Multiple sequence alignment - TraesCS7A01G220500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G220500 chr7A 100.000 7497 0 0 1 7497 189009817 189002321 0.000000e+00 13845.0
1 TraesCS7A01G220500 chr7D 94.959 3511 145 14 322 3811 182601638 182605137 0.000000e+00 5474.0
2 TraesCS7A01G220500 chr7D 95.646 2067 71 10 5257 7308 182605464 182607526 0.000000e+00 3301.0
3 TraesCS7A01G220500 chr7D 94.213 553 18 2 3809 4361 508827583 508828121 0.000000e+00 832.0
4 TraesCS7A01G220500 chr7D 96.648 358 6 5 4693 5048 508828178 508828531 2.330000e-164 590.0
5 TraesCS7A01G220500 chr7D 96.861 223 6 1 5038 5259 182605129 182605351 9.190000e-99 372.0
6 TraesCS7A01G220500 chr7D 80.344 407 80 0 1025 1431 182602403 182602809 7.310000e-80 309.0
7 TraesCS7A01G220500 chr7D 87.209 258 29 3 4783 5037 149743704 149743960 2.650000e-74 291.0
8 TraesCS7A01G220500 chr7D 90.155 193 17 2 3812 4003 149743166 149743357 4.490000e-62 250.0
9 TraesCS7A01G220500 chr7D 88.166 169 7 5 7311 7478 182608441 182608597 9.930000e-44 189.0
10 TraesCS7A01G220500 chr7D 92.727 55 2 2 5397 5450 393867608 393867555 2.240000e-10 78.7
11 TraesCS7A01G220500 chr7B 93.495 3505 179 20 322 3811 151158756 151162226 0.000000e+00 5164.0
12 TraesCS7A01G220500 chr7B 94.449 2468 93 20 5040 7478 151162220 151164672 0.000000e+00 3759.0
13 TraesCS7A01G220500 chr7B 95.624 1234 49 4 3811 5041 488382193 488380962 0.000000e+00 1975.0
14 TraesCS7A01G220500 chr7B 93.984 1230 65 7 3812 5037 486708908 486710132 0.000000e+00 1853.0
15 TraesCS7A01G220500 chr7B 97.552 286 6 1 1 285 115751416 115751701 8.740000e-134 488.0
16 TraesCS7A01G220500 chr7B 80.102 392 78 0 1024 1415 151159492 151159883 7.360000e-75 292.0
17 TraesCS7A01G220500 chr4A 97.245 1234 27 5 3808 5036 38634888 38633657 0.000000e+00 2084.0
18 TraesCS7A01G220500 chr4A 96.928 293 9 0 1 293 729039627 729039919 6.760000e-135 492.0
19 TraesCS7A01G220500 chr4A 98.901 273 3 0 1 273 104132387 104132659 8.740000e-134 488.0
20 TraesCS7A01G220500 chr4A 97.794 272 6 0 1 272 725393000 725393271 3.170000e-128 470.0
21 TraesCS7A01G220500 chr4A 91.844 282 22 1 1 282 701572652 701572372 7.050000e-105 392.0
22 TraesCS7A01G220500 chr4A 96.078 51 1 1 5399 5449 240211609 240211560 1.730000e-11 82.4
23 TraesCS7A01G220500 chr4A 91.228 57 3 2 5394 5449 574109829 574109884 8.070000e-10 76.8
24 TraesCS7A01G220500 chr3D 95.528 1230 50 5 3812 5039 454805431 454806657 0.000000e+00 1962.0
25 TraesCS7A01G220500 chr3B 91.491 1234 85 11 3809 5037 100227679 100228897 0.000000e+00 1679.0
26 TraesCS7A01G220500 chr3B 92.857 56 2 2 5395 5449 557091176 557091122 6.240000e-11 80.5
27 TraesCS7A01G220500 chr6A 88.140 801 66 15 3812 4602 23718206 23717425 0.000000e+00 926.0
28 TraesCS7A01G220500 chr6A 95.740 446 17 2 4594 5038 23715950 23715506 0.000000e+00 717.0
29 TraesCS7A01G220500 chr6B 97.324 299 8 0 1 299 245979887 245979589 6.710000e-140 508.0
30 TraesCS7A01G220500 chr6B 98.195 277 5 0 2 278 652889569 652889845 1.130000e-132 484.0
31 TraesCS7A01G220500 chr3A 95.833 312 6 5 1 306 7458448 7458138 1.450000e-136 497.0
32 TraesCS7A01G220500 chr4B 98.201 278 5 0 1 278 315697749 315698026 3.140000e-133 486.0
33 TraesCS7A01G220500 chr1D 88.837 215 21 3 3812 4024 40862267 40862480 2.070000e-65 261.0
34 TraesCS7A01G220500 chr1D 84.116 277 35 7 4766 5038 40865191 40865462 7.460000e-65 259.0
35 TraesCS7A01G220500 chr1A 92.982 57 2 2 5394 5449 24599695 24599750 1.730000e-11 82.4
36 TraesCS7A01G220500 chr1A 94.231 52 1 2 5399 5449 32460416 32460366 2.240000e-10 78.7
37 TraesCS7A01G220500 chr1B 94.231 52 1 2 5399 5449 605914896 605914846 2.240000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G220500 chr7A 189002321 189009817 7496 True 13845.000000 13845 100.000000 1 7497 1 chr7A.!!$R1 7496
1 TraesCS7A01G220500 chr7D 182601638 182608597 6959 False 1929.000000 5474 91.195200 322 7478 5 chr7D.!!$F2 7156
2 TraesCS7A01G220500 chr7D 508827583 508828531 948 False 711.000000 832 95.430500 3809 5048 2 chr7D.!!$F3 1239
3 TraesCS7A01G220500 chr7D 149743166 149743960 794 False 270.500000 291 88.682000 3812 5037 2 chr7D.!!$F1 1225
4 TraesCS7A01G220500 chr7B 151158756 151164672 5916 False 3071.666667 5164 89.348667 322 7478 3 chr7B.!!$F3 7156
5 TraesCS7A01G220500 chr7B 488380962 488382193 1231 True 1975.000000 1975 95.624000 3811 5041 1 chr7B.!!$R1 1230
6 TraesCS7A01G220500 chr7B 486708908 486710132 1224 False 1853.000000 1853 93.984000 3812 5037 1 chr7B.!!$F2 1225
7 TraesCS7A01G220500 chr4A 38633657 38634888 1231 True 2084.000000 2084 97.245000 3808 5036 1 chr4A.!!$R1 1228
8 TraesCS7A01G220500 chr3D 454805431 454806657 1226 False 1962.000000 1962 95.528000 3812 5039 1 chr3D.!!$F1 1227
9 TraesCS7A01G220500 chr3B 100227679 100228897 1218 False 1679.000000 1679 91.491000 3809 5037 1 chr3B.!!$F1 1228
10 TraesCS7A01G220500 chr6A 23715506 23718206 2700 True 821.500000 926 91.940000 3812 5038 2 chr6A.!!$R1 1226
11 TraesCS7A01G220500 chr1D 40862267 40865462 3195 False 260.000000 261 86.476500 3812 5038 2 chr1D.!!$F1 1226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.032813 TTACCTCCTCTACCACCCCG 60.033 60.000 0.00 0.00 0.00 5.73 F
205 206 0.038599 TGTACCACCTCGAGTAGCCA 59.961 55.000 12.31 0.00 0.00 4.75 F
207 208 0.038599 TACCACCTCGAGTAGCCACA 59.961 55.000 12.31 0.00 0.00 4.17 F
1147 1158 0.038709 GCAGGATATCGAGCGCTCTT 60.039 55.000 32.88 22.57 0.00 2.85 F
1957 1968 0.178984 CATCACCCCATGGCTATGCA 60.179 55.000 6.09 0.00 32.79 3.96 F
2515 2535 2.738846 CCTTTCATGTTCTCACACTCGG 59.261 50.000 0.00 0.00 35.03 4.63 F
2786 2811 4.160439 TCATTATAGGGATGATGACGGAGC 59.840 45.833 0.00 0.00 34.15 4.70 F
3805 3833 1.142667 TGTCATTTCAGTCCAGGCACA 59.857 47.619 0.00 0.00 0.00 4.57 F
5286 9076 0.811915 CCACTGGACACCTAGACTCG 59.188 60.000 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1793 0.543277 CAAGCATCTACCTGGCCTCA 59.457 55.000 3.32 0.0 0.00 3.86 R
2078 2089 1.642112 TGGCATGGGAAATGAAAGCA 58.358 45.000 0.00 0.0 0.00 3.91 R
2146 2157 2.418368 TCACCAACTCAGCAACAAGT 57.582 45.000 0.00 0.0 0.00 3.16 R
2558 2578 2.660189 AGCATGAATTTTGAAGGCCG 57.340 45.000 0.00 0.0 0.00 6.13 R
3158 3185 0.033208 TCCAAATGCCCCTGACCATC 60.033 55.000 0.00 0.0 0.00 3.51 R
3443 3470 0.745845 CTGCCCGTCCTCTTGGATTG 60.746 60.000 0.00 0.0 45.29 2.67 R
4400 5748 1.748879 ACGCGTTGCATGCCCTAAT 60.749 52.632 16.68 0.0 0.00 1.73 R
5706 9500 1.417517 TCAAACCTCAAGAGAGCTGCA 59.582 47.619 1.02 0.0 40.68 4.41 R
6945 10758 0.107654 AGAAGGTCAATACGCAGCCC 60.108 55.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.493861 GTTACCTCCTCTACCACCCC 58.506 60.000 0.00 0.00 0.00 4.95
20 21 0.032813 TTACCTCCTCTACCACCCCG 60.033 60.000 0.00 0.00 0.00 5.73
21 22 1.941403 TACCTCCTCTACCACCCCGG 61.941 65.000 0.00 0.00 42.50 5.73
40 41 3.520290 GGTACGATTCCTGATGTCACA 57.480 47.619 0.00 0.00 0.00 3.58
41 42 3.187700 GGTACGATTCCTGATGTCACAC 58.812 50.000 0.00 0.00 0.00 3.82
42 43 3.119101 GGTACGATTCCTGATGTCACACT 60.119 47.826 0.00 0.00 0.00 3.55
43 44 3.685139 ACGATTCCTGATGTCACACTT 57.315 42.857 0.00 0.00 0.00 3.16
44 45 4.008074 ACGATTCCTGATGTCACACTTT 57.992 40.909 0.00 0.00 0.00 2.66
45 46 4.389374 ACGATTCCTGATGTCACACTTTT 58.611 39.130 0.00 0.00 0.00 2.27
46 47 4.452455 ACGATTCCTGATGTCACACTTTTC 59.548 41.667 0.00 0.00 0.00 2.29
47 48 4.692625 CGATTCCTGATGTCACACTTTTCT 59.307 41.667 0.00 0.00 0.00 2.52
48 49 5.180117 CGATTCCTGATGTCACACTTTTCTT 59.820 40.000 0.00 0.00 0.00 2.52
49 50 6.293626 CGATTCCTGATGTCACACTTTTCTTT 60.294 38.462 0.00 0.00 0.00 2.52
50 51 6.377327 TTCCTGATGTCACACTTTTCTTTC 57.623 37.500 0.00 0.00 0.00 2.62
51 52 5.684704 TCCTGATGTCACACTTTTCTTTCT 58.315 37.500 0.00 0.00 0.00 2.52
52 53 6.122277 TCCTGATGTCACACTTTTCTTTCTT 58.878 36.000 0.00 0.00 0.00 2.52
53 54 6.603201 TCCTGATGTCACACTTTTCTTTCTTT 59.397 34.615 0.00 0.00 0.00 2.52
54 55 7.122650 TCCTGATGTCACACTTTTCTTTCTTTT 59.877 33.333 0.00 0.00 0.00 2.27
55 56 7.761249 CCTGATGTCACACTTTTCTTTCTTTTT 59.239 33.333 0.00 0.00 0.00 1.94
82 83 3.781079 TTTGACAAGAGCACACTTTGG 57.219 42.857 0.00 0.00 0.00 3.28
83 84 1.024271 TGACAAGAGCACACTTTGGC 58.976 50.000 0.00 0.00 0.00 4.52
84 85 0.040958 GACAAGAGCACACTTTGGCG 60.041 55.000 0.00 0.00 34.54 5.69
85 86 1.370900 CAAGAGCACACTTTGGCGC 60.371 57.895 0.00 0.00 34.54 6.53
86 87 1.526917 AAGAGCACACTTTGGCGCT 60.527 52.632 7.64 0.00 42.05 5.92
87 88 1.789078 AAGAGCACACTTTGGCGCTG 61.789 55.000 7.64 0.00 40.11 5.18
88 89 2.516930 AGCACACTTTGGCGCTGT 60.517 55.556 7.64 0.00 30.57 4.40
89 90 2.353839 GCACACTTTGGCGCTGTG 60.354 61.111 19.16 19.16 38.68 3.66
90 91 2.332514 CACACTTTGGCGCTGTGG 59.667 61.111 16.53 4.49 36.16 4.17
91 92 2.124320 ACACTTTGGCGCTGTGGT 60.124 55.556 20.34 8.82 36.16 4.16
92 93 1.147376 ACACTTTGGCGCTGTGGTA 59.853 52.632 20.34 0.00 36.16 3.25
93 94 0.250727 ACACTTTGGCGCTGTGGTAT 60.251 50.000 20.34 0.27 36.16 2.73
94 95 1.002659 ACACTTTGGCGCTGTGGTATA 59.997 47.619 20.34 0.00 36.16 1.47
95 96 1.665679 CACTTTGGCGCTGTGGTATAG 59.334 52.381 7.64 0.00 0.00 1.31
96 97 0.657840 CTTTGGCGCTGTGGTATAGC 59.342 55.000 7.64 0.00 37.80 2.97
101 102 4.320971 GCTGTGGTATAGCGTCGG 57.679 61.111 0.00 0.07 0.00 4.79
102 103 1.949631 GCTGTGGTATAGCGTCGGC 60.950 63.158 12.53 12.53 40.37 5.54
103 104 1.299926 CTGTGGTATAGCGTCGGCC 60.300 63.158 0.00 0.00 41.24 6.13
104 105 2.354305 GTGGTATAGCGTCGGCCG 60.354 66.667 22.12 22.12 41.24 6.13
105 106 2.516695 TGGTATAGCGTCGGCCGA 60.517 61.111 27.28 27.28 41.24 5.54
106 107 1.900016 TGGTATAGCGTCGGCCGAT 60.900 57.895 33.58 18.77 41.24 4.18
107 108 1.443872 GGTATAGCGTCGGCCGATG 60.444 63.158 37.41 37.41 41.24 3.84
108 109 1.443872 GTATAGCGTCGGCCGATGG 60.444 63.158 40.21 30.62 41.24 3.51
109 110 2.632544 TATAGCGTCGGCCGATGGG 61.633 63.158 40.21 28.35 41.24 4.00
130 131 2.505982 GCCCATCTCGGCTTGCTA 59.494 61.111 0.00 0.00 46.10 3.49
131 132 1.072159 GCCCATCTCGGCTTGCTAT 59.928 57.895 0.00 0.00 46.10 2.97
132 133 1.233285 GCCCATCTCGGCTTGCTATG 61.233 60.000 0.00 0.00 46.10 2.23
133 134 0.604780 CCCATCTCGGCTTGCTATGG 60.605 60.000 0.00 0.00 37.44 2.74
134 135 1.233285 CCATCTCGGCTTGCTATGGC 61.233 60.000 0.00 0.00 39.26 4.40
139 140 2.511600 GGCTTGCTATGGCGACGT 60.512 61.111 0.00 0.00 42.25 4.34
140 141 1.227147 GGCTTGCTATGGCGACGTA 60.227 57.895 0.00 0.00 42.25 3.57
141 142 1.488261 GGCTTGCTATGGCGACGTAC 61.488 60.000 0.00 0.00 42.25 3.67
142 143 1.808234 GCTTGCTATGGCGACGTACG 61.808 60.000 15.01 15.01 45.66 3.67
143 144 0.248336 CTTGCTATGGCGACGTACGA 60.248 55.000 24.41 0.00 45.77 3.43
144 145 0.170784 TTGCTATGGCGACGTACGAA 59.829 50.000 24.41 0.00 45.77 3.85
145 146 0.382873 TGCTATGGCGACGTACGAAT 59.617 50.000 24.41 0.00 45.77 3.34
146 147 1.202325 TGCTATGGCGACGTACGAATT 60.202 47.619 24.41 0.00 45.77 2.17
147 148 1.856597 GCTATGGCGACGTACGAATTT 59.143 47.619 24.41 0.00 45.77 1.82
148 149 2.283351 GCTATGGCGACGTACGAATTTT 59.717 45.455 24.41 0.00 45.77 1.82
149 150 3.242188 GCTATGGCGACGTACGAATTTTT 60.242 43.478 24.41 0.00 45.77 1.94
150 151 2.580729 TGGCGACGTACGAATTTTTG 57.419 45.000 24.41 3.83 45.77 2.44
151 152 1.865970 TGGCGACGTACGAATTTTTGT 59.134 42.857 24.41 0.00 45.77 2.83
152 153 2.287373 TGGCGACGTACGAATTTTTGTT 59.713 40.909 24.41 0.00 45.77 2.83
153 154 3.492383 TGGCGACGTACGAATTTTTGTTA 59.508 39.130 24.41 0.00 45.77 2.41
154 155 3.834702 GGCGACGTACGAATTTTTGTTAC 59.165 43.478 24.41 0.00 45.77 2.50
155 156 4.444468 GCGACGTACGAATTTTTGTTACA 58.556 39.130 24.41 0.00 45.77 2.41
156 157 4.543177 GCGACGTACGAATTTTTGTTACAG 59.457 41.667 24.41 0.00 45.77 2.74
157 158 5.659426 CGACGTACGAATTTTTGTTACAGT 58.341 37.500 24.41 0.00 45.77 3.55
158 159 6.122125 CGACGTACGAATTTTTGTTACAGTT 58.878 36.000 24.41 0.00 45.77 3.16
159 160 6.624526 CGACGTACGAATTTTTGTTACAGTTT 59.375 34.615 24.41 0.00 45.77 2.66
160 161 7.162385 CGACGTACGAATTTTTGTTACAGTTTT 59.838 33.333 24.41 0.00 45.77 2.43
161 162 8.672214 ACGTACGAATTTTTGTTACAGTTTTT 57.328 26.923 24.41 0.00 0.00 1.94
162 163 8.577110 ACGTACGAATTTTTGTTACAGTTTTTG 58.423 29.630 24.41 0.00 0.00 2.44
163 164 8.577110 CGTACGAATTTTTGTTACAGTTTTTGT 58.423 29.630 10.44 0.00 43.96 2.83
167 168 9.758470 CGAATTTTTGTTACAGTTTTTGTATCG 57.242 29.630 0.00 0.00 41.72 2.92
169 170 9.804758 AATTTTTGTTACAGTTTTTGTATCGGA 57.195 25.926 0.00 0.00 41.72 4.55
170 171 8.617761 TTTTTGTTACAGTTTTTGTATCGGAC 57.382 30.769 0.00 0.00 41.72 4.79
171 172 5.927954 TGTTACAGTTTTTGTATCGGACC 57.072 39.130 0.00 0.00 41.72 4.46
172 173 4.448395 TGTTACAGTTTTTGTATCGGACCG 59.552 41.667 7.84 7.84 41.72 4.79
173 174 2.419667 ACAGTTTTTGTATCGGACCGG 58.580 47.619 15.25 0.00 38.56 5.28
174 175 1.129811 CAGTTTTTGTATCGGACCGGC 59.870 52.381 15.25 5.58 0.00 6.13
175 176 1.158434 GTTTTTGTATCGGACCGGCA 58.842 50.000 15.25 8.28 0.00 5.69
176 177 1.129811 GTTTTTGTATCGGACCGGCAG 59.870 52.381 15.25 0.00 0.00 4.85
177 178 0.609151 TTTTGTATCGGACCGGCAGA 59.391 50.000 15.25 0.49 0.00 4.26
178 179 0.108520 TTTGTATCGGACCGGCAGAC 60.109 55.000 15.25 3.56 0.00 3.51
179 180 0.968901 TTGTATCGGACCGGCAGACT 60.969 55.000 15.25 0.00 0.00 3.24
180 181 0.107066 TGTATCGGACCGGCAGACTA 60.107 55.000 15.25 0.00 0.00 2.59
181 182 1.027357 GTATCGGACCGGCAGACTAA 58.973 55.000 15.25 0.00 0.00 2.24
182 183 1.406539 GTATCGGACCGGCAGACTAAA 59.593 52.381 15.25 0.00 0.00 1.85
183 184 1.120530 ATCGGACCGGCAGACTAAAT 58.879 50.000 15.25 0.00 0.00 1.40
184 185 0.899720 TCGGACCGGCAGACTAAATT 59.100 50.000 15.25 0.00 0.00 1.82
185 186 1.276989 TCGGACCGGCAGACTAAATTT 59.723 47.619 15.25 0.00 0.00 1.82
186 187 2.081462 CGGACCGGCAGACTAAATTTT 58.919 47.619 5.81 0.00 0.00 1.82
187 188 2.159572 CGGACCGGCAGACTAAATTTTG 60.160 50.000 5.81 0.00 0.00 2.44
188 189 2.817844 GGACCGGCAGACTAAATTTTGT 59.182 45.455 0.00 4.91 0.00 2.83
189 190 4.004982 GGACCGGCAGACTAAATTTTGTA 58.995 43.478 0.00 0.00 0.00 2.41
190 191 4.142752 GGACCGGCAGACTAAATTTTGTAC 60.143 45.833 0.00 0.77 0.00 2.90
191 192 3.754850 ACCGGCAGACTAAATTTTGTACC 59.245 43.478 0.00 6.98 0.00 3.34
192 193 3.754323 CCGGCAGACTAAATTTTGTACCA 59.246 43.478 5.23 0.00 0.00 3.25
193 194 4.379082 CCGGCAGACTAAATTTTGTACCAC 60.379 45.833 5.23 0.00 0.00 4.16
194 195 4.379082 CGGCAGACTAAATTTTGTACCACC 60.379 45.833 5.23 4.83 0.00 4.61
195 196 4.765339 GGCAGACTAAATTTTGTACCACCT 59.235 41.667 5.23 0.00 0.00 4.00
196 197 5.106277 GGCAGACTAAATTTTGTACCACCTC 60.106 44.000 5.23 0.00 0.00 3.85
197 198 5.390567 GCAGACTAAATTTTGTACCACCTCG 60.391 44.000 5.23 0.00 0.00 4.63
198 199 5.929992 CAGACTAAATTTTGTACCACCTCGA 59.070 40.000 5.23 0.00 0.00 4.04
199 200 6.090898 CAGACTAAATTTTGTACCACCTCGAG 59.909 42.308 5.13 5.13 0.00 4.04
200 201 5.861727 ACTAAATTTTGTACCACCTCGAGT 58.138 37.500 12.31 0.00 0.00 4.18
201 202 6.996509 ACTAAATTTTGTACCACCTCGAGTA 58.003 36.000 12.31 0.00 0.00 2.59
202 203 7.095270 ACTAAATTTTGTACCACCTCGAGTAG 58.905 38.462 12.31 2.90 0.00 2.57
203 204 3.308438 TTTTGTACCACCTCGAGTAGC 57.692 47.619 12.31 0.00 0.00 3.58
204 205 1.180029 TTGTACCACCTCGAGTAGCC 58.820 55.000 12.31 0.00 0.00 3.93
205 206 0.038599 TGTACCACCTCGAGTAGCCA 59.961 55.000 12.31 0.00 0.00 4.75
206 207 0.455005 GTACCACCTCGAGTAGCCAC 59.545 60.000 12.31 0.00 0.00 5.01
207 208 0.038599 TACCACCTCGAGTAGCCACA 59.961 55.000 12.31 0.00 0.00 4.17
208 209 0.830444 ACCACCTCGAGTAGCCACAA 60.830 55.000 12.31 0.00 0.00 3.33
209 210 0.537188 CCACCTCGAGTAGCCACAAT 59.463 55.000 12.31 0.00 0.00 2.71
210 211 1.066143 CCACCTCGAGTAGCCACAATT 60.066 52.381 12.31 0.00 0.00 2.32
211 212 2.615493 CCACCTCGAGTAGCCACAATTT 60.615 50.000 12.31 0.00 0.00 1.82
212 213 3.369052 CCACCTCGAGTAGCCACAATTTA 60.369 47.826 12.31 0.00 0.00 1.40
213 214 4.250464 CACCTCGAGTAGCCACAATTTAA 58.750 43.478 12.31 0.00 0.00 1.52
214 215 4.693566 CACCTCGAGTAGCCACAATTTAAA 59.306 41.667 12.31 0.00 0.00 1.52
215 216 5.180492 CACCTCGAGTAGCCACAATTTAAAA 59.820 40.000 12.31 0.00 0.00 1.52
216 217 5.944007 ACCTCGAGTAGCCACAATTTAAAAT 59.056 36.000 12.31 0.00 0.00 1.82
217 218 7.065324 CACCTCGAGTAGCCACAATTTAAAATA 59.935 37.037 12.31 0.00 0.00 1.40
218 219 7.773690 ACCTCGAGTAGCCACAATTTAAAATAT 59.226 33.333 12.31 0.00 0.00 1.28
219 220 8.070171 CCTCGAGTAGCCACAATTTAAAATATG 58.930 37.037 12.31 0.00 0.00 1.78
220 221 8.725405 TCGAGTAGCCACAATTTAAAATATGA 57.275 30.769 0.00 0.00 0.00 2.15
221 222 9.168451 TCGAGTAGCCACAATTTAAAATATGAA 57.832 29.630 0.00 0.00 0.00 2.57
222 223 9.781834 CGAGTAGCCACAATTTAAAATATGAAA 57.218 29.630 0.00 0.00 0.00 2.69
224 225 9.567848 AGTAGCCACAATTTAAAATATGAAACG 57.432 29.630 0.00 0.00 0.00 3.60
225 226 9.562583 GTAGCCACAATTTAAAATATGAAACGA 57.437 29.630 0.00 0.00 0.00 3.85
226 227 8.460831 AGCCACAATTTAAAATATGAAACGAC 57.539 30.769 0.00 0.00 0.00 4.34
227 228 8.085296 AGCCACAATTTAAAATATGAAACGACA 58.915 29.630 0.00 0.00 0.00 4.35
228 229 8.868916 GCCACAATTTAAAATATGAAACGACAT 58.131 29.630 0.00 0.00 0.00 3.06
234 235 8.682128 TTTAAAATATGAAACGACATCCAAGC 57.318 30.769 0.00 0.00 0.00 4.01
235 236 4.536364 AATATGAAACGACATCCAAGCG 57.464 40.909 0.00 0.00 0.00 4.68
236 237 1.086696 ATGAAACGACATCCAAGCGG 58.913 50.000 0.00 0.00 0.00 5.52
237 238 0.953471 TGAAACGACATCCAAGCGGG 60.953 55.000 0.00 0.00 38.37 6.13
256 257 4.877323 GGGACGAAACCAAGAATATCAC 57.123 45.455 0.00 0.00 0.00 3.06
257 258 3.626217 GGGACGAAACCAAGAATATCACC 59.374 47.826 0.00 0.00 0.00 4.02
258 259 4.514401 GGACGAAACCAAGAATATCACCT 58.486 43.478 0.00 0.00 0.00 4.00
259 260 4.941873 GGACGAAACCAAGAATATCACCTT 59.058 41.667 0.00 0.00 0.00 3.50
260 261 5.163754 GGACGAAACCAAGAATATCACCTTG 60.164 44.000 0.00 0.00 39.43 3.61
261 262 4.156008 ACGAAACCAAGAATATCACCTTGC 59.844 41.667 0.00 0.00 38.65 4.01
262 263 4.396166 CGAAACCAAGAATATCACCTTGCT 59.604 41.667 0.00 0.00 38.65 3.91
263 264 5.106157 CGAAACCAAGAATATCACCTTGCTT 60.106 40.000 0.00 0.00 38.65 3.91
264 265 6.570378 CGAAACCAAGAATATCACCTTGCTTT 60.570 38.462 0.00 0.00 38.65 3.51
265 266 7.361713 CGAAACCAAGAATATCACCTTGCTTTA 60.362 37.037 0.00 0.00 38.65 1.85
266 267 7.775053 AACCAAGAATATCACCTTGCTTTAA 57.225 32.000 0.00 0.00 38.65 1.52
267 268 7.961326 ACCAAGAATATCACCTTGCTTTAAT 57.039 32.000 0.00 0.00 38.65 1.40
268 269 9.474313 AACCAAGAATATCACCTTGCTTTAATA 57.526 29.630 0.00 0.00 38.65 0.98
269 270 9.125026 ACCAAGAATATCACCTTGCTTTAATAG 57.875 33.333 0.00 0.00 38.65 1.73
270 271 9.125026 CCAAGAATATCACCTTGCTTTAATAGT 57.875 33.333 0.00 0.00 38.65 2.12
345 346 2.234908 CCAACCTTCTCTCGTCCTGATT 59.765 50.000 0.00 0.00 0.00 2.57
579 583 0.322456 CTTGCTGGTTTGGATCGGGA 60.322 55.000 0.00 0.00 0.00 5.14
661 665 4.980805 TGCTGGTTCGGTGCCGTC 62.981 66.667 10.60 5.45 40.74 4.79
699 703 1.500396 GTCCGTTCCGTGATTTGGC 59.500 57.895 0.00 0.00 0.00 4.52
716 720 2.625823 GCCGTGATTGGTGGTGGTG 61.626 63.158 0.00 0.00 0.00 4.17
717 721 1.971167 CCGTGATTGGTGGTGGTGG 60.971 63.158 0.00 0.00 0.00 4.61
718 722 1.228124 CGTGATTGGTGGTGGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
729 733 0.881118 GGTGGTGGTACATGCTGTTG 59.119 55.000 0.00 0.00 44.52 3.33
804 814 1.521457 GCATGTGGCTGTAGCGCTA 60.521 57.895 14.45 14.45 43.26 4.26
821 831 8.765219 TGTAGCGCTAAGATGAATCTTTATTTC 58.235 33.333 20.73 0.17 44.28 2.17
945 955 3.801114 TCAGGACGATGTGGTGAATAG 57.199 47.619 0.00 0.00 0.00 1.73
977 987 7.346751 TCTTGTCTAAGAATTGTTGCCTTTT 57.653 32.000 0.00 0.00 39.89 2.27
979 989 5.288804 TGTCTAAGAATTGTTGCCTTTTGC 58.711 37.500 0.00 0.00 41.77 3.68
1037 1048 2.432628 GAACTCGACGGTGCCCAG 60.433 66.667 0.00 0.00 0.00 4.45
1132 1143 1.005748 TCTGTTGACGCAGAGCAGG 60.006 57.895 0.00 0.00 40.23 4.85
1135 1146 0.894835 TGTTGACGCAGAGCAGGATA 59.105 50.000 0.00 0.00 0.00 2.59
1146 1157 0.893270 AGCAGGATATCGAGCGCTCT 60.893 55.000 32.88 19.27 0.00 4.09
1147 1158 0.038709 GCAGGATATCGAGCGCTCTT 60.039 55.000 32.88 22.57 0.00 2.85
1149 1160 1.268079 CAGGATATCGAGCGCTCTTCA 59.732 52.381 32.88 18.14 0.00 3.02
1205 1216 2.270205 CCAGCATGTCGAGGGCTT 59.730 61.111 2.89 0.00 35.27 4.35
1206 1217 2.110967 CCAGCATGTCGAGGGCTTG 61.111 63.158 2.89 0.00 35.27 4.01
1224 1235 3.234630 GACAGCGCCTGTGGTGGTA 62.235 63.158 15.61 0.00 45.44 3.25
1255 1266 1.229975 TGTCAACGCAGACCAGCATG 61.230 55.000 5.51 0.00 37.73 4.06
1305 1316 0.958876 CAGAGGCAGCTGTCAATGCA 60.959 55.000 22.50 0.00 44.37 3.96
1356 1367 2.266055 GTGGTTCCAGAGGAGGCG 59.734 66.667 0.00 0.00 31.21 5.52
1428 1439 4.684484 TGAAGCAGATGTAGATGCAGAT 57.316 40.909 0.00 0.00 45.01 2.90
1498 1509 1.541588 CTGACGCGGATCATCCTATCA 59.458 52.381 12.47 1.89 33.30 2.15
1541 1552 2.421529 GGAAGCACGGGTAATCCATTCT 60.422 50.000 1.32 0.00 34.36 2.40
1547 1558 5.299279 AGCACGGGTAATCCATTCTAATTTG 59.701 40.000 0.00 0.00 34.36 2.32
1635 1646 7.965107 GCTTTCAATGATTGTTAGGTAGTGAAG 59.035 37.037 4.93 0.00 28.95 3.02
1641 1652 8.894768 ATGATTGTTAGGTAGTGAAGCTTATC 57.105 34.615 0.00 0.00 37.13 1.75
1670 1681 2.158943 GCATGGGTACTTGGGTAGAGAC 60.159 54.545 0.00 0.00 0.00 3.36
1671 1682 3.104512 CATGGGTACTTGGGTAGAGACA 58.895 50.000 0.00 0.00 0.00 3.41
1719 1730 5.656416 CCATGTTACCTGGACAATAATTGGT 59.344 40.000 0.00 0.00 35.70 3.67
1765 1776 2.070539 GGCTATTGCTGCATTGGTTGC 61.071 52.381 1.84 3.24 43.19 4.17
1767 1778 5.790003 GGCTATTGCTGCATTGGTTGCTT 62.790 47.826 1.84 0.00 43.25 3.91
1782 1793 4.887071 TGGTTGCTTGTATGAGTTTGAAGT 59.113 37.500 0.00 0.00 0.00 3.01
1871 1882 3.665745 AGAATCCAACAACCATTGTGC 57.334 42.857 0.00 0.00 44.59 4.57
1876 1887 1.600164 CCAACAACCATTGTGCTGACG 60.600 52.381 0.00 0.00 44.59 4.35
1901 1912 5.980116 CACATTTTTCCGTCCATTAAACACA 59.020 36.000 0.00 0.00 0.00 3.72
1957 1968 0.178984 CATCACCCCATGGCTATGCA 60.179 55.000 6.09 0.00 32.79 3.96
2043 2054 7.935405 ACCCTGTATTTCCCTAGAATTTGTAA 58.065 34.615 0.00 0.00 0.00 2.41
2078 2089 9.547753 GATCTATTACATCACTACATTGTGGTT 57.452 33.333 2.68 0.00 38.40 3.67
2082 2093 4.144297 ACATCACTACATTGTGGTTGCTT 58.856 39.130 2.68 0.00 38.40 3.91
2139 2150 7.307930 GGCGATGTTGTATATTCATTGTGATCA 60.308 37.037 0.00 0.00 0.00 2.92
2146 2157 9.447157 TTGTATATTCATTGTGATCACTGTCAA 57.553 29.630 25.55 12.61 0.00 3.18
2195 2206 8.021396 GCTTGAATAGAACCAAGTTCGTAATTT 58.979 33.333 0.00 0.00 45.96 1.82
2261 2272 6.036577 TGTTTATGAGTGCAGAGATGTGTA 57.963 37.500 0.00 0.00 0.00 2.90
2287 2298 5.238583 TCTTCTTTTCTTCGAGGAACCATC 58.761 41.667 9.80 0.00 0.00 3.51
2367 2385 6.101650 TCAAGACAGATTGTATGTGTGAGT 57.898 37.500 0.00 0.00 36.84 3.41
2515 2535 2.738846 CCTTTCATGTTCTCACACTCGG 59.261 50.000 0.00 0.00 35.03 4.63
2786 2811 4.160439 TCATTATAGGGATGATGACGGAGC 59.840 45.833 0.00 0.00 34.15 4.70
2874 2899 6.501805 TCTGGTATAATACTGGATCCATTGCT 59.498 38.462 16.63 4.02 0.00 3.91
2970 2995 6.317088 ACTTCATGCTTCATATTTGTGTTCG 58.683 36.000 0.00 0.00 0.00 3.95
3003 3028 8.703336 GCAATTTGTAATTCAGTTTTCTTCCTC 58.297 33.333 0.00 0.00 0.00 3.71
3146 3173 5.049954 GGTTGATTTAGCTGTTCACGTGTTA 60.050 40.000 16.51 1.96 0.00 2.41
3158 3185 6.943981 TGTTCACGTGTTATTTTCAAGAGAG 58.056 36.000 16.51 0.00 0.00 3.20
3358 3385 6.510157 CGTTGTATTGGCTATGTTCATCAGAC 60.510 42.308 0.00 0.00 0.00 3.51
3443 3470 4.581824 TGAATATTCTGAGGCTCAAATGGC 59.418 41.667 19.29 13.24 0.00 4.40
3444 3471 2.519771 ATTCTGAGGCTCAAATGGCA 57.480 45.000 19.29 0.00 34.73 4.92
3477 3504 2.446435 GGGCAGCAACAGAATTCCTTA 58.554 47.619 0.65 0.00 0.00 2.69
3533 3560 6.539826 CAGCTCAATGATGGTACTGTTATGAA 59.460 38.462 0.00 0.00 0.00 2.57
3587 3615 9.427127 GATAATTTGTCTCGAGTCTTAATTTGC 57.573 33.333 13.13 8.70 0.00 3.68
3595 3623 4.152402 TCGAGTCTTAATTTGCTGCTGTTC 59.848 41.667 0.00 0.00 0.00 3.18
3687 3715 3.727391 TCTCATATGGTCCCAGACTCCTA 59.273 47.826 2.13 0.00 32.47 2.94
3778 3806 7.918076 TGACCTTTAAGAATATGAACTGGACT 58.082 34.615 0.00 0.00 0.00 3.85
3792 3820 8.641498 ATGAACTGGACTCTTTTATGTCATTT 57.359 30.769 0.00 0.00 35.11 2.32
3804 3832 1.896220 TGTCATTTCAGTCCAGGCAC 58.104 50.000 0.00 0.00 0.00 5.01
3805 3833 1.142667 TGTCATTTCAGTCCAGGCACA 59.857 47.619 0.00 0.00 0.00 4.57
3806 3834 2.229792 GTCATTTCAGTCCAGGCACAA 58.770 47.619 0.00 0.00 0.00 3.33
3807 3835 2.622942 GTCATTTCAGTCCAGGCACAAA 59.377 45.455 0.00 0.00 0.00 2.83
4400 5748 1.867865 TCGTCGTGCATGTTTTTAGCA 59.132 42.857 5.68 0.00 35.63 3.49
4401 5749 2.482336 TCGTCGTGCATGTTTTTAGCAT 59.518 40.909 5.68 0.00 40.78 3.79
4775 8440 3.602483 ACGCGGTGGTAAAATTGTAGAT 58.398 40.909 12.47 0.00 0.00 1.98
4814 8481 5.290643 GCTCATGTAGTCAAGACAGAACATC 59.709 44.000 2.72 0.00 32.73 3.06
5235 8910 5.296748 GTTTTGAATTGCTTGTGGGTATGT 58.703 37.500 0.00 0.00 0.00 2.29
5286 9076 0.811915 CCACTGGACACCTAGACTCG 59.188 60.000 0.00 0.00 0.00 4.18
5337 9127 4.713553 TCAAAGCTGATGTGGACAAACTA 58.286 39.130 0.00 0.00 0.00 2.24
5342 9132 4.772624 AGCTGATGTGGACAAACTACTCTA 59.227 41.667 0.00 0.00 0.00 2.43
5345 9135 4.772624 TGATGTGGACAAACTACTCTAGCT 59.227 41.667 0.00 0.00 0.00 3.32
5546 9340 4.871933 TCTACTGAGATTTGCACACTCA 57.128 40.909 13.49 13.49 38.16 3.41
5605 9399 6.404074 CCACTTGAATTCATAGAAGACCTTGC 60.404 42.308 9.40 0.00 0.00 4.01
5607 9401 6.373774 ACTTGAATTCATAGAAGACCTTGCAG 59.626 38.462 9.40 0.85 0.00 4.41
5623 9417 3.451141 TGCAGATTTGTTGGTTCAACC 57.549 42.857 0.00 0.00 42.96 3.77
5661 9455 9.685828 GTTAAGAGGTGATATCTGATGTACTTC 57.314 37.037 3.98 1.85 0.00 3.01
5706 9500 6.762187 TGTGATCATTTTGTTTGCACATTTCT 59.238 30.769 0.00 0.00 31.06 2.52
5770 9564 2.624838 CAAAGGCTTTGTGAGGTGATGT 59.375 45.455 27.72 0.00 35.94 3.06
5787 9581 7.184862 AGGTGATGTATTTTCCCTTTGAATCT 58.815 34.615 0.00 0.00 31.67 2.40
5813 9607 8.198109 TGCTTCTAAAGTTTCTATTAGCGATCT 58.802 33.333 0.00 0.00 0.00 2.75
5814 9608 8.484008 GCTTCTAAAGTTTCTATTAGCGATCTG 58.516 37.037 0.00 0.00 0.00 2.90
5815 9609 9.522804 CTTCTAAAGTTTCTATTAGCGATCTGT 57.477 33.333 0.00 0.00 0.00 3.41
5872 9678 2.935201 TGCATTGGTGTTGCTTCAAAAC 59.065 40.909 0.00 0.00 40.77 2.43
5890 9696 6.211515 TCAAAACGAGTCTTACACTAGTTCC 58.788 40.000 0.00 0.00 46.83 3.62
5991 9797 5.769662 TGCTAACTGAACTTTCACCATCATT 59.230 36.000 0.00 0.00 32.90 2.57
5993 9799 7.147976 GCTAACTGAACTTTCACCATCATTTT 58.852 34.615 0.00 0.00 32.90 1.82
6054 9860 4.079253 ACTTGTCCATTTATTGAGCCGTT 58.921 39.130 0.00 0.00 0.00 4.44
6084 9890 7.226720 TGAAATAGCAGCTAGTAGGTTAAATGC 59.773 37.037 8.43 0.00 0.00 3.56
6419 10225 6.681368 GCCTGATCAAATTCCAGATGTTAACC 60.681 42.308 2.48 0.00 0.00 2.85
6425 10231 3.328382 TTCCAGATGTTAACCCTGACG 57.672 47.619 20.29 9.46 0.00 4.35
6570 10376 3.309138 CAGCTATTGTGACATCTCTGTGC 59.691 47.826 0.00 0.00 35.14 4.57
6608 10414 0.461870 TGGTTCTCCCATGAATCGCG 60.462 55.000 0.00 0.00 38.72 5.87
6632 10438 5.632427 GCCCATAGACAATATGATTAGGGGG 60.632 48.000 13.29 0.00 34.19 5.40
6640 10446 1.213296 ATGATTAGGGGGTCGTGCTT 58.787 50.000 0.00 0.00 0.00 3.91
6649 10455 2.361789 GGGGTCGTGCTTTATGCTTTA 58.638 47.619 0.00 0.00 43.37 1.85
6945 10758 8.702438 CATTTTTACTGTGAAGCAATTAACCTG 58.298 33.333 0.00 0.00 0.00 4.00
6989 10802 3.181445 TGTTTCTTAGCACATCCCACTGT 60.181 43.478 0.00 0.00 0.00 3.55
6991 10804 2.256306 TCTTAGCACATCCCACTGTCA 58.744 47.619 0.00 0.00 0.00 3.58
7019 10832 0.871722 TGTTTATGAGTGCACGCCAC 59.128 50.000 18.33 9.75 45.01 5.01
7124 10937 5.688621 GTGTTAAACTGACGATGTGACACTA 59.311 40.000 7.20 0.00 0.00 2.74
7134 10947 4.253685 CGATGTGACACTAACCAGGATTT 58.746 43.478 7.20 0.00 0.00 2.17
7182 10995 1.996191 GCTCTTGGACTTGTGTCGATC 59.004 52.381 0.00 0.00 43.79 3.69
7269 11082 3.872511 TGAATGGCGATGCATTTCTTT 57.127 38.095 0.00 0.00 0.00 2.52
7309 12034 9.053840 CACTGGATTAGTAAGAGAGTACGATTA 57.946 37.037 0.00 0.00 37.60 1.75
7330 12055 9.632969 CGATTATAAGGTGTTCTACGATTTTTG 57.367 33.333 0.00 0.00 0.00 2.44
7341 12066 8.324567 TGTTCTACGATTTTTGCAAATGAAAAC 58.675 29.630 13.65 9.89 32.35 2.43
7368 12093 7.329226 CACTTGTTCCATGGATTATTTTGTGTC 59.671 37.037 17.06 0.00 0.00 3.67
7370 12095 5.105957 TGTTCCATGGATTATTTTGTGTCGG 60.106 40.000 17.06 0.00 0.00 4.79
7371 12096 4.849518 TCCATGGATTATTTTGTGTCGGA 58.150 39.130 11.44 0.00 0.00 4.55
7372 12097 4.881273 TCCATGGATTATTTTGTGTCGGAG 59.119 41.667 11.44 0.00 0.00 4.63
7374 12099 5.125417 CCATGGATTATTTTGTGTCGGAGTT 59.875 40.000 5.56 0.00 0.00 3.01
7375 12100 5.873179 TGGATTATTTTGTGTCGGAGTTC 57.127 39.130 0.00 0.00 0.00 3.01
7376 12101 5.556915 TGGATTATTTTGTGTCGGAGTTCT 58.443 37.500 0.00 0.00 0.00 3.01
7378 12107 7.335627 TGGATTATTTTGTGTCGGAGTTCTAT 58.664 34.615 0.00 0.00 0.00 1.98
7390 12123 3.372206 CGGAGTTCTATTGGCAACTCTTG 59.628 47.826 14.11 5.74 45.38 3.02
7391 12124 4.327680 GGAGTTCTATTGGCAACTCTTGT 58.672 43.478 14.11 0.00 45.38 3.16
7392 12125 5.488341 GGAGTTCTATTGGCAACTCTTGTA 58.512 41.667 14.11 0.00 45.38 2.41
7393 12126 6.116126 GGAGTTCTATTGGCAACTCTTGTAT 58.884 40.000 14.11 0.00 45.38 2.29
7394 12127 6.599638 GGAGTTCTATTGGCAACTCTTGTATT 59.400 38.462 14.11 0.00 45.38 1.89
7395 12128 7.121315 GGAGTTCTATTGGCAACTCTTGTATTT 59.879 37.037 14.11 0.00 45.38 1.40
7396 12129 8.409358 AGTTCTATTGGCAACTCTTGTATTTT 57.591 30.769 0.00 0.00 37.61 1.82
7397 12130 8.860088 AGTTCTATTGGCAACTCTTGTATTTTT 58.140 29.630 0.00 0.00 37.61 1.94
7460 12193 8.992073 TGTCATATATTCACCATTCTTTCATCG 58.008 33.333 0.00 0.00 0.00 3.84
7481 12214 9.817809 TCATCGGTAAATGATATTTATCCTAGC 57.182 33.333 0.00 0.00 30.76 3.42
7482 12215 9.599866 CATCGGTAAATGATATTTATCCTAGCA 57.400 33.333 0.00 0.00 31.71 3.49
7483 12216 8.997621 TCGGTAAATGATATTTATCCTAGCAC 57.002 34.615 0.00 0.00 31.71 4.40
7484 12217 8.038944 TCGGTAAATGATATTTATCCTAGCACC 58.961 37.037 0.00 0.00 31.71 5.01
7485 12218 8.041323 CGGTAAATGATATTTATCCTAGCACCT 58.959 37.037 0.00 0.00 31.71 4.00
7486 12219 9.740710 GGTAAATGATATTTATCCTAGCACCTT 57.259 33.333 0.00 0.00 31.71 3.50
7492 12225 9.547279 TGATATTTATCCTAGCACCTTATGAGA 57.453 33.333 0.00 0.00 31.71 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.493861 GGGGTGGTAGAGGAGGTAAC 58.506 60.000 0.00 0.00 0.00 2.50
2 3 1.616921 CGGGGTGGTAGAGGAGGTA 59.383 63.158 0.00 0.00 0.00 3.08
3 4 2.363361 CGGGGTGGTAGAGGAGGT 59.637 66.667 0.00 0.00 0.00 3.85
4 5 2.444140 CCGGGGTGGTAGAGGAGG 60.444 72.222 0.00 0.00 0.00 4.30
13 14 2.062177 AGGAATCGTACCGGGGTGG 61.062 63.158 6.32 0.00 46.41 4.61
14 15 1.143183 CAGGAATCGTACCGGGGTG 59.857 63.158 6.32 0.00 0.00 4.61
15 16 0.398098 ATCAGGAATCGTACCGGGGT 60.398 55.000 6.32 0.00 0.00 4.95
16 17 0.033504 CATCAGGAATCGTACCGGGG 59.966 60.000 6.32 0.00 0.00 5.73
17 18 0.750850 ACATCAGGAATCGTACCGGG 59.249 55.000 6.32 0.00 0.00 5.73
18 19 1.407618 TGACATCAGGAATCGTACCGG 59.592 52.381 0.00 0.00 0.00 5.28
19 20 2.159296 TGTGACATCAGGAATCGTACCG 60.159 50.000 0.00 0.00 0.00 4.02
20 21 3.119101 AGTGTGACATCAGGAATCGTACC 60.119 47.826 0.00 0.00 0.00 3.34
21 22 4.111375 AGTGTGACATCAGGAATCGTAC 57.889 45.455 0.00 0.00 0.00 3.67
22 23 4.801330 AAGTGTGACATCAGGAATCGTA 57.199 40.909 0.00 0.00 0.00 3.43
23 24 3.685139 AAGTGTGACATCAGGAATCGT 57.315 42.857 0.00 0.00 0.00 3.73
24 25 4.692625 AGAAAAGTGTGACATCAGGAATCG 59.307 41.667 0.00 0.00 0.00 3.34
25 26 6.566197 AAGAAAAGTGTGACATCAGGAATC 57.434 37.500 0.00 0.00 0.00 2.52
26 27 6.774656 AGAAAGAAAAGTGTGACATCAGGAAT 59.225 34.615 0.00 0.00 0.00 3.01
27 28 6.122277 AGAAAGAAAAGTGTGACATCAGGAA 58.878 36.000 0.00 0.00 0.00 3.36
28 29 5.684704 AGAAAGAAAAGTGTGACATCAGGA 58.315 37.500 0.00 0.00 0.00 3.86
29 30 6.382869 AAGAAAGAAAAGTGTGACATCAGG 57.617 37.500 0.00 0.00 0.00 3.86
30 31 8.693542 AAAAAGAAAGAAAAGTGTGACATCAG 57.306 30.769 0.00 0.00 0.00 2.90
60 61 4.493547 CCAAAGTGTGCTCTTGTCAAAAA 58.506 39.130 0.00 0.00 0.00 1.94
61 62 3.675775 GCCAAAGTGTGCTCTTGTCAAAA 60.676 43.478 0.00 0.00 0.00 2.44
62 63 2.159254 GCCAAAGTGTGCTCTTGTCAAA 60.159 45.455 0.00 0.00 0.00 2.69
63 64 1.405105 GCCAAAGTGTGCTCTTGTCAA 59.595 47.619 0.00 0.00 0.00 3.18
64 65 1.024271 GCCAAAGTGTGCTCTTGTCA 58.976 50.000 0.00 0.00 0.00 3.58
65 66 0.040958 CGCCAAAGTGTGCTCTTGTC 60.041 55.000 0.00 0.00 0.00 3.18
66 67 2.024918 CGCCAAAGTGTGCTCTTGT 58.975 52.632 0.00 0.00 0.00 3.16
67 68 1.370900 GCGCCAAAGTGTGCTCTTG 60.371 57.895 0.00 0.00 38.69 3.02
68 69 3.034030 GCGCCAAAGTGTGCTCTT 58.966 55.556 0.00 0.00 38.69 2.85
72 73 2.353839 CACAGCGCCAAAGTGTGC 60.354 61.111 12.92 0.00 42.02 4.57
73 74 1.163420 TACCACAGCGCCAAAGTGTG 61.163 55.000 17.17 17.17 41.09 3.82
74 75 0.250727 ATACCACAGCGCCAAAGTGT 60.251 50.000 2.29 0.00 0.00 3.55
75 76 1.665679 CTATACCACAGCGCCAAAGTG 59.334 52.381 2.29 8.40 0.00 3.16
76 77 2.012051 GCTATACCACAGCGCCAAAGT 61.012 52.381 2.29 0.00 0.00 2.66
77 78 0.657840 GCTATACCACAGCGCCAAAG 59.342 55.000 2.29 0.00 0.00 2.77
78 79 2.775351 GCTATACCACAGCGCCAAA 58.225 52.632 2.29 0.00 0.00 3.28
79 80 4.532490 GCTATACCACAGCGCCAA 57.468 55.556 2.29 0.00 0.00 4.52
84 85 1.949631 GCCGACGCTATACCACAGC 60.950 63.158 0.00 0.00 35.61 4.40
85 86 1.299926 GGCCGACGCTATACCACAG 60.300 63.158 0.00 0.00 34.44 3.66
86 87 2.809706 GGCCGACGCTATACCACA 59.190 61.111 0.00 0.00 34.44 4.17
87 88 2.138656 ATCGGCCGACGCTATACCAC 62.139 60.000 33.75 0.00 43.86 4.16
88 89 1.900016 ATCGGCCGACGCTATACCA 60.900 57.895 33.75 3.58 43.86 3.25
89 90 1.443872 CATCGGCCGACGCTATACC 60.444 63.158 33.75 0.00 43.86 2.73
90 91 1.443872 CCATCGGCCGACGCTATAC 60.444 63.158 33.75 0.00 43.86 1.47
91 92 2.632544 CCCATCGGCCGACGCTATA 61.633 63.158 33.75 6.41 43.86 1.31
92 93 3.991051 CCCATCGGCCGACGCTAT 61.991 66.667 33.75 12.09 43.86 2.97
114 115 0.604780 CCATAGCAAGCCGAGATGGG 60.605 60.000 0.00 0.00 38.63 4.00
115 116 1.233285 GCCATAGCAAGCCGAGATGG 61.233 60.000 7.94 7.94 40.11 3.51
116 117 1.563435 CGCCATAGCAAGCCGAGATG 61.563 60.000 0.00 0.00 39.83 2.90
117 118 1.301244 CGCCATAGCAAGCCGAGAT 60.301 57.895 0.00 0.00 39.83 2.75
118 119 2.106938 CGCCATAGCAAGCCGAGA 59.893 61.111 0.00 0.00 39.83 4.04
119 120 2.106938 TCGCCATAGCAAGCCGAG 59.893 61.111 0.00 0.00 39.83 4.63
120 121 2.202878 GTCGCCATAGCAAGCCGA 60.203 61.111 0.00 0.00 39.83 5.54
121 122 2.947118 TACGTCGCCATAGCAAGCCG 62.947 60.000 0.00 0.00 39.83 5.52
122 123 1.227147 TACGTCGCCATAGCAAGCC 60.227 57.895 0.00 0.00 39.83 4.35
123 124 1.808234 CGTACGTCGCCATAGCAAGC 61.808 60.000 7.22 0.00 39.83 4.01
124 125 0.248336 TCGTACGTCGCCATAGCAAG 60.248 55.000 16.05 0.00 39.83 4.01
125 126 0.170784 TTCGTACGTCGCCATAGCAA 59.829 50.000 16.05 0.00 39.83 3.91
126 127 0.382873 ATTCGTACGTCGCCATAGCA 59.617 50.000 16.05 0.00 39.83 3.49
127 128 1.484356 AATTCGTACGTCGCCATAGC 58.516 50.000 16.05 0.00 39.67 2.97
128 129 4.201647 ACAAAAATTCGTACGTCGCCATAG 60.202 41.667 16.05 3.53 39.67 2.23
129 130 3.679025 ACAAAAATTCGTACGTCGCCATA 59.321 39.130 16.05 0.00 39.67 2.74
130 131 2.481185 ACAAAAATTCGTACGTCGCCAT 59.519 40.909 16.05 0.00 39.67 4.40
131 132 1.865970 ACAAAAATTCGTACGTCGCCA 59.134 42.857 16.05 0.00 39.67 5.69
132 133 2.582446 ACAAAAATTCGTACGTCGCC 57.418 45.000 16.05 0.00 39.67 5.54
133 134 4.444468 TGTAACAAAAATTCGTACGTCGC 58.556 39.130 16.05 0.00 39.67 5.19
134 135 5.659426 ACTGTAACAAAAATTCGTACGTCG 58.341 37.500 16.05 0.00 41.41 5.12
135 136 7.881516 AAACTGTAACAAAAATTCGTACGTC 57.118 32.000 16.05 0.00 0.00 4.34
136 137 8.577110 CAAAAACTGTAACAAAAATTCGTACGT 58.423 29.630 16.05 0.00 0.00 3.57
137 138 8.577110 ACAAAAACTGTAACAAAAATTCGTACG 58.423 29.630 9.53 9.53 36.10 3.67
141 142 9.758470 CGATACAAAAACTGTAACAAAAATTCG 57.242 29.630 0.00 0.00 43.75 3.34
143 144 9.804758 TCCGATACAAAAACTGTAACAAAAATT 57.195 25.926 0.00 0.00 43.75 1.82
144 145 9.240159 GTCCGATACAAAAACTGTAACAAAAAT 57.760 29.630 0.00 0.00 43.75 1.82
145 146 7.701501 GGTCCGATACAAAAACTGTAACAAAAA 59.298 33.333 0.00 0.00 43.75 1.94
146 147 7.194962 GGTCCGATACAAAAACTGTAACAAAA 58.805 34.615 0.00 0.00 43.75 2.44
147 148 6.511444 CGGTCCGATACAAAAACTGTAACAAA 60.511 38.462 4.91 0.00 43.75 2.83
148 149 5.050227 CGGTCCGATACAAAAACTGTAACAA 60.050 40.000 4.91 0.00 43.75 2.83
149 150 4.448395 CGGTCCGATACAAAAACTGTAACA 59.552 41.667 4.91 0.00 43.75 2.41
150 151 4.143052 CCGGTCCGATACAAAAACTGTAAC 60.143 45.833 14.39 0.00 43.75 2.50
151 152 3.995705 CCGGTCCGATACAAAAACTGTAA 59.004 43.478 14.39 0.00 43.75 2.41
152 153 3.587923 CCGGTCCGATACAAAAACTGTA 58.412 45.455 14.39 0.00 44.65 2.74
153 154 2.419667 CCGGTCCGATACAAAAACTGT 58.580 47.619 14.39 0.00 42.47 3.55
154 155 1.129811 GCCGGTCCGATACAAAAACTG 59.870 52.381 14.39 0.00 0.00 3.16
155 156 1.270947 TGCCGGTCCGATACAAAAACT 60.271 47.619 14.39 0.00 0.00 2.66
156 157 1.129811 CTGCCGGTCCGATACAAAAAC 59.870 52.381 14.39 0.00 0.00 2.43
157 158 1.002201 TCTGCCGGTCCGATACAAAAA 59.998 47.619 14.39 0.00 0.00 1.94
158 159 0.609151 TCTGCCGGTCCGATACAAAA 59.391 50.000 14.39 0.00 0.00 2.44
159 160 0.108520 GTCTGCCGGTCCGATACAAA 60.109 55.000 14.39 0.00 0.00 2.83
160 161 0.968901 AGTCTGCCGGTCCGATACAA 60.969 55.000 14.39 0.00 0.00 2.41
161 162 0.107066 TAGTCTGCCGGTCCGATACA 60.107 55.000 14.39 7.14 0.00 2.29
162 163 1.027357 TTAGTCTGCCGGTCCGATAC 58.973 55.000 14.39 5.04 0.00 2.24
163 164 1.766494 TTTAGTCTGCCGGTCCGATA 58.234 50.000 14.39 0.00 0.00 2.92
164 165 1.120530 ATTTAGTCTGCCGGTCCGAT 58.879 50.000 14.39 0.00 0.00 4.18
165 166 0.899720 AATTTAGTCTGCCGGTCCGA 59.100 50.000 14.39 0.00 0.00 4.55
166 167 1.734163 AAATTTAGTCTGCCGGTCCG 58.266 50.000 3.60 3.60 0.00 4.79
167 168 2.817844 ACAAAATTTAGTCTGCCGGTCC 59.182 45.455 1.90 0.00 0.00 4.46
168 169 4.142752 GGTACAAAATTTAGTCTGCCGGTC 60.143 45.833 1.90 0.00 0.00 4.79
169 170 3.754850 GGTACAAAATTTAGTCTGCCGGT 59.245 43.478 1.90 0.00 0.00 5.28
170 171 3.754323 TGGTACAAAATTTAGTCTGCCGG 59.246 43.478 0.00 0.00 31.92 6.13
171 172 4.379082 GGTGGTACAAAATTTAGTCTGCCG 60.379 45.833 0.00 0.00 44.16 5.69
172 173 4.765339 AGGTGGTACAAAATTTAGTCTGCC 59.235 41.667 0.00 0.00 44.16 4.85
173 174 5.390567 CGAGGTGGTACAAAATTTAGTCTGC 60.391 44.000 0.00 0.00 44.16 4.26
174 175 5.929992 TCGAGGTGGTACAAAATTTAGTCTG 59.070 40.000 0.00 0.00 44.16 3.51
175 176 6.105397 TCGAGGTGGTACAAAATTTAGTCT 57.895 37.500 0.00 0.00 44.16 3.24
176 177 5.930569 ACTCGAGGTGGTACAAAATTTAGTC 59.069 40.000 18.41 0.00 44.16 2.59
177 178 5.861727 ACTCGAGGTGGTACAAAATTTAGT 58.138 37.500 18.41 0.00 44.16 2.24
178 179 6.035758 GCTACTCGAGGTGGTACAAAATTTAG 59.964 42.308 18.41 5.09 44.16 1.85
179 180 5.870978 GCTACTCGAGGTGGTACAAAATTTA 59.129 40.000 18.41 0.00 44.16 1.40
180 181 4.694037 GCTACTCGAGGTGGTACAAAATTT 59.306 41.667 18.41 0.00 44.16 1.82
181 182 4.251268 GCTACTCGAGGTGGTACAAAATT 58.749 43.478 18.41 0.00 44.16 1.82
182 183 3.369157 GGCTACTCGAGGTGGTACAAAAT 60.369 47.826 18.41 0.00 44.16 1.82
183 184 2.028748 GGCTACTCGAGGTGGTACAAAA 60.029 50.000 18.41 0.00 44.16 2.44
184 185 1.547372 GGCTACTCGAGGTGGTACAAA 59.453 52.381 18.41 0.00 44.16 2.83
185 186 1.180029 GGCTACTCGAGGTGGTACAA 58.820 55.000 18.41 0.00 44.16 2.41
186 187 0.038599 TGGCTACTCGAGGTGGTACA 59.961 55.000 18.41 5.10 0.00 2.90
187 188 0.455005 GTGGCTACTCGAGGTGGTAC 59.545 60.000 18.41 6.51 0.00 3.34
188 189 0.038599 TGTGGCTACTCGAGGTGGTA 59.961 55.000 18.41 0.00 0.00 3.25
189 190 0.830444 TTGTGGCTACTCGAGGTGGT 60.830 55.000 18.41 0.00 0.00 4.16
190 191 0.537188 ATTGTGGCTACTCGAGGTGG 59.463 55.000 18.41 7.26 0.00 4.61
191 192 2.386661 AATTGTGGCTACTCGAGGTG 57.613 50.000 18.41 9.90 0.00 4.00
192 193 4.546829 TTAAATTGTGGCTACTCGAGGT 57.453 40.909 18.41 5.07 0.00 3.85
193 194 5.873179 TTTTAAATTGTGGCTACTCGAGG 57.127 39.130 18.41 0.17 0.00 4.63
194 195 8.826710 TCATATTTTAAATTGTGGCTACTCGAG 58.173 33.333 11.84 11.84 0.00 4.04
195 196 8.725405 TCATATTTTAAATTGTGGCTACTCGA 57.275 30.769 0.64 0.00 0.00 4.04
196 197 9.781834 TTTCATATTTTAAATTGTGGCTACTCG 57.218 29.630 0.64 0.00 0.00 4.18
198 199 9.567848 CGTTTCATATTTTAAATTGTGGCTACT 57.432 29.630 0.64 0.00 0.00 2.57
199 200 9.562583 TCGTTTCATATTTTAAATTGTGGCTAC 57.437 29.630 0.00 0.00 0.00 3.58
200 201 9.562583 GTCGTTTCATATTTTAAATTGTGGCTA 57.437 29.630 0.00 0.00 0.00 3.93
201 202 8.085296 TGTCGTTTCATATTTTAAATTGTGGCT 58.915 29.630 0.00 0.00 0.00 4.75
202 203 8.233692 TGTCGTTTCATATTTTAAATTGTGGC 57.766 30.769 0.00 0.00 0.00 5.01
208 209 9.301153 GCTTGGATGTCGTTTCATATTTTAAAT 57.699 29.630 0.00 0.00 0.00 1.40
209 210 7.483375 CGCTTGGATGTCGTTTCATATTTTAAA 59.517 33.333 0.00 0.00 0.00 1.52
210 211 6.964370 CGCTTGGATGTCGTTTCATATTTTAA 59.036 34.615 0.00 0.00 0.00 1.52
211 212 6.457663 CCGCTTGGATGTCGTTTCATATTTTA 60.458 38.462 0.00 0.00 33.02 1.52
212 213 5.331902 CGCTTGGATGTCGTTTCATATTTT 58.668 37.500 0.00 0.00 0.00 1.82
213 214 4.201910 CCGCTTGGATGTCGTTTCATATTT 60.202 41.667 0.00 0.00 33.02 1.40
214 215 3.312421 CCGCTTGGATGTCGTTTCATATT 59.688 43.478 0.00 0.00 33.02 1.28
215 216 2.872245 CCGCTTGGATGTCGTTTCATAT 59.128 45.455 0.00 0.00 33.02 1.78
216 217 2.276201 CCGCTTGGATGTCGTTTCATA 58.724 47.619 0.00 0.00 33.02 2.15
217 218 1.086696 CCGCTTGGATGTCGTTTCAT 58.913 50.000 0.00 0.00 33.02 2.57
218 219 0.953471 CCCGCTTGGATGTCGTTTCA 60.953 55.000 0.00 0.00 35.39 2.69
219 220 0.672401 TCCCGCTTGGATGTCGTTTC 60.672 55.000 0.00 0.00 38.61 2.78
220 221 1.373435 TCCCGCTTGGATGTCGTTT 59.627 52.632 0.00 0.00 38.61 3.60
221 222 3.065306 TCCCGCTTGGATGTCGTT 58.935 55.556 0.00 0.00 38.61 3.85
228 229 2.031465 GGTTTCGTCCCGCTTGGA 59.969 61.111 0.00 0.00 42.41 3.53
229 230 1.852067 CTTGGTTTCGTCCCGCTTGG 61.852 60.000 0.00 0.00 0.00 3.61
230 231 0.882927 TCTTGGTTTCGTCCCGCTTG 60.883 55.000 0.00 0.00 0.00 4.01
231 232 0.179040 TTCTTGGTTTCGTCCCGCTT 60.179 50.000 0.00 0.00 0.00 4.68
232 233 0.036306 ATTCTTGGTTTCGTCCCGCT 59.964 50.000 0.00 0.00 0.00 5.52
233 234 1.729284 TATTCTTGGTTTCGTCCCGC 58.271 50.000 0.00 0.00 0.00 6.13
234 235 3.308866 GTGATATTCTTGGTTTCGTCCCG 59.691 47.826 0.00 0.00 0.00 5.14
235 236 3.626217 GGTGATATTCTTGGTTTCGTCCC 59.374 47.826 0.00 0.00 0.00 4.46
236 237 4.514401 AGGTGATATTCTTGGTTTCGTCC 58.486 43.478 0.00 0.00 0.00 4.79
237 238 5.673818 GCAAGGTGATATTCTTGGTTTCGTC 60.674 44.000 12.91 0.00 40.31 4.20
238 239 4.156008 GCAAGGTGATATTCTTGGTTTCGT 59.844 41.667 12.91 0.00 40.31 3.85
239 240 4.396166 AGCAAGGTGATATTCTTGGTTTCG 59.604 41.667 10.99 0.00 45.69 3.46
240 241 5.904362 AGCAAGGTGATATTCTTGGTTTC 57.096 39.130 10.99 0.64 45.69 2.78
244 245 9.125026 ACTATTAAAGCAAGGTGATATTCTTGG 57.875 33.333 12.91 1.85 40.31 3.61
295 296 9.349713 GGAATCAGGATCGAACTATCTATATCT 57.650 37.037 0.00 0.00 0.00 1.98
296 297 9.126151 TGGAATCAGGATCGAACTATCTATATC 57.874 37.037 0.00 0.00 0.00 1.63
297 298 8.908903 GTGGAATCAGGATCGAACTATCTATAT 58.091 37.037 0.00 0.00 0.00 0.86
298 299 7.339721 GGTGGAATCAGGATCGAACTATCTATA 59.660 40.741 0.00 0.00 0.00 1.31
299 300 6.153680 GGTGGAATCAGGATCGAACTATCTAT 59.846 42.308 0.00 0.00 0.00 1.98
300 301 5.477291 GGTGGAATCAGGATCGAACTATCTA 59.523 44.000 0.00 0.00 0.00 1.98
301 302 4.282195 GGTGGAATCAGGATCGAACTATCT 59.718 45.833 0.00 0.00 0.00 1.98
302 303 4.561105 GGTGGAATCAGGATCGAACTATC 58.439 47.826 0.00 0.00 0.00 2.08
303 304 3.325135 GGGTGGAATCAGGATCGAACTAT 59.675 47.826 0.00 0.00 0.00 2.12
304 305 2.698797 GGGTGGAATCAGGATCGAACTA 59.301 50.000 0.00 0.00 0.00 2.24
305 306 1.486726 GGGTGGAATCAGGATCGAACT 59.513 52.381 0.00 0.00 0.00 3.01
306 307 1.209504 TGGGTGGAATCAGGATCGAAC 59.790 52.381 0.00 0.00 0.00 3.95
307 308 1.578897 TGGGTGGAATCAGGATCGAA 58.421 50.000 0.00 0.00 0.00 3.71
308 309 1.209504 GTTGGGTGGAATCAGGATCGA 59.790 52.381 0.00 0.00 0.00 3.59
309 310 1.668419 GTTGGGTGGAATCAGGATCG 58.332 55.000 0.00 0.00 0.00 3.69
310 311 1.566231 AGGTTGGGTGGAATCAGGATC 59.434 52.381 0.00 0.00 0.00 3.36
311 312 1.686236 AGGTTGGGTGGAATCAGGAT 58.314 50.000 0.00 0.00 0.00 3.24
312 313 1.354368 GAAGGTTGGGTGGAATCAGGA 59.646 52.381 0.00 0.00 0.00 3.86
313 314 1.355720 AGAAGGTTGGGTGGAATCAGG 59.644 52.381 0.00 0.00 0.00 3.86
314 315 2.307098 AGAGAAGGTTGGGTGGAATCAG 59.693 50.000 0.00 0.00 0.00 2.90
315 316 2.305927 GAGAGAAGGTTGGGTGGAATCA 59.694 50.000 0.00 0.00 0.00 2.57
316 317 2.678190 CGAGAGAAGGTTGGGTGGAATC 60.678 54.545 0.00 0.00 0.00 2.52
317 318 1.279271 CGAGAGAAGGTTGGGTGGAAT 59.721 52.381 0.00 0.00 0.00 3.01
318 319 0.685097 CGAGAGAAGGTTGGGTGGAA 59.315 55.000 0.00 0.00 0.00 3.53
319 320 0.471211 ACGAGAGAAGGTTGGGTGGA 60.471 55.000 0.00 0.00 0.00 4.02
320 321 0.037232 GACGAGAGAAGGTTGGGTGG 60.037 60.000 0.00 0.00 0.00 4.61
598 602 0.324552 TCCCCATGCCCAATCAACAG 60.325 55.000 0.00 0.00 0.00 3.16
661 665 3.282157 CCGCATCGAGGCAATGGG 61.282 66.667 23.09 11.10 36.96 4.00
662 666 2.514592 ACCGCATCGAGGCAATGG 60.515 61.111 23.09 17.15 0.00 3.16
699 703 1.971167 CCACCACCACCAATCACGG 60.971 63.158 0.00 0.00 0.00 4.94
800 810 8.286996 TCTCGAAATAAAGATTCATCTTAGCG 57.713 34.615 2.41 3.67 45.83 4.26
821 831 2.911143 CACCCCTTCCCCATCTCG 59.089 66.667 0.00 0.00 0.00 4.04
977 987 1.581934 CAACTCTTCCGACAACTGCA 58.418 50.000 0.00 0.00 0.00 4.41
979 989 1.070134 TCCCAACTCTTCCGACAACTG 59.930 52.381 0.00 0.00 0.00 3.16
985 996 1.555075 CTCCATTCCCAACTCTTCCGA 59.445 52.381 0.00 0.00 0.00 4.55
1114 1125 1.005748 CCTGCTCTGCGTCAACAGA 60.006 57.895 0.00 0.00 44.32 3.41
1132 1143 2.315011 CACTGAAGAGCGCTCGATATC 58.685 52.381 30.39 24.81 34.09 1.63
1135 1146 1.518133 GCACTGAAGAGCGCTCGAT 60.518 57.895 30.39 23.46 34.09 3.59
1146 1157 1.228521 CACCACCATGGGCACTGAA 60.229 57.895 18.09 0.00 43.37 3.02
1147 1158 2.435663 CACCACCATGGGCACTGA 59.564 61.111 18.09 0.00 43.37 3.41
1149 1160 4.684134 GGCACCACCATGGGCACT 62.684 66.667 18.09 0.00 43.37 4.40
1180 1191 2.743752 CGACATGCTGGTCCGCTTG 61.744 63.158 15.23 15.23 39.94 4.01
1182 1193 3.362399 CTCGACATGCTGGTCCGCT 62.362 63.158 0.00 0.00 34.24 5.52
1205 1216 4.624364 CCACCACAGGCGCTGTCA 62.624 66.667 7.64 0.00 43.43 3.58
1206 1217 3.234630 TACCACCACAGGCGCTGTC 62.235 63.158 7.64 0.00 43.43 3.51
1215 1226 1.460497 TGCCTCTGGTACCACCACA 60.460 57.895 11.60 4.23 44.79 4.17
1216 1227 1.296715 CTGCCTCTGGTACCACCAC 59.703 63.158 11.60 1.34 44.79 4.16
1224 1235 1.072159 GTTGACAGCTGCCTCTGGT 59.928 57.895 15.27 0.00 38.36 4.00
1291 1302 1.239296 TGGTCTGCATTGACAGCTGC 61.239 55.000 15.27 7.45 38.61 5.25
1302 1313 1.595109 CTCAACACGCTGGTCTGCA 60.595 57.895 0.00 0.00 0.00 4.41
1305 1316 2.743718 CCCTCAACACGCTGGTCT 59.256 61.111 0.00 0.00 0.00 3.85
1363 1374 4.683334 GCCAACACGCGGTTCTGC 62.683 66.667 12.47 12.40 37.72 4.26
1392 1403 2.291735 TGCTTCAATCATCACCATGGGT 60.292 45.455 18.09 0.00 35.62 4.51
1406 1417 4.476628 TCTGCATCTACATCTGCTTCAA 57.523 40.909 0.00 0.00 39.16 2.69
1498 1509 2.671070 CTGGGTGGTCGCATCCTT 59.329 61.111 0.00 0.00 36.01 3.36
1507 1518 2.529744 GCTTCCTGTCCTGGGTGGT 61.530 63.158 0.00 0.00 37.07 4.16
1509 1520 1.302832 GTGCTTCCTGTCCTGGGTG 60.303 63.158 0.00 0.00 0.00 4.61
1541 1552 0.595588 CACAGCGGCCACACAAATTA 59.404 50.000 2.24 0.00 0.00 1.40
1547 1558 3.660111 GAACCACAGCGGCCACAC 61.660 66.667 2.24 0.00 39.03 3.82
1604 1615 9.383519 CTACCTAACAATCATTGAAAGCTTCTA 57.616 33.333 3.79 0.00 0.00 2.10
1635 1646 1.000607 CCCATGCATGCACAGATAAGC 60.001 52.381 25.37 0.00 0.00 3.09
1641 1652 1.133598 CAAGTACCCATGCATGCACAG 59.866 52.381 25.37 18.44 0.00 3.66
1670 1681 7.319646 GGCATCTTTATCCTCTGTACTCTATG 58.680 42.308 0.00 0.00 0.00 2.23
1671 1682 6.439058 GGGCATCTTTATCCTCTGTACTCTAT 59.561 42.308 0.00 0.00 0.00 1.98
1719 1730 4.684214 GCATCACACATCCCTCAGTGATAA 60.684 45.833 6.59 0.00 46.65 1.75
1740 1751 1.314534 AATGCAGCAATAGCCACGCA 61.315 50.000 0.00 0.00 42.61 5.24
1765 1776 4.154918 GGCCTCACTTCAAACTCATACAAG 59.845 45.833 0.00 0.00 0.00 3.16
1767 1778 3.072330 TGGCCTCACTTCAAACTCATACA 59.928 43.478 3.32 0.00 0.00 2.29
1775 1786 2.334977 TCTACCTGGCCTCACTTCAAA 58.665 47.619 3.32 0.00 0.00 2.69
1782 1793 0.543277 CAAGCATCTACCTGGCCTCA 59.457 55.000 3.32 0.00 0.00 3.86
1876 1887 4.985409 TGTTTAATGGACGGAAAAATGTGC 59.015 37.500 0.00 0.00 0.00 4.57
1885 1896 4.214545 GTGATTGTGTGTTTAATGGACGGA 59.785 41.667 0.00 0.00 0.00 4.69
1901 1912 5.824624 TCTGCAAGAGAAAAGAAGTGATTGT 59.175 36.000 0.00 0.00 38.67 2.71
1957 1968 5.397360 AGTGAGAATGACCCCAAAGAAAAT 58.603 37.500 0.00 0.00 0.00 1.82
2076 2087 2.289569 TGGCATGGGAAATGAAAGCAAC 60.290 45.455 0.00 0.00 0.00 4.17
2078 2089 1.642112 TGGCATGGGAAATGAAAGCA 58.358 45.000 0.00 0.00 0.00 3.91
2082 2093 7.011994 AGTATTGATATGGCATGGGAAATGAA 58.988 34.615 10.98 0.00 0.00 2.57
2139 2150 2.991250 ACTCAGCAACAAGTTGACAGT 58.009 42.857 16.54 10.57 42.93 3.55
2146 2157 2.418368 TCACCAACTCAGCAACAAGT 57.582 45.000 0.00 0.00 0.00 3.16
2195 2206 8.358895 TGTTTGTTGAAATCAGAAGCAATATGA 58.641 29.630 0.00 0.00 32.95 2.15
2261 2272 4.998033 GGTTCCTCGAAGAAAAGAAGATGT 59.002 41.667 0.00 0.00 34.09 3.06
2287 2298 5.988561 GTGAGGTGAGAGAAAATGCCTATAG 59.011 44.000 0.00 0.00 0.00 1.31
2367 2385 6.894682 TGTATGGGTGAGTGCTCATATTTTA 58.105 36.000 5.11 0.00 42.18 1.52
2515 2535 5.813080 AATAAACTTAACCCGATGCAGAC 57.187 39.130 0.00 0.00 0.00 3.51
2558 2578 2.660189 AGCATGAATTTTGAAGGCCG 57.340 45.000 0.00 0.00 0.00 6.13
2786 2811 4.808414 TCCTCAGGAGTAACATTGACAG 57.192 45.455 0.00 0.00 0.00 3.51
2874 2899 3.724966 TCAGGGATTGGAATCTAGGGA 57.275 47.619 0.00 0.00 35.73 4.20
2919 2944 4.245660 TGCGACATTCAAGAACCTCTAAG 58.754 43.478 0.00 0.00 0.00 2.18
2970 2995 6.259550 ACTGAATTACAAATTGCAGACCTC 57.740 37.500 13.71 0.00 0.00 3.85
3003 3028 9.480053 ACATTTTATCCAAAGAGAAAACACATG 57.520 29.630 0.00 0.00 43.79 3.21
3146 3173 4.324874 CCCCTGACCATCTCTCTTGAAAAT 60.325 45.833 0.00 0.00 0.00 1.82
3158 3185 0.033208 TCCAAATGCCCCTGACCATC 60.033 55.000 0.00 0.00 0.00 3.51
3443 3470 0.745845 CTGCCCGTCCTCTTGGATTG 60.746 60.000 0.00 0.00 45.29 2.67
3444 3471 1.604378 CTGCCCGTCCTCTTGGATT 59.396 57.895 0.00 0.00 45.29 3.01
3449 3476 2.032681 GTTGCTGCCCGTCCTCTT 59.967 61.111 0.00 0.00 0.00 2.85
3477 3504 3.181491 GCTCTGAGTGCGTCTCTCTAAAT 60.181 47.826 6.53 0.00 43.13 1.40
3533 3560 7.509546 TGGTAGAAACTGAGAAAACTGAAGAT 58.490 34.615 0.00 0.00 0.00 2.40
3587 3615 4.749245 AACTTTAACATCGGAACAGCAG 57.251 40.909 0.00 0.00 0.00 4.24
3778 3806 5.415701 GCCTGGACTGAAATGACATAAAAGA 59.584 40.000 0.00 0.00 0.00 2.52
3792 3820 3.519107 TCTCATATTTGTGCCTGGACTGA 59.481 43.478 0.00 0.00 0.00 3.41
3806 3834 9.579932 GGGTCAAATAAGGAATTCTCTCATATT 57.420 33.333 5.23 1.43 0.00 1.28
3807 3835 8.953665 AGGGTCAAATAAGGAATTCTCTCATAT 58.046 33.333 5.23 0.00 0.00 1.78
4400 5748 1.748879 ACGCGTTGCATGCCCTAAT 60.749 52.632 16.68 0.00 0.00 1.73
4401 5749 2.359354 ACGCGTTGCATGCCCTAA 60.359 55.556 16.68 0.00 0.00 2.69
4474 5907 2.754552 ACACAAGCACACATCACAAACT 59.245 40.909 0.00 0.00 0.00 2.66
4814 8481 4.516698 AGTCAAAAGCAGTGGTAATGTGAG 59.483 41.667 0.00 0.00 0.00 3.51
5182 8857 3.501349 TGCTGCCCTTATTTTAACCACA 58.499 40.909 0.00 0.00 0.00 4.17
5184 8859 6.191315 TCTAATGCTGCCCTTATTTTAACCA 58.809 36.000 0.00 0.00 0.00 3.67
5235 8910 7.661437 ACATACAATTGAACTCTAGCAAAGTGA 59.339 33.333 13.59 0.00 0.00 3.41
5286 9076 2.549754 CACATCACACTGAGACCAAACC 59.450 50.000 0.00 0.00 0.00 3.27
5337 9127 4.891992 TTAGCCAAAGAACAGCTAGAGT 57.108 40.909 0.00 0.00 40.05 3.24
5342 9132 7.651027 AAATATGATTAGCCAAAGAACAGCT 57.349 32.000 0.00 0.00 40.66 4.24
5345 9135 9.474313 AACCTAAATATGATTAGCCAAAGAACA 57.526 29.630 0.00 0.00 32.62 3.18
5424 9214 7.440523 AACAATAAAACAAACAACAAAGCCA 57.559 28.000 0.00 0.00 0.00 4.75
5546 9340 6.252995 TCTAAGGCTCCATTATGGTTGTTTT 58.747 36.000 11.39 4.07 39.03 2.43
5588 9382 6.888632 ACAAATCTGCAAGGTCTTCTATGAAT 59.111 34.615 0.00 0.00 0.00 2.57
5605 9399 4.916983 TGAGGTTGAACCAACAAATCTG 57.083 40.909 17.83 0.00 45.11 2.90
5607 9401 8.956426 TCTATATTGAGGTTGAACCAACAAATC 58.044 33.333 22.90 10.48 45.11 2.17
5661 9455 1.422781 AGATATGGCATGGTCCACAGG 59.577 52.381 10.98 0.00 39.25 4.00
5706 9500 1.417517 TCAAACCTCAAGAGAGCTGCA 59.582 47.619 1.02 0.00 40.68 4.41
5770 9564 8.877864 TTAGAAGCAGATTCAAAGGGAAAATA 57.122 30.769 0.31 0.00 40.67 1.40
5787 9581 8.198109 AGATCGCTAATAGAAACTTTAGAAGCA 58.802 33.333 0.00 0.00 0.00 3.91
5808 9602 3.946308 TCTGCGAGTAACTACAGATCG 57.054 47.619 0.00 0.00 34.35 3.69
5813 9607 5.909621 ATAACCTTCTGCGAGTAACTACA 57.090 39.130 0.00 0.00 0.00 2.74
5814 9608 6.205071 GGTATAACCTTCTGCGAGTAACTAC 58.795 44.000 0.00 0.00 34.73 2.73
5815 9609 6.382869 GGTATAACCTTCTGCGAGTAACTA 57.617 41.667 0.00 0.00 34.73 2.24
5816 9610 5.259832 GGTATAACCTTCTGCGAGTAACT 57.740 43.478 0.00 0.00 34.73 2.24
5872 9678 3.744987 CACGGAACTAGTGTAAGACTCG 58.255 50.000 0.00 0.00 35.96 4.18
5890 9696 4.285807 TCCAACAAAATCTGTCAACACG 57.714 40.909 0.00 0.00 37.23 4.49
5991 9797 9.204570 GTAACAGAGCAAAGAACTAGATACAAA 57.795 33.333 0.00 0.00 0.00 2.83
5993 9799 7.321153 GGTAACAGAGCAAAGAACTAGATACA 58.679 38.462 0.00 0.00 0.00 2.29
6419 10225 1.000955 AGTAACTGAGTTGGCGTCAGG 59.999 52.381 8.33 0.05 44.96 3.86
6425 10231 1.884235 ACTGCAGTAACTGAGTTGGC 58.116 50.000 20.16 9.51 32.44 4.52
6505 10311 1.004440 GTCTTCTGGCCTTCGCTGT 60.004 57.895 3.32 0.00 34.44 4.40
6570 10376 5.157940 ACCACATAGCATAATCAGCTAGG 57.842 43.478 5.45 5.45 46.63 3.02
6606 10412 4.572389 CCTAATCATATTGTCTATGGGCGC 59.428 45.833 0.00 0.00 0.00 6.53
6608 10414 5.440610 CCCCTAATCATATTGTCTATGGGC 58.559 45.833 0.00 0.00 0.00 5.36
6640 10446 6.128391 CGGCTCACTACAACTTTAAAGCATAA 60.128 38.462 15.24 0.00 0.00 1.90
6649 10455 1.338973 TCGACGGCTCACTACAACTTT 59.661 47.619 0.00 0.00 0.00 2.66
6717 10523 6.454795 GCCATTTTGAGTACATTTTTCCTCA 58.545 36.000 0.00 0.00 32.38 3.86
6867 10680 5.179533 TGCACAAGTTCACTACAGTACAAA 58.820 37.500 0.00 0.00 0.00 2.83
6945 10758 0.107654 AGAAGGTCAATACGCAGCCC 60.108 55.000 0.00 0.00 0.00 5.19
6989 10802 3.684305 CACTCATAAACAACCGCAGATGA 59.316 43.478 0.00 0.00 0.00 2.92
6991 10804 2.420022 GCACTCATAAACAACCGCAGAT 59.580 45.455 0.00 0.00 0.00 2.90
7019 10832 2.222508 CGACAGAAAAGCACGAATACGG 60.223 50.000 0.00 0.00 44.46 4.02
7030 10843 3.549299 AAGCTTGCATCGACAGAAAAG 57.451 42.857 0.00 0.00 0.00 2.27
7094 10907 3.307339 TCGTCAGTTTAACACAAACGC 57.693 42.857 0.00 0.00 36.20 4.84
7124 10937 2.621526 GGACGACAACAAAATCCTGGTT 59.378 45.455 0.00 0.00 0.00 3.67
7134 10947 2.224402 TGTCATCATGGGACGACAACAA 60.224 45.455 11.94 0.00 42.67 2.83
7170 10983 4.389374 ACCAATTCAAGATCGACACAAGT 58.611 39.130 0.00 0.00 0.00 3.16
7269 11082 1.069978 TCCAGTGACTGAAACGCATCA 59.930 47.619 15.33 0.00 32.44 3.07
7309 12034 6.811253 TGCAAAAATCGTAGAACACCTTAT 57.189 33.333 0.00 0.00 43.58 1.73
7330 12055 4.187694 TGGAACAAGTGGTTTTCATTTGC 58.812 39.130 0.00 0.00 44.00 3.68
7368 12093 3.252974 AGAGTTGCCAATAGAACTCCG 57.747 47.619 8.32 0.00 46.26 4.63
7370 12095 7.617041 AATACAAGAGTTGCCAATAGAACTC 57.383 36.000 0.00 0.00 45.70 3.01
7371 12096 8.409358 AAAATACAAGAGTTGCCAATAGAACT 57.591 30.769 0.00 0.00 35.07 3.01
7398 12131 9.522804 ACAAGAGTATTTCGCAAAACAAATAAA 57.477 25.926 0.00 0.00 0.00 1.40
7399 12132 9.522804 AACAAGAGTATTTCGCAAAACAAATAA 57.477 25.926 0.00 0.00 0.00 1.40
7400 12133 9.522804 AAACAAGAGTATTTCGCAAAACAAATA 57.477 25.926 0.00 0.00 0.00 1.40
7401 12134 8.419076 AAACAAGAGTATTTCGCAAAACAAAT 57.581 26.923 0.00 0.00 0.00 2.32
7405 12138 7.679659 AGAAAACAAGAGTATTTCGCAAAAC 57.320 32.000 0.00 0.00 37.95 2.43
7460 12193 9.740710 AAGGTGCTAGGATAAATATCATTTACC 57.259 33.333 3.07 5.33 34.40 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.