Multiple sequence alignment - TraesCS7A01G222000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G222000 chr7A 100.000 2735 0 0 721 3455 191274103 191276837 0.000000e+00 5051.0
1 TraesCS7A01G222000 chr7A 95.714 70 2 1 3387 3455 110478394 110478325 1.010000e-20 111.0
2 TraesCS7A01G222000 chr7A 100.000 57 0 0 1 57 191273383 191273439 4.720000e-19 106.0
3 TraesCS7A01G222000 chr7A 98.246 57 1 0 1 57 706053149 706053205 2.190000e-17 100.0
4 TraesCS7A01G222000 chr7D 95.253 990 41 3 1529 2517 180843117 180842133 0.000000e+00 1563.0
5 TraesCS7A01G222000 chr7D 91.824 795 28 19 746 1534 180844724 180843961 0.000000e+00 1074.0
6 TraesCS7A01G222000 chr7D 92.654 599 35 3 2805 3394 180830924 180830326 0.000000e+00 854.0
7 TraesCS7A01G222000 chr7D 91.579 190 11 1 2558 2747 180831238 180831054 1.230000e-64 257.0
8 TraesCS7A01G222000 chr7D 89.873 79 6 2 3378 3455 46709907 46709830 2.190000e-17 100.0
9 TraesCS7A01G222000 chr7B 93.954 1042 49 10 1529 2563 147533210 147532176 0.000000e+00 1563.0
10 TraesCS7A01G222000 chr7B 91.121 642 35 14 746 1386 147555375 147554755 0.000000e+00 850.0
11 TraesCS7A01G222000 chr7B 94.620 316 17 0 2943 3258 147531852 147531537 1.110000e-134 490.0
12 TraesCS7A01G222000 chr7B 98.684 152 2 0 1382 1533 147549534 147549383 1.580000e-68 270.0
13 TraesCS7A01G222000 chr7B 83.529 170 23 3 3091 3259 147531538 147531373 1.660000e-33 154.0
14 TraesCS7A01G222000 chr1A 97.059 68 2 0 3388 3455 317819009 317819076 7.840000e-22 115.0
15 TraesCS7A01G222000 chr1A 95.714 70 3 0 3386 3455 14150696 14150765 2.820000e-21 113.0
16 TraesCS7A01G222000 chr1A 94.444 72 4 0 3384 3455 53994418 53994489 1.010000e-20 111.0
17 TraesCS7A01G222000 chr1A 78.899 109 19 4 2037 2143 110283311 110283205 1.720000e-08 71.3
18 TraesCS7A01G222000 chr6A 97.015 67 1 1 3389 3455 60158546 60158611 1.010000e-20 111.0
19 TraesCS7A01G222000 chr3B 98.413 63 1 0 3393 3455 43492226 43492288 1.010000e-20 111.0
20 TraesCS7A01G222000 chr3B 82.653 98 17 0 2097 2194 5939648 5939745 1.710000e-13 87.9
21 TraesCS7A01G222000 chr3B 80.460 87 16 1 2859 2944 115237645 115237731 8.000000e-07 65.8
22 TraesCS7A01G222000 chr4A 100.000 57 0 0 1 57 587305482 587305426 4.720000e-19 106.0
23 TraesCS7A01G222000 chr4A 91.892 74 4 1 3379 3452 163793317 163793388 6.100000e-18 102.0
24 TraesCS7A01G222000 chr3D 92.105 76 5 1 3381 3455 29803432 29803357 4.720000e-19 106.0
25 TraesCS7A01G222000 chr3D 81.633 98 18 0 2097 2194 709012 709109 7.950000e-12 82.4
26 TraesCS7A01G222000 chr2B 88.506 87 10 0 2859 2945 86681144 86681058 4.720000e-19 106.0
27 TraesCS7A01G222000 chr2A 98.246 57 1 0 1 57 735575093 735575149 2.190000e-17 100.0
28 TraesCS7A01G222000 chr2A 100.000 29 0 0 2115 2143 528170660 528170688 2.000000e-03 54.7
29 TraesCS7A01G222000 chr3A 98.214 56 1 0 1 56 7379350 7379295 7.890000e-17 99.0
30 TraesCS7A01G222000 chr3A 82.653 98 17 0 2097 2194 8909180 8909083 1.710000e-13 87.9
31 TraesCS7A01G222000 chr2D 96.491 57 2 0 1 57 432025111 432025167 1.020000e-15 95.3
32 TraesCS7A01G222000 chr4D 85.882 85 12 0 2860 2944 31338435 31338351 1.320000e-14 91.6
33 TraesCS7A01G222000 chr5B 81.915 94 15 2 2051 2143 567581483 567581391 1.030000e-10 78.7
34 TraesCS7A01G222000 chr5B 75.862 145 29 6 2040 2181 65525333 65525192 6.190000e-08 69.4
35 TraesCS7A01G222000 chr1B 81.395 86 16 0 2097 2182 590092103 590092188 1.720000e-08 71.3
36 TraesCS7A01G222000 chr6B 90.566 53 4 1 6 57 139447435 139447383 6.190000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G222000 chr7A 191273383 191276837 3454 False 2578.500000 5051 100.0000 1 3455 2 chr7A.!!$F2 3454
1 TraesCS7A01G222000 chr7D 180842133 180844724 2591 True 1318.500000 1563 93.5385 746 2517 2 chr7D.!!$R3 1771
2 TraesCS7A01G222000 chr7D 180830326 180831238 912 True 555.500000 854 92.1165 2558 3394 2 chr7D.!!$R2 836
3 TraesCS7A01G222000 chr7B 147554755 147555375 620 True 850.000000 850 91.1210 746 1386 1 chr7B.!!$R2 640
4 TraesCS7A01G222000 chr7B 147531373 147533210 1837 True 735.666667 1563 90.7010 1529 3259 3 chr7B.!!$R3 1730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 899 1.365633 GAGGTAGCTGCGGGATCAG 59.634 63.158 0.0 0.0 37.15 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2633 3539 0.313672 GCATTTTCGGCACCAGTTGA 59.686 50.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.873129 CGGATGGAGCGTGGACGG 62.873 72.222 0.71 0.00 40.23 4.79
872 878 8.937634 GAATCATTTTATTCCTTTGATGTGCT 57.062 30.769 0.00 0.00 30.96 4.40
874 880 7.230849 TCATTTTATTCCTTTGATGTGCTGT 57.769 32.000 0.00 0.00 0.00 4.40
876 882 6.647334 TTTTATTCCTTTGATGTGCTGTGA 57.353 33.333 0.00 0.00 0.00 3.58
877 883 5.885230 TTATTCCTTTGATGTGCTGTGAG 57.115 39.130 0.00 0.00 0.00 3.51
878 884 2.189594 TCCTTTGATGTGCTGTGAGG 57.810 50.000 0.00 0.00 0.00 3.86
893 899 1.365633 GAGGTAGCTGCGGGATCAG 59.634 63.158 0.00 0.00 37.15 2.90
922 928 6.950860 ATTTGGTGGTCCCTTGATTAATTT 57.049 33.333 0.00 0.00 0.00 1.82
937 943 9.626045 CTTGATTAATTTACTTCCTTTCACACC 57.374 33.333 0.00 0.00 0.00 4.16
981 987 3.436035 GGGTAAGGTGTCAAAAAGGTCCT 60.436 47.826 0.00 0.00 0.00 3.85
1022 1028 3.864243 TGTCAAACTTCACACTTACCGT 58.136 40.909 0.00 0.00 0.00 4.83
1027 1033 3.832615 ACTTCACACTTACCGTTCCTT 57.167 42.857 0.00 0.00 0.00 3.36
1028 1034 3.725490 ACTTCACACTTACCGTTCCTTC 58.275 45.455 0.00 0.00 0.00 3.46
1029 1035 3.387050 ACTTCACACTTACCGTTCCTTCT 59.613 43.478 0.00 0.00 0.00 2.85
1030 1036 4.141779 ACTTCACACTTACCGTTCCTTCTT 60.142 41.667 0.00 0.00 0.00 2.52
1031 1037 3.986277 TCACACTTACCGTTCCTTCTTC 58.014 45.455 0.00 0.00 0.00 2.87
1032 1038 3.064931 CACACTTACCGTTCCTTCTTCC 58.935 50.000 0.00 0.00 0.00 3.46
1033 1039 2.970640 ACACTTACCGTTCCTTCTTCCT 59.029 45.455 0.00 0.00 0.00 3.36
1162 1168 1.516423 GCCGTAACTCTGGTCTCCC 59.484 63.158 0.00 0.00 0.00 4.30
1375 1381 2.045926 GCATGGCCAAGGACGACT 60.046 61.111 10.96 0.00 0.00 4.18
1414 1420 4.657824 ACCTGTTCGTCGCGTGGG 62.658 66.667 5.77 1.78 0.00 4.61
1464 1470 3.181967 CACGCCTTCTTCGCCTCG 61.182 66.667 0.00 0.00 0.00 4.63
1899 2757 1.153289 CCAGAACTCCATCCGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
2031 2889 1.536462 GATTCGAGAAGAGAGCGCGC 61.536 60.000 26.66 26.66 0.00 6.86
2053 2911 1.587043 CGAGAACAGAGGGCTCGTCA 61.587 60.000 0.00 0.00 44.59 4.35
2149 3007 2.435586 CGGTGCTGGAGAGCCTTG 60.436 66.667 0.00 0.00 45.57 3.61
2255 3113 3.787001 GGAGGTGGCGAGGGGAAG 61.787 72.222 0.00 0.00 0.00 3.46
2399 3257 2.176055 CGCAGCTACAGACGACGT 59.824 61.111 0.00 0.00 0.00 4.34
2479 3337 1.381599 CATGGGTGGGGAACATGGG 60.382 63.158 0.00 0.00 38.58 4.00
2480 3338 3.315952 ATGGGTGGGGAACATGGGC 62.316 63.158 0.00 0.00 0.00 5.36
2481 3339 3.672503 GGGTGGGGAACATGGGCT 61.673 66.667 0.00 0.00 0.00 5.19
2482 3340 2.043953 GGTGGGGAACATGGGCTC 60.044 66.667 0.00 0.00 0.00 4.70
2522 3382 5.220605 GGCAATGTTAGACTTACGTCCAATC 60.221 44.000 0.00 0.00 41.16 2.67
2538 3398 5.749109 CGTCCAATCATTCTACACCTACTTC 59.251 44.000 0.00 0.00 0.00 3.01
2539 3399 6.049790 GTCCAATCATTCTACACCTACTTCC 58.950 44.000 0.00 0.00 0.00 3.46
2540 3400 5.050490 CCAATCATTCTACACCTACTTCCG 58.950 45.833 0.00 0.00 0.00 4.30
2542 3402 3.705051 TCATTCTACACCTACTTCCGGT 58.295 45.455 0.00 0.00 34.38 5.28
2543 3403 3.698040 TCATTCTACACCTACTTCCGGTC 59.302 47.826 0.00 0.00 30.82 4.79
2544 3404 2.885135 TCTACACCTACTTCCGGTCA 57.115 50.000 0.00 0.00 30.82 4.02
2546 3406 3.705051 TCTACACCTACTTCCGGTCAAT 58.295 45.455 0.00 0.00 30.82 2.57
2613 3519 5.324409 TGGCCAATCCTCCATAAATCATAC 58.676 41.667 0.61 0.00 35.26 2.39
2622 3528 9.830186 ATCCTCCATAAATCATACAGTAGTACT 57.170 33.333 0.00 0.00 31.96 2.73
2751 3657 3.637714 CCAGTTGTTGGGTCGTCG 58.362 61.111 0.00 0.00 43.75 5.12
2760 3666 4.688419 GGGTCGTCGCGTCGTTCA 62.688 66.667 23.80 3.56 0.00 3.18
2780 3686 5.456548 TCAGTGGACGTACAAACTATTCA 57.543 39.130 0.00 0.00 0.00 2.57
2795 3701 4.424626 ACTATTCATCGTGTGTGCAGTAG 58.575 43.478 0.00 0.00 0.00 2.57
2798 3704 3.106242 TCATCGTGTGTGCAGTAGTTT 57.894 42.857 0.00 0.00 0.00 2.66
2820 3839 4.324267 TCGAAGGAGAAATGGACTTTTCC 58.676 43.478 6.96 0.00 43.19 3.13
2836 3855 4.829492 ACTTTTCCTGTGGGAGAAATGAAG 59.171 41.667 0.00 0.00 43.29 3.02
2861 3963 5.464965 TTTAGCTGCGAGCAAAGTATTAC 57.535 39.130 0.00 0.00 45.56 1.89
2862 3964 3.252974 AGCTGCGAGCAAAGTATTACT 57.747 42.857 10.16 0.00 45.56 2.24
2863 3965 3.190874 AGCTGCGAGCAAAGTATTACTC 58.809 45.455 10.16 0.00 45.56 2.59
2864 3966 2.285488 GCTGCGAGCAAAGTATTACTCC 59.715 50.000 0.00 0.00 41.89 3.85
2865 3967 2.535984 CTGCGAGCAAAGTATTACTCCG 59.464 50.000 0.00 0.00 30.12 4.63
2866 3968 1.859080 GCGAGCAAAGTATTACTCCGG 59.141 52.381 0.00 0.00 30.12 5.14
2867 3969 1.859080 CGAGCAAAGTATTACTCCGGC 59.141 52.381 0.00 2.05 30.12 6.13
2868 3970 2.481449 CGAGCAAAGTATTACTCCGGCT 60.481 50.000 13.46 13.46 33.46 5.52
2869 3971 2.866762 GAGCAAAGTATTACTCCGGCTG 59.133 50.000 16.70 0.00 31.78 4.85
2870 3972 2.236395 AGCAAAGTATTACTCCGGCTGT 59.764 45.455 13.03 0.00 30.90 4.40
2871 3973 3.007635 GCAAAGTATTACTCCGGCTGTT 58.992 45.455 0.00 0.00 0.00 3.16
2872 3974 3.063588 GCAAAGTATTACTCCGGCTGTTC 59.936 47.826 0.00 0.00 0.00 3.18
2873 3975 3.538634 AAGTATTACTCCGGCTGTTCC 57.461 47.619 0.00 0.00 0.00 3.62
2874 3976 2.463752 AGTATTACTCCGGCTGTTCCA 58.536 47.619 0.00 0.00 34.01 3.53
2875 3977 3.039011 AGTATTACTCCGGCTGTTCCAT 58.961 45.455 0.00 0.00 34.01 3.41
2876 3978 4.220724 AGTATTACTCCGGCTGTTCCATA 58.779 43.478 0.00 0.00 34.01 2.74
2877 3979 4.652421 AGTATTACTCCGGCTGTTCCATAA 59.348 41.667 0.00 0.00 34.01 1.90
2878 3980 4.706842 ATTACTCCGGCTGTTCCATAAT 57.293 40.909 0.00 0.00 34.01 1.28
2879 3981 5.818678 ATTACTCCGGCTGTTCCATAATA 57.181 39.130 0.00 0.00 34.01 0.98
2880 3982 5.818678 TTACTCCGGCTGTTCCATAATAT 57.181 39.130 0.00 0.00 34.01 1.28
2881 3983 6.921486 TTACTCCGGCTGTTCCATAATATA 57.079 37.500 0.00 0.00 34.01 0.86
2882 3984 5.818678 ACTCCGGCTGTTCCATAATATAA 57.181 39.130 0.00 0.00 34.01 0.98
2883 3985 6.182507 ACTCCGGCTGTTCCATAATATAAA 57.817 37.500 0.00 0.00 34.01 1.40
2884 3986 6.597562 ACTCCGGCTGTTCCATAATATAAAA 58.402 36.000 0.00 0.00 34.01 1.52
2885 3987 7.057894 ACTCCGGCTGTTCCATAATATAAAAA 58.942 34.615 0.00 0.00 34.01 1.94
2886 3988 7.724061 ACTCCGGCTGTTCCATAATATAAAAAT 59.276 33.333 0.00 0.00 34.01 1.82
2887 3989 7.881142 TCCGGCTGTTCCATAATATAAAAATG 58.119 34.615 0.00 0.00 34.01 2.32
2888 3990 7.504238 TCCGGCTGTTCCATAATATAAAAATGT 59.496 33.333 0.00 0.00 34.01 2.71
2889 3991 8.141268 CCGGCTGTTCCATAATATAAAAATGTT 58.859 33.333 0.00 0.00 34.01 2.71
2890 3992 9.528018 CGGCTGTTCCATAATATAAAAATGTTT 57.472 29.630 0.00 0.00 34.01 2.83
2935 4037 7.510549 AAAATGTTCTCATATTATGGGACGG 57.489 36.000 5.72 0.00 40.05 4.79
2936 4038 6.433847 AATGTTCTCATATTATGGGACGGA 57.566 37.500 5.72 0.00 40.05 4.69
2937 4039 5.880164 TGTTCTCATATTATGGGACGGAA 57.120 39.130 5.72 0.95 40.05 4.30
2938 4040 5.853936 TGTTCTCATATTATGGGACGGAAG 58.146 41.667 5.72 0.00 40.05 3.46
2939 4041 5.221641 TGTTCTCATATTATGGGACGGAAGG 60.222 44.000 5.72 0.00 40.05 3.46
2940 4042 4.747583 TCTCATATTATGGGACGGAAGGA 58.252 43.478 1.94 0.00 34.11 3.36
2941 4043 4.772624 TCTCATATTATGGGACGGAAGGAG 59.227 45.833 1.94 0.00 34.11 3.69
2942 4044 4.489737 TCATATTATGGGACGGAAGGAGT 58.510 43.478 3.89 0.00 0.00 3.85
2943 4045 5.647230 TCATATTATGGGACGGAAGGAGTA 58.353 41.667 3.89 0.00 0.00 2.59
2948 4050 1.104630 GGGACGGAAGGAGTAGAGTG 58.895 60.000 0.00 0.00 0.00 3.51
2956 4058 4.327680 GGAAGGAGTAGAGTGCAACAAAT 58.672 43.478 0.00 0.00 41.43 2.32
2962 4064 8.668510 AGGAGTAGAGTGCAACAAATATATTG 57.331 34.615 0.00 0.00 41.43 1.90
3079 4188 5.163804 GGTTGTTTGTTGCCGAAAAGATTTT 60.164 36.000 0.00 0.00 0.00 1.82
3115 4224 4.902443 TTTAATCGTGCCAAGTTGTCAA 57.098 36.364 1.45 0.00 0.00 3.18
3226 4335 0.539986 TTCATACTGCTTCCCGGGTC 59.460 55.000 22.86 11.74 0.00 4.46
3258 4411 5.890334 TCAATTGCCGGAAAGATTTATCAC 58.110 37.500 5.05 0.00 0.00 3.06
3259 4412 4.552166 ATTGCCGGAAAGATTTATCACG 57.448 40.909 5.05 0.00 0.00 4.35
3260 4413 1.668751 TGCCGGAAAGATTTATCACGC 59.331 47.619 5.05 0.00 0.00 5.34
3261 4414 1.940613 GCCGGAAAGATTTATCACGCT 59.059 47.619 5.05 0.00 0.00 5.07
3262 4415 2.354821 GCCGGAAAGATTTATCACGCTT 59.645 45.455 5.05 0.00 0.00 4.68
3263 4416 3.788797 GCCGGAAAGATTTATCACGCTTG 60.789 47.826 5.05 0.00 0.00 4.01
3264 4417 3.374058 CCGGAAAGATTTATCACGCTTGT 59.626 43.478 0.00 0.00 0.00 3.16
3265 4418 4.494199 CCGGAAAGATTTATCACGCTTGTC 60.494 45.833 0.00 0.00 0.00 3.18
3266 4419 4.092821 CGGAAAGATTTATCACGCTTGTCA 59.907 41.667 0.00 0.00 0.00 3.58
3267 4420 5.220662 CGGAAAGATTTATCACGCTTGTCAT 60.221 40.000 0.00 0.00 0.00 3.06
3268 4421 6.019075 CGGAAAGATTTATCACGCTTGTCATA 60.019 38.462 0.00 0.00 0.00 2.15
3269 4422 7.307396 CGGAAAGATTTATCACGCTTGTCATAT 60.307 37.037 0.00 0.00 0.00 1.78
3270 4423 8.345565 GGAAAGATTTATCACGCTTGTCATATT 58.654 33.333 0.00 0.00 0.00 1.28
3271 4424 9.722056 GAAAGATTTATCACGCTTGTCATATTT 57.278 29.630 0.00 0.00 0.00 1.40
3279 4432 8.619146 ATCACGCTTGTCATATTTTAATTGTG 57.381 30.769 0.00 0.00 0.00 3.33
3280 4433 6.526325 TCACGCTTGTCATATTTTAATTGTGC 59.474 34.615 0.00 0.00 0.00 4.57
3281 4434 5.804979 ACGCTTGTCATATTTTAATTGTGCC 59.195 36.000 0.00 0.00 0.00 5.01
3282 4435 5.804473 CGCTTGTCATATTTTAATTGTGCCA 59.196 36.000 0.00 0.00 0.00 4.92
3283 4436 6.309980 CGCTTGTCATATTTTAATTGTGCCAA 59.690 34.615 0.00 0.00 0.00 4.52
3284 4437 7.463119 CGCTTGTCATATTTTAATTGTGCCAAG 60.463 37.037 4.04 4.04 0.00 3.61
3285 4438 7.545265 GCTTGTCATATTTTAATTGTGCCAAGA 59.455 33.333 10.05 0.00 0.00 3.02
3286 4439 9.590451 CTTGTCATATTTTAATTGTGCCAAGAT 57.410 29.630 2.75 0.00 0.00 2.40
3287 4440 9.941325 TTGTCATATTTTAATTGTGCCAAGATT 57.059 25.926 0.00 0.00 0.00 2.40
3288 4441 9.941325 TGTCATATTTTAATTGTGCCAAGATTT 57.059 25.926 0.00 0.00 0.00 2.17
3295 4448 8.422973 TTTAATTGTGCCAAGATTTATCATGC 57.577 30.769 0.00 0.00 0.00 4.06
3296 4449 5.864418 ATTGTGCCAAGATTTATCATGCT 57.136 34.783 0.00 0.00 0.00 3.79
3297 4450 5.664294 TTGTGCCAAGATTTATCATGCTT 57.336 34.783 0.00 0.00 0.00 3.91
3298 4451 5.001237 TGTGCCAAGATTTATCATGCTTG 57.999 39.130 0.00 0.00 37.93 4.01
3299 4452 4.463539 TGTGCCAAGATTTATCATGCTTGT 59.536 37.500 0.00 0.00 36.81 3.16
3300 4453 5.039333 GTGCCAAGATTTATCATGCTTGTC 58.961 41.667 0.00 0.00 36.81 3.18
3301 4454 4.705991 TGCCAAGATTTATCATGCTTGTCA 59.294 37.500 0.00 0.00 36.81 3.58
3324 4477 8.987890 GTCATATTTAAATTGTGCCAAGTTGTT 58.012 29.630 5.91 0.00 0.00 2.83
3353 4508 2.101917 CCGCTTCCCGAGGTATTTAGAA 59.898 50.000 0.00 0.00 40.02 2.10
3362 4517 7.514721 TCCCGAGGTATTTAGAAATAATTGCT 58.485 34.615 0.00 0.00 33.05 3.91
3363 4518 7.444183 TCCCGAGGTATTTAGAAATAATTGCTG 59.556 37.037 0.00 0.00 33.05 4.41
3395 4551 4.757594 TGCCATGCTTGCTATTTTTAAGG 58.242 39.130 0.00 0.00 0.00 2.69
3396 4552 4.465660 TGCCATGCTTGCTATTTTTAAGGA 59.534 37.500 0.00 0.00 0.00 3.36
3397 4553 4.805719 GCCATGCTTGCTATTTTTAAGGAC 59.194 41.667 0.00 0.00 0.00 3.85
3398 4554 5.036737 CCATGCTTGCTATTTTTAAGGACG 58.963 41.667 0.00 0.00 0.00 4.79
3399 4555 4.091453 TGCTTGCTATTTTTAAGGACGC 57.909 40.909 0.00 0.00 31.48 5.19
3400 4556 3.119637 TGCTTGCTATTTTTAAGGACGCC 60.120 43.478 0.00 0.00 30.03 5.68
3401 4557 3.680789 CTTGCTATTTTTAAGGACGCCG 58.319 45.455 0.00 0.00 0.00 6.46
3402 4558 2.975266 TGCTATTTTTAAGGACGCCGA 58.025 42.857 0.00 0.00 0.00 5.54
3403 4559 3.537580 TGCTATTTTTAAGGACGCCGAT 58.462 40.909 0.00 0.00 0.00 4.18
3404 4560 4.695396 TGCTATTTTTAAGGACGCCGATA 58.305 39.130 0.00 0.00 0.00 2.92
3406 4562 5.235616 TGCTATTTTTAAGGACGCCGATAAG 59.764 40.000 0.00 0.00 0.00 1.73
3407 4563 5.235831 GCTATTTTTAAGGACGCCGATAAGT 59.764 40.000 0.00 0.00 0.00 2.24
3408 4564 4.932268 TTTTTAAGGACGCCGATAAGTG 57.068 40.909 0.00 0.00 0.00 3.16
3409 4565 1.930567 TTAAGGACGCCGATAAGTGC 58.069 50.000 0.00 0.00 0.00 4.40
3410 4566 0.103572 TAAGGACGCCGATAAGTGCC 59.896 55.000 0.00 0.00 0.00 5.01
3411 4567 1.895020 AAGGACGCCGATAAGTGCCA 61.895 55.000 0.00 0.00 0.00 4.92
3412 4568 2.171725 GGACGCCGATAAGTGCCAC 61.172 63.158 0.00 0.00 0.00 5.01
3413 4569 1.447140 GACGCCGATAAGTGCCACA 60.447 57.895 0.00 0.00 0.00 4.17
3415 4571 2.798501 CGCCGATAAGTGCCACACG 61.799 63.158 0.00 0.00 39.64 4.49
3417 4573 1.966493 GCCGATAAGTGCCACACGTG 61.966 60.000 15.48 15.48 39.64 4.49
3418 4574 0.669318 CCGATAAGTGCCACACGTGT 60.669 55.000 17.22 17.22 39.64 4.49
3419 4575 0.438445 CGATAAGTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
3428 4584 2.663852 ACACGTGTGGGCGTTAGC 60.664 61.111 22.71 0.00 43.83 3.09
3430 4586 3.980989 ACGTGTGGGCGTTAGCGA 61.981 61.111 2.07 0.00 43.04 4.93
3431 4587 3.179265 CGTGTGGGCGTTAGCGAG 61.179 66.667 2.07 0.00 46.35 5.03
3432 4588 2.048503 GTGTGGGCGTTAGCGAGT 60.049 61.111 2.07 0.00 46.35 4.18
3434 4590 2.508663 GTGGGCGTTAGCGAGTCC 60.509 66.667 2.07 1.35 46.35 3.85
3435 4591 4.124351 TGGGCGTTAGCGAGTCCG 62.124 66.667 2.07 0.00 46.35 4.79
3446 4602 1.671054 CGAGTCCGCCCACACATTT 60.671 57.895 0.00 0.00 0.00 2.32
3448 4604 0.240945 GAGTCCGCCCACACATTTTG 59.759 55.000 0.00 0.00 0.00 2.44
3449 4605 0.467290 AGTCCGCCCACACATTTTGT 60.467 50.000 0.00 0.00 39.97 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.873129 CCGTCCACGCTCCATCCG 62.873 72.222 0.00 0.00 38.18 4.18
726 727 9.845740 GTGGCAATCTCTATCTCTATCTCTATA 57.154 37.037 0.00 0.00 0.00 1.31
727 728 7.779798 GGTGGCAATCTCTATCTCTATCTCTAT 59.220 40.741 0.00 0.00 0.00 1.98
728 729 7.036935 AGGTGGCAATCTCTATCTCTATCTCTA 60.037 40.741 0.00 0.00 0.00 2.43
729 730 5.951747 GGTGGCAATCTCTATCTCTATCTCT 59.048 44.000 0.00 0.00 0.00 3.10
730 731 5.951747 AGGTGGCAATCTCTATCTCTATCTC 59.048 44.000 0.00 0.00 0.00 2.75
731 732 5.902760 AGGTGGCAATCTCTATCTCTATCT 58.097 41.667 0.00 0.00 0.00 1.98
732 733 6.210385 TCAAGGTGGCAATCTCTATCTCTATC 59.790 42.308 0.00 0.00 0.00 2.08
733 734 6.080682 TCAAGGTGGCAATCTCTATCTCTAT 58.919 40.000 0.00 0.00 0.00 1.98
734 735 5.458595 TCAAGGTGGCAATCTCTATCTCTA 58.541 41.667 0.00 0.00 0.00 2.43
735 736 4.293494 TCAAGGTGGCAATCTCTATCTCT 58.707 43.478 0.00 0.00 0.00 3.10
736 737 4.679373 TCAAGGTGGCAATCTCTATCTC 57.321 45.455 0.00 0.00 0.00 2.75
737 738 5.012561 GGTATCAAGGTGGCAATCTCTATCT 59.987 44.000 0.00 0.00 0.00 1.98
738 739 5.241662 GGTATCAAGGTGGCAATCTCTATC 58.758 45.833 0.00 0.00 0.00 2.08
739 740 4.042187 GGGTATCAAGGTGGCAATCTCTAT 59.958 45.833 0.00 0.00 0.00 1.98
740 741 3.391296 GGGTATCAAGGTGGCAATCTCTA 59.609 47.826 0.00 0.00 0.00 2.43
741 742 2.173569 GGGTATCAAGGTGGCAATCTCT 59.826 50.000 0.00 0.00 0.00 3.10
742 743 2.576615 GGGTATCAAGGTGGCAATCTC 58.423 52.381 0.00 0.00 0.00 2.75
743 744 1.134098 CGGGTATCAAGGTGGCAATCT 60.134 52.381 0.00 0.00 0.00 2.40
744 745 1.308998 CGGGTATCAAGGTGGCAATC 58.691 55.000 0.00 0.00 0.00 2.67
813 814 9.910511 GTCCGTGTTTTATTTAGTGTATGTATG 57.089 33.333 0.00 0.00 0.00 2.39
815 816 7.275341 CCGTCCGTGTTTTATTTAGTGTATGTA 59.725 37.037 0.00 0.00 0.00 2.29
828 834 2.311701 CGCTGCCGTCCGTGTTTTA 61.312 57.895 0.00 0.00 0.00 1.52
865 871 1.649664 CAGCTACCTCACAGCACATC 58.350 55.000 0.00 0.00 41.66 3.06
866 872 0.392193 GCAGCTACCTCACAGCACAT 60.392 55.000 0.00 0.00 41.66 3.21
868 874 2.097038 CGCAGCTACCTCACAGCAC 61.097 63.158 0.00 0.00 41.66 4.40
871 877 1.680522 ATCCCGCAGCTACCTCACAG 61.681 60.000 0.00 0.00 0.00 3.66
872 878 1.676678 GATCCCGCAGCTACCTCACA 61.677 60.000 0.00 0.00 0.00 3.58
874 880 1.381191 TGATCCCGCAGCTACCTCA 60.381 57.895 0.00 0.00 0.00 3.86
876 882 1.075970 TCTGATCCCGCAGCTACCT 60.076 57.895 0.00 0.00 35.86 3.08
877 883 1.365633 CTCTGATCCCGCAGCTACC 59.634 63.158 0.00 0.00 35.86 3.18
878 884 0.031449 GACTCTGATCCCGCAGCTAC 59.969 60.000 0.00 0.00 35.86 3.58
893 899 3.263425 TCAAGGGACCACCAAATAGACTC 59.737 47.826 0.00 0.00 43.89 3.36
922 928 2.960384 TGTCGAGGTGTGAAAGGAAGTA 59.040 45.455 0.00 0.00 0.00 2.24
937 943 5.144359 CCGTGGACTTTTAAAATTGTCGAG 58.856 41.667 11.88 7.36 0.00 4.04
981 987 7.122138 TGACATGTACGGTACCCAAATATAA 57.878 36.000 15.26 0.00 0.00 0.98
1005 1011 4.146745 AGGAACGGTAAGTGTGAAGTTT 57.853 40.909 0.00 0.00 0.00 2.66
1022 1028 3.356290 GCCATTGCTAAGGAAGAAGGAA 58.644 45.455 0.00 0.00 33.53 3.36
1027 1033 1.683011 GCTGGCCATTGCTAAGGAAGA 60.683 52.381 5.51 0.00 37.74 2.87
1028 1034 0.743097 GCTGGCCATTGCTAAGGAAG 59.257 55.000 5.51 0.00 37.74 3.46
1029 1035 0.039472 TGCTGGCCATTGCTAAGGAA 59.961 50.000 17.08 0.00 37.74 3.36
1030 1036 0.680921 GTGCTGGCCATTGCTAAGGA 60.681 55.000 17.08 0.00 37.74 3.36
1031 1037 1.669999 GGTGCTGGCCATTGCTAAGG 61.670 60.000 17.08 0.00 37.74 2.69
1032 1038 0.966875 TGGTGCTGGCCATTGCTAAG 60.967 55.000 17.08 0.00 37.74 2.18
1033 1039 0.541530 TTGGTGCTGGCCATTGCTAA 60.542 50.000 17.08 6.86 38.48 3.09
1212 1218 1.079057 GAAGGGGAGCGAGTGGAAC 60.079 63.158 0.00 0.00 0.00 3.62
1375 1381 1.078637 AGACGATGGAGACGACGGA 60.079 57.895 0.00 0.00 36.18 4.69
1796 2654 3.423154 GCACTTTGTCGGCGGAGG 61.423 66.667 7.21 0.00 0.00 4.30
1811 2669 1.739929 CTTACCATGCCGTCGTGCA 60.740 57.895 10.19 10.19 46.94 4.57
1863 2721 1.154150 GGACCCGAACGACACGTAG 60.154 63.158 0.00 0.00 39.99 3.51
1944 2802 0.603975 GGATAGCCCAGATGAACGGC 60.604 60.000 0.00 0.00 43.35 5.68
2031 2889 1.137825 GAGCCCTCTGTTCTCGTCG 59.862 63.158 0.00 0.00 0.00 5.12
2360 3218 0.528466 TCTCATCAACTCGCCGATGC 60.528 55.000 0.00 0.00 39.11 3.91
2399 3257 0.391130 CGCCTTCTTCGATGACCCAA 60.391 55.000 0.00 0.00 0.00 4.12
2479 3337 0.445436 CCTTTGTCATGTGAGCGAGC 59.555 55.000 0.00 0.00 0.00 5.03
2480 3338 1.081892 CCCTTTGTCATGTGAGCGAG 58.918 55.000 0.00 0.00 0.00 5.03
2481 3339 0.955428 GCCCTTTGTCATGTGAGCGA 60.955 55.000 0.00 0.00 0.00 4.93
2482 3340 1.236616 TGCCCTTTGTCATGTGAGCG 61.237 55.000 0.00 0.00 0.00 5.03
2522 3382 3.446161 TGACCGGAAGTAGGTGTAGAATG 59.554 47.826 9.46 0.00 43.01 2.67
2538 3398 4.248058 AGGAAGTTTACGTAATTGACCGG 58.752 43.478 9.18 0.00 0.00 5.28
2539 3399 4.328169 GGAGGAAGTTTACGTAATTGACCG 59.672 45.833 9.18 0.00 0.00 4.79
2540 3400 4.633126 GGGAGGAAGTTTACGTAATTGACC 59.367 45.833 9.18 10.66 0.00 4.02
2542 3402 4.533311 AGGGGAGGAAGTTTACGTAATTGA 59.467 41.667 9.18 0.00 0.00 2.57
2543 3403 4.840271 AGGGGAGGAAGTTTACGTAATTG 58.160 43.478 9.18 0.00 0.00 2.32
2544 3404 5.509832 AAGGGGAGGAAGTTTACGTAATT 57.490 39.130 9.18 0.94 0.00 1.40
2546 3406 6.625532 AATAAGGGGAGGAAGTTTACGTAA 57.374 37.500 3.29 3.29 0.00 3.18
2622 3528 3.581755 GCACCAGTTGACGATTACTACA 58.418 45.455 0.00 0.00 0.00 2.74
2623 3529 2.928116 GGCACCAGTTGACGATTACTAC 59.072 50.000 0.00 0.00 0.00 2.73
2624 3530 3.241067 GGCACCAGTTGACGATTACTA 57.759 47.619 0.00 0.00 0.00 1.82
2625 3531 2.094762 GGCACCAGTTGACGATTACT 57.905 50.000 0.00 0.00 0.00 2.24
2633 3539 0.313672 GCATTTTCGGCACCAGTTGA 59.686 50.000 0.00 0.00 0.00 3.18
2666 3572 2.233922 CGTTTCCATCCTAGTGTGTCCT 59.766 50.000 0.00 0.00 0.00 3.85
2667 3573 2.232941 TCGTTTCCATCCTAGTGTGTCC 59.767 50.000 0.00 0.00 0.00 4.02
2735 3641 2.935955 GCGACGACCCAACAACTG 59.064 61.111 0.00 0.00 0.00 3.16
2747 3653 3.458579 CCACTGAACGACGCGACG 61.459 66.667 27.89 27.89 39.31 5.12
2748 3654 2.050714 TCCACTGAACGACGCGAC 60.051 61.111 15.93 5.54 0.00 5.19
2749 3655 2.050714 GTCCACTGAACGACGCGA 60.051 61.111 15.93 0.00 0.00 5.87
2750 3656 3.458579 CGTCCACTGAACGACGCG 61.459 66.667 3.53 3.53 44.54 6.01
2760 3666 5.100259 CGATGAATAGTTTGTACGTCCACT 58.900 41.667 0.00 0.00 0.00 4.00
2780 3686 2.058798 CGAAACTACTGCACACACGAT 58.941 47.619 0.00 0.00 0.00 3.73
2795 3701 5.690997 AAAGTCCATTTCTCCTTCGAAAC 57.309 39.130 0.00 0.00 35.88 2.78
2798 3704 4.324267 GGAAAAGTCCATTTCTCCTTCGA 58.676 43.478 0.00 0.00 44.26 3.71
2820 3839 6.015940 AGCTAAAAACTTCATTTCTCCCACAG 60.016 38.462 0.00 0.00 0.00 3.66
2836 3855 3.000082 ACTTTGCTCGCAGCTAAAAAC 58.000 42.857 9.12 0.00 42.97 2.43
2910 4012 7.777910 TCCGTCCCATAATATGAGAACATTTTT 59.222 33.333 1.10 0.00 37.87 1.94
2911 4013 7.287061 TCCGTCCCATAATATGAGAACATTTT 58.713 34.615 1.10 0.00 37.87 1.82
2912 4014 6.837312 TCCGTCCCATAATATGAGAACATTT 58.163 36.000 1.10 0.00 37.87 2.32
2913 4015 6.433847 TCCGTCCCATAATATGAGAACATT 57.566 37.500 1.10 0.00 37.87 2.71
2914 4016 6.433847 TTCCGTCCCATAATATGAGAACAT 57.566 37.500 1.10 0.00 40.16 2.71
2915 4017 5.221641 CCTTCCGTCCCATAATATGAGAACA 60.222 44.000 1.10 0.00 0.00 3.18
2916 4018 5.011738 TCCTTCCGTCCCATAATATGAGAAC 59.988 44.000 1.10 0.00 0.00 3.01
2917 4019 5.152193 TCCTTCCGTCCCATAATATGAGAA 58.848 41.667 1.10 0.00 0.00 2.87
2918 4020 4.747583 TCCTTCCGTCCCATAATATGAGA 58.252 43.478 1.10 0.00 0.00 3.27
2919 4021 4.528596 ACTCCTTCCGTCCCATAATATGAG 59.471 45.833 1.10 0.00 0.00 2.90
2920 4022 4.489737 ACTCCTTCCGTCCCATAATATGA 58.510 43.478 1.10 0.00 0.00 2.15
2921 4023 4.891992 ACTCCTTCCGTCCCATAATATG 57.108 45.455 0.00 0.00 0.00 1.78
2922 4024 5.900437 TCTACTCCTTCCGTCCCATAATAT 58.100 41.667 0.00 0.00 0.00 1.28
2923 4025 5.163012 ACTCTACTCCTTCCGTCCCATAATA 60.163 44.000 0.00 0.00 0.00 0.98
2924 4026 4.153411 CTCTACTCCTTCCGTCCCATAAT 58.847 47.826 0.00 0.00 0.00 1.28
2925 4027 3.053095 ACTCTACTCCTTCCGTCCCATAA 60.053 47.826 0.00 0.00 0.00 1.90
2926 4028 2.512896 ACTCTACTCCTTCCGTCCCATA 59.487 50.000 0.00 0.00 0.00 2.74
2927 4029 1.288335 ACTCTACTCCTTCCGTCCCAT 59.712 52.381 0.00 0.00 0.00 4.00
2928 4030 0.702902 ACTCTACTCCTTCCGTCCCA 59.297 55.000 0.00 0.00 0.00 4.37
2929 4031 1.104630 CACTCTACTCCTTCCGTCCC 58.895 60.000 0.00 0.00 0.00 4.46
2930 4032 0.456628 GCACTCTACTCCTTCCGTCC 59.543 60.000 0.00 0.00 0.00 4.79
2931 4033 1.174783 TGCACTCTACTCCTTCCGTC 58.825 55.000 0.00 0.00 0.00 4.79
2932 4034 1.272769 GTTGCACTCTACTCCTTCCGT 59.727 52.381 0.00 0.00 0.00 4.69
2933 4035 1.272490 TGTTGCACTCTACTCCTTCCG 59.728 52.381 0.00 0.00 0.00 4.30
2934 4036 3.402628 TTGTTGCACTCTACTCCTTCC 57.597 47.619 0.00 0.00 0.00 3.46
2935 4037 8.894768 ATATATTTGTTGCACTCTACTCCTTC 57.105 34.615 0.00 0.00 0.00 3.46
2936 4038 9.113838 CAATATATTTGTTGCACTCTACTCCTT 57.886 33.333 0.00 0.00 0.00 3.36
2937 4039 7.716998 CCAATATATTTGTTGCACTCTACTCCT 59.283 37.037 0.00 0.00 0.00 3.69
2938 4040 7.041098 CCCAATATATTTGTTGCACTCTACTCC 60.041 40.741 0.00 0.00 0.00 3.85
2939 4041 7.520614 GCCCAATATATTTGTTGCACTCTACTC 60.521 40.741 0.00 0.00 0.00 2.59
2940 4042 6.263168 GCCCAATATATTTGTTGCACTCTACT 59.737 38.462 0.00 0.00 0.00 2.57
2941 4043 6.263168 AGCCCAATATATTTGTTGCACTCTAC 59.737 38.462 0.00 0.00 0.00 2.59
2942 4044 6.262944 CAGCCCAATATATTTGTTGCACTCTA 59.737 38.462 0.00 0.00 0.00 2.43
2943 4045 5.068198 CAGCCCAATATATTTGTTGCACTCT 59.932 40.000 0.00 0.00 0.00 3.24
2948 4050 4.935352 TCCAGCCCAATATATTTGTTGC 57.065 40.909 0.00 0.00 0.00 4.17
2956 4058 6.613699 ACAAGAAATCATCCAGCCCAATATA 58.386 36.000 0.00 0.00 0.00 0.86
2962 4064 5.859205 AATAACAAGAAATCATCCAGCCC 57.141 39.130 0.00 0.00 0.00 5.19
2992 4094 3.443329 TCATTCAATTGCGTACTTGGCAT 59.557 39.130 0.00 0.00 40.62 4.40
3079 4188 5.809562 CACGATTAAAAATGGCAGGCATAAA 59.190 36.000 10.42 3.43 0.00 1.40
3115 4224 4.082354 ACAACTCGAGAAGCGGTAATAACT 60.082 41.667 21.68 0.00 41.33 2.24
3226 4335 1.801771 TCCGGCAATTGAGTGTAAACG 59.198 47.619 10.34 0.09 0.00 3.60
3258 4411 5.804473 TGGCACAATTAAAATATGACAAGCG 59.196 36.000 0.00 0.00 31.92 4.68
3259 4412 7.678226 CTTGGCACAATTAAAATATGACAAGC 58.322 34.615 16.54 0.00 46.36 4.01
3275 4428 9.138046 TGACAAGCATGATAAATCTTGGCACAA 62.138 37.037 11.60 0.00 46.21 3.33
3276 4429 4.463539 ACAAGCATGATAAATCTTGGCACA 59.536 37.500 11.56 0.00 39.97 4.57
3277 4430 5.002464 ACAAGCATGATAAATCTTGGCAC 57.998 39.130 11.56 0.00 39.97 5.01
3278 4431 5.252969 GACAAGCATGATAAATCTTGGCA 57.747 39.130 8.86 0.00 42.52 4.92
3279 4432 5.252969 TGACAAGCATGATAAATCTTGGC 57.747 39.130 11.56 9.51 43.10 4.52
3280 4433 9.976511 AAATATGACAAGCATGATAAATCTTGG 57.023 29.630 11.56 0.00 39.97 3.61
3289 4442 9.037737 GCACAATTTAAATATGACAAGCATGAT 57.962 29.630 13.85 0.00 37.87 2.45
3290 4443 7.492020 GGCACAATTTAAATATGACAAGCATGA 59.508 33.333 13.85 0.00 37.87 3.07
3291 4444 7.278203 TGGCACAATTTAAATATGACAAGCATG 59.722 33.333 15.33 3.80 34.80 4.06
3292 4445 7.329499 TGGCACAATTTAAATATGACAAGCAT 58.671 30.769 15.33 0.00 36.70 3.79
3293 4446 6.695429 TGGCACAATTTAAATATGACAAGCA 58.305 32.000 15.33 0.00 31.92 3.91
3294 4447 7.678226 CTTGGCACAATTTAAATATGACAAGC 58.322 34.615 29.82 19.12 46.36 4.01
3324 4477 2.236893 ACCTCGGGAAGCGGTAAAAATA 59.763 45.455 0.00 0.00 35.90 1.40
3353 4508 8.842280 CATGGCAAATATTTTCCAGCAATTATT 58.158 29.630 21.54 3.25 36.92 1.40
3362 4517 3.940221 GCAAGCATGGCAAATATTTTCCA 59.060 39.130 19.80 19.80 37.84 3.53
3363 4518 4.193865 AGCAAGCATGGCAAATATTTTCC 58.806 39.130 9.67 9.67 37.68 3.13
3395 4551 1.447140 TGTGGCACTTATCGGCGTC 60.447 57.895 19.83 0.00 0.00 5.19
3396 4552 1.740296 GTGTGGCACTTATCGGCGT 60.740 57.895 19.83 0.00 0.00 5.68
3397 4553 2.798501 CGTGTGGCACTTATCGGCG 61.799 63.158 19.83 0.00 31.34 6.46
3398 4554 1.740296 ACGTGTGGCACTTATCGGC 60.740 57.895 19.83 0.00 31.34 5.54
3399 4555 0.669318 ACACGTGTGGCACTTATCGG 60.669 55.000 22.71 13.07 34.19 4.18
3400 4556 0.438445 CACACGTGTGGCACTTATCG 59.562 55.000 35.65 18.40 42.10 2.92
3415 4571 2.048503 ACTCGCTAACGCCCACAC 60.049 61.111 0.00 0.00 39.84 3.82
3417 4573 2.508663 GGACTCGCTAACGCCCAC 60.509 66.667 0.00 0.00 39.84 4.61
3418 4574 4.124351 CGGACTCGCTAACGCCCA 62.124 66.667 0.00 0.00 39.84 5.36
3428 4584 1.234615 AAAATGTGTGGGCGGACTCG 61.235 55.000 0.00 0.00 39.81 4.18
3430 4586 0.467290 ACAAAATGTGTGGGCGGACT 60.467 50.000 0.00 0.00 39.72 3.85
3431 4587 2.037871 ACAAAATGTGTGGGCGGAC 58.962 52.632 0.00 0.00 39.72 4.79
3432 4588 4.589046 ACAAAATGTGTGGGCGGA 57.411 50.000 0.00 0.00 39.72 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.