Multiple sequence alignment - TraesCS7A01G222600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G222600 chr7A 100.000 4361 0 0 1 4361 191836949 191832589 0.000000e+00 8054
1 TraesCS7A01G222600 chr7A 97.377 610 11 3 1 607 736108570 736109177 0.000000e+00 1033
2 TraesCS7A01G222600 chr7A 83.200 375 53 9 2532 2899 191697369 191696998 6.990000e-88 335
3 TraesCS7A01G222600 chr7A 87.209 258 30 3 4028 4283 13181540 13181284 1.530000e-74 291
4 TraesCS7A01G222600 chr7A 86.166 253 32 3 4033 4283 650935084 650934833 2.000000e-68 270
5 TraesCS7A01G222600 chr7A 95.238 105 5 0 503 607 220546989 220547093 2.700000e-37 167
6 TraesCS7A01G222600 chr7B 90.659 1820 115 33 2256 4036 154564064 154562261 0.000000e+00 2368
7 TraesCS7A01G222600 chr7B 87.500 1696 123 38 605 2264 154568163 154566521 0.000000e+00 1875
8 TraesCS7A01G222600 chr7B 80.810 469 68 16 2454 2907 154362631 154362170 8.980000e-92 348
9 TraesCS7A01G222600 chr7B 79.864 442 83 5 3082 3521 154361558 154361121 7.040000e-83 318
10 TraesCS7A01G222600 chr7B 86.195 297 36 2 2501 2793 154277683 154277388 2.530000e-82 316
11 TraesCS7A01G222600 chr7B 80.593 371 66 5 3082 3449 154354800 154354433 9.230000e-72 281
12 TraesCS7A01G222600 chr7B 83.784 259 31 10 4030 4284 73480372 73480623 7.290000e-58 235
13 TraesCS7A01G222600 chr7D 92.337 783 44 10 2995 3771 184863673 184862901 0.000000e+00 1099
14 TraesCS7A01G222600 chr7D 88.306 915 70 20 2009 2913 184865033 184864146 0.000000e+00 1062
15 TraesCS7A01G222600 chr7D 93.315 718 31 8 932 1643 184865735 184865029 0.000000e+00 1044
16 TraesCS7A01G222600 chr7D 87.279 283 32 1 2516 2794 184587879 184587597 1.960000e-83 320
17 TraesCS7A01G222600 chr7D 88.158 152 14 4 3886 4036 184860248 184860100 1.250000e-40 178
18 TraesCS7A01G222600 chr7D 89.610 77 8 0 2924 3000 184863765 184863689 9.980000e-17 99
19 TraesCS7A01G222600 chr6A 98.369 613 7 2 1 610 565046247 565045635 0.000000e+00 1074
20 TraesCS7A01G222600 chr6A 84.291 261 30 10 4028 4284 69203425 69203678 1.210000e-60 244
21 TraesCS7A01G222600 chr2B 97.879 613 9 2 1 609 4924066 4924678 0.000000e+00 1057
22 TraesCS7A01G222600 chr2B 84.615 260 29 9 4030 4284 89177868 89178121 9.370000e-62 248
23 TraesCS7A01G222600 chr2B 79.771 262 28 17 4028 4284 796432512 796432753 2.700000e-37 167
24 TraesCS7A01G222600 chr6B 97.872 611 10 2 1 608 558912027 558911417 0.000000e+00 1053
25 TraesCS7A01G222600 chr6B 92.739 606 39 4 1 603 94335954 94336557 0.000000e+00 870
26 TraesCS7A01G222600 chr6B 93.506 77 4 1 4286 4361 11149488 11149564 3.560000e-21 113
27 TraesCS7A01G222600 chr3A 88.462 598 47 14 14 607 472399769 472399190 0.000000e+00 702
28 TraesCS7A01G222600 chrUn 98.214 392 7 0 54 445 479724263 479724654 0.000000e+00 686
29 TraesCS7A01G222600 chrUn 94.286 70 4 0 4292 4361 281575187 281575256 1.660000e-19 108
30 TraesCS7A01G222600 chr2A 92.578 256 18 1 4029 4283 112490833 112491088 2.480000e-97 366
31 TraesCS7A01G222600 chr2A 94.805 77 4 0 4285 4361 112492162 112492238 2.130000e-23 121
32 TraesCS7A01G222600 chr1D 85.799 338 39 6 265 597 356006441 356006108 2.500000e-92 350
33 TraesCS7A01G222600 chr3D 89.313 262 20 4 4027 4283 498094703 498094961 5.440000e-84 322
34 TraesCS7A01G222600 chr5A 88.043 184 21 1 4029 4211 16841821 16842004 2.640000e-52 217
35 TraesCS7A01G222600 chr5A 93.506 77 5 0 4285 4361 16842499 16842575 9.910000e-22 115
36 TraesCS7A01G222600 chr3B 96.226 106 4 0 503 608 603624836 603624731 1.610000e-39 174
37 TraesCS7A01G222600 chr5B 83.422 187 26 4 4027 4210 696484034 696484218 7.500000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G222600 chr7A 191832589 191836949 4360 True 8054.0 8054 100.0000 1 4361 1 chr7A.!!$R3 4360
1 TraesCS7A01G222600 chr7A 736108570 736109177 607 False 1033.0 1033 97.3770 1 607 1 chr7A.!!$F2 606
2 TraesCS7A01G222600 chr7B 154562261 154568163 5902 True 2121.5 2368 89.0795 605 4036 2 chr7B.!!$R4 3431
3 TraesCS7A01G222600 chr7B 154361121 154362631 1510 True 333.0 348 80.3370 2454 3521 2 chr7B.!!$R3 1067
4 TraesCS7A01G222600 chr7D 184860100 184865735 5635 True 696.4 1099 90.3452 932 4036 5 chr7D.!!$R2 3104
5 TraesCS7A01G222600 chr6A 565045635 565046247 612 True 1074.0 1074 98.3690 1 610 1 chr6A.!!$R1 609
6 TraesCS7A01G222600 chr2B 4924066 4924678 612 False 1057.0 1057 97.8790 1 609 1 chr2B.!!$F1 608
7 TraesCS7A01G222600 chr6B 558911417 558912027 610 True 1053.0 1053 97.8720 1 608 1 chr6B.!!$R1 607
8 TraesCS7A01G222600 chr6B 94335954 94336557 603 False 870.0 870 92.7390 1 603 1 chr6B.!!$F2 602
9 TraesCS7A01G222600 chr3A 472399190 472399769 579 True 702.0 702 88.4620 14 607 1 chr3A.!!$R1 593
10 TraesCS7A01G222600 chr2A 112490833 112492238 1405 False 243.5 366 93.6915 4029 4361 2 chr2A.!!$F1 332

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 839 0.108329 CGGACCGACAGCCAAACTAT 60.108 55.0 8.64 0.0 0.0 2.12 F
827 840 1.653151 GGACCGACAGCCAAACTATC 58.347 55.0 0.00 0.0 0.0 2.08 F
1575 1591 2.082140 ACATCTGCCGTATCCAGGTA 57.918 50.0 0.00 0.0 0.0 3.08 F
2234 2274 0.102120 TTTTTGCAAGACAGGCCACG 59.898 50.0 5.01 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 1704 0.034337 TCGGCACAAGGACTGTAACC 59.966 55.000 0.00 0.00 36.10 2.85 R
1771 1800 0.803117 GGGCTTGACGGTTTTCTAGC 59.197 55.000 0.00 0.00 41.83 3.42 R
2530 5043 1.005215 AGGCTCCTGCAAATTAGCACT 59.995 47.619 10.32 4.08 40.11 4.40 R
4187 9769 0.107654 GACAGTGGGCCCTATGTCAC 60.108 60.000 35.87 22.47 41.32 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.791069 GGTCGCCACCCTCCCCTA 62.791 72.222 0.00 0.00 36.54 3.53
204 205 1.228063 CCACTGCTGCACCTCAAGT 60.228 57.895 0.00 0.00 0.00 3.16
487 488 7.094377 ACCAGTCATGTATGTACAAAACAATCC 60.094 37.037 15.80 8.34 42.70 3.01
624 630 7.450074 TGTTAGATTATGTTTGGTCTGTCTGT 58.550 34.615 0.00 0.00 0.00 3.41
625 631 7.936847 TGTTAGATTATGTTTGGTCTGTCTGTT 59.063 33.333 0.00 0.00 0.00 3.16
626 632 8.443937 GTTAGATTATGTTTGGTCTGTCTGTTC 58.556 37.037 0.00 0.00 0.00 3.18
627 633 6.773638 AGATTATGTTTGGTCTGTCTGTTCT 58.226 36.000 0.00 0.00 0.00 3.01
629 635 6.618287 TTATGTTTGGTCTGTCTGTTCTTG 57.382 37.500 0.00 0.00 0.00 3.02
631 637 3.938963 TGTTTGGTCTGTCTGTTCTTGTC 59.061 43.478 0.00 0.00 0.00 3.18
632 638 3.904800 TTGGTCTGTCTGTTCTTGTCA 57.095 42.857 0.00 0.00 0.00 3.58
633 639 3.179443 TGGTCTGTCTGTTCTTGTCAC 57.821 47.619 0.00 0.00 0.00 3.67
635 641 3.958147 TGGTCTGTCTGTTCTTGTCACTA 59.042 43.478 0.00 0.00 0.00 2.74
636 642 4.588951 TGGTCTGTCTGTTCTTGTCACTAT 59.411 41.667 0.00 0.00 0.00 2.12
637 643 5.773176 TGGTCTGTCTGTTCTTGTCACTATA 59.227 40.000 0.00 0.00 0.00 1.31
638 644 6.094061 GGTCTGTCTGTTCTTGTCACTATAC 58.906 44.000 0.00 0.00 0.00 1.47
639 645 6.071840 GGTCTGTCTGTTCTTGTCACTATACT 60.072 42.308 0.00 0.00 0.00 2.12
640 646 7.120873 GGTCTGTCTGTTCTTGTCACTATACTA 59.879 40.741 0.00 0.00 0.00 1.82
641 647 8.679100 GTCTGTCTGTTCTTGTCACTATACTAT 58.321 37.037 0.00 0.00 0.00 2.12
643 649 8.575649 TGTCTGTTCTTGTCACTATACTATCA 57.424 34.615 0.00 0.00 0.00 2.15
644 650 9.190317 TGTCTGTTCTTGTCACTATACTATCAT 57.810 33.333 0.00 0.00 0.00 2.45
662 672 6.933521 ACTATCATAATACTCTGCCAAAGCTG 59.066 38.462 0.00 0.00 40.80 4.24
679 689 2.821969 AGCTGTATGACCAAAAAGCTGG 59.178 45.455 0.00 0.00 39.43 4.85
703 713 2.703416 CTTCACAGCTGTCCATTGCTA 58.297 47.619 18.64 0.00 37.81 3.49
726 736 5.904362 ATGAGGGCAGTTAAGAATTTCAC 57.096 39.130 0.00 0.00 0.00 3.18
767 780 3.492102 ACACAACTGGCAGAGTATTGT 57.508 42.857 23.66 17.72 33.09 2.71
769 782 2.413112 CACAACTGGCAGAGTATTGTCG 59.587 50.000 23.66 11.43 33.09 4.35
780 793 6.856938 GGCAGAGTATTGTCGTACTACTAATG 59.143 42.308 0.00 0.85 35.14 1.90
806 819 4.590647 TGTGCAAAGGATTACCAAAATCCA 59.409 37.500 16.83 0.00 46.70 3.41
811 824 3.617284 AGGATTACCAAAATCCACGGAC 58.383 45.455 16.83 0.00 46.70 4.79
826 839 0.108329 CGGACCGACAGCCAAACTAT 60.108 55.000 8.64 0.00 0.00 2.12
827 840 1.653151 GGACCGACAGCCAAACTATC 58.347 55.000 0.00 0.00 0.00 2.08
838 851 3.031812 GCCAAACTATCGTACGTCGTAG 58.968 50.000 16.05 16.80 40.80 3.51
839 852 3.242413 GCCAAACTATCGTACGTCGTAGA 60.242 47.826 22.26 6.22 40.80 2.59
840 853 4.512657 CCAAACTATCGTACGTCGTAGAG 58.487 47.826 22.26 11.65 36.95 2.43
841 854 3.850657 AACTATCGTACGTCGTAGAGC 57.149 47.619 22.26 0.00 36.95 4.09
842 855 2.814269 ACTATCGTACGTCGTAGAGCA 58.186 47.619 22.26 1.96 36.95 4.26
843 856 3.190079 ACTATCGTACGTCGTAGAGCAA 58.810 45.455 22.26 1.33 36.95 3.91
844 857 3.806521 ACTATCGTACGTCGTAGAGCAAT 59.193 43.478 22.26 7.68 36.95 3.56
845 858 4.984785 ACTATCGTACGTCGTAGAGCAATA 59.015 41.667 22.26 8.28 36.95 1.90
846 859 4.801147 ATCGTACGTCGTAGAGCAATAA 57.199 40.909 16.05 0.00 36.95 1.40
847 860 4.801147 TCGTACGTCGTAGAGCAATAAT 57.199 40.909 16.05 0.00 36.95 1.28
848 861 4.521010 TCGTACGTCGTAGAGCAATAATG 58.479 43.478 16.05 0.00 36.95 1.90
849 862 3.117507 CGTACGTCGTAGAGCAATAATGC 59.882 47.826 7.22 0.00 42.85 3.56
861 874 2.704037 CAATAATGCTACACGTTGGCG 58.296 47.619 0.00 0.00 44.93 5.69
905 918 2.748058 ATTCCAAACCGCACCTCGCT 62.748 55.000 0.00 0.00 39.08 4.93
908 921 4.295119 AAACCGCACCTCGCTCGT 62.295 61.111 0.00 0.00 39.08 4.18
995 1011 4.072088 CCCGTCGCGTGCTTTCAC 62.072 66.667 5.77 0.00 39.78 3.18
996 1012 3.334751 CCGTCGCGTGCTTTCACA 61.335 61.111 5.77 0.00 43.28 3.58
1007 1023 3.242641 CGTGCTTTCACATCCATGATCAG 60.243 47.826 0.09 0.00 43.28 2.90
1575 1591 2.082140 ACATCTGCCGTATCCAGGTA 57.918 50.000 0.00 0.00 0.00 3.08
1576 1592 2.609747 ACATCTGCCGTATCCAGGTAT 58.390 47.619 0.00 0.00 0.00 2.73
1578 1594 2.082140 TCTGCCGTATCCAGGTATGT 57.918 50.000 0.00 0.00 0.00 2.29
1579 1595 3.232720 TCTGCCGTATCCAGGTATGTA 57.767 47.619 0.00 0.00 0.00 2.29
1593 1609 6.728632 TCCAGGTATGTATAGATGCCATGTAA 59.271 38.462 17.48 3.53 30.77 2.41
1596 1612 7.761704 CAGGTATGTATAGATGCCATGTAAGAC 59.238 40.741 17.48 0.00 30.77 3.01
1598 1614 7.976734 GGTATGTATAGATGCCATGTAAGACTC 59.023 40.741 11.51 0.00 0.00 3.36
1599 1615 7.789202 ATGTATAGATGCCATGTAAGACTCT 57.211 36.000 0.00 0.00 0.00 3.24
1600 1616 7.220741 TGTATAGATGCCATGTAAGACTCTC 57.779 40.000 0.00 0.00 0.00 3.20
1601 1617 3.724508 AGATGCCATGTAAGACTCTCG 57.275 47.619 0.00 0.00 0.00 4.04
1714 1743 3.809832 CGACCAAACCTGAAGCCATATAG 59.190 47.826 0.00 0.00 0.00 1.31
1715 1744 3.555966 ACCAAACCTGAAGCCATATAGC 58.444 45.455 0.00 0.00 0.00 2.97
1716 1745 3.053693 ACCAAACCTGAAGCCATATAGCA 60.054 43.478 0.00 0.00 34.23 3.49
1717 1746 3.316308 CCAAACCTGAAGCCATATAGCAC 59.684 47.826 0.00 0.00 34.23 4.40
1718 1747 4.202441 CAAACCTGAAGCCATATAGCACT 58.798 43.478 0.00 0.00 34.23 4.40
1719 1748 4.510167 AACCTGAAGCCATATAGCACTT 57.490 40.909 0.00 0.00 34.23 3.16
1720 1749 4.078639 ACCTGAAGCCATATAGCACTTC 57.921 45.455 0.00 0.00 39.16 3.01
1755 1784 9.620660 GTTTGTTAACAATTGGGTCTATTACAG 57.379 33.333 21.17 0.00 35.55 2.74
1784 1814 6.608610 ACATTTTACATGCTAGAAAACCGTC 58.391 36.000 0.00 0.00 0.00 4.79
1787 1817 5.856126 TTACATGCTAGAAAACCGTCAAG 57.144 39.130 0.00 0.00 0.00 3.02
1788 1818 2.484264 ACATGCTAGAAAACCGTCAAGC 59.516 45.455 0.00 0.00 0.00 4.01
1871 1909 4.057432 CGGTTTGCAAGGTTGAAAATCAT 58.943 39.130 7.13 0.00 36.76 2.45
1931 1969 5.085636 TCAAAGGAAATGTTTCGTGTACG 57.914 39.130 0.00 0.00 38.06 3.67
1957 1995 5.689383 ATTCATAACGATGTAATGCACCC 57.311 39.130 0.00 0.00 34.41 4.61
1962 2000 2.297701 ACGATGTAATGCACCCAATCC 58.702 47.619 0.00 0.00 0.00 3.01
2001 2039 3.459232 TCCCTATGATGCAAGAAGACG 57.541 47.619 0.00 0.00 0.00 4.18
2009 2047 3.128764 TGATGCAAGAAGACGACGTCTAT 59.871 43.478 29.41 18.18 42.59 1.98
2012 2050 5.244785 TGCAAGAAGACGACGTCTATTAT 57.755 39.130 29.41 14.99 42.59 1.28
2014 2052 6.788243 TGCAAGAAGACGACGTCTATTATAA 58.212 36.000 29.41 12.59 42.59 0.98
2015 2053 7.252708 TGCAAGAAGACGACGTCTATTATAAA 58.747 34.615 29.41 11.18 42.59 1.40
2075 2113 9.573133 GGATTCAATTCAACATGTTAAGTTAGG 57.427 33.333 11.53 0.00 0.00 2.69
2116 2154 6.248569 TCTCTGTTCCTCTGTAAGGTTTTT 57.751 37.500 0.00 0.00 46.32 1.94
2117 2155 6.289064 TCTCTGTTCCTCTGTAAGGTTTTTC 58.711 40.000 0.00 0.00 46.32 2.29
2119 2157 6.289064 TCTGTTCCTCTGTAAGGTTTTTCTC 58.711 40.000 0.00 0.00 46.32 2.87
2123 2161 6.347859 TCCTCTGTAAGGTTTTTCTCTCTC 57.652 41.667 0.00 0.00 46.32 3.20
2125 2163 6.209788 TCCTCTGTAAGGTTTTTCTCTCTCTC 59.790 42.308 0.00 0.00 46.32 3.20
2127 2165 7.256154 CCTCTGTAAGGTTTTTCTCTCTCTCTT 60.256 40.741 0.00 0.00 40.67 2.85
2128 2166 8.024145 TCTGTAAGGTTTTTCTCTCTCTCTTT 57.976 34.615 0.00 0.00 0.00 2.52
2130 2168 9.114952 CTGTAAGGTTTTTCTCTCTCTCTTTTT 57.885 33.333 0.00 0.00 0.00 1.94
2179 2218 7.225523 TGTTTAGAACGTAGAGTCAAACAAC 57.774 36.000 10.51 0.00 33.02 3.32
2216 2255 6.985059 GGACAAACTATAAAGACCTAGCGATT 59.015 38.462 0.00 0.00 0.00 3.34
2234 2274 0.102120 TTTTTGCAAGACAGGCCACG 59.898 50.000 5.01 0.00 0.00 4.94
2292 4797 1.616159 AGTTTGGTTCCAATCACCGG 58.384 50.000 0.00 0.00 37.07 5.28
2329 4835 5.772521 CATTGGTTCTCAAGTTAGGTTTGG 58.227 41.667 0.00 0.00 38.95 3.28
2349 4855 3.178046 GGTTATTTTGTTCCCCACCCAT 58.822 45.455 0.00 0.00 0.00 4.00
2360 4866 2.057922 CCCCACCCATCTACTATTGCT 58.942 52.381 0.00 0.00 0.00 3.91
2390 4896 2.586258 TGATGCTCCTCTAGTTTCGC 57.414 50.000 0.00 0.00 0.00 4.70
2475 4983 5.451937 GGCCATAACTAAAGCCATTTCCTTC 60.452 44.000 0.00 0.00 45.07 3.46
2476 4984 5.451937 GCCATAACTAAAGCCATTTCCTTCC 60.452 44.000 0.00 0.00 0.00 3.46
2477 4985 5.656416 CCATAACTAAAGCCATTTCCTTCCA 59.344 40.000 0.00 0.00 0.00 3.53
2478 4986 6.183360 CCATAACTAAAGCCATTTCCTTCCAG 60.183 42.308 0.00 0.00 0.00 3.86
2479 4987 4.388577 ACTAAAGCCATTTCCTTCCAGT 57.611 40.909 0.00 0.00 0.00 4.00
2481 4989 4.767409 ACTAAAGCCATTTCCTTCCAGTTC 59.233 41.667 0.00 0.00 0.00 3.01
2489 5002 5.106157 CCATTTCCTTCCAGTTCACATACAC 60.106 44.000 0.00 0.00 0.00 2.90
2496 5009 4.883083 TCCAGTTCACATACACTGTTCTC 58.117 43.478 0.00 0.00 39.09 2.87
2499 5012 4.745125 CAGTTCACATACACTGTTCTCGTT 59.255 41.667 0.00 0.00 35.29 3.85
2512 5025 3.242706 TGTTCTCGTTGTTGCATGTGAAG 60.243 43.478 0.00 0.00 0.00 3.02
2515 5028 3.625313 TCTCGTTGTTGCATGTGAAGAAA 59.375 39.130 0.00 0.00 0.00 2.52
2530 5043 6.054941 TGTGAAGAAAAACATGAGTGAGCTA 58.945 36.000 0.00 0.00 0.00 3.32
2637 5154 0.402121 GAACTCCTGGCCCTCTGTTT 59.598 55.000 0.00 0.00 0.00 2.83
2652 5169 0.393808 TGTTTATCCCCAAGAGCGGC 60.394 55.000 0.00 0.00 0.00 6.53
2712 5229 1.639722 TCACGGAGGAGGACATCAAA 58.360 50.000 0.00 0.00 0.00 2.69
2748 5265 2.945668 GTTTGACAAGTCTGGCTTCACT 59.054 45.455 0.00 0.00 34.69 3.41
2753 5270 2.360475 GTCTGGCTTCACTGGGGC 60.360 66.667 0.00 0.00 0.00 5.80
2798 5315 8.874816 CCTGAACAAGTAATTAAGCTACTTCTC 58.125 37.037 8.94 9.24 37.47 2.87
2853 5376 7.652105 TCCGATGATTAGTGTGCTTTAACTATC 59.348 37.037 0.00 0.00 0.00 2.08
2936 5841 7.880160 TCCATATTGAATTTACCTGTCCAAG 57.120 36.000 0.00 0.00 0.00 3.61
2941 5846 6.877611 TTGAATTTACCTGTCCAAGACTTC 57.122 37.500 0.00 0.00 33.15 3.01
2964 5869 4.980434 CAGTTTTCCTGTTCTTCAGCAATG 59.020 41.667 0.00 0.00 42.38 2.82
3028 6052 9.707957 TGTAATTACCATAGATTTCCCAAACAT 57.292 29.630 13.01 0.00 0.00 2.71
3061 6094 4.646945 TGTAGAGAAGGATTGCTAGGACAG 59.353 45.833 0.00 0.00 0.00 3.51
3062 6095 3.718723 AGAGAAGGATTGCTAGGACAGT 58.281 45.455 0.00 0.00 0.00 3.55
3378 6417 5.209818 ACTGAAATGAGGAGTAACGAACA 57.790 39.130 0.00 0.00 0.00 3.18
3539 6580 2.046314 TGCCGCTACCCTGCTTTC 60.046 61.111 0.00 0.00 0.00 2.62
3650 6693 4.081586 TGTGCCACTACCGTCATTATGTTA 60.082 41.667 0.00 0.00 0.00 2.41
3652 6695 5.050363 GTGCCACTACCGTCATTATGTTATG 60.050 44.000 0.00 0.00 0.00 1.90
3679 6722 4.678509 TCATTATTTCTGCACGTTCCAC 57.321 40.909 0.00 0.00 0.00 4.02
3680 6723 4.068599 TCATTATTTCTGCACGTTCCACA 58.931 39.130 0.00 0.00 0.00 4.17
3699 6743 8.429641 GTTCCACAGATATTGACCTATTTAGGA 58.570 37.037 10.61 0.00 46.63 2.94
3773 8091 2.745968 ACTCCCAAGCTTTTTGGAACA 58.254 42.857 4.39 0.00 42.06 3.18
3815 8133 6.430864 TGATTTATCAAAGCCCTCACCATTA 58.569 36.000 0.00 0.00 33.08 1.90
3856 8174 5.494390 TGAGATACGGTAGGCTATACTGA 57.506 43.478 13.29 1.32 0.00 3.41
3897 9478 8.946085 TCTACCATGTAAATTGTAAAGCAAGAG 58.054 33.333 0.00 0.00 40.86 2.85
3936 9517 2.151202 CACCACTTGACGCATAAAGGT 58.849 47.619 0.00 0.00 0.00 3.50
3946 9527 4.142315 TGACGCATAAAGGTGTAGAGGTAC 60.142 45.833 0.00 0.00 0.00 3.34
4003 9584 5.401550 CATGTTAAAACCACATCTGCGATT 58.598 37.500 0.00 0.00 32.25 3.34
4012 9593 5.718146 ACCACATCTGCGATTGATCTATAG 58.282 41.667 0.00 0.00 0.00 1.31
4017 9598 4.082125 TCTGCGATTGATCTATAGGCTCA 58.918 43.478 0.00 1.10 0.00 4.26
4047 9628 5.902681 TCTAAGAGTCAATTACACCATCGG 58.097 41.667 0.00 0.00 0.00 4.18
4081 9663 8.843262 ACTTGGTGTAAAAATCACTTTAGTACC 58.157 33.333 0.00 0.00 36.25 3.34
4105 9687 6.420604 CCAAAACTTGTGGTGTACATTGAATC 59.579 38.462 0.00 0.00 39.48 2.52
4107 9689 3.751175 ACTTGTGGTGTACATTGAATCGG 59.249 43.478 0.00 0.00 39.48 4.18
4110 9692 3.071479 GTGGTGTACATTGAATCGGTGT 58.929 45.455 0.00 0.00 0.00 4.16
4121 9703 3.811083 TGAATCGGTGTAACAACTTGGT 58.189 40.909 0.00 0.00 39.98 3.67
4125 9707 3.876341 TCGGTGTAACAACTTGGTTTCT 58.124 40.909 0.00 0.00 39.98 2.52
4128 9710 5.879223 TCGGTGTAACAACTTGGTTTCTTTA 59.121 36.000 0.00 0.00 39.98 1.85
4160 9742 5.197549 CGGTGCAAATCATAGTTGAATACG 58.802 41.667 0.00 0.00 34.96 3.06
4166 9748 6.432936 CAAATCATAGTTGAATACGCTGCAT 58.567 36.000 0.00 0.00 34.96 3.96
4172 9754 0.107752 TGAATACGCTGCATGGCTGA 60.108 50.000 0.00 0.00 0.00 4.26
4173 9755 0.305922 GAATACGCTGCATGGCTGAC 59.694 55.000 0.00 0.00 0.00 3.51
4185 9767 4.643795 GCTGACTAGGCATGCCAA 57.356 55.556 37.18 16.35 38.92 4.52
4187 9769 1.709147 GCTGACTAGGCATGCCAACG 61.709 60.000 37.18 25.41 38.92 4.10
4201 9783 1.298340 CAACGTGACATAGGGCCCA 59.702 57.895 27.56 10.89 0.00 5.36
4261 9843 5.567138 ATTTGCGAAAATACCCTCAGAAG 57.433 39.130 0.00 0.00 0.00 2.85
4265 9847 4.454504 TGCGAAAATACCCTCAGAAGTTTC 59.545 41.667 0.00 0.00 0.00 2.78
4283 9865 0.034896 TCCTTGTCACGAGAAAGCCC 59.965 55.000 0.00 0.00 0.00 5.19
4287 10941 1.301479 GTCACGAGAAAGCCCGGTT 60.301 57.895 0.00 0.00 0.00 4.44
4293 10947 2.745821 ACGAGAAAGCCCGGTTTTTATC 59.254 45.455 0.00 6.59 0.00 1.75
4294 10948 3.007635 CGAGAAAGCCCGGTTTTTATCT 58.992 45.455 15.93 6.30 0.00 1.98
4299 10953 1.353022 AGCCCGGTTTTTATCTGGTCA 59.647 47.619 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.973281 CGCCACCATTGCAAGGAGT 60.973 57.895 13.66 6.04 0.00 3.85
163 164 2.343758 GCAGTTCTCGGTCCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
487 488 2.666862 TGCGCCTGGTAAACCGTG 60.667 61.111 4.18 0.00 39.43 4.94
635 641 8.820831 AGCTTTGGCAGAGTATTATGATAGTAT 58.179 33.333 6.91 0.00 41.70 2.12
636 642 8.090831 CAGCTTTGGCAGAGTATTATGATAGTA 58.909 37.037 6.91 0.00 41.70 1.82
637 643 6.933521 CAGCTTTGGCAGAGTATTATGATAGT 59.066 38.462 6.91 0.00 41.70 2.12
638 644 6.933521 ACAGCTTTGGCAGAGTATTATGATAG 59.066 38.462 6.91 0.00 41.70 2.08
639 645 6.830912 ACAGCTTTGGCAGAGTATTATGATA 58.169 36.000 6.91 0.00 41.70 2.15
640 646 5.688807 ACAGCTTTGGCAGAGTATTATGAT 58.311 37.500 6.91 0.00 41.70 2.45
641 647 5.102953 ACAGCTTTGGCAGAGTATTATGA 57.897 39.130 6.91 0.00 41.70 2.15
643 649 6.708054 GTCATACAGCTTTGGCAGAGTATTAT 59.292 38.462 6.91 0.00 41.70 1.28
644 650 6.049149 GTCATACAGCTTTGGCAGAGTATTA 58.951 40.000 6.91 0.00 41.70 0.98
645 651 4.878397 GTCATACAGCTTTGGCAGAGTATT 59.122 41.667 6.91 0.00 41.70 1.89
646 652 4.446371 GTCATACAGCTTTGGCAGAGTAT 58.554 43.478 6.91 1.06 41.70 2.12
647 653 3.369471 GGTCATACAGCTTTGGCAGAGTA 60.369 47.826 6.91 0.00 41.70 2.59
648 654 2.616510 GGTCATACAGCTTTGGCAGAGT 60.617 50.000 6.91 0.00 41.70 3.24
649 655 2.012673 GGTCATACAGCTTTGGCAGAG 58.987 52.381 0.00 0.00 41.70 3.35
653 663 3.658757 TTTTGGTCATACAGCTTTGGC 57.341 42.857 0.00 0.00 39.06 4.52
662 672 2.352715 GCACCCAGCTTTTTGGTCATAC 60.353 50.000 0.00 0.00 41.15 2.39
679 689 0.607489 ATGGACAGCTGTGAAGCACC 60.607 55.000 27.27 18.34 37.25 5.01
703 713 5.774690 TGTGAAATTCTTAACTGCCCTCATT 59.225 36.000 0.00 0.00 0.00 2.57
726 736 6.150307 TGTGTTGTGCATTTTATAGTAGGGTG 59.850 38.462 0.00 0.00 0.00 4.61
780 793 3.591196 TTGGTAATCCTTTGCACATGC 57.409 42.857 0.00 0.00 36.71 4.06
806 819 1.466025 TAGTTTGGCTGTCGGTCCGT 61.466 55.000 11.88 0.00 0.00 4.69
826 839 4.521010 CATTATTGCTCTACGACGTACGA 58.479 43.478 24.41 5.44 45.77 3.43
827 840 3.117507 GCATTATTGCTCTACGACGTACG 59.882 47.826 15.01 15.01 45.77 3.67
840 853 3.099391 CGCCAACGTGTAGCATTATTGC 61.099 50.000 1.25 1.25 41.11 3.56
841 854 2.704037 CGCCAACGTGTAGCATTATTG 58.296 47.619 0.00 0.00 33.53 1.90
855 868 4.084888 GCACCGCTGTACGCCAAC 62.085 66.667 4.51 0.00 41.76 3.77
859 872 3.864686 CATGGCACCGCTGTACGC 61.865 66.667 0.00 0.40 41.76 4.42
860 873 3.864686 GCATGGCACCGCTGTACG 61.865 66.667 3.59 0.00 43.15 3.67
861 874 3.864686 CGCATGGCACCGCTGTAC 61.865 66.667 8.86 0.00 0.00 2.90
870 883 1.643868 GAATCGTGTTCCGCATGGCA 61.644 55.000 0.00 0.00 34.91 4.92
908 921 4.329545 GTTGTGAGGGCGGCCTGA 62.330 66.667 38.01 26.97 0.00 3.86
913 926 0.742505 TATAGTCGTTGTGAGGGCGG 59.257 55.000 0.00 0.00 0.00 6.13
915 928 1.202498 GGGTATAGTCGTTGTGAGGGC 60.202 57.143 0.00 0.00 0.00 5.19
921 934 0.458669 CGCAGGGGTATAGTCGTTGT 59.541 55.000 0.00 0.00 0.00 3.32
949 962 0.245539 ACTATAAGGTGTGCGCGTGT 59.754 50.000 8.43 0.00 0.00 4.49
957 970 0.458669 CGGACCGCACTATAAGGTGT 59.541 55.000 0.00 0.00 38.57 4.16
958 971 0.458669 ACGGACCGCACTATAAGGTG 59.541 55.000 15.39 0.00 38.57 4.00
959 972 0.743097 GACGGACCGCACTATAAGGT 59.257 55.000 15.39 0.00 41.63 3.50
960 973 0.031721 GGACGGACCGCACTATAAGG 59.968 60.000 15.39 0.00 0.00 2.69
961 974 0.031721 GGGACGGACCGCACTATAAG 59.968 60.000 15.39 0.00 40.11 1.73
988 1004 2.621998 CCCTGATCATGGATGTGAAAGC 59.378 50.000 11.36 0.00 0.00 3.51
991 1007 1.133699 GGCCCTGATCATGGATGTGAA 60.134 52.381 20.12 0.00 0.00 3.18
992 1008 0.475475 GGCCCTGATCATGGATGTGA 59.525 55.000 20.12 0.00 0.00 3.58
995 1011 0.894184 GCAGGCCCTGATCATGGATG 60.894 60.000 16.85 16.84 32.44 3.51
996 1012 1.459369 GCAGGCCCTGATCATGGAT 59.541 57.895 16.85 5.40 32.44 3.41
1353 1369 3.125829 GCGAATCAATCAGAGCAACAAGA 59.874 43.478 0.00 0.00 0.00 3.02
1485 1501 3.787001 CTCCGGGGACTGAAGGGC 61.787 72.222 0.00 0.00 36.31 5.19
1575 1591 7.362487 CGAGAGTCTTACATGGCATCTATACAT 60.362 40.741 0.00 0.00 0.00 2.29
1576 1592 6.072452 CGAGAGTCTTACATGGCATCTATACA 60.072 42.308 0.00 0.00 0.00 2.29
1578 1594 6.238648 TCGAGAGTCTTACATGGCATCTATA 58.761 40.000 0.00 0.00 0.00 1.31
1579 1595 5.073428 TCGAGAGTCTTACATGGCATCTAT 58.927 41.667 0.00 0.00 0.00 1.98
1600 1616 0.034756 TGGTTATCCATCGGGCATCG 59.965 55.000 0.00 0.00 39.03 3.84
1648 1677 6.257630 GTGGTAGCACAACAATGAACAATTTT 59.742 34.615 19.87 0.00 0.00 1.82
1650 1679 5.163468 TGTGGTAGCACAACAATGAACAATT 60.163 36.000 24.69 0.00 31.35 2.32
1651 1680 4.340666 TGTGGTAGCACAACAATGAACAAT 59.659 37.500 24.69 0.00 31.35 2.71
1654 1683 3.304659 CCTGTGGTAGCACAACAATGAAC 60.305 47.826 26.38 0.00 34.35 3.18
1655 1684 2.884012 CCTGTGGTAGCACAACAATGAA 59.116 45.455 26.38 3.45 34.35 2.57
1657 1686 2.229792 ACCTGTGGTAGCACAACAATG 58.770 47.619 26.38 15.16 32.11 2.82
1658 1687 2.656947 ACCTGTGGTAGCACAACAAT 57.343 45.000 26.38 10.90 32.11 2.71
1659 1688 2.428544 AACCTGTGGTAGCACAACAA 57.571 45.000 26.38 5.96 33.12 2.83
1666 1695 1.900486 AGGACTGTAACCTGTGGTAGC 59.100 52.381 0.00 0.00 33.12 3.58
1669 1698 2.124411 ACAAGGACTGTAACCTGTGGT 58.876 47.619 0.00 0.00 36.10 4.16
1674 1703 0.034896 CGGCACAAGGACTGTAACCT 59.965 55.000 0.00 0.00 36.10 3.50
1675 1704 0.034337 TCGGCACAAGGACTGTAACC 59.966 55.000 0.00 0.00 36.10 2.85
1717 1746 6.430451 ATTGTTAACAAACTTCTGCGAGAAG 58.570 36.000 23.97 18.52 45.48 2.85
1718 1747 5.804692 TTGTTAACAAACTTCTGCGAGAA 57.195 34.783 18.54 0.00 32.11 2.87
1719 1748 6.198687 CAATTGTTAACAAACTTCTGCGAGA 58.801 36.000 23.97 0.00 39.55 4.04
1720 1749 5.399301 CCAATTGTTAACAAACTTCTGCGAG 59.601 40.000 23.97 3.47 39.55 5.03
1765 1794 4.153475 GCTTGACGGTTTTCTAGCATGTAA 59.847 41.667 0.00 0.00 42.06 2.41
1766 1795 3.682858 GCTTGACGGTTTTCTAGCATGTA 59.317 43.478 0.00 0.00 42.06 2.29
1768 1797 2.159517 GGCTTGACGGTTTTCTAGCATG 60.160 50.000 8.85 0.00 43.62 4.06
1769 1798 2.084546 GGCTTGACGGTTTTCTAGCAT 58.915 47.619 8.85 0.00 43.62 3.79
1770 1799 1.519408 GGCTTGACGGTTTTCTAGCA 58.481 50.000 8.85 0.00 43.62 3.49
1771 1800 0.803117 GGGCTTGACGGTTTTCTAGC 59.197 55.000 0.00 0.00 41.83 3.42
1772 1801 2.474410 AGGGCTTGACGGTTTTCTAG 57.526 50.000 0.00 0.00 0.00 2.43
1781 1811 3.399330 TGAACTAAAGAAGGGCTTGACG 58.601 45.455 0.00 0.00 36.80 4.35
1808 1838 9.657419 AAAGAAAATCTAAAATTCATCCGCAAT 57.343 25.926 0.00 0.00 0.00 3.56
1838 1868 2.202295 TGCAAACCGAAAAACTCTGC 57.798 45.000 0.00 0.00 0.00 4.26
1885 1923 8.843262 TGAAATTGTATGCAAAGGAGATCATAG 58.157 33.333 0.00 0.00 38.21 2.23
1931 1969 7.167468 GGGTGCATTACATCGTTATGAATTTTC 59.833 37.037 0.00 0.00 36.54 2.29
1938 1976 4.891627 TTGGGTGCATTACATCGTTATG 57.108 40.909 0.00 0.00 39.17 1.90
1940 1978 3.880490 GGATTGGGTGCATTACATCGTTA 59.120 43.478 0.00 0.00 0.00 3.18
1974 2012 6.664816 TCTTCTTGCATCATAGGGAAACAATT 59.335 34.615 0.00 0.00 0.00 2.32
1976 2014 5.415701 GTCTTCTTGCATCATAGGGAAACAA 59.584 40.000 0.00 0.00 0.00 2.83
1984 2022 3.439293 ACGTCGTCTTCTTGCATCATAG 58.561 45.455 0.00 0.00 0.00 2.23
2128 2166 3.897239 ACAGAGGATCCACACACAAAAA 58.103 40.909 15.82 0.00 33.66 1.94
2130 2168 4.641396 CTTACAGAGGATCCACACACAAA 58.359 43.478 15.82 0.00 33.66 2.83
2131 2169 4.271696 CTTACAGAGGATCCACACACAA 57.728 45.455 15.82 0.00 33.66 3.33
2132 2170 3.961480 CTTACAGAGGATCCACACACA 57.039 47.619 15.82 0.00 33.66 3.72
2201 2240 5.703592 TCTTGCAAAAATCGCTAGGTCTTTA 59.296 36.000 0.00 0.00 33.74 1.85
2216 2255 1.034838 ACGTGGCCTGTCTTGCAAAA 61.035 50.000 3.32 0.00 0.00 2.44
2234 2274 2.554032 ACATTTGTTAGCAGCCAGTCAC 59.446 45.455 0.00 0.00 0.00 3.67
2265 4770 7.517734 CGGTGATTGGAACCAAACTTATATACG 60.518 40.741 10.36 3.28 39.55 3.06
2292 4797 1.341383 ACCAATGCCTTCATCACTCCC 60.341 52.381 0.00 0.00 31.27 4.30
2329 4835 4.093743 AGATGGGTGGGGAACAAAATAAC 58.906 43.478 0.00 0.00 0.00 1.89
2349 4855 5.667539 AAGCAGTCTTGAGCAATAGTAGA 57.332 39.130 0.00 0.00 0.00 2.59
2390 4896 5.728351 TCAAACAGTTCTTTACTTGGTCG 57.272 39.130 0.00 0.00 33.85 4.79
2475 4983 3.675225 CGAGAACAGTGTATGTGAACTGG 59.325 47.826 0.00 0.00 46.55 4.00
2477 4985 4.585955 ACGAGAACAGTGTATGTGAACT 57.414 40.909 0.00 0.00 43.00 3.01
2478 4986 4.506654 ACAACGAGAACAGTGTATGTGAAC 59.493 41.667 0.00 0.00 43.00 3.18
2479 4987 4.689071 ACAACGAGAACAGTGTATGTGAA 58.311 39.130 0.00 0.00 43.00 3.18
2481 4989 4.761745 CAACAACGAGAACAGTGTATGTG 58.238 43.478 0.00 0.00 43.00 3.21
2489 5002 2.287644 TCACATGCAACAACGAGAACAG 59.712 45.455 0.00 0.00 0.00 3.16
2496 5009 4.325741 TGTTTTTCTTCACATGCAACAACG 59.674 37.500 0.00 0.00 0.00 4.10
2499 5012 5.658468 TCATGTTTTTCTTCACATGCAACA 58.342 33.333 7.30 0.00 46.72 3.33
2512 5025 4.716943 GCACTAGCTCACTCATGTTTTTC 58.283 43.478 0.00 0.00 37.91 2.29
2530 5043 1.005215 AGGCTCCTGCAAATTAGCACT 59.995 47.619 10.32 4.08 40.11 4.40
2712 5229 3.756069 GTCAAACTGACTCGCGTAGTAT 58.244 45.455 5.77 0.00 43.73 2.12
2748 5265 1.208535 CGGTAGTAGTTCAATGCCCCA 59.791 52.381 0.00 0.00 0.00 4.96
2753 5270 2.093658 AGGGCACGGTAGTAGTTCAATG 60.094 50.000 0.00 0.00 0.00 2.82
2830 5352 8.552034 GGTGATAGTTAAAGCACACTAATCATC 58.448 37.037 0.00 0.00 33.09 2.92
2853 5376 7.218614 TGGGTATTCATATTTAGGTTACGGTG 58.781 38.462 0.00 0.00 0.00 4.94
2964 5869 9.959749 TTGGTTTTATAAGACAAGATCACAAAC 57.040 29.630 8.28 0.00 0.00 2.93
3028 6052 8.486210 AGCAATCCTTCTCTACAAACATACATA 58.514 33.333 0.00 0.00 0.00 2.29
3061 6094 2.098443 ACCAAAACATCGTGTGTCCAAC 59.902 45.455 0.00 0.00 41.14 3.77
3062 6095 2.356382 GACCAAAACATCGTGTGTCCAA 59.644 45.455 0.00 0.00 41.14 3.53
3378 6417 5.246656 ACATTTTGACCATGTTCCATGATGT 59.753 36.000 5.80 4.05 30.22 3.06
3539 6580 1.603802 CAACCCAAGCACACACACTAG 59.396 52.381 0.00 0.00 0.00 2.57
3586 6629 1.515088 CGACAGTGACTAGCCGCTG 60.515 63.158 16.96 16.96 46.82 5.18
3652 6695 8.128582 TGGAACGTGCAGAAATAATGAATTATC 58.871 33.333 0.00 0.00 32.08 1.75
3758 6802 5.358922 TGGATCTTTGTTCCAAAAAGCTTG 58.641 37.500 0.00 0.00 40.29 4.01
3785 8103 7.199078 GTGAGGGCTTTGATAAATCATTCTTC 58.801 38.462 0.00 0.00 36.56 2.87
3884 8202 4.326826 AGCTGCATACTCTTGCTTTACAA 58.673 39.130 1.02 0.00 43.18 2.41
3897 9478 5.406780 GTGGTGATCTTGTATAGCTGCATAC 59.593 44.000 1.02 8.59 32.91 2.39
3905 9486 4.504461 GCGTCAAGTGGTGATCTTGTATAG 59.496 45.833 0.00 0.00 41.78 1.31
3946 9527 5.291128 GGACGTATGTCTCAAAACATGGTAG 59.709 44.000 14.61 0.00 44.83 3.18
4003 9584 4.898265 AGAGCAACTTGAGCCTATAGATCA 59.102 41.667 0.00 2.45 0.00 2.92
4012 9593 3.258228 GACTCTTAGAGCAACTTGAGCC 58.742 50.000 9.44 0.00 34.11 4.70
4017 9598 6.651225 GGTGTAATTGACTCTTAGAGCAACTT 59.349 38.462 16.77 14.42 32.19 2.66
4047 9628 6.019881 GTGATTTTTACACCAAGTTCAAGCAC 60.020 38.462 0.00 0.00 32.84 4.40
4081 9663 6.142161 CGATTCAATGTACACCACAAGTTTTG 59.858 38.462 0.00 0.00 41.55 2.44
4101 9683 4.823790 AACCAAGTTGTTACACCGATTC 57.176 40.909 1.45 0.00 0.00 2.52
4105 9687 4.625972 AAGAAACCAAGTTGTTACACCG 57.374 40.909 1.45 0.00 0.00 4.94
4107 9689 6.975772 TGCATAAAGAAACCAAGTTGTTACAC 59.024 34.615 1.45 0.00 0.00 2.90
4121 9703 5.378292 TGCACCGTATTTGCATAAAGAAA 57.622 34.783 0.00 0.00 45.06 2.52
4160 9742 2.185494 GCCTAGTCAGCCATGCAGC 61.185 63.158 0.00 0.00 0.00 5.25
4166 9748 2.591753 GGCATGCCTAGTCAGCCA 59.408 61.111 29.98 0.00 44.59 4.75
4172 9754 0.673644 GTCACGTTGGCATGCCTAGT 60.674 55.000 35.53 27.39 36.94 2.57
4173 9755 0.673333 TGTCACGTTGGCATGCCTAG 60.673 55.000 35.53 26.77 36.94 3.02
4185 9767 1.612442 AGTGGGCCCTATGTCACGT 60.612 57.895 25.70 0.00 35.50 4.49
4187 9769 0.107654 GACAGTGGGCCCTATGTCAC 60.108 60.000 35.87 22.47 41.32 3.67
4201 9783 1.980765 TGCATCTTCCTTCCTGACAGT 59.019 47.619 0.93 0.00 0.00 3.55
4261 9843 2.031944 GGCTTTCTCGTGACAAGGAAAC 60.032 50.000 9.71 0.00 0.00 2.78
4265 9847 1.291877 CGGGCTTTCTCGTGACAAGG 61.292 60.000 9.71 0.00 0.00 3.61
4283 9865 5.061808 CGAACTAGTGACCAGATAAAAACCG 59.938 44.000 0.00 0.00 0.00 4.44
4287 10941 6.349944 GGACTCGAACTAGTGACCAGATAAAA 60.350 42.308 0.00 0.00 0.00 1.52
4293 10947 1.473278 GGGACTCGAACTAGTGACCAG 59.527 57.143 0.00 0.00 0.00 4.00
4294 10948 1.075050 AGGGACTCGAACTAGTGACCA 59.925 52.381 0.00 0.00 0.00 4.02
4299 10953 2.291411 TGGCTTAGGGACTCGAACTAGT 60.291 50.000 0.00 0.00 41.75 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.