Multiple sequence alignment - TraesCS7A01G221200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G221200 chr7A 100.000 2725 0 0 1 2725 189431238 189433962 0.000000e+00 5033
1 TraesCS7A01G221200 chr7A 92.124 419 29 2 930 1347 422485330 422485745 3.020000e-164 588
2 TraesCS7A01G221200 chr1D 93.525 1220 61 6 685 1892 11641687 11640474 0.000000e+00 1799
3 TraesCS7A01G221200 chr3A 82.114 1230 177 24 684 1888 698744279 698743068 0.000000e+00 1013
4 TraesCS7A01G221200 chr3A 90.669 568 41 6 685 1243 665978903 665978339 0.000000e+00 745
5 TraesCS7A01G221200 chr3A 89.139 534 45 6 1366 1892 665969352 665968825 0.000000e+00 652
6 TraesCS7A01G221200 chr3A 88.646 229 18 4 1239 1467 665969514 665969294 3.460000e-69 272
7 TraesCS7A01G221200 chr7D 88.369 877 51 26 1889 2725 182327622 182326757 0.000000e+00 1007
8 TraesCS7A01G221200 chr7D 82.906 702 83 19 1 682 182328298 182327614 5.020000e-167 597
9 TraesCS7A01G221200 chr5D 81.944 1224 169 33 685 1890 113489696 113490885 0.000000e+00 989
10 TraesCS7A01G221200 chr3B 81.500 1227 180 28 684 1888 751947683 751946482 0.000000e+00 965
11 TraesCS7A01G221200 chr3B 78.502 614 88 37 685 1283 732425883 732426467 1.990000e-96 363
12 TraesCS7A01G221200 chr3B 81.786 280 45 6 1613 1888 41354404 41354681 2.110000e-56 230
13 TraesCS7A01G221200 chr3B 81.034 290 45 6 1611 1891 732426758 732427046 3.530000e-54 222
14 TraesCS7A01G221200 chr3B 81.071 280 39 8 1613 1890 546204958 546205225 7.640000e-51 211
15 TraesCS7A01G221200 chr7B 87.736 848 72 20 1889 2725 150543871 150543045 0.000000e+00 961
16 TraesCS7A01G221200 chr7B 86.305 701 70 17 1 682 150544556 150543863 0.000000e+00 739
17 TraesCS7A01G221200 chr6D 84.022 895 111 20 687 1561 433499627 433500509 0.000000e+00 832
18 TraesCS7A01G221200 chr6D 92.326 417 32 0 931 1347 454585287 454585703 6.500000e-166 593
19 TraesCS7A01G221200 chr3D 84.887 708 86 10 684 1375 564175386 564174684 0.000000e+00 695
20 TraesCS7A01G221200 chr3D 81.678 715 94 17 1188 1888 564174780 564174089 6.590000e-156 560
21 TraesCS7A01G221200 chr2B 78.689 610 72 38 685 1287 93440437 93439879 1.200000e-93 353
22 TraesCS7A01G221200 chr2B 81.206 282 46 7 1611 1888 93439590 93439312 1.270000e-53 220
23 TraesCS7A01G221200 chr2B 80.576 278 47 7 1615 1888 685820701 685820975 9.890000e-50 207
24 TraesCS7A01G221200 chr2B 84.615 208 28 4 1684 1888 788583464 788583258 1.280000e-48 204
25 TraesCS7A01G221200 chr6B 82.918 281 33 7 1268 1541 285189933 285189661 3.510000e-59 239
26 TraesCS7A01G221200 chr6B 87.500 192 18 4 1704 1889 45538865 45539056 1.640000e-52 217
27 TraesCS7A01G221200 chr6B 81.139 281 37 8 1268 1541 235608552 235608281 7.640000e-51 211
28 TraesCS7A01G221200 chr4B 87.500 192 20 4 1710 1897 635618669 635618478 4.570000e-53 219
29 TraesCS7A01G221200 chr1A 80.565 283 39 10 1613 1890 586927577 586927306 1.280000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G221200 chr7A 189431238 189433962 2724 False 5033.0 5033 100.0000 1 2725 1 chr7A.!!$F1 2724
1 TraesCS7A01G221200 chr1D 11640474 11641687 1213 True 1799.0 1799 93.5250 685 1892 1 chr1D.!!$R1 1207
2 TraesCS7A01G221200 chr3A 698743068 698744279 1211 True 1013.0 1013 82.1140 684 1888 1 chr3A.!!$R2 1204
3 TraesCS7A01G221200 chr3A 665978339 665978903 564 True 745.0 745 90.6690 685 1243 1 chr3A.!!$R1 558
4 TraesCS7A01G221200 chr3A 665968825 665969514 689 True 462.0 652 88.8925 1239 1892 2 chr3A.!!$R3 653
5 TraesCS7A01G221200 chr7D 182326757 182328298 1541 True 802.0 1007 85.6375 1 2725 2 chr7D.!!$R1 2724
6 TraesCS7A01G221200 chr5D 113489696 113490885 1189 False 989.0 989 81.9440 685 1890 1 chr5D.!!$F1 1205
7 TraesCS7A01G221200 chr3B 751946482 751947683 1201 True 965.0 965 81.5000 684 1888 1 chr3B.!!$R1 1204
8 TraesCS7A01G221200 chr3B 732425883 732427046 1163 False 292.5 363 79.7680 685 1891 2 chr3B.!!$F3 1206
9 TraesCS7A01G221200 chr7B 150543045 150544556 1511 True 850.0 961 87.0205 1 2725 2 chr7B.!!$R1 2724
10 TraesCS7A01G221200 chr6D 433499627 433500509 882 False 832.0 832 84.0220 687 1561 1 chr6D.!!$F1 874
11 TraesCS7A01G221200 chr3D 564174089 564175386 1297 True 627.5 695 83.2825 684 1888 2 chr3D.!!$R1 1204
12 TraesCS7A01G221200 chr2B 93439312 93440437 1125 True 286.5 353 79.9475 685 1888 2 chr2B.!!$R2 1203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 295 0.031721 ACGAGACAAAGGACACCGTC 59.968 55.0 0.0 0.0 0.0 4.79 F
307 308 0.032130 CACCGTCCATGTCTATCCCG 59.968 60.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 2063 0.320073 CAAAGGTCGTTGCCCGTCTA 60.320 55.0 0.0 0.00 37.94 2.59 R
2306 2931 0.814410 TTTTCTGTGGCGCCGTGTAA 60.814 50.0 23.9 11.04 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 0.930310 CATGTTCCTACCATGCGACG 59.070 55.000 0.00 0.00 33.90 5.12
193 194 1.040893 TACCATGCGACGGATCTGGT 61.041 55.000 17.18 17.18 42.62 4.00
194 195 1.153369 CCATGCGACGGATCTGGTT 60.153 57.895 6.47 0.00 0.00 3.67
195 196 1.154205 CCATGCGACGGATCTGGTTC 61.154 60.000 6.47 0.00 0.00 3.62
240 241 1.939255 GGCGCTAACGACTCTACTAGT 59.061 52.381 7.64 0.00 46.72 2.57
241 242 2.354199 GGCGCTAACGACTCTACTAGTT 59.646 50.000 7.64 0.00 46.72 2.24
242 243 3.352652 GCGCTAACGACTCTACTAGTTG 58.647 50.000 0.00 0.00 44.27 3.16
243 244 3.352652 CGCTAACGACTCTACTAGTTGC 58.647 50.000 0.00 0.00 42.69 4.17
244 245 3.352652 GCTAACGACTCTACTAGTTGCG 58.647 50.000 0.00 0.83 42.69 4.85
245 246 2.915738 AACGACTCTACTAGTTGCGG 57.084 50.000 0.00 0.00 42.69 5.69
246 247 2.105006 ACGACTCTACTAGTTGCGGA 57.895 50.000 0.00 0.00 42.69 5.54
247 248 2.641305 ACGACTCTACTAGTTGCGGAT 58.359 47.619 0.00 0.00 42.69 4.18
248 249 2.355132 ACGACTCTACTAGTTGCGGATG 59.645 50.000 0.00 0.00 42.69 3.51
249 250 2.287069 CGACTCTACTAGTTGCGGATGG 60.287 54.545 0.00 0.00 39.07 3.51
250 251 1.409427 ACTCTACTAGTTGCGGATGGC 59.591 52.381 0.00 0.00 43.96 4.40
251 252 5.919732 GACTCTACTAGTTGCGGATGGCG 62.920 56.522 0.00 0.00 41.48 5.69
260 261 3.536917 CGGATGGCGTAGGGCTGA 61.537 66.667 10.53 0.00 42.94 4.26
261 262 2.109181 GGATGGCGTAGGGCTGAC 59.891 66.667 10.53 2.03 42.94 3.51
262 263 2.109181 GATGGCGTAGGGCTGACC 59.891 66.667 10.53 0.00 42.94 4.02
272 273 4.728780 GGCTGACCCCCTCATCTA 57.271 61.111 0.00 0.00 0.00 1.98
273 274 2.446512 GGCTGACCCCCTCATCTAG 58.553 63.158 0.00 0.00 0.00 2.43
274 275 0.105453 GGCTGACCCCCTCATCTAGA 60.105 60.000 0.00 0.00 0.00 2.43
275 276 1.692762 GGCTGACCCCCTCATCTAGAA 60.693 57.143 0.00 0.00 0.00 2.10
276 277 1.414550 GCTGACCCCCTCATCTAGAAC 59.585 57.143 0.00 0.00 0.00 3.01
277 278 1.683917 CTGACCCCCTCATCTAGAACG 59.316 57.143 0.00 0.00 0.00 3.95
278 279 1.286849 TGACCCCCTCATCTAGAACGA 59.713 52.381 0.00 0.00 0.00 3.85
279 280 1.957877 GACCCCCTCATCTAGAACGAG 59.042 57.143 13.25 13.25 0.00 4.18
280 281 1.569548 ACCCCCTCATCTAGAACGAGA 59.430 52.381 19.27 5.94 0.00 4.04
281 282 1.957877 CCCCCTCATCTAGAACGAGAC 59.042 57.143 19.27 0.00 0.00 3.36
282 283 2.656002 CCCCTCATCTAGAACGAGACA 58.344 52.381 19.27 0.00 0.00 3.41
283 284 3.024547 CCCCTCATCTAGAACGAGACAA 58.975 50.000 19.27 0.00 0.00 3.18
284 285 3.447586 CCCCTCATCTAGAACGAGACAAA 59.552 47.826 19.27 0.00 0.00 2.83
285 286 4.440802 CCCCTCATCTAGAACGAGACAAAG 60.441 50.000 19.27 6.49 0.00 2.77
286 287 4.440802 CCCTCATCTAGAACGAGACAAAGG 60.441 50.000 19.27 10.51 0.00 3.11
287 288 4.399618 CCTCATCTAGAACGAGACAAAGGA 59.600 45.833 19.27 0.00 29.30 3.36
288 289 5.312120 TCATCTAGAACGAGACAAAGGAC 57.688 43.478 0.00 0.00 0.00 3.85
289 290 4.765339 TCATCTAGAACGAGACAAAGGACA 59.235 41.667 0.00 0.00 0.00 4.02
290 291 4.500603 TCTAGAACGAGACAAAGGACAC 57.499 45.455 0.00 0.00 0.00 3.67
291 292 2.528041 AGAACGAGACAAAGGACACC 57.472 50.000 0.00 0.00 0.00 4.16
292 293 1.137513 GAACGAGACAAAGGACACCG 58.862 55.000 0.00 0.00 0.00 4.94
293 294 0.462789 AACGAGACAAAGGACACCGT 59.537 50.000 0.00 0.00 0.00 4.83
294 295 0.031721 ACGAGACAAAGGACACCGTC 59.968 55.000 0.00 0.00 0.00 4.79
305 306 2.510768 GACACCGTCCATGTCTATCC 57.489 55.000 0.00 0.00 42.68 2.59
306 307 1.068741 GACACCGTCCATGTCTATCCC 59.931 57.143 0.00 0.00 42.68 3.85
307 308 0.032130 CACCGTCCATGTCTATCCCG 59.968 60.000 0.00 0.00 0.00 5.14
308 309 1.006102 CCGTCCATGTCTATCCCGC 60.006 63.158 0.00 0.00 0.00 6.13
309 310 1.464376 CCGTCCATGTCTATCCCGCT 61.464 60.000 0.00 0.00 0.00 5.52
310 311 1.244816 CGTCCATGTCTATCCCGCTA 58.755 55.000 0.00 0.00 0.00 4.26
311 312 1.068472 CGTCCATGTCTATCCCGCTAC 60.068 57.143 0.00 0.00 0.00 3.58
312 313 1.272769 GTCCATGTCTATCCCGCTACC 59.727 57.143 0.00 0.00 0.00 3.18
313 314 0.608640 CCATGTCTATCCCGCTACCC 59.391 60.000 0.00 0.00 0.00 3.69
314 315 0.608640 CATGTCTATCCCGCTACCCC 59.391 60.000 0.00 0.00 0.00 4.95
315 316 0.487772 ATGTCTATCCCGCTACCCCT 59.512 55.000 0.00 0.00 0.00 4.79
316 317 0.263765 TGTCTATCCCGCTACCCCTT 59.736 55.000 0.00 0.00 0.00 3.95
317 318 0.680061 GTCTATCCCGCTACCCCTTG 59.320 60.000 0.00 0.00 0.00 3.61
318 319 0.263765 TCTATCCCGCTACCCCTTGT 59.736 55.000 0.00 0.00 0.00 3.16
319 320 0.680061 CTATCCCGCTACCCCTTGTC 59.320 60.000 0.00 0.00 0.00 3.18
320 321 0.761702 TATCCCGCTACCCCTTGTCC 60.762 60.000 0.00 0.00 0.00 4.02
321 322 3.793888 CCCGCTACCCCTTGTCCC 61.794 72.222 0.00 0.00 0.00 4.46
322 323 4.157120 CCGCTACCCCTTGTCCCG 62.157 72.222 0.00 0.00 0.00 5.14
323 324 4.157120 CGCTACCCCTTGTCCCGG 62.157 72.222 0.00 0.00 0.00 5.73
324 325 3.007323 GCTACCCCTTGTCCCGGT 61.007 66.667 0.00 0.00 0.00 5.28
325 326 2.987125 CTACCCCTTGTCCCGGTG 59.013 66.667 0.00 0.00 0.00 4.94
326 327 1.611261 CTACCCCTTGTCCCGGTGA 60.611 63.158 0.00 0.00 0.00 4.02
327 328 1.152074 TACCCCTTGTCCCGGTGAA 60.152 57.895 0.00 0.00 0.00 3.18
328 329 0.548197 TACCCCTTGTCCCGGTGAAT 60.548 55.000 0.00 0.00 0.00 2.57
329 330 1.378514 CCCCTTGTCCCGGTGAATG 60.379 63.158 0.00 0.00 0.00 2.67
330 331 1.682849 CCCTTGTCCCGGTGAATGA 59.317 57.895 0.00 0.00 0.00 2.57
331 332 0.255890 CCCTTGTCCCGGTGAATGAT 59.744 55.000 0.00 0.00 0.00 2.45
332 333 1.382522 CCTTGTCCCGGTGAATGATG 58.617 55.000 0.00 0.00 0.00 3.07
333 334 1.340017 CCTTGTCCCGGTGAATGATGT 60.340 52.381 0.00 0.00 0.00 3.06
334 335 2.436417 CTTGTCCCGGTGAATGATGTT 58.564 47.619 0.00 0.00 0.00 2.71
335 336 1.819928 TGTCCCGGTGAATGATGTTG 58.180 50.000 0.00 0.00 0.00 3.33
336 337 1.073125 TGTCCCGGTGAATGATGTTGT 59.927 47.619 0.00 0.00 0.00 3.32
337 338 1.737793 GTCCCGGTGAATGATGTTGTC 59.262 52.381 0.00 0.00 0.00 3.18
338 339 1.094785 CCCGGTGAATGATGTTGTCC 58.905 55.000 0.00 0.00 0.00 4.02
339 340 1.094785 CCGGTGAATGATGTTGTCCC 58.905 55.000 0.00 0.00 0.00 4.46
340 341 1.094785 CGGTGAATGATGTTGTCCCC 58.905 55.000 0.00 0.00 0.00 4.81
341 342 1.340017 CGGTGAATGATGTTGTCCCCT 60.340 52.381 0.00 0.00 0.00 4.79
342 343 2.807676 GGTGAATGATGTTGTCCCCTT 58.192 47.619 0.00 0.00 0.00 3.95
343 344 2.493278 GGTGAATGATGTTGTCCCCTTG 59.507 50.000 0.00 0.00 0.00 3.61
344 345 2.493278 GTGAATGATGTTGTCCCCTTGG 59.507 50.000 0.00 0.00 0.00 3.61
345 346 2.378208 TGAATGATGTTGTCCCCTTGGA 59.622 45.455 0.00 0.00 38.75 3.53
346 347 2.814805 ATGATGTTGTCCCCTTGGAG 57.185 50.000 0.00 0.00 42.85 3.86
347 348 0.698238 TGATGTTGTCCCCTTGGAGG 59.302 55.000 0.00 0.00 42.85 4.30
348 349 0.681243 GATGTTGTCCCCTTGGAGGC 60.681 60.000 0.00 0.00 42.85 4.70
349 350 2.035783 GTTGTCCCCTTGGAGGCC 59.964 66.667 0.00 0.00 42.85 5.19
350 351 3.264845 TTGTCCCCTTGGAGGCCC 61.265 66.667 0.00 0.00 42.85 5.80
351 352 4.608514 TGTCCCCTTGGAGGCCCA 62.609 66.667 0.00 0.00 42.85 5.36
352 353 3.732849 GTCCCCTTGGAGGCCCAG 61.733 72.222 0.00 0.00 44.60 4.45
353 354 4.285790 TCCCCTTGGAGGCCCAGT 62.286 66.667 0.00 0.00 44.60 4.00
354 355 2.286121 CCCCTTGGAGGCCCAGTA 60.286 66.667 0.00 0.00 44.60 2.74
355 356 2.378634 CCCCTTGGAGGCCCAGTAG 61.379 68.421 0.00 0.00 44.60 2.57
356 357 2.378634 CCCTTGGAGGCCCAGTAGG 61.379 68.421 0.00 1.31 44.60 3.18
357 358 1.306997 CCTTGGAGGCCCAGTAGGA 60.307 63.158 0.00 0.00 41.15 2.94
358 359 1.341156 CCTTGGAGGCCCAGTAGGAG 61.341 65.000 0.00 0.00 41.15 3.69
359 360 0.618968 CTTGGAGGCCCAGTAGGAGT 60.619 60.000 0.00 0.00 44.60 3.85
360 361 0.617820 TTGGAGGCCCAGTAGGAGTC 60.618 60.000 0.00 0.00 44.60 3.36
361 362 2.128507 GGAGGCCCAGTAGGAGTCG 61.129 68.421 0.00 0.00 38.24 4.18
362 363 2.760385 AGGCCCAGTAGGAGTCGC 60.760 66.667 0.00 0.00 38.24 5.19
363 364 3.075005 GGCCCAGTAGGAGTCGCA 61.075 66.667 0.00 0.00 38.24 5.10
364 365 2.496817 GCCCAGTAGGAGTCGCAG 59.503 66.667 0.00 0.00 38.24 5.18
365 366 2.496817 CCCAGTAGGAGTCGCAGC 59.503 66.667 0.00 0.00 38.24 5.25
366 367 2.496817 CCAGTAGGAGTCGCAGCC 59.503 66.667 0.00 0.00 36.89 4.85
367 368 2.496817 CAGTAGGAGTCGCAGCCC 59.503 66.667 0.00 0.00 0.00 5.19
368 369 3.141488 AGTAGGAGTCGCAGCCCG 61.141 66.667 0.00 0.00 38.61 6.13
369 370 3.138798 GTAGGAGTCGCAGCCCGA 61.139 66.667 0.00 0.00 45.15 5.14
376 377 3.621805 TCGCAGCCCGAGGAAACA 61.622 61.111 0.00 0.00 41.89 2.83
377 378 2.436646 CGCAGCCCGAGGAAACAT 60.437 61.111 0.00 0.00 40.02 2.71
378 379 1.153449 CGCAGCCCGAGGAAACATA 60.153 57.895 0.00 0.00 40.02 2.29
379 380 0.532862 CGCAGCCCGAGGAAACATAT 60.533 55.000 0.00 0.00 40.02 1.78
380 381 1.230324 GCAGCCCGAGGAAACATATC 58.770 55.000 0.00 0.00 0.00 1.63
381 382 1.502231 CAGCCCGAGGAAACATATCG 58.498 55.000 0.00 0.00 36.24 2.92
382 383 1.068588 CAGCCCGAGGAAACATATCGA 59.931 52.381 0.00 0.00 38.72 3.59
383 384 1.971357 AGCCCGAGGAAACATATCGAT 59.029 47.619 2.16 2.16 38.72 3.59
384 385 2.069273 GCCCGAGGAAACATATCGATG 58.931 52.381 8.54 0.00 38.72 3.84
394 395 2.631267 ACATATCGATGTTGTGCTGCA 58.369 42.857 8.54 0.00 44.18 4.41
395 396 2.610833 ACATATCGATGTTGTGCTGCAG 59.389 45.455 10.11 10.11 44.18 4.41
396 397 1.009078 TATCGATGTTGTGCTGCAGC 58.991 50.000 31.89 31.89 42.50 5.25
410 411 4.681421 CAGCACTCTGCCTTCGAA 57.319 55.556 0.00 0.00 46.52 3.71
411 412 2.453843 CAGCACTCTGCCTTCGAAG 58.546 57.895 18.51 18.51 46.52 3.79
412 413 1.375268 AGCACTCTGCCTTCGAAGC 60.375 57.895 19.99 14.98 46.52 3.86
413 414 1.375268 GCACTCTGCCTTCGAAGCT 60.375 57.895 19.99 0.00 37.42 3.74
414 415 1.357991 GCACTCTGCCTTCGAAGCTC 61.358 60.000 19.99 13.30 37.42 4.09
415 416 1.075425 CACTCTGCCTTCGAAGCTCG 61.075 60.000 19.99 7.57 42.10 5.03
416 417 2.125912 TCTGCCTTCGAAGCTCGC 60.126 61.111 19.99 17.39 40.21 5.03
417 418 2.433145 CTGCCTTCGAAGCTCGCA 60.433 61.111 19.99 20.75 40.21 5.10
418 419 2.029288 CTGCCTTCGAAGCTCGCAA 61.029 57.895 22.32 10.90 40.21 4.85
419 420 2.233007 CTGCCTTCGAAGCTCGCAAC 62.233 60.000 22.32 7.19 40.21 4.17
420 421 2.317609 GCCTTCGAAGCTCGCAACA 61.318 57.895 19.99 0.00 40.21 3.33
421 422 1.841663 GCCTTCGAAGCTCGCAACAA 61.842 55.000 19.99 0.00 40.21 2.83
422 423 0.164647 CCTTCGAAGCTCGCAACAAG 59.835 55.000 19.99 0.00 40.21 3.16
423 424 0.164647 CTTCGAAGCTCGCAACAAGG 59.835 55.000 13.09 0.00 40.21 3.61
424 425 0.249699 TTCGAAGCTCGCAACAAGGA 60.250 50.000 0.00 0.00 40.21 3.36
425 426 0.667487 TCGAAGCTCGCAACAAGGAG 60.667 55.000 0.00 0.00 40.21 3.69
426 427 1.630244 CGAAGCTCGCAACAAGGAGG 61.630 60.000 0.00 0.00 31.14 4.30
427 428 1.301677 GAAGCTCGCAACAAGGAGGG 61.302 60.000 0.00 0.00 0.00 4.30
428 429 1.768684 AAGCTCGCAACAAGGAGGGA 61.769 55.000 0.00 0.00 0.00 4.20
429 430 1.302511 GCTCGCAACAAGGAGGGAA 60.303 57.895 0.00 0.00 0.00 3.97
430 431 0.678048 GCTCGCAACAAGGAGGGAAT 60.678 55.000 0.00 0.00 0.00 3.01
431 432 1.826385 CTCGCAACAAGGAGGGAATT 58.174 50.000 0.00 0.00 0.00 2.17
432 433 2.162681 CTCGCAACAAGGAGGGAATTT 58.837 47.619 0.00 0.00 0.00 1.82
433 434 1.885887 TCGCAACAAGGAGGGAATTTG 59.114 47.619 0.00 0.00 0.00 2.32
434 435 1.669795 CGCAACAAGGAGGGAATTTGC 60.670 52.381 0.00 0.00 36.76 3.68
435 436 1.338105 GCAACAAGGAGGGAATTTGCC 60.338 52.381 0.00 0.00 34.57 4.52
436 437 1.067635 CAACAAGGAGGGAATTTGCCG 60.068 52.381 0.85 0.00 30.73 5.69
437 438 1.250840 ACAAGGAGGGAATTTGCCGC 61.251 55.000 1.98 1.98 30.73 6.53
438 439 2.046285 AAGGAGGGAATTTGCCGCG 61.046 57.895 0.00 0.00 30.73 6.46
439 440 2.750237 GGAGGGAATTTGCCGCGT 60.750 61.111 4.92 0.00 30.73 6.01
440 441 2.485122 GAGGGAATTTGCCGCGTG 59.515 61.111 4.92 0.00 30.73 5.34
441 442 2.282180 AGGGAATTTGCCGCGTGT 60.282 55.556 4.92 0.00 30.73 4.49
442 443 1.862602 GAGGGAATTTGCCGCGTGTT 61.863 55.000 4.92 0.00 30.73 3.32
443 444 1.443702 GGGAATTTGCCGCGTGTTC 60.444 57.895 4.92 1.59 0.00 3.18
444 445 1.443702 GGAATTTGCCGCGTGTTCC 60.444 57.895 4.92 7.37 0.00 3.62
445 446 1.795962 GAATTTGCCGCGTGTTCCG 60.796 57.895 4.92 0.00 40.40 4.30
455 456 4.322385 GTGTTCCGCCACGCAACC 62.322 66.667 0.00 0.00 0.00 3.77
456 457 4.858680 TGTTCCGCCACGCAACCA 62.859 61.111 0.00 0.00 0.00 3.67
457 458 4.322385 GTTCCGCCACGCAACCAC 62.322 66.667 0.00 0.00 0.00 4.16
463 464 4.953868 CCACGCAACCACCGACGA 62.954 66.667 0.00 0.00 0.00 4.20
464 465 3.403057 CACGCAACCACCGACGAG 61.403 66.667 0.00 0.00 0.00 4.18
466 467 4.351938 CGCAACCACCGACGAGGA 62.352 66.667 12.38 0.00 45.00 3.71
467 468 2.432628 GCAACCACCGACGAGGAG 60.433 66.667 12.38 6.32 45.00 3.69
468 469 2.432628 CAACCACCGACGAGGAGC 60.433 66.667 12.38 0.00 45.00 4.70
469 470 4.052229 AACCACCGACGAGGAGCG 62.052 66.667 12.38 0.00 45.00 5.03
476 477 2.956964 GACGAGGAGCGGCGATTG 60.957 66.667 12.98 0.00 46.49 2.67
477 478 4.514577 ACGAGGAGCGGCGATTGG 62.515 66.667 12.98 0.00 46.49 3.16
478 479 4.207281 CGAGGAGCGGCGATTGGA 62.207 66.667 12.98 0.00 36.03 3.53
479 480 2.279784 GAGGAGCGGCGATTGGAG 60.280 66.667 12.98 0.00 0.00 3.86
480 481 4.537433 AGGAGCGGCGATTGGAGC 62.537 66.667 12.98 0.00 0.00 4.70
481 482 4.537433 GGAGCGGCGATTGGAGCT 62.537 66.667 12.98 0.00 43.33 4.09
483 484 4.880537 AGCGGCGATTGGAGCTCG 62.881 66.667 12.98 0.00 34.48 5.03
485 486 3.257561 CGGCGATTGGAGCTCGTG 61.258 66.667 7.83 0.00 38.37 4.35
486 487 2.184322 GGCGATTGGAGCTCGTGA 59.816 61.111 7.83 0.00 38.37 4.35
487 488 1.880340 GGCGATTGGAGCTCGTGAG 60.880 63.158 7.83 0.00 38.37 3.51
488 489 1.153745 GCGATTGGAGCTCGTGAGT 60.154 57.895 7.83 0.00 38.37 3.41
489 490 1.416813 GCGATTGGAGCTCGTGAGTG 61.417 60.000 7.83 0.00 38.37 3.51
497 498 3.374402 CTCGTGAGTGCGACCCCT 61.374 66.667 0.00 0.00 36.80 4.79
498 499 2.034532 TCGTGAGTGCGACCCCTA 59.965 61.111 0.00 0.00 35.83 3.53
499 500 1.379443 TCGTGAGTGCGACCCCTAT 60.379 57.895 0.00 0.00 35.83 2.57
500 501 1.226974 CGTGAGTGCGACCCCTATG 60.227 63.158 0.00 0.00 0.00 2.23
501 502 1.521681 GTGAGTGCGACCCCTATGC 60.522 63.158 0.00 0.00 0.00 3.14
502 503 1.685765 TGAGTGCGACCCCTATGCT 60.686 57.895 0.00 0.00 0.00 3.79
503 504 1.264749 TGAGTGCGACCCCTATGCTT 61.265 55.000 0.00 0.00 0.00 3.91
504 505 0.750850 GAGTGCGACCCCTATGCTTA 59.249 55.000 0.00 0.00 0.00 3.09
505 506 0.464452 AGTGCGACCCCTATGCTTAC 59.536 55.000 0.00 0.00 0.00 2.34
506 507 0.532196 GTGCGACCCCTATGCTTACC 60.532 60.000 0.00 0.00 0.00 2.85
507 508 0.689745 TGCGACCCCTATGCTTACCT 60.690 55.000 0.00 0.00 0.00 3.08
508 509 0.033642 GCGACCCCTATGCTTACCTC 59.966 60.000 0.00 0.00 0.00 3.85
509 510 1.410004 CGACCCCTATGCTTACCTCA 58.590 55.000 0.00 0.00 0.00 3.86
510 511 1.760613 CGACCCCTATGCTTACCTCAA 59.239 52.381 0.00 0.00 0.00 3.02
511 512 2.368875 CGACCCCTATGCTTACCTCAAT 59.631 50.000 0.00 0.00 0.00 2.57
512 513 3.744660 GACCCCTATGCTTACCTCAATG 58.255 50.000 0.00 0.00 0.00 2.82
513 514 3.391296 GACCCCTATGCTTACCTCAATGA 59.609 47.826 0.00 0.00 0.00 2.57
514 515 3.983410 ACCCCTATGCTTACCTCAATGAT 59.017 43.478 0.00 0.00 0.00 2.45
515 516 4.202503 ACCCCTATGCTTACCTCAATGATG 60.203 45.833 0.00 0.00 0.00 3.07
516 517 4.202503 CCCCTATGCTTACCTCAATGATGT 60.203 45.833 0.00 0.00 0.00 3.06
517 518 4.999950 CCCTATGCTTACCTCAATGATGTC 59.000 45.833 0.00 0.00 0.00 3.06
518 519 5.221803 CCCTATGCTTACCTCAATGATGTCT 60.222 44.000 0.00 0.00 0.00 3.41
519 520 5.931146 CCTATGCTTACCTCAATGATGTCTC 59.069 44.000 0.00 0.00 0.00 3.36
520 521 4.142609 TGCTTACCTCAATGATGTCTCC 57.857 45.455 0.00 0.00 0.00 3.71
521 522 3.126831 GCTTACCTCAATGATGTCTCCG 58.873 50.000 0.00 0.00 0.00 4.63
522 523 3.181475 GCTTACCTCAATGATGTCTCCGA 60.181 47.826 0.00 0.00 0.00 4.55
523 524 4.615949 CTTACCTCAATGATGTCTCCGAG 58.384 47.826 0.00 0.00 0.00 4.63
524 525 1.759445 ACCTCAATGATGTCTCCGAGG 59.241 52.381 0.00 0.00 44.57 4.63
525 526 2.034878 CCTCAATGATGTCTCCGAGGA 58.965 52.381 0.00 0.00 42.18 3.71
526 527 2.035704 CCTCAATGATGTCTCCGAGGAG 59.964 54.545 12.78 12.78 42.18 3.69
527 528 2.034878 TCAATGATGTCTCCGAGGAGG 58.965 52.381 18.16 0.98 42.20 4.30
528 529 1.069823 CAATGATGTCTCCGAGGAGGG 59.930 57.143 18.16 0.00 42.20 4.30
529 530 0.470833 ATGATGTCTCCGAGGAGGGG 60.471 60.000 18.16 0.00 43.85 4.79
530 531 1.834822 GATGTCTCCGAGGAGGGGG 60.835 68.421 18.16 0.00 42.27 5.40
531 532 2.299727 GATGTCTCCGAGGAGGGGGA 62.300 65.000 18.16 0.00 42.27 4.81
534 535 3.430497 CTCCGAGGAGGGGGAGGA 61.430 72.222 11.22 0.00 44.94 3.71
535 536 3.430497 TCCGAGGAGGGGGAGGAG 61.430 72.222 0.00 0.00 41.52 3.69
536 537 4.548513 CCGAGGAGGGGGAGGAGG 62.549 77.778 0.00 0.00 35.97 4.30
537 538 3.430497 CGAGGAGGGGGAGGAGGA 61.430 72.222 0.00 0.00 0.00 3.71
538 539 2.612251 GAGGAGGGGGAGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
539 540 3.039526 AGGAGGGGGAGGAGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
540 541 3.036959 GGAGGGGGAGGAGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
541 542 2.647949 GGAGGGGGAGGAGGAGGAA 61.648 68.421 0.00 0.00 0.00 3.36
542 543 1.635051 GAGGGGGAGGAGGAGGAAT 59.365 63.158 0.00 0.00 0.00 3.01
543 544 0.868186 GAGGGGGAGGAGGAGGAATA 59.132 60.000 0.00 0.00 0.00 1.75
544 545 1.439143 GAGGGGGAGGAGGAGGAATAT 59.561 57.143 0.00 0.00 0.00 1.28
545 546 1.883387 AGGGGGAGGAGGAGGAATATT 59.117 52.381 0.00 0.00 0.00 1.28
546 547 2.157926 AGGGGGAGGAGGAGGAATATTC 60.158 54.545 6.93 6.93 0.00 1.75
547 548 1.903183 GGGGAGGAGGAGGAATATTCG 59.097 57.143 9.32 0.00 0.00 3.34
548 549 2.492940 GGGGAGGAGGAGGAATATTCGA 60.493 54.545 9.32 0.00 0.00 3.71
549 550 2.829120 GGGAGGAGGAGGAATATTCGAG 59.171 54.545 9.32 0.00 0.00 4.04
550 551 2.829120 GGAGGAGGAGGAATATTCGAGG 59.171 54.545 9.32 0.00 0.00 4.63
551 552 3.500654 GGAGGAGGAGGAATATTCGAGGA 60.501 52.174 9.32 0.00 0.00 3.71
552 553 4.153411 GAGGAGGAGGAATATTCGAGGAA 58.847 47.826 9.32 0.00 0.00 3.36
553 554 4.156477 AGGAGGAGGAATATTCGAGGAAG 58.844 47.826 9.32 0.00 0.00 3.46
554 555 4.140900 AGGAGGAGGAATATTCGAGGAAGA 60.141 45.833 9.32 0.00 0.00 2.87
555 556 4.589374 GGAGGAGGAATATTCGAGGAAGAA 59.411 45.833 9.32 0.00 34.31 2.52
556 557 5.279256 GGAGGAGGAATATTCGAGGAAGAAG 60.279 48.000 9.32 0.00 33.19 2.85
557 558 5.459505 AGGAGGAATATTCGAGGAAGAAGA 58.540 41.667 9.32 0.00 33.19 2.87
558 559 5.900123 AGGAGGAATATTCGAGGAAGAAGAA 59.100 40.000 9.32 0.00 33.19 2.52
559 560 6.041523 AGGAGGAATATTCGAGGAAGAAGAAG 59.958 42.308 9.32 0.00 33.19 2.85
560 561 6.041069 GGAGGAATATTCGAGGAAGAAGAAGA 59.959 42.308 9.32 0.00 33.19 2.87
561 562 7.049799 AGGAATATTCGAGGAAGAAGAAGAG 57.950 40.000 9.32 0.00 33.19 2.85
562 563 6.041523 AGGAATATTCGAGGAAGAAGAAGAGG 59.958 42.308 9.32 0.00 33.19 3.69
563 564 6.041069 GGAATATTCGAGGAAGAAGAAGAGGA 59.959 42.308 9.32 0.00 33.19 3.71
564 565 4.729227 ATTCGAGGAAGAAGAAGAGGAC 57.271 45.455 0.00 0.00 33.19 3.85
565 566 2.448453 TCGAGGAAGAAGAAGAGGACC 58.552 52.381 0.00 0.00 0.00 4.46
566 567 2.171840 CGAGGAAGAAGAAGAGGACCA 58.828 52.381 0.00 0.00 0.00 4.02
567 568 2.763448 CGAGGAAGAAGAAGAGGACCAT 59.237 50.000 0.00 0.00 0.00 3.55
568 569 3.430098 CGAGGAAGAAGAAGAGGACCATG 60.430 52.174 0.00 0.00 0.00 3.66
569 570 3.772025 GAGGAAGAAGAAGAGGACCATGA 59.228 47.826 0.00 0.00 0.00 3.07
570 571 3.517500 AGGAAGAAGAAGAGGACCATGAC 59.482 47.826 0.00 0.00 0.00 3.06
571 572 3.261897 GGAAGAAGAAGAGGACCATGACA 59.738 47.826 0.00 0.00 0.00 3.58
572 573 4.263068 GGAAGAAGAAGAGGACCATGACAA 60.263 45.833 0.00 0.00 0.00 3.18
573 574 4.278975 AGAAGAAGAGGACCATGACAAC 57.721 45.455 0.00 0.00 0.00 3.32
574 575 3.648067 AGAAGAAGAGGACCATGACAACA 59.352 43.478 0.00 0.00 0.00 3.33
575 576 3.692257 AGAAGAGGACCATGACAACAG 57.308 47.619 0.00 0.00 0.00 3.16
576 577 2.079925 GAAGAGGACCATGACAACAGC 58.920 52.381 0.00 0.00 0.00 4.40
577 578 0.036952 AGAGGACCATGACAACAGCG 60.037 55.000 0.00 0.00 0.00 5.18
578 579 0.037326 GAGGACCATGACAACAGCGA 60.037 55.000 0.00 0.00 0.00 4.93
579 580 0.396435 AGGACCATGACAACAGCGAA 59.604 50.000 0.00 0.00 0.00 4.70
580 581 0.798776 GGACCATGACAACAGCGAAG 59.201 55.000 0.00 0.00 0.00 3.79
581 582 1.608025 GGACCATGACAACAGCGAAGA 60.608 52.381 0.00 0.00 0.00 2.87
582 583 1.728971 GACCATGACAACAGCGAAGAG 59.271 52.381 0.00 0.00 0.00 2.85
583 584 1.081892 CCATGACAACAGCGAAGAGG 58.918 55.000 0.00 0.00 0.00 3.69
584 585 1.338105 CCATGACAACAGCGAAGAGGA 60.338 52.381 0.00 0.00 0.00 3.71
585 586 1.728971 CATGACAACAGCGAAGAGGAC 59.271 52.381 0.00 0.00 0.00 3.85
586 587 0.318699 TGACAACAGCGAAGAGGACG 60.319 55.000 0.00 0.00 0.00 4.79
587 588 0.039437 GACAACAGCGAAGAGGACGA 60.039 55.000 0.00 0.00 0.00 4.20
588 589 0.387929 ACAACAGCGAAGAGGACGAA 59.612 50.000 0.00 0.00 0.00 3.85
589 590 1.063806 CAACAGCGAAGAGGACGAAG 58.936 55.000 0.00 0.00 0.00 3.79
590 591 0.959553 AACAGCGAAGAGGACGAAGA 59.040 50.000 0.00 0.00 0.00 2.87
591 592 0.241481 ACAGCGAAGAGGACGAAGAC 59.759 55.000 0.00 0.00 0.00 3.01
592 593 0.523966 CAGCGAAGAGGACGAAGACT 59.476 55.000 0.00 0.00 0.00 3.24
593 594 1.738350 CAGCGAAGAGGACGAAGACTA 59.262 52.381 0.00 0.00 0.00 2.59
594 595 2.011222 AGCGAAGAGGACGAAGACTAG 58.989 52.381 0.00 0.00 0.00 2.57
595 596 2.008329 GCGAAGAGGACGAAGACTAGA 58.992 52.381 0.00 0.00 0.00 2.43
596 597 2.223089 GCGAAGAGGACGAAGACTAGAC 60.223 54.545 0.00 0.00 0.00 2.59
597 598 2.029486 CGAAGAGGACGAAGACTAGACG 59.971 54.545 0.00 0.00 0.00 4.18
598 599 3.260740 GAAGAGGACGAAGACTAGACGA 58.739 50.000 0.00 0.00 0.00 4.20
599 600 2.620242 AGAGGACGAAGACTAGACGAC 58.380 52.381 0.00 0.00 0.00 4.34
600 601 2.028294 AGAGGACGAAGACTAGACGACA 60.028 50.000 0.00 0.00 0.00 4.35
601 602 2.075338 AGGACGAAGACTAGACGACAC 58.925 52.381 0.00 0.00 0.00 3.67
602 603 1.130186 GGACGAAGACTAGACGACACC 59.870 57.143 0.00 1.37 0.00 4.16
603 604 0.795085 ACGAAGACTAGACGACACCG 59.205 55.000 0.00 0.00 42.50 4.94
604 605 0.096628 CGAAGACTAGACGACACCGG 59.903 60.000 0.00 0.00 40.78 5.28
605 606 0.179169 GAAGACTAGACGACACCGGC 60.179 60.000 0.00 0.00 46.21 6.13
613 614 3.740397 CGACACCGGCCACGACTA 61.740 66.667 0.00 0.00 44.60 2.59
614 615 2.181021 GACACCGGCCACGACTAG 59.819 66.667 0.00 0.00 44.60 2.57
615 616 2.599578 ACACCGGCCACGACTAGT 60.600 61.111 0.00 0.00 44.60 2.57
626 627 3.677190 CACGACTAGTGTAGGTAGCAG 57.323 52.381 0.00 0.00 45.51 4.24
627 628 3.008330 CACGACTAGTGTAGGTAGCAGT 58.992 50.000 0.00 0.00 45.51 4.40
628 629 4.186926 CACGACTAGTGTAGGTAGCAGTA 58.813 47.826 0.00 0.00 45.51 2.74
629 630 4.815308 CACGACTAGTGTAGGTAGCAGTAT 59.185 45.833 0.00 0.00 45.51 2.12
630 631 5.296283 CACGACTAGTGTAGGTAGCAGTATT 59.704 44.000 0.00 0.00 45.51 1.89
631 632 5.526846 ACGACTAGTGTAGGTAGCAGTATTC 59.473 44.000 0.00 0.00 0.00 1.75
632 633 5.759273 CGACTAGTGTAGGTAGCAGTATTCT 59.241 44.000 0.00 0.00 0.00 2.40
633 634 6.260493 CGACTAGTGTAGGTAGCAGTATTCTT 59.740 42.308 0.00 0.00 0.00 2.52
634 635 7.336161 ACTAGTGTAGGTAGCAGTATTCTTG 57.664 40.000 0.00 0.00 0.00 3.02
635 636 5.599999 AGTGTAGGTAGCAGTATTCTTGG 57.400 43.478 0.00 0.00 0.00 3.61
636 637 5.269991 AGTGTAGGTAGCAGTATTCTTGGA 58.730 41.667 0.00 0.00 0.00 3.53
637 638 5.720041 AGTGTAGGTAGCAGTATTCTTGGAA 59.280 40.000 0.00 0.00 0.00 3.53
638 639 6.212791 AGTGTAGGTAGCAGTATTCTTGGAAA 59.787 38.462 0.00 0.00 0.00 3.13
639 640 7.048512 GTGTAGGTAGCAGTATTCTTGGAAAT 58.951 38.462 0.00 0.00 0.00 2.17
640 641 7.011482 GTGTAGGTAGCAGTATTCTTGGAAATG 59.989 40.741 0.00 0.00 0.00 2.32
641 642 6.067217 AGGTAGCAGTATTCTTGGAAATGT 57.933 37.500 0.00 0.00 0.00 2.71
642 643 6.116126 AGGTAGCAGTATTCTTGGAAATGTC 58.884 40.000 0.00 0.00 0.00 3.06
643 644 5.006746 GGTAGCAGTATTCTTGGAAATGTCG 59.993 44.000 0.00 0.00 0.00 4.35
644 645 3.375299 AGCAGTATTCTTGGAAATGTCGC 59.625 43.478 0.00 0.00 0.00 5.19
645 646 3.375299 GCAGTATTCTTGGAAATGTCGCT 59.625 43.478 0.00 0.00 0.00 4.93
646 647 4.570772 GCAGTATTCTTGGAAATGTCGCTA 59.429 41.667 0.00 0.00 0.00 4.26
647 648 5.064707 GCAGTATTCTTGGAAATGTCGCTAA 59.935 40.000 0.00 0.00 0.00 3.09
648 649 6.709643 CAGTATTCTTGGAAATGTCGCTAAG 58.290 40.000 0.00 0.00 0.00 2.18
649 650 6.313905 CAGTATTCTTGGAAATGTCGCTAAGT 59.686 38.462 0.00 0.00 0.00 2.24
650 651 5.803020 ATTCTTGGAAATGTCGCTAAGTC 57.197 39.130 0.00 0.00 0.00 3.01
651 652 3.250744 TCTTGGAAATGTCGCTAAGTCG 58.749 45.455 0.00 0.00 0.00 4.18
652 653 1.355971 TGGAAATGTCGCTAAGTCGC 58.644 50.000 0.00 0.00 0.00 5.19
653 654 1.337354 TGGAAATGTCGCTAAGTCGCA 60.337 47.619 0.00 0.00 0.00 5.10
654 655 1.730064 GGAAATGTCGCTAAGTCGCAA 59.270 47.619 0.00 0.00 0.00 4.85
655 656 2.158841 GGAAATGTCGCTAAGTCGCAAA 59.841 45.455 0.00 0.00 0.00 3.68
656 657 3.181510 GGAAATGTCGCTAAGTCGCAAAT 60.182 43.478 0.00 0.00 0.00 2.32
657 658 4.403453 GAAATGTCGCTAAGTCGCAAATT 58.597 39.130 0.00 0.00 0.00 1.82
658 659 5.446741 GGAAATGTCGCTAAGTCGCAAATTA 60.447 40.000 0.00 0.00 0.00 1.40
659 660 5.734855 AATGTCGCTAAGTCGCAAATTAT 57.265 34.783 0.00 0.00 0.00 1.28
660 661 6.838198 AATGTCGCTAAGTCGCAAATTATA 57.162 33.333 0.00 0.00 0.00 0.98
661 662 7.421530 AATGTCGCTAAGTCGCAAATTATAT 57.578 32.000 0.00 0.00 0.00 0.86
662 663 6.210396 TGTCGCTAAGTCGCAAATTATATG 57.790 37.500 0.00 0.00 0.00 1.78
663 664 5.751509 TGTCGCTAAGTCGCAAATTATATGT 59.248 36.000 0.00 0.00 0.00 2.29
664 665 6.919115 TGTCGCTAAGTCGCAAATTATATGTA 59.081 34.615 0.00 0.00 0.00 2.29
665 666 7.435784 TGTCGCTAAGTCGCAAATTATATGTAA 59.564 33.333 0.00 0.00 0.00 2.41
666 667 8.270799 GTCGCTAAGTCGCAAATTATATGTAAA 58.729 33.333 0.00 0.00 0.00 2.01
667 668 8.819015 TCGCTAAGTCGCAAATTATATGTAAAA 58.181 29.630 0.00 0.00 0.00 1.52
668 669 9.594038 CGCTAAGTCGCAAATTATATGTAAAAT 57.406 29.630 0.00 0.00 0.00 1.82
672 673 8.987599 AGTCGCAAATTATATGTAAAATGACG 57.012 30.769 2.97 5.55 0.00 4.35
673 674 7.586300 AGTCGCAAATTATATGTAAAATGACGC 59.414 33.333 2.97 0.00 0.00 5.19
674 675 7.374754 GTCGCAAATTATATGTAAAATGACGCA 59.625 33.333 2.97 0.00 0.00 5.24
675 676 8.073167 TCGCAAATTATATGTAAAATGACGCAT 58.927 29.630 2.97 0.00 0.00 4.73
676 677 8.689954 CGCAAATTATATGTAAAATGACGCATT 58.310 29.630 0.09 0.09 35.39 3.56
770 779 4.650734 TGCAGAAAACACCATGTCTATCA 58.349 39.130 0.00 0.00 0.00 2.15
846 855 0.466124 GACAGATGGGACCCACTAGC 59.534 60.000 17.78 5.86 35.80 3.42
859 868 0.538584 CACTAGCCAGGCTGATGTGA 59.461 55.000 25.59 0.99 40.10 3.58
972 996 2.675056 CGAACCAGCAGAGCAGCAC 61.675 63.158 0.00 0.00 36.85 4.40
1038 1069 4.152526 CGAAATTCGTCGCAATTAACCAA 58.847 39.130 7.29 0.00 34.72 3.67
1044 1075 2.993899 CGTCGCAATTAACCAACTCTCT 59.006 45.455 0.00 0.00 0.00 3.10
1046 1077 3.994392 GTCGCAATTAACCAACTCTCTCA 59.006 43.478 0.00 0.00 0.00 3.27
1056 1087 2.632028 CCAACTCTCTCATCGGATCCAT 59.368 50.000 13.41 1.55 0.00 3.41
1103 1140 1.415659 CATCTCGGATTCCTGCTCCTT 59.584 52.381 0.30 0.00 0.00 3.36
1114 1151 4.361253 GCTCCTTTGTCACGAGCA 57.639 55.556 9.75 0.00 46.63 4.26
1155 1205 0.188587 TCCTGGATGAGGTAGGCGAT 59.811 55.000 0.00 0.00 43.37 4.58
1168 1218 1.451927 GGCGATCCCAGTGATGCAA 60.452 57.895 0.00 0.00 32.41 4.08
1183 1233 2.046023 CAATCGCCCTGGAGTGCA 60.046 61.111 0.00 0.00 0.00 4.57
1201 1251 4.379143 CGCACGACGTCCTCGACA 62.379 66.667 10.58 0.00 46.14 4.35
1258 1308 4.394712 CGGCGTCCCCTGCTTTCT 62.395 66.667 0.00 0.00 0.00 2.52
1578 2172 2.352127 GCTTGGTGAACTGAGATTTGGC 60.352 50.000 0.00 0.00 0.00 4.52
1776 2378 4.301027 GAGCCCGATCCGCCGATT 62.301 66.667 0.00 0.00 0.00 3.34
1976 2586 4.219725 GCTTAAAGTGCCCCTACAAAATCA 59.780 41.667 0.00 0.00 0.00 2.57
1988 2598 7.393216 CCCCTACAAAATCAATGAAAATGGAA 58.607 34.615 0.00 0.00 0.00 3.53
1989 2599 7.882271 CCCCTACAAAATCAATGAAAATGGAAA 59.118 33.333 0.00 0.00 0.00 3.13
2013 2623 5.483685 AAACAAAGAATTTTAGGGAGGCC 57.516 39.130 0.00 0.00 35.03 5.19
2024 2634 2.362375 GGAGGCCGCCATTTTGGA 60.362 61.111 22.24 0.00 40.96 3.53
2080 2691 9.261180 CCTTCATATCTAACGTGTTATGACAAT 57.739 33.333 0.00 0.00 37.57 2.71
2176 2787 2.729194 AGAGCTGGTCTTAGACGTCAT 58.271 47.619 19.50 5.54 32.65 3.06
2210 2821 7.346751 AGCTCCAGTTTTTCACAATCTTTTA 57.653 32.000 0.00 0.00 0.00 1.52
2306 2931 0.179018 ACAAACAGAGGAAAGCCGCT 60.179 50.000 0.00 0.00 46.04 5.52
2337 2962 3.303791 GCCACAGAAAACGTTACTTCAGG 60.304 47.826 13.63 12.40 0.00 3.86
2498 3157 2.811317 GCTCAAGCGACTCACGGG 60.811 66.667 0.00 0.00 42.83 5.28
2499 3158 2.962569 CTCAAGCGACTCACGGGA 59.037 61.111 0.00 0.00 42.83 5.14
2500 3159 1.444553 CTCAAGCGACTCACGGGAC 60.445 63.158 0.00 0.00 42.83 4.46
2501 3160 1.867919 CTCAAGCGACTCACGGGACT 61.868 60.000 0.00 0.00 42.83 3.85
2502 3161 1.734477 CAAGCGACTCACGGGACTG 60.734 63.158 0.00 0.00 42.83 3.51
2503 3162 2.201022 AAGCGACTCACGGGACTGT 61.201 57.895 0.00 0.00 42.83 3.55
2504 3163 2.126424 GCGACTCACGGGACTGTC 60.126 66.667 0.00 0.00 42.83 3.51
2505 3164 2.176055 CGACTCACGGGACTGTCG 59.824 66.667 14.04 14.04 44.41 4.35
2506 3165 2.126424 GACTCACGGGACTGTCGC 60.126 66.667 14.23 14.23 0.00 5.19
2507 3166 2.910479 ACTCACGGGACTGTCGCA 60.910 61.111 22.32 4.69 0.00 5.10
2508 3167 2.126307 CTCACGGGACTGTCGCAG 60.126 66.667 22.32 16.93 37.52 5.18
2509 3168 3.633094 CTCACGGGACTGTCGCAGG 62.633 68.421 22.32 14.12 35.51 4.85
2518 3177 2.049156 TGTCGCAGGCAAGTCTCG 60.049 61.111 0.00 0.00 42.02 4.04
2519 3178 3.482783 GTCGCAGGCAAGTCTCGC 61.483 66.667 0.00 0.00 0.00 5.03
2550 3209 6.384305 ACCTACTCCTAGATAAACATGCAACT 59.616 38.462 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.872858 GCGTGAGAAGGATGGATTTACC 59.127 50.000 0.00 0.00 39.54 2.85
34 35 9.309516 TCTATACTACAATAAAGTTTGAAGGCG 57.690 33.333 0.00 0.00 0.00 5.52
156 157 4.980573 TGGTAGGAACATGCAACTAGTTT 58.019 39.130 5.07 0.00 0.00 2.66
169 170 0.104304 ATCCGTCGCATGGTAGGAAC 59.896 55.000 0.00 0.00 34.35 3.62
185 186 1.452108 CCCCGCAAGAACCAGATCC 60.452 63.158 0.00 0.00 43.02 3.36
193 194 1.037030 GCATTGGATCCCCGCAAGAA 61.037 55.000 9.90 0.00 43.02 2.52
194 195 1.453745 GCATTGGATCCCCGCAAGA 60.454 57.895 9.90 0.00 43.02 3.02
195 196 1.039233 AAGCATTGGATCCCCGCAAG 61.039 55.000 9.90 0.00 34.29 4.01
240 241 4.849310 GCCCTACGCCATCCGCAA 62.849 66.667 0.00 0.00 41.76 4.85
243 244 3.536917 TCAGCCCTACGCCATCCG 61.537 66.667 0.00 0.00 44.21 4.18
244 245 2.109181 GTCAGCCCTACGCCATCC 59.891 66.667 0.00 0.00 38.78 3.51
245 246 2.109181 GGTCAGCCCTACGCCATC 59.891 66.667 0.00 0.00 38.78 3.51
255 256 0.105453 TCTAGATGAGGGGGTCAGCC 60.105 60.000 0.00 0.00 43.08 4.85
256 257 1.414550 GTTCTAGATGAGGGGGTCAGC 59.585 57.143 0.00 0.00 42.33 4.26
257 258 1.683917 CGTTCTAGATGAGGGGGTCAG 59.316 57.143 0.00 0.00 39.07 3.51
258 259 1.286849 TCGTTCTAGATGAGGGGGTCA 59.713 52.381 0.00 0.00 40.38 4.02
259 260 1.957877 CTCGTTCTAGATGAGGGGGTC 59.042 57.143 12.53 0.00 37.68 4.46
260 261 1.569548 TCTCGTTCTAGATGAGGGGGT 59.430 52.381 17.73 0.00 41.02 4.95
261 262 1.957877 GTCTCGTTCTAGATGAGGGGG 59.042 57.143 17.73 0.00 41.02 5.40
262 263 2.656002 TGTCTCGTTCTAGATGAGGGG 58.344 52.381 17.73 1.14 41.02 4.79
263 264 4.440802 CCTTTGTCTCGTTCTAGATGAGGG 60.441 50.000 17.73 9.91 41.02 4.30
264 265 4.399618 TCCTTTGTCTCGTTCTAGATGAGG 59.600 45.833 17.73 6.37 41.02 3.86
265 266 5.106118 TGTCCTTTGTCTCGTTCTAGATGAG 60.106 44.000 13.70 13.70 41.86 2.90
266 267 4.765339 TGTCCTTTGTCTCGTTCTAGATGA 59.235 41.667 0.00 0.00 0.00 2.92
267 268 4.859798 GTGTCCTTTGTCTCGTTCTAGATG 59.140 45.833 0.00 0.00 0.00 2.90
268 269 4.082136 GGTGTCCTTTGTCTCGTTCTAGAT 60.082 45.833 0.00 0.00 0.00 1.98
269 270 3.255149 GGTGTCCTTTGTCTCGTTCTAGA 59.745 47.826 0.00 0.00 0.00 2.43
270 271 3.576648 GGTGTCCTTTGTCTCGTTCTAG 58.423 50.000 0.00 0.00 0.00 2.43
271 272 2.030540 CGGTGTCCTTTGTCTCGTTCTA 60.031 50.000 0.00 0.00 0.00 2.10
272 273 1.269621 CGGTGTCCTTTGTCTCGTTCT 60.270 52.381 0.00 0.00 0.00 3.01
273 274 1.137513 CGGTGTCCTTTGTCTCGTTC 58.862 55.000 0.00 0.00 0.00 3.95
274 275 0.462789 ACGGTGTCCTTTGTCTCGTT 59.537 50.000 0.00 0.00 0.00 3.85
275 276 0.031721 GACGGTGTCCTTTGTCTCGT 59.968 55.000 0.00 0.00 0.00 4.18
276 277 2.810486 GACGGTGTCCTTTGTCTCG 58.190 57.895 0.00 0.00 0.00 4.04
286 287 1.068741 GGGATAGACATGGACGGTGTC 59.931 57.143 0.00 0.00 44.85 3.67
287 288 1.120530 GGGATAGACATGGACGGTGT 58.879 55.000 0.00 0.00 0.00 4.16
288 289 0.032130 CGGGATAGACATGGACGGTG 59.968 60.000 0.00 0.00 0.00 4.94
289 290 1.745320 GCGGGATAGACATGGACGGT 61.745 60.000 0.00 0.00 0.00 4.83
290 291 1.006102 GCGGGATAGACATGGACGG 60.006 63.158 0.00 0.00 0.00 4.79
291 292 1.068472 GTAGCGGGATAGACATGGACG 60.068 57.143 0.00 0.00 0.00 4.79
292 293 1.272769 GGTAGCGGGATAGACATGGAC 59.727 57.143 0.00 0.00 0.00 4.02
293 294 1.629043 GGTAGCGGGATAGACATGGA 58.371 55.000 0.00 0.00 0.00 3.41
294 295 0.608640 GGGTAGCGGGATAGACATGG 59.391 60.000 0.00 0.00 0.00 3.66
295 296 0.608640 GGGGTAGCGGGATAGACATG 59.391 60.000 0.00 0.00 0.00 3.21
296 297 0.487772 AGGGGTAGCGGGATAGACAT 59.512 55.000 0.00 0.00 0.00 3.06
297 298 0.263765 AAGGGGTAGCGGGATAGACA 59.736 55.000 0.00 0.00 0.00 3.41
298 299 0.680061 CAAGGGGTAGCGGGATAGAC 59.320 60.000 0.00 0.00 0.00 2.59
299 300 0.263765 ACAAGGGGTAGCGGGATAGA 59.736 55.000 0.00 0.00 0.00 1.98
300 301 0.680061 GACAAGGGGTAGCGGGATAG 59.320 60.000 0.00 0.00 0.00 2.08
301 302 0.761702 GGACAAGGGGTAGCGGGATA 60.762 60.000 0.00 0.00 0.00 2.59
302 303 2.070650 GGACAAGGGGTAGCGGGAT 61.071 63.158 0.00 0.00 0.00 3.85
303 304 2.686106 GGACAAGGGGTAGCGGGA 60.686 66.667 0.00 0.00 0.00 5.14
304 305 3.793888 GGGACAAGGGGTAGCGGG 61.794 72.222 0.00 0.00 0.00 6.13
305 306 4.157120 CGGGACAAGGGGTAGCGG 62.157 72.222 0.00 0.00 0.00 5.52
306 307 4.157120 CCGGGACAAGGGGTAGCG 62.157 72.222 0.00 0.00 0.00 4.26
307 308 3.007323 ACCGGGACAAGGGGTAGC 61.007 66.667 6.32 0.00 30.76 3.58
308 309 1.196104 TTCACCGGGACAAGGGGTAG 61.196 60.000 6.32 0.00 32.92 3.18
309 310 0.548197 ATTCACCGGGACAAGGGGTA 60.548 55.000 6.32 0.00 32.92 3.69
310 311 1.850755 ATTCACCGGGACAAGGGGT 60.851 57.895 6.32 0.00 32.92 4.95
311 312 1.378514 CATTCACCGGGACAAGGGG 60.379 63.158 6.32 0.00 0.00 4.79
312 313 0.255890 ATCATTCACCGGGACAAGGG 59.744 55.000 6.32 0.00 0.00 3.95
313 314 1.340017 ACATCATTCACCGGGACAAGG 60.340 52.381 6.32 0.00 0.00 3.61
314 315 2.113860 ACATCATTCACCGGGACAAG 57.886 50.000 6.32 0.00 0.00 3.16
315 316 2.158559 CAACATCATTCACCGGGACAA 58.841 47.619 6.32 0.00 0.00 3.18
316 317 1.073125 ACAACATCATTCACCGGGACA 59.927 47.619 6.32 0.00 0.00 4.02
317 318 1.737793 GACAACATCATTCACCGGGAC 59.262 52.381 6.32 0.00 0.00 4.46
318 319 1.339631 GGACAACATCATTCACCGGGA 60.340 52.381 6.32 0.00 0.00 5.14
319 320 1.094785 GGACAACATCATTCACCGGG 58.905 55.000 6.32 0.00 0.00 5.73
320 321 1.094785 GGGACAACATCATTCACCGG 58.905 55.000 0.00 0.00 0.00 5.28
321 322 1.094785 GGGGACAACATCATTCACCG 58.905 55.000 0.00 0.00 0.00 4.94
322 323 2.493278 CAAGGGGACAACATCATTCACC 59.507 50.000 0.00 0.00 32.39 4.02
323 324 2.493278 CCAAGGGGACAACATCATTCAC 59.507 50.000 0.00 0.00 35.59 3.18
324 325 2.378208 TCCAAGGGGACAACATCATTCA 59.622 45.455 0.00 0.00 38.64 2.57
325 326 3.019564 CTCCAAGGGGACAACATCATTC 58.980 50.000 0.00 0.00 38.64 2.67
326 327 2.291800 CCTCCAAGGGGACAACATCATT 60.292 50.000 0.00 0.00 38.64 2.57
327 328 1.285962 CCTCCAAGGGGACAACATCAT 59.714 52.381 0.00 0.00 38.64 2.45
328 329 0.698238 CCTCCAAGGGGACAACATCA 59.302 55.000 0.00 0.00 38.64 3.07
329 330 0.681243 GCCTCCAAGGGGACAACATC 60.681 60.000 0.00 0.00 38.64 3.06
330 331 1.384191 GCCTCCAAGGGGACAACAT 59.616 57.895 0.00 0.00 38.64 2.71
331 332 2.840753 GGCCTCCAAGGGGACAACA 61.841 63.158 0.00 0.00 38.64 3.33
332 333 2.035783 GGCCTCCAAGGGGACAAC 59.964 66.667 0.00 0.00 38.64 3.32
333 334 3.264845 GGGCCTCCAAGGGGACAA 61.265 66.667 0.84 0.00 38.64 3.18
334 335 4.608514 TGGGCCTCCAAGGGGACA 62.609 66.667 4.53 0.00 40.73 4.02
335 336 3.732849 CTGGGCCTCCAAGGGGAC 61.733 72.222 4.53 0.00 43.51 4.46
336 337 2.840203 CTACTGGGCCTCCAAGGGGA 62.840 65.000 4.53 0.00 43.51 4.81
337 338 2.286121 TACTGGGCCTCCAAGGGG 60.286 66.667 4.53 0.00 43.51 4.79
338 339 2.378634 CCTACTGGGCCTCCAAGGG 61.379 68.421 4.53 0.00 43.51 3.95
339 340 1.306997 TCCTACTGGGCCTCCAAGG 60.307 63.158 4.53 6.77 43.51 3.61
340 341 0.618968 ACTCCTACTGGGCCTCCAAG 60.619 60.000 4.53 0.00 43.51 3.61
341 342 0.617820 GACTCCTACTGGGCCTCCAA 60.618 60.000 4.53 0.00 43.51 3.53
342 343 1.001760 GACTCCTACTGGGCCTCCA 59.998 63.158 4.53 0.00 41.58 3.86
343 344 2.128507 CGACTCCTACTGGGCCTCC 61.129 68.421 4.53 0.00 34.39 4.30
344 345 2.787567 GCGACTCCTACTGGGCCTC 61.788 68.421 4.53 0.00 34.39 4.70
345 346 2.760385 GCGACTCCTACTGGGCCT 60.760 66.667 4.53 0.00 34.39 5.19
346 347 3.075005 TGCGACTCCTACTGGGCC 61.075 66.667 0.00 0.00 34.39 5.80
347 348 2.496817 CTGCGACTCCTACTGGGC 59.503 66.667 0.00 0.00 34.39 5.36
348 349 2.496817 GCTGCGACTCCTACTGGG 59.503 66.667 0.00 0.00 0.00 4.45
349 350 2.496817 GGCTGCGACTCCTACTGG 59.503 66.667 0.00 0.00 0.00 4.00
350 351 2.496817 GGGCTGCGACTCCTACTG 59.503 66.667 0.00 0.00 0.00 2.74
351 352 3.141488 CGGGCTGCGACTCCTACT 61.141 66.667 0.00 0.00 0.00 2.57
352 353 3.127352 CTCGGGCTGCGACTCCTAC 62.127 68.421 0.00 0.00 0.00 3.18
353 354 2.829003 CTCGGGCTGCGACTCCTA 60.829 66.667 0.00 0.00 0.00 2.94
356 357 3.296709 TTTCCTCGGGCTGCGACTC 62.297 63.158 0.00 0.00 0.00 3.36
357 358 3.311110 TTTCCTCGGGCTGCGACT 61.311 61.111 0.00 0.00 0.00 4.18
358 359 3.119096 GTTTCCTCGGGCTGCGAC 61.119 66.667 0.00 0.00 0.00 5.19
359 360 1.609635 TATGTTTCCTCGGGCTGCGA 61.610 55.000 0.00 0.00 0.00 5.10
360 361 0.532862 ATATGTTTCCTCGGGCTGCG 60.533 55.000 0.00 0.00 0.00 5.18
361 362 1.230324 GATATGTTTCCTCGGGCTGC 58.770 55.000 0.00 0.00 0.00 5.25
362 363 1.068588 TCGATATGTTTCCTCGGGCTG 59.931 52.381 0.00 0.00 33.38 4.85
363 364 1.410004 TCGATATGTTTCCTCGGGCT 58.590 50.000 0.00 0.00 33.38 5.19
364 365 2.069273 CATCGATATGTTTCCTCGGGC 58.931 52.381 0.00 0.00 33.38 6.13
365 366 3.386768 ACATCGATATGTTTCCTCGGG 57.613 47.619 0.00 0.00 44.07 5.14
372 373 7.875210 GCTGCAGCACAACATCGATATGTTT 62.875 44.000 33.36 3.39 45.72 2.83
374 375 5.079613 GCTGCAGCACAACATCGATATGT 62.080 47.826 33.36 9.55 43.79 2.29
375 376 2.601504 GCTGCAGCACAACATCGATATG 60.602 50.000 33.36 3.01 41.59 1.78
376 377 1.600957 GCTGCAGCACAACATCGATAT 59.399 47.619 33.36 0.00 41.59 1.63
377 378 1.009078 GCTGCAGCACAACATCGATA 58.991 50.000 33.36 0.00 41.59 2.92
378 379 1.798735 GCTGCAGCACAACATCGAT 59.201 52.632 33.36 0.00 41.59 3.59
379 380 3.256936 GCTGCAGCACAACATCGA 58.743 55.556 33.36 0.00 41.59 3.59
393 394 1.633852 GCTTCGAAGGCAGAGTGCTG 61.634 60.000 25.77 0.00 44.28 4.41
394 395 1.375268 GCTTCGAAGGCAGAGTGCT 60.375 57.895 25.77 0.00 44.28 4.40
395 396 1.357991 GAGCTTCGAAGGCAGAGTGC 61.358 60.000 25.77 10.27 44.08 4.40
396 397 1.075425 CGAGCTTCGAAGGCAGAGTG 61.075 60.000 25.77 0.00 43.74 3.51
397 398 1.214062 CGAGCTTCGAAGGCAGAGT 59.786 57.895 25.77 3.45 43.74 3.24
398 399 2.164026 GCGAGCTTCGAAGGCAGAG 61.164 63.158 25.77 13.45 43.74 3.35
399 400 2.125912 GCGAGCTTCGAAGGCAGA 60.126 61.111 25.77 0.00 43.74 4.26
400 401 2.029288 TTGCGAGCTTCGAAGGCAG 61.029 57.895 25.77 15.76 43.74 4.85
401 402 2.030412 TTGCGAGCTTCGAAGGCA 59.970 55.556 25.77 22.34 43.74 4.75
402 403 1.841663 TTGTTGCGAGCTTCGAAGGC 61.842 55.000 25.77 20.14 43.74 4.35
403 404 0.164647 CTTGTTGCGAGCTTCGAAGG 59.835 55.000 25.77 11.07 43.74 3.46
404 405 0.164647 CCTTGTTGCGAGCTTCGAAG 59.835 55.000 21.02 21.02 43.74 3.79
405 406 0.249699 TCCTTGTTGCGAGCTTCGAA 60.250 50.000 9.32 0.00 43.74 3.71
406 407 0.667487 CTCCTTGTTGCGAGCTTCGA 60.667 55.000 9.32 0.00 43.74 3.71
407 408 1.630244 CCTCCTTGTTGCGAGCTTCG 61.630 60.000 0.00 0.00 43.89 3.79
408 409 1.301677 CCCTCCTTGTTGCGAGCTTC 61.302 60.000 0.00 0.00 0.00 3.86
409 410 1.302832 CCCTCCTTGTTGCGAGCTT 60.303 57.895 0.00 0.00 0.00 3.74
410 411 1.768684 TTCCCTCCTTGTTGCGAGCT 61.769 55.000 0.00 0.00 0.00 4.09
411 412 0.678048 ATTCCCTCCTTGTTGCGAGC 60.678 55.000 0.00 0.00 0.00 5.03
412 413 1.826385 AATTCCCTCCTTGTTGCGAG 58.174 50.000 0.00 0.00 0.00 5.03
413 414 1.885887 CAAATTCCCTCCTTGTTGCGA 59.114 47.619 0.00 0.00 0.00 5.10
414 415 1.669795 GCAAATTCCCTCCTTGTTGCG 60.670 52.381 0.00 0.00 32.89 4.85
415 416 1.338105 GGCAAATTCCCTCCTTGTTGC 60.338 52.381 0.00 0.00 40.42 4.17
416 417 1.067635 CGGCAAATTCCCTCCTTGTTG 60.068 52.381 0.00 0.00 0.00 3.33
417 418 1.256812 CGGCAAATTCCCTCCTTGTT 58.743 50.000 0.00 0.00 0.00 2.83
418 419 1.250840 GCGGCAAATTCCCTCCTTGT 61.251 55.000 0.00 0.00 0.00 3.16
419 420 1.512694 GCGGCAAATTCCCTCCTTG 59.487 57.895 0.00 0.00 0.00 3.61
420 421 2.046285 CGCGGCAAATTCCCTCCTT 61.046 57.895 0.00 0.00 0.00 3.36
421 422 2.438434 CGCGGCAAATTCCCTCCT 60.438 61.111 0.00 0.00 0.00 3.69
422 423 2.750237 ACGCGGCAAATTCCCTCC 60.750 61.111 12.47 0.00 0.00 4.30
423 424 1.862602 AACACGCGGCAAATTCCCTC 61.863 55.000 12.47 0.00 0.00 4.30
424 425 1.862602 GAACACGCGGCAAATTCCCT 61.863 55.000 12.47 0.00 0.00 4.20
425 426 1.443702 GAACACGCGGCAAATTCCC 60.444 57.895 12.47 0.00 0.00 3.97
426 427 1.443702 GGAACACGCGGCAAATTCC 60.444 57.895 12.47 11.88 32.56 3.01
427 428 1.795962 CGGAACACGCGGCAAATTC 60.796 57.895 12.47 6.30 34.82 2.17
428 429 2.254051 CGGAACACGCGGCAAATT 59.746 55.556 12.47 0.00 34.82 1.82
446 447 4.953868 TCGTCGGTGGTTGCGTGG 62.954 66.667 0.00 0.00 0.00 4.94
447 448 3.403057 CTCGTCGGTGGTTGCGTG 61.403 66.667 0.00 0.00 0.00 5.34
448 449 4.657824 CCTCGTCGGTGGTTGCGT 62.658 66.667 0.00 0.00 0.00 5.24
449 450 4.351938 TCCTCGTCGGTGGTTGCG 62.352 66.667 0.00 0.00 0.00 4.85
450 451 2.432628 CTCCTCGTCGGTGGTTGC 60.433 66.667 0.00 0.00 0.00 4.17
451 452 2.432628 GCTCCTCGTCGGTGGTTG 60.433 66.667 0.00 0.00 0.00 3.77
452 453 4.052229 CGCTCCTCGTCGGTGGTT 62.052 66.667 0.00 0.00 0.00 3.67
458 459 4.554363 AATCGCCGCTCCTCGTCG 62.554 66.667 0.00 0.00 41.30 5.12
459 460 2.956964 CAATCGCCGCTCCTCGTC 60.957 66.667 0.00 0.00 36.19 4.20
460 461 4.514577 CCAATCGCCGCTCCTCGT 62.515 66.667 0.00 0.00 36.19 4.18
461 462 4.207281 TCCAATCGCCGCTCCTCG 62.207 66.667 0.00 0.00 38.08 4.63
462 463 2.279784 CTCCAATCGCCGCTCCTC 60.280 66.667 0.00 0.00 0.00 3.71
463 464 4.537433 GCTCCAATCGCCGCTCCT 62.537 66.667 0.00 0.00 0.00 3.69
464 465 4.537433 AGCTCCAATCGCCGCTCC 62.537 66.667 0.00 0.00 0.00 4.70
465 466 2.964389 GAGCTCCAATCGCCGCTC 60.964 66.667 0.87 0.00 41.60 5.03
466 467 4.880537 CGAGCTCCAATCGCCGCT 62.881 66.667 8.47 0.00 32.81 5.52
468 469 3.257561 CACGAGCTCCAATCGCCG 61.258 66.667 8.47 0.00 43.91 6.46
469 470 1.880340 CTCACGAGCTCCAATCGCC 60.880 63.158 8.47 0.00 43.91 5.54
470 471 1.153745 ACTCACGAGCTCCAATCGC 60.154 57.895 8.47 0.00 43.91 4.58
471 472 1.416813 GCACTCACGAGCTCCAATCG 61.417 60.000 8.47 0.00 45.54 3.34
472 473 1.416813 CGCACTCACGAGCTCCAATC 61.417 60.000 8.47 0.00 34.06 2.67
473 474 1.446792 CGCACTCACGAGCTCCAAT 60.447 57.895 8.47 0.00 34.06 3.16
474 475 2.049156 CGCACTCACGAGCTCCAA 60.049 61.111 8.47 0.00 34.06 3.53
475 476 2.983592 TCGCACTCACGAGCTCCA 60.984 61.111 8.47 0.00 37.09 3.86
476 477 2.505118 GTCGCACTCACGAGCTCC 60.505 66.667 8.47 0.00 43.89 4.70
480 481 1.384989 ATAGGGGTCGCACTCACGAG 61.385 60.000 0.00 0.00 43.89 4.18
481 482 1.379443 ATAGGGGTCGCACTCACGA 60.379 57.895 0.00 0.00 40.36 4.35
482 483 1.226974 CATAGGGGTCGCACTCACG 60.227 63.158 0.00 0.00 0.00 4.35
483 484 1.521681 GCATAGGGGTCGCACTCAC 60.522 63.158 0.00 0.00 0.00 3.51
484 485 1.264749 AAGCATAGGGGTCGCACTCA 61.265 55.000 0.00 0.00 0.00 3.41
485 486 0.750850 TAAGCATAGGGGTCGCACTC 59.249 55.000 0.00 0.00 0.00 3.51
486 487 0.464452 GTAAGCATAGGGGTCGCACT 59.536 55.000 0.00 0.00 0.00 4.40
487 488 0.532196 GGTAAGCATAGGGGTCGCAC 60.532 60.000 0.00 0.00 0.00 5.34
488 489 0.689745 AGGTAAGCATAGGGGTCGCA 60.690 55.000 0.00 0.00 0.00 5.10
489 490 0.033642 GAGGTAAGCATAGGGGTCGC 59.966 60.000 0.00 0.00 0.00 5.19
490 491 1.410004 TGAGGTAAGCATAGGGGTCG 58.590 55.000 0.00 0.00 0.00 4.79
491 492 3.391296 TCATTGAGGTAAGCATAGGGGTC 59.609 47.826 0.00 0.00 0.00 4.46
492 493 3.393687 TCATTGAGGTAAGCATAGGGGT 58.606 45.455 0.00 0.00 0.00 4.95
493 494 4.202503 ACATCATTGAGGTAAGCATAGGGG 60.203 45.833 1.40 0.00 0.00 4.79
494 495 4.978099 ACATCATTGAGGTAAGCATAGGG 58.022 43.478 1.40 0.00 0.00 3.53
495 496 5.862845 AGACATCATTGAGGTAAGCATAGG 58.137 41.667 3.60 0.00 0.00 2.57
496 497 5.931146 GGAGACATCATTGAGGTAAGCATAG 59.069 44.000 3.60 0.00 0.00 2.23
497 498 5.509670 CGGAGACATCATTGAGGTAAGCATA 60.510 44.000 3.60 0.00 0.00 3.14
498 499 4.712476 GGAGACATCATTGAGGTAAGCAT 58.288 43.478 3.60 0.00 0.00 3.79
499 500 3.430790 CGGAGACATCATTGAGGTAAGCA 60.431 47.826 3.60 0.00 0.00 3.91
500 501 3.126831 CGGAGACATCATTGAGGTAAGC 58.873 50.000 3.60 0.00 0.00 3.09
501 502 4.500545 CCTCGGAGACATCATTGAGGTAAG 60.501 50.000 6.58 0.00 36.70 2.34
502 503 3.384789 CCTCGGAGACATCATTGAGGTAA 59.615 47.826 6.58 0.00 36.70 2.85
503 504 2.959030 CCTCGGAGACATCATTGAGGTA 59.041 50.000 6.58 0.00 36.70 3.08
504 505 1.759445 CCTCGGAGACATCATTGAGGT 59.241 52.381 6.58 3.18 36.70 3.85
505 506 2.034878 TCCTCGGAGACATCATTGAGG 58.965 52.381 6.58 0.00 39.99 3.86
506 507 2.035704 CCTCCTCGGAGACATCATTGAG 59.964 54.545 14.45 1.89 44.53 3.02
507 508 2.034878 CCTCCTCGGAGACATCATTGA 58.965 52.381 14.45 0.00 44.53 2.57
508 509 1.069823 CCCTCCTCGGAGACATCATTG 59.930 57.143 14.45 0.00 44.53 2.82
509 510 1.418334 CCCTCCTCGGAGACATCATT 58.582 55.000 14.45 0.00 44.53 2.57
510 511 0.470833 CCCCTCCTCGGAGACATCAT 60.471 60.000 14.45 0.00 44.53 2.45
511 512 1.075970 CCCCTCCTCGGAGACATCA 60.076 63.158 14.45 0.00 44.53 3.07
512 513 1.834822 CCCCCTCCTCGGAGACATC 60.835 68.421 14.45 0.00 44.53 3.06
513 514 2.283809 CCCCCTCCTCGGAGACAT 59.716 66.667 14.45 0.00 44.53 3.06
514 515 2.944954 TCCCCCTCCTCGGAGACA 60.945 66.667 14.45 0.00 44.53 3.41
517 518 3.430497 TCCTCCCCCTCCTCGGAG 61.430 72.222 5.97 5.97 44.59 4.63
518 519 3.430497 CTCCTCCCCCTCCTCGGA 61.430 72.222 0.00 0.00 33.16 4.55
519 520 4.548513 CCTCCTCCCCCTCCTCGG 62.549 77.778 0.00 0.00 0.00 4.63
520 521 3.430497 TCCTCCTCCCCCTCCTCG 61.430 72.222 0.00 0.00 0.00 4.63
521 522 2.612251 CTCCTCCTCCCCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
522 523 3.039526 CCTCCTCCTCCCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
523 524 1.979389 ATTCCTCCTCCTCCCCCTCC 61.979 65.000 0.00 0.00 0.00 4.30
524 525 0.868186 TATTCCTCCTCCTCCCCCTC 59.132 60.000 0.00 0.00 0.00 4.30
525 526 1.575609 ATATTCCTCCTCCTCCCCCT 58.424 55.000 0.00 0.00 0.00 4.79
526 527 2.270858 GAATATTCCTCCTCCTCCCCC 58.729 57.143 3.92 0.00 0.00 5.40
527 528 1.903183 CGAATATTCCTCCTCCTCCCC 59.097 57.143 9.87 0.00 0.00 4.81
528 529 2.829120 CTCGAATATTCCTCCTCCTCCC 59.171 54.545 9.87 0.00 0.00 4.30
529 530 2.829120 CCTCGAATATTCCTCCTCCTCC 59.171 54.545 9.87 0.00 0.00 4.30
530 531 3.768878 TCCTCGAATATTCCTCCTCCTC 58.231 50.000 9.87 0.00 0.00 3.71
531 532 3.905493 TCCTCGAATATTCCTCCTCCT 57.095 47.619 9.87 0.00 0.00 3.69
532 533 4.153411 TCTTCCTCGAATATTCCTCCTCC 58.847 47.826 9.87 0.00 0.00 4.30
533 534 5.536916 TCTTCTTCCTCGAATATTCCTCCTC 59.463 44.000 9.87 0.00 0.00 3.71
534 535 5.459505 TCTTCTTCCTCGAATATTCCTCCT 58.540 41.667 9.87 0.00 0.00 3.69
535 536 5.793030 TCTTCTTCCTCGAATATTCCTCC 57.207 43.478 9.87 0.00 0.00 4.30
536 537 7.045126 TCTTCTTCTTCCTCGAATATTCCTC 57.955 40.000 9.87 0.00 0.00 3.71
537 538 6.041523 CCTCTTCTTCTTCCTCGAATATTCCT 59.958 42.308 9.87 0.00 0.00 3.36
538 539 6.041069 TCCTCTTCTTCTTCCTCGAATATTCC 59.959 42.308 9.87 0.00 0.00 3.01
539 540 6.921307 GTCCTCTTCTTCTTCCTCGAATATTC 59.079 42.308 5.30 5.30 0.00 1.75
540 541 6.183360 GGTCCTCTTCTTCTTCCTCGAATATT 60.183 42.308 0.00 0.00 0.00 1.28
541 542 5.303333 GGTCCTCTTCTTCTTCCTCGAATAT 59.697 44.000 0.00 0.00 0.00 1.28
542 543 4.645588 GGTCCTCTTCTTCTTCCTCGAATA 59.354 45.833 0.00 0.00 0.00 1.75
543 544 3.449377 GGTCCTCTTCTTCTTCCTCGAAT 59.551 47.826 0.00 0.00 0.00 3.34
544 545 2.826725 GGTCCTCTTCTTCTTCCTCGAA 59.173 50.000 0.00 0.00 0.00 3.71
545 546 2.225041 TGGTCCTCTTCTTCTTCCTCGA 60.225 50.000 0.00 0.00 0.00 4.04
546 547 2.171840 TGGTCCTCTTCTTCTTCCTCG 58.828 52.381 0.00 0.00 0.00 4.63
547 548 3.772025 TCATGGTCCTCTTCTTCTTCCTC 59.228 47.826 0.00 0.00 0.00 3.71
548 549 3.517500 GTCATGGTCCTCTTCTTCTTCCT 59.482 47.826 0.00 0.00 0.00 3.36
549 550 3.261897 TGTCATGGTCCTCTTCTTCTTCC 59.738 47.826 0.00 0.00 0.00 3.46
550 551 4.543590 TGTCATGGTCCTCTTCTTCTTC 57.456 45.455 0.00 0.00 0.00 2.87
551 552 4.103153 TGTTGTCATGGTCCTCTTCTTCTT 59.897 41.667 0.00 0.00 0.00 2.52
552 553 3.648067 TGTTGTCATGGTCCTCTTCTTCT 59.352 43.478 0.00 0.00 0.00 2.85
553 554 3.999663 CTGTTGTCATGGTCCTCTTCTTC 59.000 47.826 0.00 0.00 0.00 2.87
554 555 3.808618 GCTGTTGTCATGGTCCTCTTCTT 60.809 47.826 0.00 0.00 0.00 2.52
555 556 2.289945 GCTGTTGTCATGGTCCTCTTCT 60.290 50.000 0.00 0.00 0.00 2.85
556 557 2.079925 GCTGTTGTCATGGTCCTCTTC 58.920 52.381 0.00 0.00 0.00 2.87
557 558 1.609061 CGCTGTTGTCATGGTCCTCTT 60.609 52.381 0.00 0.00 0.00 2.85
558 559 0.036952 CGCTGTTGTCATGGTCCTCT 60.037 55.000 0.00 0.00 0.00 3.69
559 560 0.037326 TCGCTGTTGTCATGGTCCTC 60.037 55.000 0.00 0.00 0.00 3.71
560 561 0.396435 TTCGCTGTTGTCATGGTCCT 59.604 50.000 0.00 0.00 0.00 3.85
561 562 0.798776 CTTCGCTGTTGTCATGGTCC 59.201 55.000 0.00 0.00 0.00 4.46
562 563 1.728971 CTCTTCGCTGTTGTCATGGTC 59.271 52.381 0.00 0.00 0.00 4.02
563 564 1.609061 CCTCTTCGCTGTTGTCATGGT 60.609 52.381 0.00 0.00 0.00 3.55
564 565 1.081892 CCTCTTCGCTGTTGTCATGG 58.918 55.000 0.00 0.00 0.00 3.66
565 566 1.728971 GTCCTCTTCGCTGTTGTCATG 59.271 52.381 0.00 0.00 0.00 3.07
566 567 1.670087 CGTCCTCTTCGCTGTTGTCAT 60.670 52.381 0.00 0.00 0.00 3.06
567 568 0.318699 CGTCCTCTTCGCTGTTGTCA 60.319 55.000 0.00 0.00 0.00 3.58
568 569 0.039437 TCGTCCTCTTCGCTGTTGTC 60.039 55.000 0.00 0.00 0.00 3.18
569 570 0.387929 TTCGTCCTCTTCGCTGTTGT 59.612 50.000 0.00 0.00 0.00 3.32
570 571 1.063806 CTTCGTCCTCTTCGCTGTTG 58.936 55.000 0.00 0.00 0.00 3.33
571 572 0.959553 TCTTCGTCCTCTTCGCTGTT 59.040 50.000 0.00 0.00 0.00 3.16
572 573 0.241481 GTCTTCGTCCTCTTCGCTGT 59.759 55.000 0.00 0.00 0.00 4.40
573 574 0.523966 AGTCTTCGTCCTCTTCGCTG 59.476 55.000 0.00 0.00 0.00 5.18
574 575 2.011222 CTAGTCTTCGTCCTCTTCGCT 58.989 52.381 0.00 0.00 0.00 4.93
575 576 2.008329 TCTAGTCTTCGTCCTCTTCGC 58.992 52.381 0.00 0.00 0.00 4.70
576 577 2.029486 CGTCTAGTCTTCGTCCTCTTCG 59.971 54.545 0.00 0.00 0.00 3.79
577 578 3.062504 GTCGTCTAGTCTTCGTCCTCTTC 59.937 52.174 0.00 0.00 0.00 2.87
578 579 3.002102 GTCGTCTAGTCTTCGTCCTCTT 58.998 50.000 0.00 0.00 0.00 2.85
579 580 2.028294 TGTCGTCTAGTCTTCGTCCTCT 60.028 50.000 0.00 0.00 0.00 3.69
580 581 2.094099 GTGTCGTCTAGTCTTCGTCCTC 59.906 54.545 0.00 0.00 0.00 3.71
581 582 2.075338 GTGTCGTCTAGTCTTCGTCCT 58.925 52.381 0.00 0.00 0.00 3.85
582 583 1.130186 GGTGTCGTCTAGTCTTCGTCC 59.870 57.143 0.00 0.00 0.00 4.79
583 584 1.201899 CGGTGTCGTCTAGTCTTCGTC 60.202 57.143 0.00 0.00 0.00 4.20
584 585 0.795085 CGGTGTCGTCTAGTCTTCGT 59.205 55.000 0.00 0.00 0.00 3.85
585 586 0.096628 CCGGTGTCGTCTAGTCTTCG 59.903 60.000 0.00 0.00 33.95 3.79
586 587 0.179169 GCCGGTGTCGTCTAGTCTTC 60.179 60.000 1.90 0.00 33.95 2.87
587 588 1.593296 GGCCGGTGTCGTCTAGTCTT 61.593 60.000 1.90 0.00 33.95 3.01
588 589 2.045131 GGCCGGTGTCGTCTAGTCT 61.045 63.158 1.90 0.00 33.95 3.24
589 590 2.338015 TGGCCGGTGTCGTCTAGTC 61.338 63.158 1.90 0.00 33.95 2.59
590 591 2.282674 TGGCCGGTGTCGTCTAGT 60.283 61.111 1.90 0.00 33.95 2.57
591 592 2.181021 GTGGCCGGTGTCGTCTAG 59.819 66.667 1.90 0.00 33.95 2.43
592 593 3.740397 CGTGGCCGGTGTCGTCTA 61.740 66.667 1.90 0.00 33.95 2.59
596 597 3.678717 CTAGTCGTGGCCGGTGTCG 62.679 68.421 1.90 5.61 33.95 4.35
597 598 2.181021 CTAGTCGTGGCCGGTGTC 59.819 66.667 1.90 0.00 33.95 3.67
598 599 2.599578 ACTAGTCGTGGCCGGTGT 60.600 61.111 1.90 0.00 33.95 4.16
599 600 2.126071 CACTAGTCGTGGCCGGTG 60.126 66.667 1.90 0.00 40.02 4.94
607 608 3.347077 ACTGCTACCTACACTAGTCGT 57.653 47.619 0.00 0.00 0.00 4.34
608 609 5.759273 AGAATACTGCTACCTACACTAGTCG 59.241 44.000 0.00 0.00 0.00 4.18
609 610 7.419204 CAAGAATACTGCTACCTACACTAGTC 58.581 42.308 0.00 0.00 0.00 2.59
610 611 6.321690 CCAAGAATACTGCTACCTACACTAGT 59.678 42.308 0.00 0.00 0.00 2.57
611 612 6.546403 TCCAAGAATACTGCTACCTACACTAG 59.454 42.308 0.00 0.00 0.00 2.57
612 613 6.429151 TCCAAGAATACTGCTACCTACACTA 58.571 40.000 0.00 0.00 0.00 2.74
613 614 5.269991 TCCAAGAATACTGCTACCTACACT 58.730 41.667 0.00 0.00 0.00 3.55
614 615 5.593679 TCCAAGAATACTGCTACCTACAC 57.406 43.478 0.00 0.00 0.00 2.90
615 616 6.614694 TTTCCAAGAATACTGCTACCTACA 57.385 37.500 0.00 0.00 0.00 2.74
616 617 7.048512 ACATTTCCAAGAATACTGCTACCTAC 58.951 38.462 0.00 0.00 0.00 3.18
617 618 7.195374 ACATTTCCAAGAATACTGCTACCTA 57.805 36.000 0.00 0.00 0.00 3.08
618 619 6.067217 ACATTTCCAAGAATACTGCTACCT 57.933 37.500 0.00 0.00 0.00 3.08
619 620 5.006746 CGACATTTCCAAGAATACTGCTACC 59.993 44.000 0.00 0.00 0.00 3.18
620 621 5.502544 GCGACATTTCCAAGAATACTGCTAC 60.503 44.000 0.00 0.00 0.00 3.58
621 622 4.570772 GCGACATTTCCAAGAATACTGCTA 59.429 41.667 0.00 0.00 0.00 3.49
622 623 3.375299 GCGACATTTCCAAGAATACTGCT 59.625 43.478 0.00 0.00 0.00 4.24
623 624 3.375299 AGCGACATTTCCAAGAATACTGC 59.625 43.478 0.00 0.00 0.00 4.40
624 625 6.313905 ACTTAGCGACATTTCCAAGAATACTG 59.686 38.462 0.00 0.00 0.00 2.74
625 626 6.407202 ACTTAGCGACATTTCCAAGAATACT 58.593 36.000 0.00 0.00 0.00 2.12
626 627 6.508088 CGACTTAGCGACATTTCCAAGAATAC 60.508 42.308 0.00 0.00 0.00 1.89
627 628 5.518847 CGACTTAGCGACATTTCCAAGAATA 59.481 40.000 0.00 0.00 0.00 1.75
628 629 4.330074 CGACTTAGCGACATTTCCAAGAAT 59.670 41.667 0.00 0.00 0.00 2.40
629 630 3.678072 CGACTTAGCGACATTTCCAAGAA 59.322 43.478 0.00 0.00 0.00 2.52
630 631 3.250744 CGACTTAGCGACATTTCCAAGA 58.749 45.455 0.00 0.00 0.00 3.02
631 632 2.222819 GCGACTTAGCGACATTTCCAAG 60.223 50.000 0.00 0.00 0.00 3.61
632 633 1.730064 GCGACTTAGCGACATTTCCAA 59.270 47.619 0.00 0.00 0.00 3.53
633 634 1.337354 TGCGACTTAGCGACATTTCCA 60.337 47.619 0.00 0.00 40.67 3.53
634 635 1.355971 TGCGACTTAGCGACATTTCC 58.644 50.000 0.00 0.00 40.67 3.13
635 636 3.449322 TTTGCGACTTAGCGACATTTC 57.551 42.857 0.00 0.00 40.67 2.17
636 637 4.419522 AATTTGCGACTTAGCGACATTT 57.580 36.364 0.00 0.00 40.67 2.32
637 638 5.734855 ATAATTTGCGACTTAGCGACATT 57.265 34.783 0.00 0.00 40.67 2.71
638 639 6.423905 ACATATAATTTGCGACTTAGCGACAT 59.576 34.615 0.00 0.00 40.67 3.06
639 640 5.751509 ACATATAATTTGCGACTTAGCGACA 59.248 36.000 0.00 0.00 40.67 4.35
640 641 6.211664 ACATATAATTTGCGACTTAGCGAC 57.788 37.500 0.00 0.00 40.67 5.19
641 642 7.933728 TTACATATAATTTGCGACTTAGCGA 57.066 32.000 0.00 0.00 40.67 4.93
642 643 8.981370 TTTTACATATAATTTGCGACTTAGCG 57.019 30.769 0.00 0.00 40.67 4.26
646 647 9.433317 CGTCATTTTACATATAATTTGCGACTT 57.567 29.630 0.00 0.00 0.00 3.01
647 648 7.586300 GCGTCATTTTACATATAATTTGCGACT 59.414 33.333 0.00 0.00 0.00 4.18
648 649 7.374754 TGCGTCATTTTACATATAATTTGCGAC 59.625 33.333 0.00 0.00 0.00 5.19
649 650 7.410485 TGCGTCATTTTACATATAATTTGCGA 58.590 30.769 0.00 0.00 0.00 5.10
650 651 7.601881 TGCGTCATTTTACATATAATTTGCG 57.398 32.000 0.00 0.00 0.00 4.85
665 666 4.519540 ACTTAGCCAAAATGCGTCATTT 57.480 36.364 10.67 10.67 44.62 2.32
666 667 5.637006 TTACTTAGCCAAAATGCGTCATT 57.363 34.783 0.09 0.09 35.39 2.57
667 668 5.637006 TTTACTTAGCCAAAATGCGTCAT 57.363 34.783 0.00 0.00 36.02 3.06
668 669 5.637006 ATTTACTTAGCCAAAATGCGTCA 57.363 34.783 0.00 0.00 36.02 4.35
669 670 5.220209 GCAATTTACTTAGCCAAAATGCGTC 60.220 40.000 4.83 0.00 36.02 5.19
670 671 4.625311 GCAATTTACTTAGCCAAAATGCGT 59.375 37.500 4.83 0.00 36.02 5.24
671 672 4.624882 TGCAATTTACTTAGCCAAAATGCG 59.375 37.500 12.25 0.00 36.02 4.73
672 673 5.407995 TGTGCAATTTACTTAGCCAAAATGC 59.592 36.000 10.93 10.93 0.00 3.56
673 674 7.418840 TTGTGCAATTTACTTAGCCAAAATG 57.581 32.000 0.00 0.00 0.00 2.32
674 675 8.341903 GTTTTGTGCAATTTACTTAGCCAAAAT 58.658 29.630 1.08 0.00 38.31 1.82
675 676 7.201652 GGTTTTGTGCAATTTACTTAGCCAAAA 60.202 33.333 0.00 0.00 36.14 2.44
676 677 6.258947 GGTTTTGTGCAATTTACTTAGCCAAA 59.741 34.615 0.00 0.00 0.00 3.28
677 678 5.755861 GGTTTTGTGCAATTTACTTAGCCAA 59.244 36.000 0.00 0.00 0.00 4.52
678 679 5.163405 TGGTTTTGTGCAATTTACTTAGCCA 60.163 36.000 0.00 0.00 0.00 4.75
679 680 5.176774 GTGGTTTTGTGCAATTTACTTAGCC 59.823 40.000 0.00 0.00 0.00 3.93
680 681 5.176774 GGTGGTTTTGTGCAATTTACTTAGC 59.823 40.000 0.00 0.00 0.00 3.09
681 682 6.200097 GTGGTGGTTTTGTGCAATTTACTTAG 59.800 38.462 0.00 0.00 0.00 2.18
682 683 6.043411 GTGGTGGTTTTGTGCAATTTACTTA 58.957 36.000 0.00 0.00 0.00 2.24
846 855 2.118313 TTGATGTCACATCAGCCTGG 57.882 50.000 19.77 0.00 0.00 4.45
859 868 5.697633 ACGTAACGGTGTTAGAAATTGATGT 59.302 36.000 0.00 0.00 0.00 3.06
1038 1069 3.235750 TGATGGATCCGATGAGAGAGT 57.764 47.619 7.39 0.00 0.00 3.24
1044 1075 3.573967 TCGATTCTTGATGGATCCGATGA 59.426 43.478 7.39 0.00 0.00 2.92
1046 1077 3.616076 GCTCGATTCTTGATGGATCCGAT 60.616 47.826 7.39 1.61 0.00 4.18
1056 1087 1.811266 GCTGCGGCTCGATTCTTGA 60.811 57.895 11.21 0.00 35.22 3.02
1103 1140 2.970324 GGCCGTTGCTCGTGACAA 60.970 61.111 0.00 0.00 37.74 3.18
1129 1179 3.083349 CTCATCCAGGACCCGCCA 61.083 66.667 0.00 0.00 40.02 5.69
1155 1205 1.451927 GGCGATTGCATCACTGGGA 60.452 57.895 7.38 0.00 45.35 4.37
1168 1218 4.457496 CGTGCACTCCAGGGCGAT 62.457 66.667 16.19 0.00 0.00 4.58
1249 1299 1.743252 GCACCGAGGAGAAAGCAGG 60.743 63.158 0.00 0.00 0.00 4.85
1258 1308 4.697756 CCTTTGCCGCACCGAGGA 62.698 66.667 9.92 0.00 0.00 3.71
1428 1985 2.718073 CCCGTCCTAACCCAGACCG 61.718 68.421 0.00 0.00 0.00 4.79
1469 2063 0.320073 CAAAGGTCGTTGCCCGTCTA 60.320 55.000 0.00 0.00 37.94 2.59
1578 2172 1.078708 ACTGTACCCCCAAATCGCG 60.079 57.895 0.00 0.00 0.00 5.87
1800 2402 3.286353 TGCAGAAAACACCATGTCTTCA 58.714 40.909 0.00 0.00 0.00 3.02
1828 2435 7.996385 AGCTTTGCGAAAACCACTATAATATT 58.004 30.769 0.00 0.00 0.00 1.28
1829 2436 7.568199 AGCTTTGCGAAAACCACTATAATAT 57.432 32.000 0.00 0.00 0.00 1.28
1834 2441 4.082949 GGTTAGCTTTGCGAAAACCACTAT 60.083 41.667 12.20 0.00 39.06 2.12
1924 2534 6.662414 AATCTAACCAACACGTGTATCATG 57.338 37.500 23.69 16.16 0.00 3.07
1925 2535 8.826710 CAATAATCTAACCAACACGTGTATCAT 58.173 33.333 23.69 11.59 0.00 2.45
1989 2599 6.296026 GGCCTCCCTAAAATTCTTTGTTTTT 58.704 36.000 0.00 0.00 31.71 1.94
2006 2616 3.460868 CCAAAATGGCGGCCTCCC 61.461 66.667 21.46 5.77 0.00 4.30
2013 2623 3.652274 ACACAGAATTTCCAAAATGGCG 58.348 40.909 0.00 0.00 37.47 5.69
2024 2634 2.575694 TGTGCGCAAACACAGAATTT 57.424 40.000 14.00 0.00 45.36 1.82
2091 2702 4.068599 CTCTAGCAGAGTCACCATATCGA 58.931 47.826 0.00 0.00 37.57 3.59
2210 2821 3.316308 GCTTGAGATCACACACCAAAACT 59.684 43.478 0.00 0.00 0.00 2.66
2249 2860 0.893727 AAACCATGAACCCGGTGAGC 60.894 55.000 0.00 0.00 35.08 4.26
2250 2861 1.539827 GAAAACCATGAACCCGGTGAG 59.460 52.381 0.00 0.00 35.08 3.51
2251 2862 1.144093 AGAAAACCATGAACCCGGTGA 59.856 47.619 0.00 0.00 35.08 4.02
2259 2879 4.343814 GTGGAGGGAAAAGAAAACCATGAA 59.656 41.667 0.00 0.00 0.00 2.57
2306 2931 0.814410 TTTTCTGTGGCGCCGTGTAA 60.814 50.000 23.90 11.04 0.00 2.41
2337 2962 0.860618 GTCGTACGAGGTCGCATCAC 60.861 60.000 20.18 0.00 44.43 3.06
2497 3156 2.029844 GACTTGCCTGCGACAGTCC 61.030 63.158 0.00 0.00 0.00 3.85
2498 3157 1.005630 AGACTTGCCTGCGACAGTC 60.006 57.895 7.49 7.49 0.00 3.51
2499 3158 1.005630 GAGACTTGCCTGCGACAGT 60.006 57.895 6.19 0.00 0.00 3.55
2500 3159 2.091112 CGAGACTTGCCTGCGACAG 61.091 63.158 0.00 0.00 0.00 3.51
2501 3160 2.049156 CGAGACTTGCCTGCGACA 60.049 61.111 0.00 0.00 0.00 4.35
2502 3161 3.482783 GCGAGACTTGCCTGCGAC 61.483 66.667 2.95 0.00 0.00 5.19
2509 3168 2.626780 GGTTTGGGGCGAGACTTGC 61.627 63.158 6.09 6.09 0.00 4.01
2510 3169 0.323629 TAGGTTTGGGGCGAGACTTG 59.676 55.000 0.00 0.00 0.00 3.16
2511 3170 0.323957 GTAGGTTTGGGGCGAGACTT 59.676 55.000 0.00 0.00 0.00 3.01
2512 3171 0.544595 AGTAGGTTTGGGGCGAGACT 60.545 55.000 0.00 0.00 0.00 3.24
2513 3172 0.108281 GAGTAGGTTTGGGGCGAGAC 60.108 60.000 0.00 0.00 0.00 3.36
2514 3173 1.262640 GGAGTAGGTTTGGGGCGAGA 61.263 60.000 0.00 0.00 0.00 4.04
2515 3174 1.221021 GGAGTAGGTTTGGGGCGAG 59.779 63.158 0.00 0.00 0.00 5.03
2516 3175 0.041535 TAGGAGTAGGTTTGGGGCGA 59.958 55.000 0.00 0.00 0.00 5.54
2517 3176 0.464452 CTAGGAGTAGGTTTGGGGCG 59.536 60.000 0.00 0.00 0.00 6.13
2518 3177 1.875488 TCTAGGAGTAGGTTTGGGGC 58.125 55.000 0.00 0.00 0.00 5.80
2519 3178 5.427481 TGTTTATCTAGGAGTAGGTTTGGGG 59.573 44.000 0.00 0.00 0.00 4.96
2520 3179 6.555463 TGTTTATCTAGGAGTAGGTTTGGG 57.445 41.667 0.00 0.00 0.00 4.12
2521 3180 6.483640 GCATGTTTATCTAGGAGTAGGTTTGG 59.516 42.308 0.00 0.00 0.00 3.28
2567 3226 8.373220 GGGATTCCTCTATAAATAAACGGAAGA 58.627 37.037 2.01 0.00 33.14 2.87
2568 3227 7.606839 GGGGATTCCTCTATAAATAAACGGAAG 59.393 40.741 2.01 0.00 33.14 3.46
2692 3356 0.904865 AGACGAACCATGGCTCCTGA 60.905 55.000 13.04 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.