCAAGGCAG 58.750 43.478 0.00 0.00 0.00 4.85
6205 6271 3.885901 GTGCCAAGGAAATTATCTCCCTC 59.114 47.826 0.00 0.00 32.95 4.30
6206 6272 3.788142 TGCCAAGGAAATTATCTCCCTCT 59.212 43.478 0.00 0.00 32.95 3.69
6207 6273 4.975147 TGCCAAGGAAATTATCTCCCTCTA 59.025 41.667 0.00 0.00 32.95 2.43
6208 6274 5.163195 TGCCAAGGAAATTATCTCCCTCTAC 60.163 44.000 0.00 0.00 32.95 2.59
6210 6276 5.608860 CCAAGGAAATTATCTCCCTCTACCT 59.391 44.000 0.00 0.00 32.95 3.08
6211 6277 6.101881 CCAAGGAAATTATCTCCCTCTACCTT 59.898 42.308 0.00 0.00 34.92 3.50
6251 6317 6.294397 GCTGGAAAATCTCATTCTTTGTCTGT 60.294 38.462 0.00 0.00 0.00 3.41
6258 6324 3.885297 CTCATTCTTTGTCTGTTGTGGGT 59.115 43.478 0.00 0.00 0.00 4.51
6306 6372 3.060615 GAGGCTGCCAAGGTGCTG 61.061 66.667 22.65 0.00 0.00 4.41
6342 6408 3.626217 AGAACTGCACGATCGAGTACATA 59.374 43.478 24.34 0.00 0.00 2.29
6410 6476 1.294659 GGCGTGCAAACTCTCTCTGG 61.295 60.000 0.00 0.00 0.00 3.86
6436 6503 2.951642 CCTTGGTTTTGCAGACAGAAGA 59.048 45.455 11.60 0.00 0.00 2.87
6449 6516 5.269313 CAGACAGAAGAGTTTGCTTTGTTC 58.731 41.667 0.00 0.00 0.00 3.18
6468 6535 5.473931 TGTTCATAGCACAAGAGAGAAGTC 58.526 41.667 0.00 0.00 0.00 3.01
6503 6570 6.972901 TGTAGATGTCAAGTTTGCTCTATACG 59.027 38.462 0.00 0.00 0.00 3.06
6548 6615 6.533730 TCCCGAGCTCAAATATCATAAACAT 58.466 36.000 15.40 0.00 0.00 2.71
6549 6616 7.676004 TCCCGAGCTCAAATATCATAAACATA 58.324 34.615 15.40 0.00 0.00 2.29
6550 6617 7.602644 TCCCGAGCTCAAATATCATAAACATAC 59.397 37.037 15.40 0.00 0.00 2.39
6551 6618 7.604164 CCCGAGCTCAAATATCATAAACATACT 59.396 37.037 15.40 0.00 0.00 2.12
6552 6619 8.651588 CCGAGCTCAAATATCATAAACATACTC 58.348 37.037 15.40 0.00 0.00 2.59
6553 6620 8.651588 CGAGCTCAAATATCATAAACATACTCC 58.348 37.037 15.40 0.00 0.00 3.85
6554 6621 9.494271 GAGCTCAAATATCATAAACATACTCCA 57.506 33.333 9.40 0.00 0.00 3.86
6555 6622 9.851686 AGCTCAAATATCATAAACATACTCCAA 57.148 29.630 0.00 0.00 0.00 3.53
6624 6951 6.855763 ATTTCCATTTCTGCCAAGACATAA 57.144 33.333 0.00 0.00 29.98 1.90
6681 7029 1.134946 CCGCACAAATCCTTTGGATCC 59.865 52.381 4.20 4.20 42.27 3.36
6706 7054 6.238566 CGATTATTCATGTGCAATCCTGAACT 60.239 38.462 0.00 0.00 31.47 3.01
6762 7110 1.470632 CGGGAGCTCATGAACTCTGTC 60.471 57.143 22.14 12.84 33.29 3.51
6764 7112 2.418471 GGGAGCTCATGAACTCTGTCAG 60.418 54.545 22.14 0.00 33.29 3.51
6879 7227 0.326264 AGAGTGCAATGGACACCCTC 59.674 55.000 7.79 0.00 38.87 4.30
6887 7235 0.179000 ATGGACACCCTCGCATCTTC 59.821 55.000 0.00 0.00 0.00 2.87
6890 7238 0.037326 GACACCCTCGCATCTTCACA 60.037 55.000 0.00 0.00 0.00 3.58
6989 7337 5.844004 AGTAAATCATCGTGGTGGTAGATC 58.156 41.667 0.00 0.00 0.00 2.75
6992 7340 0.597637 CATCGTGGTGGTAGATCGGC 60.598 60.000 0.00 0.00 0.00 5.54
7126 7474 2.120718 ACCTGAAGCCCTCCGACT 59.879 61.111 0.00 0.00 0.00 4.18
7135 7483 3.827898 CCTCCGACTCCGTCCTGC 61.828 72.222 0.00 0.00 0.00 4.85
7174 7522 4.394712 GGGTCCGTGTGCTCCAGG 62.395 72.222 0.00 0.00 0.00 4.45
7319 7667 1.884926 GCCATCTTCTTCCCGAGCG 60.885 63.158 0.00 0.00 0.00 5.03
7534 7885 3.308705 GAACGGACGGTGAGGGGT 61.309 66.667 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.160748 GAGCTGAGGGAGGGAGCC 61.161 72.222 0.00 0.00 32.86 4.70
6 7 3.535962 CGAGCTGAGGGAGGGAGC 61.536 72.222 0.00 0.00 0.00 4.70
32 33 2.048023 CCAACACAGCCATCGCCAT 61.048 57.895 0.00 0.00 34.57 4.40
33 34 2.672651 CCAACACAGCCATCGCCA 60.673 61.111 0.00 0.00 34.57 5.69
39 40 3.496309 CTGCTCCCCAACACAGCCA 62.496 63.158 0.00 0.00 31.68 4.75
45 46 2.780924 AACCCCTGCTCCCCAACA 60.781 61.111 0.00 0.00 0.00 3.33
57 58 0.466739 AACACGAACCAAGGAACCCC 60.467 55.000 0.00 0.00 0.00 4.95
58 59 1.066454 CAAACACGAACCAAGGAACCC 59.934 52.381 0.00 0.00 0.00 4.11
69 72 2.158871 ACTAAGCCTGGACAAACACGAA 60.159 45.455 0.00 0.00 0.00 3.85
85 88 2.132762 ACGTCGCCTGAACAAACTAAG 58.867 47.619 0.00 0.00 0.00 2.18
120 125 4.610605 TTTATTCCTGGTGAAGACGTCA 57.389 40.909 19.50 0.00 36.14 4.35
130 137 2.307686 TCCGGAAGCTTTTATTCCTGGT 59.692 45.455 0.00 0.00 43.45 4.00
289 297 1.971167 GGCTTCATGGTGGCGTTGA 60.971 57.895 0.00 0.00 0.00 3.18
292 300 1.112315 TTTTGGCTTCATGGTGGCGT 61.112 50.000 0.00 0.00 0.00 5.68
296 304 4.021192 ACCAATACTTTTGGCTTCATGGTG 60.021 41.667 4.31 0.00 43.23 4.17
298 306 4.021192 ACACCAATACTTTTGGCTTCATGG 60.021 41.667 4.31 0.00 43.23 3.66
344 353 2.766263 TCATACCTTGGATGAGAACGCT 59.234 45.455 0.00 0.00 0.00 5.07
370 379 5.888982 TCCACCTTTGAAGAAACTCTAGT 57.111 39.130 0.00 0.00 0.00 2.57
396 405 2.104963 GGACTCCAGAAACTGACAACCT 59.895 50.000 0.00 0.00 32.44 3.50
402 411 1.257743 CCGAGGACTCCAGAAACTGA 58.742 55.000 0.00 0.00 32.44 3.41
404 413 1.878656 CGCCGAGGACTCCAGAAACT 61.879 60.000 0.00 0.00 0.00 2.66
408 417 2.750637 GTCGCCGAGGACTCCAGA 60.751 66.667 0.00 0.00 34.09 3.86
409 418 4.180946 CGTCGCCGAGGACTCCAG 62.181 72.222 0.00 0.00 34.75 3.86
412 421 2.504244 CAACGTCGCCGAGGACTC 60.504 66.667 14.36 0.00 37.88 3.36
413 422 4.719369 GCAACGTCGCCGAGGACT 62.719 66.667 14.36 0.00 37.88 3.85
516 526 0.514691 CTCTGAACAAGAGTTGCCGC 59.485 55.000 0.00 0.00 46.48 6.53
524 534 4.194640 GCATTATGAGCCTCTGAACAAGA 58.805 43.478 0.00 0.00 0.00 3.02
526 536 3.943381 CTGCATTATGAGCCTCTGAACAA 59.057 43.478 0.00 0.00 0.00 2.83
572 582 4.115516 CGGTCACCATCAAGTCAAGATAG 58.884 47.826 0.00 0.00 0.00 2.08
573 583 3.513912 ACGGTCACCATCAAGTCAAGATA 59.486 43.478 0.00 0.00 0.00 1.98
580 590 2.930826 AGAAACGGTCACCATCAAGT 57.069 45.000 0.00 0.00 0.00 3.16
589 599 2.030185 CGAAGAGGAGAAGAAACGGTCA 60.030 50.000 0.00 0.00 0.00 4.02
606 616 2.874780 CCGAAGCGTCCGTCGAAG 60.875 66.667 0.00 0.00 44.08 3.79
624 634 1.289109 ATTTTCCGTCACCGCTGTCG 61.289 55.000 0.00 0.00 0.00 4.35
625 635 0.872388 AATTTTCCGTCACCGCTGTC 59.128 50.000 0.00 0.00 0.00 3.51
626 636 0.591170 CAATTTTCCGTCACCGCTGT 59.409 50.000 0.00 0.00 0.00 4.40
627 637 0.591170 ACAATTTTCCGTCACCGCTG 59.409 50.000 0.00 0.00 0.00 5.18
628 638 0.591170 CACAATTTTCCGTCACCGCT 59.409 50.000 0.00 0.00 0.00 5.52
629 639 0.386731 CCACAATTTTCCGTCACCGC 60.387 55.000 0.00 0.00 0.00 5.68
630 640 0.948678 ACCACAATTTTCCGTCACCG 59.051 50.000 0.00 0.00 0.00 4.94
631 641 1.950909 TGACCACAATTTTCCGTCACC 59.049 47.619 0.00 0.00 0.00 4.02
632 642 2.616842 ACTGACCACAATTTTCCGTCAC 59.383 45.455 0.00 0.00 30.65 3.67
633 643 2.925724 ACTGACCACAATTTTCCGTCA 58.074 42.857 0.00 0.00 32.78 4.35
634 644 3.982576 AACTGACCACAATTTTCCGTC 57.017 42.857 0.00 0.00 0.00 4.79
635 645 4.081917 ACAAAACTGACCACAATTTTCCGT 60.082 37.500 0.00 0.00 34.04 4.69
636 646 4.429108 ACAAAACTGACCACAATTTTCCG 58.571 39.130 0.00 0.00 34.04 4.30
637 647 5.064579 CCAACAAAACTGACCACAATTTTCC 59.935 40.000 0.00 0.00 34.04 3.13
638 648 5.641636 ACCAACAAAACTGACCACAATTTTC 59.358 36.000 0.00 0.00 34.04 2.29
639 649 5.411053 CACCAACAAAACTGACCACAATTTT 59.589 36.000 0.00 0.00 36.16 1.82
640 650 4.934602 CACCAACAAAACTGACCACAATTT 59.065 37.500 0.00 0.00 0.00 1.82
641 651 4.502962 CACCAACAAAACTGACCACAATT 58.497 39.130 0.00 0.00 0.00 2.32
642 652 3.118811 CCACCAACAAAACTGACCACAAT 60.119 43.478 0.00 0.00 0.00 2.71
643 653 2.232452 CCACCAACAAAACTGACCACAA 59.768 45.455 0.00 0.00 0.00 3.33
644 654 1.821753 CCACCAACAAAACTGACCACA 59.178 47.619 0.00 0.00 0.00 4.17
645 655 1.822371 ACCACCAACAAAACTGACCAC 59.178 47.619 0.00 0.00 0.00 4.16
646 656 2.223803 ACCACCAACAAAACTGACCA 57.776 45.000 0.00 0.00 0.00 4.02
647 657 2.887337 CAACCACCAACAAAACTGACC 58.113 47.619 0.00 0.00 0.00 4.02
648 658 2.267426 GCAACCACCAACAAAACTGAC 58.733 47.619 0.00 0.00 0.00 3.51
649 659 1.895798 TGCAACCACCAACAAAACTGA 59.104 42.857 0.00 0.00 0.00 3.41
650 660 2.376808 TGCAACCACCAACAAAACTG 57.623 45.000 0.00 0.00 0.00 3.16
651 661 2.354604 CCTTGCAACCACCAACAAAACT 60.355 45.455 0.00 0.00 0.00 2.66
652 662 2.006169 CCTTGCAACCACCAACAAAAC 58.994 47.619 0.00 0.00 0.00 2.43
653 663 1.065854 CCCTTGCAACCACCAACAAAA 60.066 47.619 0.00 0.00 0.00 2.44
654 664 0.539051 CCCTTGCAACCACCAACAAA 59.461 50.000 0.00 0.00 0.00 2.83
655 665 1.965754 GCCCTTGCAACCACCAACAA 61.966 55.000 0.00 0.00 37.47 2.83
656 666 2.430610 GCCCTTGCAACCACCAACA 61.431 57.895 0.00 0.00 37.47 3.33
657 667 2.421314 GCCCTTGCAACCACCAAC 59.579 61.111 0.00 0.00 37.47 3.77
658 668 2.841988 GGCCCTTGCAACCACCAA 60.842 61.111 0.00 0.00 40.13 3.67
659 669 3.465218 ATGGCCCTTGCAACCACCA 62.465 57.895 9.27 10.19 40.13 4.17
660 670 2.604382 ATGGCCCTTGCAACCACC 60.604 61.111 9.27 4.85 40.13 4.61
661 671 1.470996 TTCATGGCCCTTGCAACCAC 61.471 55.000 9.27 0.00 40.13 4.16
662 672 1.152376 TTCATGGCCCTTGCAACCA 60.152 52.632 9.48 9.48 40.13 3.67
663 673 0.899717 TCTTCATGGCCCTTGCAACC 60.900 55.000 0.00 0.00 40.13 3.77
664 674 1.188863 ATCTTCATGGCCCTTGCAAC 58.811 50.000 0.00 0.00 40.13 4.17
665 675 1.941377 AATCTTCATGGCCCTTGCAA 58.059 45.000 0.00 0.00 40.13 4.08
666 676 1.941377 AAATCTTCATGGCCCTTGCA 58.059 45.000 0.00 0.00 40.13 4.08
667 677 3.339253 AAAAATCTTCATGGCCCTTGC 57.661 42.857 0.00 0.00 0.00 4.01
684 694 7.262048 AGAAGCACGGAAAATTTACAGAAAAA 58.738 30.769 0.00 0.00 0.00 1.94
685 695 6.801575 AGAAGCACGGAAAATTTACAGAAAA 58.198 32.000 0.00 0.00 0.00 2.29
686 696 6.385649 AGAAGCACGGAAAATTTACAGAAA 57.614 33.333 0.00 0.00 0.00 2.52
687 697 6.183360 ACAAGAAGCACGGAAAATTTACAGAA 60.183 34.615 0.00 0.00 0.00 3.02
688 698 5.298276 ACAAGAAGCACGGAAAATTTACAGA 59.702 36.000 0.00 0.00 0.00 3.41
689 699 5.519722 ACAAGAAGCACGGAAAATTTACAG 58.480 37.500 0.00 0.00 0.00 2.74
690 700 5.508200 ACAAGAAGCACGGAAAATTTACA 57.492 34.783 0.00 0.00 0.00 2.41
691 701 8.515473 AATTACAAGAAGCACGGAAAATTTAC 57.485 30.769 0.00 0.00 0.00 2.01
692 702 9.535878 AAAATTACAAGAAGCACGGAAAATTTA 57.464 25.926 0.00 0.00 0.00 1.40
693 703 8.334632 CAAAATTACAAGAAGCACGGAAAATTT 58.665 29.630 0.00 0.00 0.00 1.82
694 704 7.518211 GCAAAATTACAAGAAGCACGGAAAATT 60.518 33.333 0.00 0.00 0.00 1.82
695 705 6.073819 GCAAAATTACAAGAAGCACGGAAAAT 60.074 34.615 0.00 0.00 0.00 1.82
696 706 5.233263 GCAAAATTACAAGAAGCACGGAAAA 59.767 36.000 0.00 0.00 0.00 2.29
697 707 4.742659 GCAAAATTACAAGAAGCACGGAAA 59.257 37.500 0.00 0.00 0.00 3.13
698 708 4.037446 AGCAAAATTACAAGAAGCACGGAA 59.963 37.500 0.00 0.00 0.00 4.30
699 709 3.568007 AGCAAAATTACAAGAAGCACGGA 59.432 39.130 0.00 0.00 0.00 4.69
700 710 3.900941 AGCAAAATTACAAGAAGCACGG 58.099 40.909 0.00 0.00 0.00 4.94
701 711 4.375305 GCAAGCAAAATTACAAGAAGCACG 60.375 41.667 0.00 0.00 0.00 5.34
702 712 4.746611 AGCAAGCAAAATTACAAGAAGCAC 59.253 37.500 0.00 0.00 0.00 4.40
703 713 4.746115 CAGCAAGCAAAATTACAAGAAGCA 59.254 37.500 0.00 0.00 0.00 3.91
704 714 4.746611 ACAGCAAGCAAAATTACAAGAAGC 59.253 37.500 0.00 0.00 0.00 3.86
705 715 5.750067 ACACAGCAAGCAAAATTACAAGAAG 59.250 36.000 0.00 0.00 0.00 2.85
706 716 5.659463 ACACAGCAAGCAAAATTACAAGAA 58.341 33.333 0.00 0.00 0.00 2.52
707 717 5.261209 ACACAGCAAGCAAAATTACAAGA 57.739 34.783 0.00 0.00 0.00 3.02
708 718 5.291614 ACAACACAGCAAGCAAAATTACAAG 59.708 36.000 0.00 0.00 0.00 3.16
709 719 5.174395 ACAACACAGCAAGCAAAATTACAA 58.826 33.333 0.00 0.00 0.00 2.41
710 720 4.753233 ACAACACAGCAAGCAAAATTACA 58.247 34.783 0.00 0.00 0.00 2.41
711 721 5.043248 AGACAACACAGCAAGCAAAATTAC 58.957 37.500 0.00 0.00 0.00 1.89
712 722 5.067674 AGAGACAACACAGCAAGCAAAATTA 59.932 36.000 0.00 0.00 0.00 1.40
713 723 4.114794 GAGACAACACAGCAAGCAAAATT 58.885 39.130 0.00 0.00 0.00 1.82
714 724 3.382546 AGAGACAACACAGCAAGCAAAAT 59.617 39.130 0.00 0.00 0.00 1.82
715 725 2.754552 AGAGACAACACAGCAAGCAAAA 59.245 40.909 0.00 0.00 0.00 2.44
716 726 2.368439 AGAGACAACACAGCAAGCAAA 58.632 42.857 0.00 0.00 0.00 3.68
717 727 2.042686 AGAGACAACACAGCAAGCAA 57.957 45.000 0.00 0.00 0.00 3.91
718 728 2.042686 AAGAGACAACACAGCAAGCA 57.957 45.000 0.00 0.00 0.00 3.91
719 729 2.542411 CCAAAGAGACAACACAGCAAGC 60.542 50.000 0.00 0.00 0.00 4.01
720 730 2.945008 TCCAAAGAGACAACACAGCAAG 59.055 45.455 0.00 0.00 0.00 4.01
721 731 2.997980 TCCAAAGAGACAACACAGCAA 58.002 42.857 0.00 0.00 0.00 3.91
722 732 2.708216 TCCAAAGAGACAACACAGCA 57.292 45.000 0.00 0.00 0.00 4.41
723 733 4.276926 AGAAATCCAAAGAGACAACACAGC 59.723 41.667 0.00 0.00 0.00 4.40
724 734 5.049129 GGAGAAATCCAAAGAGACAACACAG 60.049 44.000 0.00 0.00 0.00 3.66
725 735 4.821805 GGAGAAATCCAAAGAGACAACACA 59.178 41.667 0.00 0.00 0.00 3.72
726 736 5.066593 AGGAGAAATCCAAAGAGACAACAC 58.933 41.667 0.00 0.00 0.00 3.32
727 737 5.310409 AGGAGAAATCCAAAGAGACAACA 57.690 39.130 0.00 0.00 0.00 3.33
728 738 7.162082 TCTTAGGAGAAATCCAAAGAGACAAC 58.838 38.462 0.00 0.00 0.00 3.32
729 739 7.316393 TCTTAGGAGAAATCCAAAGAGACAA 57.684 36.000 0.00 0.00 0.00 3.18
730 740 6.935240 TCTTAGGAGAAATCCAAAGAGACA 57.065 37.500 0.00 0.00 0.00 3.41
731 741 8.672815 CAAATCTTAGGAGAAATCCAAAGAGAC 58.327 37.037 0.00 0.00 35.07 3.36
732 742 7.337942 GCAAATCTTAGGAGAAATCCAAAGAGA 59.662 37.037 0.00 0.00 35.07 3.10
733 743 7.416101 GGCAAATCTTAGGAGAAATCCAAAGAG 60.416 40.741 0.00 0.00 35.07 2.85
734 744 6.378280 GGCAAATCTTAGGAGAAATCCAAAGA 59.622 38.462 0.00 0.00 35.07 2.52
735 745 6.153340 TGGCAAATCTTAGGAGAAATCCAAAG 59.847 38.462 0.00 0.00 35.07 2.77
736 746 6.015918 TGGCAAATCTTAGGAGAAATCCAAA 58.984 36.000 0.00 0.00 35.07 3.28
737 747 5.579047 TGGCAAATCTTAGGAGAAATCCAA 58.421 37.500 0.00 0.00 35.07 3.53
738 748 5.191727 TGGCAAATCTTAGGAGAAATCCA 57.808 39.130 0.00 0.00 35.07 3.41
739 749 5.595952 ACATGGCAAATCTTAGGAGAAATCC 59.404 40.000 0.00 0.00 35.07 3.01
740 750 6.705863 ACATGGCAAATCTTAGGAGAAATC 57.294 37.500 0.00 0.00 35.07 2.17
741 751 7.284034 CAGTACATGGCAAATCTTAGGAGAAAT 59.716 37.037 0.00 0.00 35.07 2.17
742 752 6.599244 CAGTACATGGCAAATCTTAGGAGAAA 59.401 38.462 0.00 0.00 35.07 2.52
743 753 6.115446 CAGTACATGGCAAATCTTAGGAGAA 58.885 40.000 0.00 0.00 35.07 2.87
744 754 5.189736 ACAGTACATGGCAAATCTTAGGAGA 59.810 40.000 0.00 0.00 36.09 3.71
745 755 5.431765 ACAGTACATGGCAAATCTTAGGAG 58.568 41.667 0.00 0.00 0.00 3.69
746 756 5.435686 ACAGTACATGGCAAATCTTAGGA 57.564 39.130 0.00 0.00 0.00 2.94
747 757 6.767902 ACATACAGTACATGGCAAATCTTAGG 59.232 38.462 0.00 0.00 0.00 2.69
748 758 7.792374 ACATACAGTACATGGCAAATCTTAG 57.208 36.000 0.00 0.00 0.00 2.18
749 759 7.609918 ACAACATACAGTACATGGCAAATCTTA 59.390 33.333 0.00 0.00 0.00 2.10
750 760 6.434028 ACAACATACAGTACATGGCAAATCTT 59.566 34.615 0.00 0.00 0.00 2.40
751 761 5.945784 ACAACATACAGTACATGGCAAATCT 59.054 36.000 0.00 0.00 0.00 2.40
752 762 6.194796 ACAACATACAGTACATGGCAAATC 57.805 37.500 0.00 0.00 0.00 2.17
753 763 7.695480 TTACAACATACAGTACATGGCAAAT 57.305 32.000 0.00 0.00 0.00 2.32
754 764 7.609918 AGATTACAACATACAGTACATGGCAAA 59.390 33.333 0.00 0.00 0.00 3.68
755 765 7.065683 CAGATTACAACATACAGTACATGGCAA 59.934 37.037 0.00 0.00 0.00 4.52
756 766 6.538381 CAGATTACAACATACAGTACATGGCA 59.462 38.462 0.00 0.00 0.00 4.92
757 767 6.511767 GCAGATTACAACATACAGTACATGGC 60.512 42.308 0.00 0.00 0.00 4.40
758 768 6.763135 AGCAGATTACAACATACAGTACATGG 59.237 38.462 0.00 0.00 0.00 3.66
759 769 7.492344 TCAGCAGATTACAACATACAGTACATG 59.508 37.037 0.00 0.00 0.00 3.21
760 770 7.555965 TCAGCAGATTACAACATACAGTACAT 58.444 34.615 0.00 0.00 0.00 2.29
761 771 6.930731 TCAGCAGATTACAACATACAGTACA 58.069 36.000 0.00 0.00 0.00 2.90
762 772 7.492669 ACATCAGCAGATTACAACATACAGTAC 59.507 37.037 0.00 0.00 30.20 2.73
763 773 7.555965 ACATCAGCAGATTACAACATACAGTA 58.444 34.615 0.00 0.00 30.20 2.74
764 774 6.409704 ACATCAGCAGATTACAACATACAGT 58.590 36.000 0.00 0.00 30.20 3.55
765 775 6.915544 ACATCAGCAGATTACAACATACAG 57.084 37.500 0.00 0.00 30.20 2.74
766 776 8.040727 ACTAACATCAGCAGATTACAACATACA 58.959 33.333 0.00 0.00 30.20 2.29
767 777 8.425577 ACTAACATCAGCAGATTACAACATAC 57.574 34.615 0.00 0.00 30.20 2.39
769 779 9.618890 ATTACTAACATCAGCAGATTACAACAT 57.381 29.630 0.00 0.00 30.20 2.71
780 790 9.845740 ACCACATTTATATTACTAACATCAGCA 57.154 29.630 0.00 0.00 0.00 4.41
816 826 9.890629 AGTTTTATTTGGCTCTTCTTTTTCTTT 57.109 25.926 0.00 0.00 0.00 2.52
818 828 9.967346 GTAGTTTTATTTGGCTCTTCTTTTTCT 57.033 29.630 0.00 0.00 0.00 2.52
819 829 8.902735 CGTAGTTTTATTTGGCTCTTCTTTTTC 58.097 33.333 0.00 0.00 0.00 2.29
820 830 7.865889 CCGTAGTTTTATTTGGCTCTTCTTTTT 59.134 33.333 0.00 0.00 0.00 1.94
821 831 7.368059 CCGTAGTTTTATTTGGCTCTTCTTTT 58.632 34.615 0.00 0.00 0.00 2.27
822 832 6.072119 CCCGTAGTTTTATTTGGCTCTTCTTT 60.072 38.462 0.00 0.00 0.00 2.52
823 833 5.414765 CCCGTAGTTTTATTTGGCTCTTCTT 59.585 40.000 0.00 0.00 0.00 2.52
824 834 4.941873 CCCGTAGTTTTATTTGGCTCTTCT 59.058 41.667 0.00 0.00 0.00 2.85
825 835 4.438336 GCCCGTAGTTTTATTTGGCTCTTC 60.438 45.833 0.00 0.00 34.61 2.87
826 836 3.442625 GCCCGTAGTTTTATTTGGCTCTT 59.557 43.478 0.00 0.00 34.61 2.85
836 846 3.318275 TGTTGCAAATGCCCGTAGTTTTA 59.682 39.130 0.00 0.00 41.18 1.52
844 854 4.739046 TTATTTTTGTTGCAAATGCCCG 57.261 36.364 0.00 0.00 41.18 6.13
847 857 8.839947 AAGAGTTTTATTTTTGTTGCAAATGC 57.160 26.923 0.00 0.00 42.50 3.56
954 965 1.827399 TTGTGGGGGAGAAGACGAGC 61.827 60.000 0.00 0.00 0.00 5.03
976 987 3.345808 GTGGAGCAGCGCGTTTGA 61.346 61.111 8.43 0.00 0.00 2.69
1283 1294 4.946157 ACAATCAGAGAGGCAGTTAATTGG 59.054 41.667 0.00 0.00 0.00 3.16
1302 1313 5.615289 GTGGCTCTCCAACTCATATACAAT 58.385 41.667 0.00 0.00 45.53 2.71
1329 1342 4.044426 GACAAAGTTCCACATTGCAGAAC 58.956 43.478 7.50 7.50 40.14 3.01
1335 1348 5.505173 AACTGAGACAAAGTTCCACATTG 57.495 39.130 0.00 0.00 32.36 2.82
1345 1358 1.939934 TCGCACCAAACTGAGACAAAG 59.060 47.619 0.00 0.00 0.00 2.77
1346 1359 2.031258 TCGCACCAAACTGAGACAAA 57.969 45.000 0.00 0.00 0.00 2.83
1369 1383 7.291885 TCAGTATAGGTCCTACTCTAGCACTAA 59.708 40.741 0.00 0.00 0.00 2.24
1373 1387 6.272558 TCATCAGTATAGGTCCTACTCTAGCA 59.727 42.308 0.00 0.00 0.00 3.49
1374 1388 6.713276 TCATCAGTATAGGTCCTACTCTAGC 58.287 44.000 0.00 0.00 0.00 3.42
1380 1394 6.726490 TTGGTTCATCAGTATAGGTCCTAC 57.274 41.667 0.00 0.00 0.00 3.18
1385 1399 5.615289 GAGCATTGGTTCATCAGTATAGGT 58.385 41.667 0.00 0.00 0.00 3.08
1386 1400 4.687948 CGAGCATTGGTTCATCAGTATAGG 59.312 45.833 0.00 0.00 0.00 2.57
1390 1404 3.885724 TCGAGCATTGGTTCATCAGTA 57.114 42.857 0.00 0.00 0.00 2.74
1401 1415 2.602933 CGGCCATTACAATCGAGCATTG 60.603 50.000 2.24 0.00 46.70 2.82
1402 1416 1.603802 CGGCCATTACAATCGAGCATT 59.396 47.619 2.24 0.00 0.00 3.56
1408 1422 1.942677 TACCACGGCCATTACAATCG 58.057 50.000 2.24 0.00 0.00 3.34
1413 1427 0.944386 CAGCATACCACGGCCATTAC 59.056 55.000 2.24 0.00 0.00 1.89
1420 1434 1.137404 GCAAAGCAGCATACCACGG 59.863 57.895 0.00 0.00 0.00 4.94
1563 1577 6.721571 TGTTTGTCCTCACGAATTCTAATC 57.278 37.500 3.52 0.00 0.00 1.75
1567 1581 6.094048 CCATAATGTTTGTCCTCACGAATTCT 59.906 38.462 3.52 0.00 0.00 2.40
1592 1606 3.315191 TGGCTGTGCTTTGTAACTCTTTC 59.685 43.478 0.00 0.00 0.00 2.62
1678 1692 1.302366 AGCACACACTGACACACATG 58.698 50.000 0.00 0.00 0.00 3.21
1702 1716 1.154073 GCTAAGCAGTGCAGCAAGC 60.154 57.895 19.20 15.47 45.96 4.01
1703 1717 0.109873 GTGCTAAGCAGTGCAGCAAG 60.110 55.000 26.37 14.58 46.18 4.01
1784 1798 5.107065 GGGCTCGGTTTCTATGAAAATATCG 60.107 44.000 0.00 0.00 0.00 2.92
1791 1805 2.184533 TCAGGGCTCGGTTTCTATGAA 58.815 47.619 0.00 0.00 0.00 2.57
1797 1811 4.157840 ACAAAATTATCAGGGCTCGGTTTC 59.842 41.667 0.00 0.00 0.00 2.78
1801 1815 3.016736 ACACAAAATTATCAGGGCTCGG 58.983 45.455 0.00 0.00 0.00 4.63
1821 1835 8.996271 TGTGAATGCATCAGATCTCATTTATAC 58.004 33.333 0.00 8.69 39.19 1.47
1834 1848 6.978343 ATTTCCATTTTGTGAATGCATCAG 57.022 33.333 0.00 0.00 39.19 2.90
1945 1959 9.067986 CACCAAGTAGAATTATCTATTTTCCCC 57.932 37.037 0.00 0.00 40.21 4.81
1953 1967 8.589701 TCACAGACACCAAGTAGAATTATCTA 57.410 34.615 0.00 0.00 37.10 1.98
1966 1980 0.109153 AGCAGCATCACAGACACCAA 59.891 50.000 0.00 0.00 0.00 3.67
2177 2193 4.919774 TGCTTGTAAAATAGGACTGGGA 57.080 40.909 0.00 0.00 0.00 4.37
2239 2256 8.857216 CAGAACTAATTTTGCTTGTCATGAATC 58.143 33.333 0.00 0.00 0.00 2.52
2344 2361 4.763073 TGATCTGCCAGTTCAGTTCATAG 58.237 43.478 1.31 0.00 37.68 2.23
2395 2412 4.334552 TGTTCTCAGCAAAATATCTGCCA 58.665 39.130 6.21 0.00 40.86 4.92
2426 2443 2.045524 TCATCAGAGAAGGGATCTGCC 58.954 52.381 0.00 0.00 43.20 4.85
2999 3019 8.947115 GTCCTGAATAAACTAAAGCTAACACAT 58.053 33.333 0.00 0.00 0.00 3.21
3029 3049 3.830178 CCGGTTACTTGAAAGGGGAAATT 59.170 43.478 0.00 0.00 0.00 1.82
3118 3138 8.915057 AATCAGGAAGACACAAATATATGGAG 57.085 34.615 0.00 0.00 0.00 3.86
3177 3208 8.648097 CACTAGCAAATACAGCGGTATTAATAG 58.352 37.037 20.34 20.77 46.79 1.73
3180 3211 5.235616 GCACTAGCAAATACAGCGGTATTAA 59.764 40.000 20.34 7.85 46.79 1.40
3188 3219 1.064654 GCAGGCACTAGCAAATACAGC 59.935 52.381 0.00 0.00 44.61 4.40
3238 3269 7.148340 CCTTTGAGAACCAGACAATAATCACTC 60.148 40.741 0.00 0.00 0.00 3.51
3265 3296 3.421844 AGTACAACCAGGGCTCAATTTC 58.578 45.455 0.00 0.00 0.00 2.17
3416 3449 5.491070 GGTAGATGCCATATGACATTGCTA 58.509 41.667 5.94 1.74 0.00 3.49
3520 3554 7.486647 AGCAAGATTAATGTTCATCATCAACC 58.513 34.615 0.00 0.00 35.48 3.77
3523 3557 9.617523 TCTTAGCAAGATTAATGTTCATCATCA 57.382 29.630 0.00 0.00 31.85 3.07
3552 3586 1.211212 CCACTGAATCTGATCTGGGCA 59.789 52.381 0.00 0.00 0.00 5.36
3565 3599 3.776158 GCACCCATTGCCACTGAA 58.224 55.556 0.00 0.00 46.63 3.02
3579 3613 4.502016 TCTTCATGAGATTCAGTGAGCAC 58.498 43.478 0.00 0.00 0.00 4.40
3627 3661 5.654603 TGTGTAGATATAGGCCGTATTGG 57.345 43.478 0.00 0.00 42.50 3.16
3710 3745 1.691196 CCACCTTCTTTGCCAGAACA 58.309 50.000 0.00 0.00 36.51 3.18
3711 3746 0.315251 GCCACCTTCTTTGCCAGAAC 59.685 55.000 0.00 0.00 36.51 3.01
3731 3766 1.296715 CCGTAGTCAGCCAAGCCTT 59.703 57.895 0.00 0.00 0.00 4.35
3740 3775 2.554893 GGGAATCTCTAGCCGTAGTCAG 59.445 54.545 0.00 0.00 0.00 3.51
3804 3842 8.261492 ACTGTTTCAACTAGAATAAGATGCAG 57.739 34.615 0.00 0.00 35.83 4.41
3832 3870 8.945193 AGGCCCATAACTCTCTTTTGTATATAA 58.055 33.333 0.00 0.00 0.00 0.98
3983 4023 3.815401 GCCGCATAGTTCATACATCCTTT 59.185 43.478 0.00 0.00 0.00 3.11
4062 4102 4.735369 TGGTCCAAAAGAGGATGCTTTTA 58.265 39.130 0.00 0.00 44.00 1.52
4063 4103 3.575805 TGGTCCAAAAGAGGATGCTTTT 58.424 40.909 0.00 0.00 46.04 2.27
4064 4104 3.243359 TGGTCCAAAAGAGGATGCTTT 57.757 42.857 0.00 0.00 40.42 3.51
4065 4105 2.978156 TGGTCCAAAAGAGGATGCTT 57.022 45.000 0.00 0.00 40.42 3.91
4104 4158 7.136822 AGTTTCAGCCAATATATCCAGTACA 57.863 36.000 0.00 0.00 0.00 2.90
4164 4218 3.243907 ACAAACCTGTACTCTCAGCTGAC 60.244 47.826 13.74 3.66 32.54 3.51
4200 4254 4.385447 TGCGAAAATAAAACAGAATGCAGC 59.615 37.500 0.00 0.00 42.53 5.25
4210 4264 6.669485 ACGATGAAGTTGCGAAAATAAAAC 57.331 33.333 0.00 0.00 0.00 2.43
4221 4275 3.764885 ATAGGCAAACGATGAAGTTGC 57.235 42.857 0.00 0.00 34.14 4.17
4231 4285 8.668353 ACAGCATATTATCATAATAGGCAAACG 58.332 33.333 27.51 17.89 40.97 3.60
4286 4340 2.656560 AGTAGCGTACAAAGCCAGAG 57.343 50.000 0.00 0.00 34.64 3.35
4302 4356 6.288294 ACAGTAGTCAGTTGCAATCAAAGTA 58.712 36.000 0.59 0.00 33.37 2.24
4323 4377 7.664082 AGACTTGAAAATCACATCACTACAG 57.336 36.000 0.00 0.00 0.00 2.74
4438 4493 5.339200 CCAAGTGGAACCCTGTAATCATAGT 60.339 44.000 0.00 0.00 37.80 2.12
4467 4522 8.049721 CCAGGAACAAGATTAGTATTTTCCTCT 58.950 37.037 0.00 0.00 39.47 3.69
4614 4669 3.354467 TCTCGGTCTTTAGGAGGAAGTC 58.646 50.000 0.00 0.00 0.00 3.01
4622 4677 7.628794 GCAGGTATATACATCTCGGTCTTTAGG 60.629 44.444 14.70 0.00 0.00 2.69
4623 4678 7.251994 GCAGGTATATACATCTCGGTCTTTAG 58.748 42.308 14.70 0.00 0.00 1.85
4624 4679 6.128090 CGCAGGTATATACATCTCGGTCTTTA 60.128 42.308 14.70 0.00 0.00 1.85
4648 4703 8.411683 ACTAATTGGTAATAAGAGTGGAGTACG 58.588 37.037 0.00 0.00 0.00 3.67
4703 4758 8.822805 AGTAATTCCTAAGTGTAATGACTTCCA 58.177 33.333 0.00 0.00 37.38 3.53
4781 4836 7.495934 GTGCAGTCAAACAGGACTAATATACAT 59.504 37.037 0.00 0.00 46.05 2.29
4888 4943 7.321745 AGAAAAGTTCTTTACAGACAACCTG 57.678 36.000 0.00 0.00 42.20 4.00
5013 5068 8.567948 CAATGCCTATTATTAACTACCAAGTGG 58.432 37.037 0.00 0.00 35.62 4.00
5089 5144 4.202264 ACCATGATCAATCGGGAGTACTTC 60.202 45.833 0.00 0.00 0.00 3.01
5092 5147 3.753294 ACCATGATCAATCGGGAGTAC 57.247 47.619 0.00 0.00 0.00 2.73
5185 5240 5.709164 AGAAGGGATGATTTCAAGACAGTTG 59.291 40.000 0.00 0.00 0.00 3.16
5192 5250 7.400599 TTCAATCAGAAGGGATGATTTCAAG 57.599 36.000 0.00 0.00 43.20 3.02
5223 5281 6.200665 TGCATCTTTCCAAAATTCGTTCTTTG 59.799 34.615 0.00 0.00 33.25 2.77
5321 5379 6.882610 TGAAAAGCTATTTCAGAAGCAAGA 57.117 33.333 15.57 0.00 41.32 3.02
5345 5403 7.262048 TCCCTGCAAAAATAATAATTCGGAAC 58.738 34.615 0.00 0.00 0.00 3.62
5373 5431 5.238650 GGAACCAAAGGTAACATATCGATGG 59.761 44.000 8.54 2.55 33.99 3.51
5378 5436 9.349713 TGATAATGGAACCAAAGGTAACATATC 57.650 33.333 0.00 9.01 33.12 1.63
5515 5573 2.093306 TCGCTCCATACAACTGTTGG 57.907 50.000 23.15 7.65 34.12 3.77
5615 5674 2.438434 CTTTCGGCCTGCGGGAAT 60.438 61.111 18.31 0.00 33.58 3.01
5620 5679 2.852495 TAGCTTCCTTTCGGCCTGCG 62.852 60.000 0.00 0.00 0.00 5.18
5621 5680 1.078426 TAGCTTCCTTTCGGCCTGC 60.078 57.895 0.00 0.00 0.00 4.85
5627 5686 3.680458 GGTCTTTGTCTAGCTTCCTTTCG 59.320 47.826 0.00 0.00 0.00 3.46
5672 5731 0.816373 GGTACTCCTGGACCGACTTC 59.184 60.000 0.00 0.00 0.00 3.01
5736 5795 6.158598 CCTTGAATATTTCACCAACAACCAG 58.841 40.000 0.00 0.00 39.87 4.00
5791 5850 3.123453 TCGCTCGAATCACAAATGAACAG 59.877 43.478 0.00 0.00 38.69 3.16
5811 5870 6.752815 GGAAGTCAAAAGTAGAGGTTCTATCG 59.247 42.308 0.00 0.00 30.76 2.92
5836 5895 1.535462 GGACAAAGAATGTGTGGACCG 59.465 52.381 0.00 0.00 36.03 4.79
5849 5908 7.975058 TGATATGTTGTTAATGCATGGACAAAG 59.025 33.333 22.40 0.00 34.20 2.77
5853 5912 6.208644 GGTGATATGTTGTTAATGCATGGAC 58.791 40.000 0.00 2.57 0.00 4.02
5855 5914 5.214417 CGGTGATATGTTGTTAATGCATGG 58.786 41.667 0.00 0.00 0.00 3.66
5876 5937 0.454620 GTCTGTCGAGTACTGCACGG 60.455 60.000 0.00 1.39 0.00 4.94
5878 5939 0.596577 TGGTCTGTCGAGTACTGCAC 59.403 55.000 0.00 0.00 0.00 4.57
5958 6019 0.322816 GCTGCTTGATGTTCCCCTCA 60.323 55.000 0.00 0.00 0.00 3.86
6074 6135 7.094677 TGCGTATATATTTTAGTAGCGAGGTCA 60.095 37.037 0.00 0.00 0.00 4.02
6078 6139 9.423427 CTAGTGCGTATATATTTTAGTAGCGAG 57.577 37.037 0.00 0.00 0.00 5.03
6079 6140 9.154847 TCTAGTGCGTATATATTTTAGTAGCGA 57.845 33.333 0.00 0.00 0.00 4.93
6080 6141 9.932699 ATCTAGTGCGTATATATTTTAGTAGCG 57.067 33.333 0.00 0.00 0.00 4.26
6099 6165 7.735917 TGTGGGGATTTAACTATCATCTAGTG 58.264 38.462 0.00 0.00 0.00 2.74
6100 6166 7.789831 TCTGTGGGGATTTAACTATCATCTAGT 59.210 37.037 0.00 0.00 0.00 2.57
6138 6204 3.433306 ACTAGGCATGGCTGTTTAACA 57.567 42.857 30.53 8.73 0.00 2.41
6160 6226 4.250464 TGCCTTGGTTCACTTAATACGAG 58.750 43.478 0.00 0.00 0.00 4.18
6161 6227 4.250464 CTGCCTTGGTTCACTTAATACGA 58.750 43.478 0.00 0.00 0.00 3.43
6162 6228 4.000988 ACTGCCTTGGTTCACTTAATACG 58.999 43.478 0.00 0.00 0.00 3.06
6183 6249 3.885901 GAGGGAGATAATTTCCTTGGCAC 59.114 47.826 0.00 0.00 35.01 5.01
6306 6372 0.980423 AGTTCTCCTTGAGCCACTCC 59.020 55.000 0.00 0.00 0.00 3.85
6410 6476 1.269723 GTCTGCAAAACCAAGGTAGGC 59.730 52.381 0.00 0.00 0.00 3.93
6449 6516 4.142491 ACGAGACTTCTCTCTTGTGCTATG 60.142 45.833 4.76 0.00 40.96 2.23
6468 6535 7.582435 AACTTGACATCTACATGTAAACGAG 57.418 36.000 7.06 8.11 43.79 4.18
6523 6590 6.533730 TGTTTATGATATTTGAGCTCGGGAT 58.466 36.000 9.64 5.44 0.00 3.85
6549 6616 9.303116 CCTCACATAATATAGTACTCTTGGAGT 57.697 37.037 0.00 5.52 45.54 3.85
6550 6617 9.303116 ACCTCACATAATATAGTACTCTTGGAG 57.697 37.037 0.00 0.00 35.52 3.86
6624 6951 2.285977 GTTTGTCAGGACGAACTTGGT 58.714 47.619 20.29 0.00 46.90 3.67
6681 7029 5.678132 TCAGGATTGCACATGAATAATCG 57.322 39.130 0.00 0.00 31.89 3.34
6706 7054 1.003839 GCACCAAGTCCATCGACCA 60.004 57.895 0.00 0.00 40.12 4.02
6748 7096 2.564504 TCACCCTGACAGAGTTCATGAG 59.435 50.000 3.32 0.00 0.00 2.90
6852 7200 5.452777 GTGTCCATTGCACTCTTCTTTAAC 58.547 41.667 0.00 0.00 34.30 2.01
6879 7227 3.681417 TGATCAAGTCTTGTGAAGATGCG 59.319 43.478 12.30 0.00 40.18 4.73
6887 7235 2.154462 GGGTGGTGATCAAGTCTTGTG 58.846 52.381 12.30 0.00 0.00 3.33
6890 7238 2.057922 ACAGGGTGGTGATCAAGTCTT 58.942 47.619 0.00 0.00 0.00 3.01
6989 7337 1.071605 GTAGAAGTGAACTGCTGCCG 58.928 55.000 0.83 0.00 32.96 5.69
6992 7340 2.992543 GCTCTGTAGAAGTGAACTGCTG 59.007 50.000 0.83 0.00 32.96 4.41
7135 7483 2.125912 CTCTTCACCGTCCTGGCG 60.126 66.667 3.95 3.95 43.94 5.69
7228 7576 2.338785 GCAGGTGGAAGGCTTGCTC 61.339 63.158 19.72 15.62 0.00 4.26
7319 7667 2.578163 TACCAGCTGCTCATGACGGC 62.578 60.000 8.66 16.65 39.82 5.68
7534 7885 3.458163 CGGGCCTTCCACGAGCTA 61.458 66.667 0.84 0.00 34.36 3.32
7584 7935 4.953868 CCAACCACGGCGTCGACA 62.954 66.667 20.03 0.00 40.11 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.