Multiple sequence alignment - TraesCS7A01G220300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G220300 chr7A 100.000 2330 0 0 1 2330 188884856 188887185 0.000000e+00 4303
1 TraesCS7A01G220300 chr7A 99.470 755 4 0 1576 2330 619191447 619192201 0.000000e+00 1373
2 TraesCS7A01G220300 chr7A 96.159 755 27 2 1577 2330 173130576 173131329 0.000000e+00 1232
3 TraesCS7A01G220300 chr7A 91.129 124 7 4 450 570 381253907 381254029 5.150000e-37 165
4 TraesCS7A01G220300 chr2A 99.470 755 4 0 1576 2330 689766944 689767698 0.000000e+00 1373
5 TraesCS7A01G220300 chr4A 99.072 754 6 1 1577 2330 144632348 144631596 0.000000e+00 1352
6 TraesCS7A01G220300 chr4A 98.029 761 14 1 1570 2330 648136723 648135964 0.000000e+00 1321
7 TraesCS7A01G220300 chr4A 95.276 127 6 0 2204 2330 699615243 699615369 3.930000e-48 202
8 TraesCS7A01G220300 chr4A 93.043 115 6 2 462 575 416231504 416231391 1.430000e-37 167
9 TraesCS7A01G220300 chr6B 98.133 750 14 0 1581 2330 144747663 144748412 0.000000e+00 1308
10 TraesCS7A01G220300 chr1D 97.354 756 19 1 1576 2330 379457560 379458315 0.000000e+00 1284
11 TraesCS7A01G220300 chr7B 89.176 1044 52 35 570 1570 151381505 151380480 0.000000e+00 1245
12 TraesCS7A01G220300 chr1B 96.301 757 25 3 1576 2330 259785032 259785787 0.000000e+00 1240
13 TraesCS7A01G220300 chr1B 94.305 755 27 4 1577 2330 31251366 31252105 0.000000e+00 1142
14 TraesCS7A01G220300 chr7D 94.059 707 26 4 636 1330 182824461 182823759 0.000000e+00 1059
15 TraesCS7A01G220300 chr7D 88.614 202 11 8 1371 1570 182823680 182823489 3.870000e-58 235
16 TraesCS7A01G220300 chr6D 86.391 676 52 19 923 1570 245571993 245571330 0.000000e+00 702
17 TraesCS7A01G220300 chr6D 86.996 546 41 17 1042 1570 245499127 245498595 2.580000e-164 588
18 TraesCS7A01G220300 chr1A 84.167 240 22 11 1336 1570 489155058 489154830 3.900000e-53 219
19 TraesCS7A01G220300 chr4B 95.495 111 4 1 462 571 330522364 330522474 2.380000e-40 176
20 TraesCS7A01G220300 chr5A 95.370 108 4 1 464 570 663713647 663713754 1.110000e-38 171
21 TraesCS7A01G220300 chr3D 94.595 111 5 1 462 571 502141309 502141419 1.110000e-38 171
22 TraesCS7A01G220300 chr6A 91.870 123 6 3 464 583 477910879 477910758 3.980000e-38 169
23 TraesCS7A01G220300 chr6A 88.235 136 13 3 446 578 13437154 13437289 2.400000e-35 159
24 TraesCS7A01G220300 chr3A 93.805 113 6 1 459 570 713339727 713339839 3.980000e-38 169
25 TraesCS7A01G220300 chr5D 89.844 128 11 2 459 585 29168316 29168190 1.850000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G220300 chr7A 188884856 188887185 2329 False 4303 4303 100.0000 1 2330 1 chr7A.!!$F2 2329
1 TraesCS7A01G220300 chr7A 619191447 619192201 754 False 1373 1373 99.4700 1576 2330 1 chr7A.!!$F4 754
2 TraesCS7A01G220300 chr7A 173130576 173131329 753 False 1232 1232 96.1590 1577 2330 1 chr7A.!!$F1 753
3 TraesCS7A01G220300 chr2A 689766944 689767698 754 False 1373 1373 99.4700 1576 2330 1 chr2A.!!$F1 754
4 TraesCS7A01G220300 chr4A 144631596 144632348 752 True 1352 1352 99.0720 1577 2330 1 chr4A.!!$R1 753
5 TraesCS7A01G220300 chr4A 648135964 648136723 759 True 1321 1321 98.0290 1570 2330 1 chr4A.!!$R3 760
6 TraesCS7A01G220300 chr6B 144747663 144748412 749 False 1308 1308 98.1330 1581 2330 1 chr6B.!!$F1 749
7 TraesCS7A01G220300 chr1D 379457560 379458315 755 False 1284 1284 97.3540 1576 2330 1 chr1D.!!$F1 754
8 TraesCS7A01G220300 chr7B 151380480 151381505 1025 True 1245 1245 89.1760 570 1570 1 chr7B.!!$R1 1000
9 TraesCS7A01G220300 chr1B 259785032 259785787 755 False 1240 1240 96.3010 1576 2330 1 chr1B.!!$F2 754
10 TraesCS7A01G220300 chr1B 31251366 31252105 739 False 1142 1142 94.3050 1577 2330 1 chr1B.!!$F1 753
11 TraesCS7A01G220300 chr7D 182823489 182824461 972 True 647 1059 91.3365 636 1570 2 chr7D.!!$R1 934
12 TraesCS7A01G220300 chr6D 245571330 245571993 663 True 702 702 86.3910 923 1570 1 chr6D.!!$R2 647
13 TraesCS7A01G220300 chr6D 245498595 245499127 532 True 588 588 86.9960 1042 1570 1 chr6D.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.031857 CAGCCAGAGAGCATACCGAG 59.968 60.0 0.0 0.0 34.23 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1559 0.103937 CCAAAAAGTGGCTCCGCAAA 59.896 50.0 2.02 0.0 41.72 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.800826 AGCTTTCGTCTGGTTGGTT 57.199 47.368 0.00 0.00 0.00 3.67
19 20 2.052782 AGCTTTCGTCTGGTTGGTTT 57.947 45.000 0.00 0.00 0.00 3.27
20 21 1.947456 AGCTTTCGTCTGGTTGGTTTC 59.053 47.619 0.00 0.00 0.00 2.78
21 22 1.001706 GCTTTCGTCTGGTTGGTTTCC 60.002 52.381 0.00 0.00 0.00 3.13
22 23 1.607148 CTTTCGTCTGGTTGGTTTCCC 59.393 52.381 0.00 0.00 0.00 3.97
23 24 0.547075 TTCGTCTGGTTGGTTTCCCA 59.453 50.000 0.00 0.00 39.65 4.37
24 25 0.768622 TCGTCTGGTTGGTTTCCCAT 59.231 50.000 0.00 0.00 41.49 4.00
25 26 0.881118 CGTCTGGTTGGTTTCCCATG 59.119 55.000 0.00 0.00 41.49 3.66
26 27 0.603065 GTCTGGTTGGTTTCCCATGC 59.397 55.000 0.00 0.00 41.49 4.06
27 28 0.541764 TCTGGTTGGTTTCCCATGCC 60.542 55.000 0.00 0.00 41.49 4.40
28 29 1.876497 CTGGTTGGTTTCCCATGCCG 61.876 60.000 0.00 0.00 41.49 5.69
29 30 2.261361 GTTGGTTTCCCATGCCGC 59.739 61.111 0.00 0.00 41.49 6.53
30 31 3.369400 TTGGTTTCCCATGCCGCG 61.369 61.111 0.00 0.00 41.49 6.46
31 32 3.851897 TTGGTTTCCCATGCCGCGA 62.852 57.895 8.23 0.00 41.49 5.87
32 33 3.059386 GGTTTCCCATGCCGCGAA 61.059 61.111 8.23 0.00 0.00 4.70
33 34 2.485122 GTTTCCCATGCCGCGAAG 59.515 61.111 8.23 0.00 0.00 3.79
34 35 2.749839 TTTCCCATGCCGCGAAGG 60.750 61.111 8.23 3.06 44.97 3.46
35 36 3.261039 TTTCCCATGCCGCGAAGGA 62.261 57.895 8.23 2.70 45.00 3.36
36 37 3.680620 TTCCCATGCCGCGAAGGAG 62.681 63.158 8.23 0.00 45.00 3.69
39 40 3.126879 CATGCCGCGAAGGAGCAA 61.127 61.111 8.23 0.00 45.00 3.91
40 41 3.127533 ATGCCGCGAAGGAGCAAC 61.128 61.111 8.23 0.00 45.00 4.17
41 42 3.899981 ATGCCGCGAAGGAGCAACA 62.900 57.895 8.23 0.00 45.00 3.33
42 43 4.090057 GCCGCGAAGGAGCAACAC 62.090 66.667 8.23 0.00 45.00 3.32
43 44 2.664851 CCGCGAAGGAGCAACACA 60.665 61.111 8.23 0.00 45.00 3.72
44 45 2.671177 CCGCGAAGGAGCAACACAG 61.671 63.158 8.23 0.00 45.00 3.66
45 46 1.956170 CGCGAAGGAGCAACACAGT 60.956 57.895 0.00 0.00 36.85 3.55
46 47 1.862806 GCGAAGGAGCAACACAGTC 59.137 57.895 0.00 0.00 37.05 3.51
47 48 0.880278 GCGAAGGAGCAACACAGTCA 60.880 55.000 0.00 0.00 37.05 3.41
48 49 1.143305 CGAAGGAGCAACACAGTCAG 58.857 55.000 0.00 0.00 0.00 3.51
49 50 0.871057 GAAGGAGCAACACAGTCAGC 59.129 55.000 0.00 0.00 0.00 4.26
50 51 0.536006 AAGGAGCAACACAGTCAGCC 60.536 55.000 0.00 0.00 0.00 4.85
51 52 2.320587 GGAGCAACACAGTCAGCCG 61.321 63.158 0.00 0.00 0.00 5.52
52 53 2.281070 AGCAACACAGTCAGCCGG 60.281 61.111 0.00 0.00 0.00 6.13
53 54 4.030452 GCAACACAGTCAGCCGGC 62.030 66.667 21.89 21.89 0.00 6.13
54 55 2.591429 CAACACAGTCAGCCGGCA 60.591 61.111 31.54 5.56 0.00 5.69
55 56 1.968017 CAACACAGTCAGCCGGCAT 60.968 57.895 31.54 11.31 0.00 4.40
56 57 1.968017 AACACAGTCAGCCGGCATG 60.968 57.895 31.54 22.97 0.00 4.06
57 58 2.046988 CACAGTCAGCCGGCATGA 60.047 61.111 31.54 24.89 0.00 3.07
58 59 2.046892 ACAGTCAGCCGGCATGAC 60.047 61.111 33.52 33.52 46.01 3.06
61 62 2.434185 GTCAGCCGGCATGACGAA 60.434 61.111 30.08 1.26 37.88 3.85
62 63 2.125552 TCAGCCGGCATGACGAAG 60.126 61.111 31.54 11.88 35.47 3.79
63 64 3.869272 CAGCCGGCATGACGAAGC 61.869 66.667 31.54 18.94 35.47 3.86
68 69 2.184322 GGCATGACGAAGCCGAGA 59.816 61.111 0.00 0.00 41.70 4.04
69 70 2.167861 GGCATGACGAAGCCGAGAC 61.168 63.158 0.00 0.00 41.70 3.36
70 71 2.167861 GCATGACGAAGCCGAGACC 61.168 63.158 0.00 0.00 39.50 3.85
71 72 1.513158 CATGACGAAGCCGAGACCT 59.487 57.895 0.00 0.00 39.50 3.85
72 73 0.526524 CATGACGAAGCCGAGACCTC 60.527 60.000 0.00 0.00 39.50 3.85
73 74 0.681564 ATGACGAAGCCGAGACCTCT 60.682 55.000 0.00 0.00 39.50 3.69
74 75 0.035725 TGACGAAGCCGAGACCTCTA 60.036 55.000 0.00 0.00 39.50 2.43
75 76 1.093159 GACGAAGCCGAGACCTCTAA 58.907 55.000 0.00 0.00 39.50 2.10
76 77 1.471684 GACGAAGCCGAGACCTCTAAA 59.528 52.381 0.00 0.00 39.50 1.85
77 78 1.891150 ACGAAGCCGAGACCTCTAAAA 59.109 47.619 0.00 0.00 39.50 1.52
78 79 2.496470 ACGAAGCCGAGACCTCTAAAAT 59.504 45.455 0.00 0.00 39.50 1.82
79 80 3.056035 ACGAAGCCGAGACCTCTAAAATT 60.056 43.478 0.00 0.00 39.50 1.82
80 81 4.159135 ACGAAGCCGAGACCTCTAAAATTA 59.841 41.667 0.00 0.00 39.50 1.40
81 82 4.740695 CGAAGCCGAGACCTCTAAAATTAG 59.259 45.833 0.00 0.00 38.22 1.73
82 83 5.450137 CGAAGCCGAGACCTCTAAAATTAGA 60.450 44.000 3.08 3.08 36.29 2.10
83 84 6.487299 AAGCCGAGACCTCTAAAATTAGAT 57.513 37.500 3.49 0.00 38.95 1.98
84 85 6.091718 AGCCGAGACCTCTAAAATTAGATC 57.908 41.667 3.49 0.56 38.95 2.75
85 86 5.836358 AGCCGAGACCTCTAAAATTAGATCT 59.164 40.000 0.00 0.00 38.95 2.75
86 87 7.005296 AGCCGAGACCTCTAAAATTAGATCTA 58.995 38.462 0.00 0.00 38.95 1.98
87 88 7.175990 AGCCGAGACCTCTAAAATTAGATCTAG 59.824 40.741 2.02 5.51 38.95 2.43
88 89 7.175293 GCCGAGACCTCTAAAATTAGATCTAGA 59.825 40.741 2.02 0.00 38.95 2.43
89 90 8.508875 CCGAGACCTCTAAAATTAGATCTAGAC 58.491 40.741 2.02 0.00 38.95 2.59
90 91 8.508875 CGAGACCTCTAAAATTAGATCTAGACC 58.491 40.741 2.02 0.00 38.95 3.85
91 92 8.715190 AGACCTCTAAAATTAGATCTAGACCC 57.285 38.462 2.02 0.00 38.95 4.46
92 93 7.731235 AGACCTCTAAAATTAGATCTAGACCCC 59.269 40.741 2.02 0.00 38.95 4.95
93 94 7.606581 ACCTCTAAAATTAGATCTAGACCCCT 58.393 38.462 2.02 0.00 38.95 4.79
94 95 8.074991 ACCTCTAAAATTAGATCTAGACCCCTT 58.925 37.037 2.02 0.00 38.95 3.95
95 96 8.590204 CCTCTAAAATTAGATCTAGACCCCTTC 58.410 40.741 2.02 0.00 38.95 3.46
96 97 8.493787 TCTAAAATTAGATCTAGACCCCTTCC 57.506 38.462 2.02 0.00 34.99 3.46
97 98 6.517013 AAAATTAGATCTAGACCCCTTCCC 57.483 41.667 2.02 0.00 0.00 3.97
98 99 4.852991 ATTAGATCTAGACCCCTTCCCA 57.147 45.455 2.02 0.00 0.00 4.37
99 100 2.785357 AGATCTAGACCCCTTCCCAG 57.215 55.000 0.00 0.00 0.00 4.45
100 101 1.052617 GATCTAGACCCCTTCCCAGC 58.947 60.000 0.00 0.00 0.00 4.85
101 102 0.343372 ATCTAGACCCCTTCCCAGCA 59.657 55.000 0.00 0.00 0.00 4.41
102 103 0.118346 TCTAGACCCCTTCCCAGCAA 59.882 55.000 0.00 0.00 0.00 3.91
103 104 0.991920 CTAGACCCCTTCCCAGCAAA 59.008 55.000 0.00 0.00 0.00 3.68
104 105 1.354368 CTAGACCCCTTCCCAGCAAAA 59.646 52.381 0.00 0.00 0.00 2.44
105 106 0.178961 AGACCCCTTCCCAGCAAAAC 60.179 55.000 0.00 0.00 0.00 2.43
106 107 0.469144 GACCCCTTCCCAGCAAAACA 60.469 55.000 0.00 0.00 0.00 2.83
107 108 0.469892 ACCCCTTCCCAGCAAAACAG 60.470 55.000 0.00 0.00 0.00 3.16
108 109 0.178964 CCCCTTCCCAGCAAAACAGA 60.179 55.000 0.00 0.00 0.00 3.41
109 110 1.251251 CCCTTCCCAGCAAAACAGAG 58.749 55.000 0.00 0.00 0.00 3.35
110 111 1.202927 CCCTTCCCAGCAAAACAGAGA 60.203 52.381 0.00 0.00 0.00 3.10
111 112 2.586425 CCTTCCCAGCAAAACAGAGAA 58.414 47.619 0.00 0.00 0.00 2.87
112 113 2.555757 CCTTCCCAGCAAAACAGAGAAG 59.444 50.000 0.00 0.00 0.00 2.85
113 114 2.276732 TCCCAGCAAAACAGAGAAGG 57.723 50.000 0.00 0.00 0.00 3.46
114 115 1.494721 TCCCAGCAAAACAGAGAAGGT 59.505 47.619 0.00 0.00 0.00 3.50
115 116 1.610522 CCCAGCAAAACAGAGAAGGTG 59.389 52.381 0.00 0.00 0.00 4.00
116 117 1.000938 CCAGCAAAACAGAGAAGGTGC 60.001 52.381 0.00 0.00 0.00 5.01
117 118 1.000938 CAGCAAAACAGAGAAGGTGCC 60.001 52.381 0.00 0.00 32.38 5.01
118 119 1.032014 GCAAAACAGAGAAGGTGCCA 58.968 50.000 0.00 0.00 0.00 4.92
119 120 1.408702 GCAAAACAGAGAAGGTGCCAA 59.591 47.619 0.00 0.00 0.00 4.52
120 121 2.159114 GCAAAACAGAGAAGGTGCCAAA 60.159 45.455 0.00 0.00 0.00 3.28
121 122 3.709987 CAAAACAGAGAAGGTGCCAAAG 58.290 45.455 0.00 0.00 0.00 2.77
122 123 2.736670 AACAGAGAAGGTGCCAAAGT 57.263 45.000 0.00 0.00 0.00 2.66
123 124 2.262423 ACAGAGAAGGTGCCAAAGTC 57.738 50.000 0.00 0.00 0.00 3.01
124 125 1.490490 ACAGAGAAGGTGCCAAAGTCA 59.510 47.619 0.00 0.00 0.00 3.41
125 126 2.107204 ACAGAGAAGGTGCCAAAGTCAT 59.893 45.455 0.00 0.00 0.00 3.06
126 127 2.746362 CAGAGAAGGTGCCAAAGTCATC 59.254 50.000 0.00 0.00 0.00 2.92
127 128 2.373169 AGAGAAGGTGCCAAAGTCATCA 59.627 45.455 0.00 0.00 0.00 3.07
128 129 3.149196 GAGAAGGTGCCAAAGTCATCAA 58.851 45.455 0.00 0.00 0.00 2.57
129 130 2.887152 AGAAGGTGCCAAAGTCATCAAC 59.113 45.455 0.00 0.00 0.00 3.18
130 131 1.620822 AGGTGCCAAAGTCATCAACC 58.379 50.000 0.00 0.00 0.00 3.77
131 132 0.240945 GGTGCCAAAGTCATCAACCG 59.759 55.000 0.00 0.00 0.00 4.44
132 133 0.951558 GTGCCAAAGTCATCAACCGT 59.048 50.000 0.00 0.00 0.00 4.83
133 134 1.069227 GTGCCAAAGTCATCAACCGTC 60.069 52.381 0.00 0.00 0.00 4.79
134 135 1.234821 GCCAAAGTCATCAACCGTCA 58.765 50.000 0.00 0.00 0.00 4.35
135 136 1.069227 GCCAAAGTCATCAACCGTCAC 60.069 52.381 0.00 0.00 0.00 3.67
136 137 2.217750 CCAAAGTCATCAACCGTCACA 58.782 47.619 0.00 0.00 0.00 3.58
137 138 2.032030 CCAAAGTCATCAACCGTCACAC 60.032 50.000 0.00 0.00 0.00 3.82
138 139 1.878953 AAGTCATCAACCGTCACACC 58.121 50.000 0.00 0.00 0.00 4.16
139 140 1.048601 AGTCATCAACCGTCACACCT 58.951 50.000 0.00 0.00 0.00 4.00
140 141 1.000955 AGTCATCAACCGTCACACCTC 59.999 52.381 0.00 0.00 0.00 3.85
141 142 1.000955 GTCATCAACCGTCACACCTCT 59.999 52.381 0.00 0.00 0.00 3.69
142 143 1.691976 TCATCAACCGTCACACCTCTT 59.308 47.619 0.00 0.00 0.00 2.85
143 144 1.800586 CATCAACCGTCACACCTCTTG 59.199 52.381 0.00 0.00 0.00 3.02
144 145 0.828022 TCAACCGTCACACCTCTTGT 59.172 50.000 0.00 0.00 39.97 3.16
145 146 1.202486 TCAACCGTCACACCTCTTGTC 60.202 52.381 0.00 0.00 35.67 3.18
146 147 0.249322 AACCGTCACACCTCTTGTCG 60.249 55.000 0.00 0.00 35.67 4.35
147 148 1.362717 CCGTCACACCTCTTGTCGT 59.637 57.895 0.00 0.00 35.67 4.34
148 149 0.663568 CCGTCACACCTCTTGTCGTC 60.664 60.000 0.00 0.00 35.67 4.20
149 150 0.663568 CGTCACACCTCTTGTCGTCC 60.664 60.000 0.00 0.00 35.67 4.79
150 151 0.387929 GTCACACCTCTTGTCGTCCA 59.612 55.000 0.00 0.00 35.67 4.02
151 152 0.387929 TCACACCTCTTGTCGTCCAC 59.612 55.000 0.00 0.00 35.67 4.02
152 153 0.104120 CACACCTCTTGTCGTCCACA 59.896 55.000 0.00 0.00 35.67 4.17
153 154 1.048601 ACACCTCTTGTCGTCCACAT 58.951 50.000 0.00 0.00 33.90 3.21
154 155 1.270305 ACACCTCTTGTCGTCCACATG 60.270 52.381 0.00 0.00 33.90 3.21
155 156 1.000843 CACCTCTTGTCGTCCACATGA 59.999 52.381 0.00 0.00 36.94 3.07
156 157 1.902508 ACCTCTTGTCGTCCACATGAT 59.097 47.619 0.00 0.00 38.24 2.45
157 158 2.274437 CCTCTTGTCGTCCACATGATG 58.726 52.381 0.00 0.00 38.24 3.07
158 159 2.094026 CCTCTTGTCGTCCACATGATGA 60.094 50.000 0.00 0.00 38.24 2.92
159 160 3.588955 CTCTTGTCGTCCACATGATGAA 58.411 45.455 0.00 0.00 40.65 2.57
160 161 3.588955 TCTTGTCGTCCACATGATGAAG 58.411 45.455 0.00 0.00 40.65 3.02
161 162 3.258123 TCTTGTCGTCCACATGATGAAGA 59.742 43.478 0.00 0.03 40.65 2.87
162 163 3.676291 TGTCGTCCACATGATGAAGAA 57.324 42.857 0.00 0.00 40.65 2.52
163 164 3.588955 TGTCGTCCACATGATGAAGAAG 58.411 45.455 0.00 0.00 40.65 2.85
164 165 2.349886 GTCGTCCACATGATGAAGAAGC 59.650 50.000 0.00 0.00 40.65 3.86
165 166 2.028203 TCGTCCACATGATGAAGAAGCA 60.028 45.455 0.00 0.00 36.05 3.91
166 167 2.094894 CGTCCACATGATGAAGAAGCAC 59.905 50.000 0.00 0.00 31.07 4.40
167 168 3.076621 GTCCACATGATGAAGAAGCACA 58.923 45.455 0.00 0.00 0.00 4.57
168 169 3.126514 GTCCACATGATGAAGAAGCACAG 59.873 47.826 0.00 0.00 0.00 3.66
169 170 2.159421 CCACATGATGAAGAAGCACAGC 60.159 50.000 0.00 0.00 0.00 4.40
170 171 2.089980 ACATGATGAAGAAGCACAGCC 58.910 47.619 0.00 0.00 0.00 4.85
171 172 2.089201 CATGATGAAGAAGCACAGCCA 58.911 47.619 0.00 0.00 0.00 4.75
172 173 1.527034 TGATGAAGAAGCACAGCCAC 58.473 50.000 0.00 0.00 0.00 5.01
173 174 0.807496 GATGAAGAAGCACAGCCACC 59.193 55.000 0.00 0.00 0.00 4.61
174 175 0.111061 ATGAAGAAGCACAGCCACCA 59.889 50.000 0.00 0.00 0.00 4.17
175 176 0.819259 TGAAGAAGCACAGCCACCAC 60.819 55.000 0.00 0.00 0.00 4.16
176 177 1.518903 GAAGAAGCACAGCCACCACC 61.519 60.000 0.00 0.00 0.00 4.61
177 178 3.357079 GAAGCACAGCCACCACCG 61.357 66.667 0.00 0.00 0.00 4.94
187 188 4.033776 CACCACCGCCACCCTGAT 62.034 66.667 0.00 0.00 0.00 2.90
188 189 2.285069 ACCACCGCCACCCTGATA 60.285 61.111 0.00 0.00 0.00 2.15
189 190 2.189521 CCACCGCCACCCTGATAC 59.810 66.667 0.00 0.00 0.00 2.24
190 191 2.189521 CACCGCCACCCTGATACC 59.810 66.667 0.00 0.00 0.00 2.73
191 192 2.285069 ACCGCCACCCTGATACCA 60.285 61.111 0.00 0.00 0.00 3.25
192 193 2.367202 ACCGCCACCCTGATACCAG 61.367 63.158 0.00 0.00 40.09 4.00
193 194 2.203070 CGCCACCCTGATACCAGC 60.203 66.667 0.00 0.00 39.07 4.85
194 195 2.193248 GCCACCCTGATACCAGCC 59.807 66.667 0.00 0.00 39.07 4.85
195 196 2.679342 GCCACCCTGATACCAGCCA 61.679 63.158 0.00 0.00 39.07 4.75
196 197 1.528824 CCACCCTGATACCAGCCAG 59.471 63.158 0.00 0.00 39.07 4.85
197 198 0.982852 CCACCCTGATACCAGCCAGA 60.983 60.000 0.00 0.00 39.07 3.86
198 199 0.467384 CACCCTGATACCAGCCAGAG 59.533 60.000 0.00 0.00 39.07 3.35
199 200 0.339859 ACCCTGATACCAGCCAGAGA 59.660 55.000 0.00 0.00 39.07 3.10
200 201 1.047002 CCCTGATACCAGCCAGAGAG 58.953 60.000 0.00 0.00 39.07 3.20
201 202 0.392336 CCTGATACCAGCCAGAGAGC 59.608 60.000 0.00 0.00 39.07 4.09
202 203 1.117994 CTGATACCAGCCAGAGAGCA 58.882 55.000 0.00 0.00 33.07 4.26
203 204 1.693062 CTGATACCAGCCAGAGAGCAT 59.307 52.381 0.00 0.00 33.07 3.79
204 205 2.896044 CTGATACCAGCCAGAGAGCATA 59.104 50.000 0.00 0.00 33.07 3.14
205 206 2.630098 TGATACCAGCCAGAGAGCATAC 59.370 50.000 0.00 0.00 34.23 2.39
206 207 1.414158 TACCAGCCAGAGAGCATACC 58.586 55.000 0.00 0.00 34.23 2.73
207 208 1.068753 CCAGCCAGAGAGCATACCG 59.931 63.158 0.00 0.00 34.23 4.02
208 209 1.395045 CCAGCCAGAGAGCATACCGA 61.395 60.000 0.00 0.00 34.23 4.69
209 210 0.031857 CAGCCAGAGAGCATACCGAG 59.968 60.000 0.00 0.00 34.23 4.63
210 211 0.396417 AGCCAGAGAGCATACCGAGT 60.396 55.000 0.00 0.00 34.23 4.18
211 212 1.133761 AGCCAGAGAGCATACCGAGTA 60.134 52.381 0.00 0.00 34.23 2.59
212 213 1.268352 GCCAGAGAGCATACCGAGTAG 59.732 57.143 0.00 0.00 0.00 2.57
213 214 1.268352 CCAGAGAGCATACCGAGTAGC 59.732 57.143 0.00 0.00 0.00 3.58
214 215 1.268352 CAGAGAGCATACCGAGTAGCC 59.732 57.143 0.00 0.00 0.00 3.93
215 216 0.599060 GAGAGCATACCGAGTAGCCC 59.401 60.000 0.00 0.00 0.00 5.19
216 217 1.173444 AGAGCATACCGAGTAGCCCG 61.173 60.000 0.00 0.00 0.00 6.13
217 218 2.355956 GCATACCGAGTAGCCCGC 60.356 66.667 0.00 0.00 0.00 6.13
218 219 2.338984 CATACCGAGTAGCCCGCC 59.661 66.667 0.00 0.00 0.00 6.13
219 220 2.123597 ATACCGAGTAGCCCGCCA 60.124 61.111 0.00 0.00 0.00 5.69
220 221 2.496291 ATACCGAGTAGCCCGCCAC 61.496 63.158 0.00 0.00 0.00 5.01
224 225 3.712907 GAGTAGCCCGCCACCCAA 61.713 66.667 0.00 0.00 0.00 4.12
225 226 3.682292 GAGTAGCCCGCCACCCAAG 62.682 68.421 0.00 0.00 0.00 3.61
226 227 4.796495 GTAGCCCGCCACCCAAGG 62.796 72.222 0.00 0.00 0.00 3.61
244 245 3.933722 CCCATCGCCCTCGCATCT 61.934 66.667 0.00 0.00 35.26 2.90
245 246 2.356793 CCATCGCCCTCGCATCTC 60.357 66.667 0.00 0.00 35.26 2.75
246 247 2.418777 CATCGCCCTCGCATCTCA 59.581 61.111 0.00 0.00 35.26 3.27
247 248 1.953138 CATCGCCCTCGCATCTCAC 60.953 63.158 0.00 0.00 35.26 3.51
248 249 2.130426 ATCGCCCTCGCATCTCACT 61.130 57.895 0.00 0.00 35.26 3.41
249 250 2.081425 ATCGCCCTCGCATCTCACTC 62.081 60.000 0.00 0.00 35.26 3.51
250 251 2.780094 CGCCCTCGCATCTCACTCT 61.780 63.158 0.00 0.00 34.03 3.24
251 252 1.227205 GCCCTCGCATCTCACTCTG 60.227 63.158 0.00 0.00 34.03 3.35
252 253 1.670949 GCCCTCGCATCTCACTCTGA 61.671 60.000 0.00 0.00 34.03 3.27
253 254 0.820226 CCCTCGCATCTCACTCTGAA 59.180 55.000 0.00 0.00 0.00 3.02
254 255 1.470632 CCCTCGCATCTCACTCTGAAC 60.471 57.143 0.00 0.00 0.00 3.18
255 256 1.470632 CCTCGCATCTCACTCTGAACC 60.471 57.143 0.00 0.00 0.00 3.62
256 257 1.476085 CTCGCATCTCACTCTGAACCT 59.524 52.381 0.00 0.00 0.00 3.50
257 258 1.474478 TCGCATCTCACTCTGAACCTC 59.526 52.381 0.00 0.00 0.00 3.85
258 259 1.476085 CGCATCTCACTCTGAACCTCT 59.524 52.381 0.00 0.00 0.00 3.69
259 260 2.479389 CGCATCTCACTCTGAACCTCTC 60.479 54.545 0.00 0.00 0.00 3.20
260 261 2.495270 GCATCTCACTCTGAACCTCTCA 59.505 50.000 0.00 0.00 0.00 3.27
261 262 3.675775 GCATCTCACTCTGAACCTCTCAC 60.676 52.174 0.00 0.00 0.00 3.51
262 263 3.517296 TCTCACTCTGAACCTCTCACT 57.483 47.619 0.00 0.00 0.00 3.41
263 264 3.153130 TCTCACTCTGAACCTCTCACTG 58.847 50.000 0.00 0.00 0.00 3.66
264 265 3.153130 CTCACTCTGAACCTCTCACTGA 58.847 50.000 0.00 0.00 0.00 3.41
265 266 2.887783 TCACTCTGAACCTCTCACTGAC 59.112 50.000 0.00 0.00 0.00 3.51
266 267 1.883275 ACTCTGAACCTCTCACTGACG 59.117 52.381 0.00 0.00 0.00 4.35
267 268 1.883275 CTCTGAACCTCTCACTGACGT 59.117 52.381 0.00 0.00 0.00 4.34
268 269 1.880675 TCTGAACCTCTCACTGACGTC 59.119 52.381 9.11 9.11 0.00 4.34
269 270 1.609072 CTGAACCTCTCACTGACGTCA 59.391 52.381 18.88 18.88 0.00 4.35
270 271 2.028876 TGAACCTCTCACTGACGTCAA 58.971 47.619 20.49 3.77 0.00 3.18
271 272 2.429250 TGAACCTCTCACTGACGTCAAA 59.571 45.455 20.49 7.21 0.00 2.69
272 273 3.118920 TGAACCTCTCACTGACGTCAAAA 60.119 43.478 20.49 6.85 0.00 2.44
273 274 2.822764 ACCTCTCACTGACGTCAAAAC 58.177 47.619 20.49 0.00 0.00 2.43
274 275 2.167693 ACCTCTCACTGACGTCAAAACA 59.832 45.455 20.49 2.96 0.00 2.83
275 276 2.540101 CCTCTCACTGACGTCAAAACAC 59.460 50.000 20.49 0.00 0.00 3.32
276 277 3.186909 CTCTCACTGACGTCAAAACACA 58.813 45.455 20.49 1.34 0.00 3.72
277 278 2.927477 TCTCACTGACGTCAAAACACAC 59.073 45.455 20.49 0.00 0.00 3.82
278 279 2.670905 CTCACTGACGTCAAAACACACA 59.329 45.455 20.49 0.00 0.00 3.72
279 280 3.067833 TCACTGACGTCAAAACACACAA 58.932 40.909 20.49 0.00 0.00 3.33
280 281 3.498777 TCACTGACGTCAAAACACACAAA 59.501 39.130 20.49 0.00 0.00 2.83
281 282 3.602062 CACTGACGTCAAAACACACAAAC 59.398 43.478 20.49 0.00 0.00 2.93
282 283 2.837878 CTGACGTCAAAACACACAAACG 59.162 45.455 20.49 0.00 36.29 3.60
283 284 1.575803 GACGTCAAAACACACAAACGC 59.424 47.619 11.55 0.00 33.68 4.84
284 285 0.911184 CGTCAAAACACACAAACGCC 59.089 50.000 0.00 0.00 0.00 5.68
285 286 1.729472 CGTCAAAACACACAAACGCCA 60.729 47.619 0.00 0.00 0.00 5.69
286 287 1.651631 GTCAAAACACACAAACGCCAC 59.348 47.619 0.00 0.00 0.00 5.01
287 288 0.995728 CAAAACACACAAACGCCACC 59.004 50.000 0.00 0.00 0.00 4.61
288 289 0.456995 AAAACACACAAACGCCACCG 60.457 50.000 0.00 0.00 41.14 4.94
289 290 1.306642 AAACACACAAACGCCACCGA 61.307 50.000 0.00 0.00 38.29 4.69
290 291 1.984321 AACACACAAACGCCACCGAC 61.984 55.000 0.00 0.00 38.29 4.79
291 292 2.898343 ACACAAACGCCACCGACC 60.898 61.111 0.00 0.00 38.29 4.79
292 293 4.007940 CACAAACGCCACCGACCG 62.008 66.667 0.00 0.00 38.29 4.79
301 302 3.827898 CACCGACCGGCTCCTCTC 61.828 72.222 8.55 0.00 39.32 3.20
305 306 2.683933 GACCGGCTCCTCTCCCAA 60.684 66.667 0.00 0.00 0.00 4.12
306 307 2.041265 ACCGGCTCCTCTCCCAAT 59.959 61.111 0.00 0.00 0.00 3.16
307 308 2.317149 GACCGGCTCCTCTCCCAATG 62.317 65.000 0.00 0.00 0.00 2.82
308 309 2.066393 CCGGCTCCTCTCCCAATGA 61.066 63.158 0.00 0.00 0.00 2.57
309 310 1.626356 CCGGCTCCTCTCCCAATGAA 61.626 60.000 0.00 0.00 0.00 2.57
310 311 0.471617 CGGCTCCTCTCCCAATGAAT 59.528 55.000 0.00 0.00 0.00 2.57
311 312 1.813092 CGGCTCCTCTCCCAATGAATG 60.813 57.143 0.00 0.00 0.00 2.67
312 313 1.492176 GGCTCCTCTCCCAATGAATGA 59.508 52.381 0.00 0.00 0.00 2.57
313 314 2.092212 GGCTCCTCTCCCAATGAATGAA 60.092 50.000 0.00 0.00 0.00 2.57
314 315 3.212685 GCTCCTCTCCCAATGAATGAAG 58.787 50.000 0.00 0.00 0.00 3.02
315 316 3.818180 CTCCTCTCCCAATGAATGAAGG 58.182 50.000 0.00 0.00 0.00 3.46
316 317 3.457380 CTCCTCTCCCAATGAATGAAGGA 59.543 47.826 0.00 0.00 0.00 3.36
317 318 4.050037 TCCTCTCCCAATGAATGAAGGAT 58.950 43.478 0.00 0.00 0.00 3.24
318 319 5.226803 TCCTCTCCCAATGAATGAAGGATA 58.773 41.667 0.00 0.00 0.00 2.59
319 320 5.853922 TCCTCTCCCAATGAATGAAGGATAT 59.146 40.000 0.00 0.00 0.00 1.63
320 321 7.024994 TCCTCTCCCAATGAATGAAGGATATA 58.975 38.462 0.00 0.00 0.00 0.86
321 322 7.181665 TCCTCTCCCAATGAATGAAGGATATAG 59.818 40.741 0.00 0.00 0.00 1.31
322 323 6.715280 TCTCCCAATGAATGAAGGATATAGC 58.285 40.000 0.00 0.00 0.00 2.97
323 324 6.273026 TCTCCCAATGAATGAAGGATATAGCA 59.727 38.462 0.00 0.00 0.00 3.49
324 325 6.851318 TCCCAATGAATGAAGGATATAGCAA 58.149 36.000 0.00 0.00 0.00 3.91
325 326 7.296856 TCCCAATGAATGAAGGATATAGCAAA 58.703 34.615 0.00 0.00 0.00 3.68
326 327 7.951806 TCCCAATGAATGAAGGATATAGCAAAT 59.048 33.333 0.00 0.00 0.00 2.32
327 328 8.248945 CCCAATGAATGAAGGATATAGCAAATC 58.751 37.037 0.00 0.00 0.00 2.17
328 329 9.021807 CCAATGAATGAAGGATATAGCAAATCT 57.978 33.333 0.00 0.00 0.00 2.40
332 333 9.208022 TGAATGAAGGATATAGCAAATCTTACG 57.792 33.333 0.00 0.00 0.00 3.18
333 334 7.602517 ATGAAGGATATAGCAAATCTTACGC 57.397 36.000 0.00 0.00 0.00 4.42
334 335 5.633601 TGAAGGATATAGCAAATCTTACGCG 59.366 40.000 3.53 3.53 0.00 6.01
335 336 5.135508 AGGATATAGCAAATCTTACGCGT 57.864 39.130 19.17 19.17 0.00 6.01
336 337 6.263516 AGGATATAGCAAATCTTACGCGTA 57.736 37.500 16.41 16.41 0.00 4.42
337 338 6.323266 AGGATATAGCAAATCTTACGCGTAG 58.677 40.000 19.61 13.40 0.00 3.51
352 353 1.927895 CGTAGCAAGACTGATGGGTC 58.072 55.000 0.00 0.00 36.56 4.46
354 355 2.688446 CGTAGCAAGACTGATGGGTCTA 59.312 50.000 0.00 0.00 44.67 2.59
355 356 3.130516 CGTAGCAAGACTGATGGGTCTAA 59.869 47.826 0.00 0.00 44.67 2.10
356 357 3.902881 AGCAAGACTGATGGGTCTAAG 57.097 47.619 0.00 0.00 44.67 2.18
357 358 3.445008 AGCAAGACTGATGGGTCTAAGA 58.555 45.455 0.00 0.00 44.67 2.10
358 359 3.450457 AGCAAGACTGATGGGTCTAAGAG 59.550 47.826 0.00 0.00 44.67 2.85
359 360 3.196685 GCAAGACTGATGGGTCTAAGAGT 59.803 47.826 0.00 0.00 44.67 3.24
360 361 4.323104 GCAAGACTGATGGGTCTAAGAGTT 60.323 45.833 0.00 0.00 44.67 3.01
361 362 5.799213 CAAGACTGATGGGTCTAAGAGTTT 58.201 41.667 0.00 0.00 44.67 2.66
362 363 6.574465 GCAAGACTGATGGGTCTAAGAGTTTA 60.574 42.308 0.00 0.00 44.67 2.01
363 364 7.386851 CAAGACTGATGGGTCTAAGAGTTTAA 58.613 38.462 0.00 0.00 44.67 1.52
364 365 7.554959 AGACTGATGGGTCTAAGAGTTTAAA 57.445 36.000 0.00 0.00 43.76 1.52
365 366 7.974504 AGACTGATGGGTCTAAGAGTTTAAAA 58.025 34.615 0.00 0.00 43.76 1.52
366 367 8.437575 AGACTGATGGGTCTAAGAGTTTAAAAA 58.562 33.333 0.00 0.00 43.76 1.94
389 390 7.989416 AAAATAAAACTGATCGGTCTAACCA 57.011 32.000 7.86 0.00 38.47 3.67
390 391 7.989416 AAATAAAACTGATCGGTCTAACCAA 57.011 32.000 7.86 0.00 38.47 3.67
391 392 8.575649 AAATAAAACTGATCGGTCTAACCAAT 57.424 30.769 7.86 0.00 38.47 3.16
392 393 5.880054 AAAACTGATCGGTCTAACCAATG 57.120 39.130 7.86 0.00 38.47 2.82
393 394 3.543680 ACTGATCGGTCTAACCAATGG 57.456 47.619 0.00 0.00 38.47 3.16
394 395 3.104512 ACTGATCGGTCTAACCAATGGA 58.895 45.455 6.16 0.00 38.47 3.41
395 396 3.517901 ACTGATCGGTCTAACCAATGGAA 59.482 43.478 6.16 0.00 38.47 3.53
396 397 4.122776 CTGATCGGTCTAACCAATGGAAG 58.877 47.826 6.16 2.95 38.47 3.46
397 398 3.517901 TGATCGGTCTAACCAATGGAAGT 59.482 43.478 6.16 0.00 38.47 3.01
398 399 4.712829 TGATCGGTCTAACCAATGGAAGTA 59.287 41.667 6.16 0.00 38.47 2.24
399 400 5.188163 TGATCGGTCTAACCAATGGAAGTAA 59.812 40.000 6.16 0.00 38.47 2.24
400 401 5.687166 TCGGTCTAACCAATGGAAGTAAT 57.313 39.130 6.16 0.00 38.47 1.89
401 402 5.424757 TCGGTCTAACCAATGGAAGTAATG 58.575 41.667 6.16 0.00 38.47 1.90
402 403 5.046159 TCGGTCTAACCAATGGAAGTAATGT 60.046 40.000 6.16 0.00 38.47 2.71
403 404 5.293569 CGGTCTAACCAATGGAAGTAATGTC 59.706 44.000 6.16 0.00 38.47 3.06
404 405 5.293569 GGTCTAACCAATGGAAGTAATGTCG 59.706 44.000 6.16 0.00 38.42 4.35
405 406 5.873164 GTCTAACCAATGGAAGTAATGTCGT 59.127 40.000 6.16 0.00 0.00 4.34
406 407 6.035758 GTCTAACCAATGGAAGTAATGTCGTC 59.964 42.308 6.16 0.00 0.00 4.20
407 408 4.553330 ACCAATGGAAGTAATGTCGTCT 57.447 40.909 6.16 0.00 0.00 4.18
408 409 4.253685 ACCAATGGAAGTAATGTCGTCTG 58.746 43.478 6.16 0.00 0.00 3.51
409 410 4.253685 CCAATGGAAGTAATGTCGTCTGT 58.746 43.478 0.00 0.00 0.00 3.41
410 411 4.093408 CCAATGGAAGTAATGTCGTCTGTG 59.907 45.833 0.00 0.00 0.00 3.66
411 412 4.537135 ATGGAAGTAATGTCGTCTGTGT 57.463 40.909 0.00 0.00 0.00 3.72
412 413 4.330944 TGGAAGTAATGTCGTCTGTGTT 57.669 40.909 0.00 0.00 0.00 3.32
413 414 5.456548 TGGAAGTAATGTCGTCTGTGTTA 57.543 39.130 0.00 0.00 0.00 2.41
414 415 5.845103 TGGAAGTAATGTCGTCTGTGTTAA 58.155 37.500 0.00 0.00 0.00 2.01
415 416 6.460781 TGGAAGTAATGTCGTCTGTGTTAAT 58.539 36.000 0.00 0.00 0.00 1.40
416 417 7.604549 TGGAAGTAATGTCGTCTGTGTTAATA 58.395 34.615 0.00 0.00 0.00 0.98
417 418 7.758076 TGGAAGTAATGTCGTCTGTGTTAATAG 59.242 37.037 0.00 0.00 0.00 1.73
418 419 7.254017 GGAAGTAATGTCGTCTGTGTTAATAGC 60.254 40.741 0.00 0.00 0.00 2.97
419 420 6.864342 AGTAATGTCGTCTGTGTTAATAGCT 58.136 36.000 0.00 0.00 0.00 3.32
420 421 7.321153 AGTAATGTCGTCTGTGTTAATAGCTT 58.679 34.615 0.00 0.00 0.00 3.74
421 422 8.464404 AGTAATGTCGTCTGTGTTAATAGCTTA 58.536 33.333 0.00 0.00 0.00 3.09
422 423 7.757097 AATGTCGTCTGTGTTAATAGCTTAG 57.243 36.000 0.00 0.00 0.00 2.18
423 424 6.263516 TGTCGTCTGTGTTAATAGCTTAGT 57.736 37.500 0.00 0.00 0.00 2.24
424 425 7.381766 TGTCGTCTGTGTTAATAGCTTAGTA 57.618 36.000 0.00 0.00 0.00 1.82
425 426 7.470079 TGTCGTCTGTGTTAATAGCTTAGTAG 58.530 38.462 0.00 0.00 0.00 2.57
426 427 7.120285 TGTCGTCTGTGTTAATAGCTTAGTAGT 59.880 37.037 0.00 0.00 0.00 2.73
427 428 8.607459 GTCGTCTGTGTTAATAGCTTAGTAGTA 58.393 37.037 0.00 0.00 0.00 1.82
428 429 8.824781 TCGTCTGTGTTAATAGCTTAGTAGTAG 58.175 37.037 0.00 0.00 0.00 2.57
429 430 8.824781 CGTCTGTGTTAATAGCTTAGTAGTAGA 58.175 37.037 0.00 0.00 0.00 2.59
474 475 7.625828 AATTCAAAAATAACTACTCCCTCCG 57.374 36.000 0.00 0.00 0.00 4.63
475 476 5.750352 TCAAAAATAACTACTCCCTCCGT 57.250 39.130 0.00 0.00 0.00 4.69
476 477 6.117975 TCAAAAATAACTACTCCCTCCGTT 57.882 37.500 0.00 0.00 0.00 4.44
477 478 6.536447 TCAAAAATAACTACTCCCTCCGTTT 58.464 36.000 0.00 0.00 0.00 3.60
478 479 6.652062 TCAAAAATAACTACTCCCTCCGTTTC 59.348 38.462 0.00 0.00 0.00 2.78
479 480 5.750352 AAATAACTACTCCCTCCGTTTCA 57.250 39.130 0.00 0.00 0.00 2.69
480 481 5.750352 AATAACTACTCCCTCCGTTTCAA 57.250 39.130 0.00 0.00 0.00 2.69
481 482 5.750352 ATAACTACTCCCTCCGTTTCAAA 57.250 39.130 0.00 0.00 0.00 2.69
482 483 4.635699 AACTACTCCCTCCGTTTCAAAT 57.364 40.909 0.00 0.00 0.00 2.32
483 484 4.635699 ACTACTCCCTCCGTTTCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
484 485 5.750352 ACTACTCCCTCCGTTTCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
485 486 5.485620 ACTACTCCCTCCGTTTCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
486 487 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
487 488 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
488 489 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
489 490 2.095372 CCCTCCGTTTCAAATTACTCGC 59.905 50.000 0.00 0.00 0.00 5.03
490 491 2.222729 CCTCCGTTTCAAATTACTCGCG 60.223 50.000 0.00 0.00 0.00 5.87
491 492 1.127213 TCCGTTTCAAATTACTCGCGC 59.873 47.619 0.00 0.00 0.00 6.86
492 493 1.136197 CCGTTTCAAATTACTCGCGCA 60.136 47.619 8.75 0.00 0.00 6.09
493 494 2.158143 CGTTTCAAATTACTCGCGCAG 58.842 47.619 8.75 6.77 0.00 5.18
494 495 2.159894 CGTTTCAAATTACTCGCGCAGA 60.160 45.455 8.75 4.86 0.00 4.26
495 496 3.663233 CGTTTCAAATTACTCGCGCAGAA 60.663 43.478 8.75 0.00 0.00 3.02
496 497 4.215965 GTTTCAAATTACTCGCGCAGAAA 58.784 39.130 8.75 0.00 0.00 2.52
497 498 4.678509 TTCAAATTACTCGCGCAGAAAT 57.321 36.364 8.75 0.99 0.00 2.17
498 499 4.002267 TCAAATTACTCGCGCAGAAATG 57.998 40.909 8.75 0.00 0.00 2.32
499 500 3.682377 TCAAATTACTCGCGCAGAAATGA 59.318 39.130 8.75 0.00 0.00 2.57
500 501 4.153296 TCAAATTACTCGCGCAGAAATGAA 59.847 37.500 8.75 0.00 0.00 2.57
501 502 4.882671 AATTACTCGCGCAGAAATGAAT 57.117 36.364 8.75 0.91 0.00 2.57
502 503 3.656651 TTACTCGCGCAGAAATGAATG 57.343 42.857 8.75 0.00 0.00 2.67
503 504 1.442769 ACTCGCGCAGAAATGAATGT 58.557 45.000 8.75 0.00 0.00 2.71
504 505 2.616960 ACTCGCGCAGAAATGAATGTA 58.383 42.857 8.75 0.00 0.00 2.29
505 506 3.198068 ACTCGCGCAGAAATGAATGTAT 58.802 40.909 8.75 0.00 0.00 2.29
506 507 3.246226 ACTCGCGCAGAAATGAATGTATC 59.754 43.478 8.75 0.00 0.00 2.24
507 508 3.457234 TCGCGCAGAAATGAATGTATCT 58.543 40.909 8.75 0.00 0.00 1.98
508 509 4.616953 TCGCGCAGAAATGAATGTATCTA 58.383 39.130 8.75 0.00 0.00 1.98
509 510 4.681483 TCGCGCAGAAATGAATGTATCTAG 59.319 41.667 8.75 0.00 0.00 2.43
510 511 4.681483 CGCGCAGAAATGAATGTATCTAGA 59.319 41.667 8.75 0.00 0.00 2.43
511 512 5.175673 CGCGCAGAAATGAATGTATCTAGAA 59.824 40.000 8.75 0.00 0.00 2.10
512 513 6.588552 GCGCAGAAATGAATGTATCTAGAAG 58.411 40.000 0.30 0.00 0.00 2.85
513 514 6.201806 GCGCAGAAATGAATGTATCTAGAAGT 59.798 38.462 0.30 0.00 0.00 3.01
514 515 7.382488 GCGCAGAAATGAATGTATCTAGAAGTA 59.618 37.037 0.30 0.00 0.00 2.24
515 516 9.249457 CGCAGAAATGAATGTATCTAGAAGTAA 57.751 33.333 0.00 0.00 0.00 2.24
542 543 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
543 544 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
544 545 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
545 546 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
546 547 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
547 548 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
548 549 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
549 550 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
550 551 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
551 552 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
552 553 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
553 554 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
554 555 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
555 556 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
556 557 2.736144 ACCTGCGACAAGTAATTCGA 57.264 45.000 0.00 0.00 37.43 3.71
557 558 3.034721 ACCTGCGACAAGTAATTCGAA 57.965 42.857 0.00 0.00 37.43 3.71
558 559 3.395639 ACCTGCGACAAGTAATTCGAAA 58.604 40.909 0.00 0.00 37.43 3.46
559 560 4.000988 ACCTGCGACAAGTAATTCGAAAT 58.999 39.130 0.00 0.00 37.43 2.17
560 561 4.142902 ACCTGCGACAAGTAATTCGAAATG 60.143 41.667 0.00 0.00 37.43 2.32
561 562 4.092821 CCTGCGACAAGTAATTCGAAATGA 59.907 41.667 0.00 0.00 37.43 2.57
562 563 5.390461 CCTGCGACAAGTAATTCGAAATGAA 60.390 40.000 0.00 0.00 41.81 2.57
563 564 5.617609 TGCGACAAGTAATTCGAAATGAAG 58.382 37.500 0.00 0.00 40.65 3.02
564 565 5.022021 GCGACAAGTAATTCGAAATGAAGG 58.978 41.667 0.00 0.00 40.65 3.46
565 566 5.560148 CGACAAGTAATTCGAAATGAAGGG 58.440 41.667 0.00 0.00 40.65 3.95
566 567 5.350365 CGACAAGTAATTCGAAATGAAGGGA 59.650 40.000 0.00 0.00 40.65 4.20
567 568 6.455646 CGACAAGTAATTCGAAATGAAGGGAG 60.456 42.308 0.00 0.00 40.65 4.30
568 569 6.238648 ACAAGTAATTCGAAATGAAGGGAGT 58.761 36.000 0.00 0.00 40.65 3.85
583 584 7.687941 TGAAGGGAGTATGAACAAAGAAATC 57.312 36.000 0.00 0.00 0.00 2.17
589 590 7.970614 GGGAGTATGAACAAAGAAATCACATTC 59.029 37.037 0.00 0.00 0.00 2.67
607 608 6.724441 TCACATTCTAGGAGTAGGAAGTTGAA 59.276 38.462 0.00 0.00 0.00 2.69
608 609 7.234782 TCACATTCTAGGAGTAGGAAGTTGAAA 59.765 37.037 0.00 0.00 0.00 2.69
654 679 6.094193 TGTAGATCAGATCAGTATTGGCAG 57.906 41.667 13.14 0.00 0.00 4.85
670 695 1.510776 GCAGGCTAGAGTGATGATGC 58.489 55.000 0.00 0.00 0.00 3.91
810 839 1.064685 GTCCCATCCCCAACCTAAGTG 60.065 57.143 0.00 0.00 0.00 3.16
883 913 0.524816 GAAACGCTGGCATGCATGAG 60.525 55.000 30.64 19.67 0.00 2.90
931 961 2.174349 CGCGCTCCAAGTTGAAGC 59.826 61.111 3.61 3.61 0.00 3.86
935 965 0.384725 CGCTCCAAGTTGAAGCGTTG 60.385 55.000 26.18 0.59 43.00 4.10
946 976 1.578206 GAAGCGTTGAACTCCCAGCC 61.578 60.000 0.00 0.00 0.00 4.85
954 984 1.613630 AACTCCCAGCCCACTCGAT 60.614 57.895 0.00 0.00 0.00 3.59
972 1002 2.521958 ATCCCCCAACTCGCAACTCG 62.522 60.000 0.00 0.00 40.15 4.18
986 1016 4.452733 CTCGACCCCGACCAAGCC 62.453 72.222 0.00 0.00 40.30 4.35
989 1019 4.011517 GACCCCGACCAAGCCGAA 62.012 66.667 0.00 0.00 0.00 4.30
991 1021 4.323477 CCCCGACCAAGCCGAACA 62.323 66.667 0.00 0.00 0.00 3.18
992 1022 2.046314 CCCGACCAAGCCGAACAT 60.046 61.111 0.00 0.00 0.00 2.71
993 1023 2.106683 CCCGACCAAGCCGAACATC 61.107 63.158 0.00 0.00 0.00 3.06
1402 1484 0.170561 CTCGGCGTAGTTAGTGCTGT 59.829 55.000 6.85 0.00 36.40 4.40
1406 1488 3.119388 TCGGCGTAGTTAGTGCTGTTTAT 60.119 43.478 6.85 0.00 36.40 1.40
1414 1496 7.117236 CGTAGTTAGTGCTGTTTATTGGAAAGA 59.883 37.037 0.00 0.00 0.00 2.52
1471 1553 2.570284 CGGCCCCACTTTTTGGTCC 61.570 63.158 0.00 0.00 45.25 4.46
1476 1558 2.092646 GCCCCACTTTTTGGTCCTTTTT 60.093 45.455 0.00 0.00 45.25 1.94
1570 1654 9.265901 GTTCAGCTGCTTTTCTCTCAATATATA 57.734 33.333 9.47 0.00 0.00 0.86
1782 1867 3.971453 CTCACGAGACCGCACGCAT 62.971 63.158 0.00 0.00 39.95 4.73
1784 1869 4.357947 ACGAGACCGCACGCATGT 62.358 61.111 0.00 0.00 39.95 3.21
1821 1906 1.828660 CCCCTAGAGGCGTCATCGT 60.829 63.158 9.41 0.00 39.49 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.947456 GAAACCAACCAGACGAAAGCT 59.053 47.619 0.00 0.00 0.00 3.74
1 2 1.001706 GGAAACCAACCAGACGAAAGC 60.002 52.381 0.00 0.00 0.00 3.51
18 19 3.680620 CTCCTTCGCGGCATGGGAA 62.681 63.158 6.13 7.33 46.15 3.97
19 20 4.161295 CTCCTTCGCGGCATGGGA 62.161 66.667 6.13 6.28 37.84 4.37
22 23 3.126879 TTGCTCCTTCGCGGCATG 61.127 61.111 6.13 0.00 35.84 4.06
23 24 3.127533 GTTGCTCCTTCGCGGCAT 61.128 61.111 6.13 0.00 35.84 4.40
24 25 4.617520 TGTTGCTCCTTCGCGGCA 62.618 61.111 6.13 4.18 0.00 5.69
25 26 4.090057 GTGTTGCTCCTTCGCGGC 62.090 66.667 6.13 0.79 0.00 6.53
26 27 2.664851 TGTGTTGCTCCTTCGCGG 60.665 61.111 6.13 0.00 0.00 6.46
27 28 1.891060 GACTGTGTTGCTCCTTCGCG 61.891 60.000 0.00 0.00 0.00 5.87
28 29 0.880278 TGACTGTGTTGCTCCTTCGC 60.880 55.000 0.00 0.00 0.00 4.70
29 30 1.143305 CTGACTGTGTTGCTCCTTCG 58.857 55.000 0.00 0.00 0.00 3.79
30 31 0.871057 GCTGACTGTGTTGCTCCTTC 59.129 55.000 0.00 0.00 0.00 3.46
31 32 0.536006 GGCTGACTGTGTTGCTCCTT 60.536 55.000 0.00 0.00 0.00 3.36
32 33 1.072159 GGCTGACTGTGTTGCTCCT 59.928 57.895 0.00 0.00 0.00 3.69
33 34 2.320587 CGGCTGACTGTGTTGCTCC 61.321 63.158 0.00 0.00 0.00 4.70
34 35 2.320587 CCGGCTGACTGTGTTGCTC 61.321 63.158 0.00 0.00 0.00 4.26
35 36 2.281070 CCGGCTGACTGTGTTGCT 60.281 61.111 0.00 0.00 0.00 3.91
36 37 4.030452 GCCGGCTGACTGTGTTGC 62.030 66.667 22.15 0.00 0.00 4.17
37 38 1.968017 ATGCCGGCTGACTGTGTTG 60.968 57.895 29.70 0.00 0.00 3.33
38 39 1.968017 CATGCCGGCTGACTGTGTT 60.968 57.895 29.70 0.00 0.00 3.32
39 40 2.359107 CATGCCGGCTGACTGTGT 60.359 61.111 29.70 0.07 0.00 3.72
40 41 2.046988 TCATGCCGGCTGACTGTG 60.047 61.111 29.70 15.74 0.00 3.66
41 42 2.046892 GTCATGCCGGCTGACTGT 60.047 61.111 33.35 13.17 39.90 3.55
42 43 3.190849 CGTCATGCCGGCTGACTG 61.191 66.667 35.02 28.44 40.68 3.51
43 44 2.842394 CTTCGTCATGCCGGCTGACT 62.842 60.000 35.02 17.45 40.68 3.41
44 45 2.434185 TTCGTCATGCCGGCTGAC 60.434 61.111 32.08 32.08 39.69 3.51
45 46 2.125552 CTTCGTCATGCCGGCTGA 60.126 61.111 29.70 24.18 0.00 4.26
46 47 3.869272 GCTTCGTCATGCCGGCTG 61.869 66.667 29.70 22.27 0.00 4.85
51 52 2.167861 GTCTCGGCTTCGTCATGCC 61.168 63.158 0.00 0.00 45.25 4.40
52 53 2.167861 GGTCTCGGCTTCGTCATGC 61.168 63.158 0.00 0.00 35.06 4.06
53 54 0.526524 GAGGTCTCGGCTTCGTCATG 60.527 60.000 0.00 0.00 35.06 3.07
54 55 0.681564 AGAGGTCTCGGCTTCGTCAT 60.682 55.000 0.00 0.00 35.06 3.06
55 56 0.035725 TAGAGGTCTCGGCTTCGTCA 60.036 55.000 0.00 0.00 35.06 4.35
56 57 1.093159 TTAGAGGTCTCGGCTTCGTC 58.907 55.000 0.00 0.00 35.06 4.20
57 58 1.542492 TTTAGAGGTCTCGGCTTCGT 58.458 50.000 0.00 0.00 35.06 3.85
58 59 2.649331 TTTTAGAGGTCTCGGCTTCG 57.351 50.000 0.00 0.00 34.09 3.79
59 60 5.903810 TCTAATTTTAGAGGTCTCGGCTTC 58.096 41.667 0.00 0.00 34.99 3.86
60 61 5.934402 TCTAATTTTAGAGGTCTCGGCTT 57.066 39.130 0.00 0.00 34.99 4.35
61 62 5.836358 AGATCTAATTTTAGAGGTCTCGGCT 59.164 40.000 0.00 0.00 42.55 5.52
62 63 6.091718 AGATCTAATTTTAGAGGTCTCGGC 57.908 41.667 0.00 0.00 42.55 5.54
63 64 8.508875 GTCTAGATCTAATTTTAGAGGTCTCGG 58.491 40.741 3.57 3.38 42.55 4.63
64 65 8.508875 GGTCTAGATCTAATTTTAGAGGTCTCG 58.491 40.741 3.57 2.56 42.55 4.04
65 66 8.799367 GGGTCTAGATCTAATTTTAGAGGTCTC 58.201 40.741 2.34 0.00 42.55 3.36
66 67 7.731235 GGGGTCTAGATCTAATTTTAGAGGTCT 59.269 40.741 2.34 7.23 42.55 3.85
67 68 7.731235 AGGGGTCTAGATCTAATTTTAGAGGTC 59.269 40.741 2.34 0.80 42.55 3.85
68 69 7.606581 AGGGGTCTAGATCTAATTTTAGAGGT 58.393 38.462 2.34 0.00 42.55 3.85
69 70 8.499288 AAGGGGTCTAGATCTAATTTTAGAGG 57.501 38.462 2.34 0.00 42.55 3.69
70 71 8.590204 GGAAGGGGTCTAGATCTAATTTTAGAG 58.410 40.741 2.34 0.00 42.55 2.43
71 72 7.513091 GGGAAGGGGTCTAGATCTAATTTTAGA 59.487 40.741 2.34 2.68 43.35 2.10
72 73 7.292591 TGGGAAGGGGTCTAGATCTAATTTTAG 59.707 40.741 2.34 0.00 0.00 1.85
73 74 7.143741 TGGGAAGGGGTCTAGATCTAATTTTA 58.856 38.462 2.34 0.00 0.00 1.52
74 75 5.976870 TGGGAAGGGGTCTAGATCTAATTTT 59.023 40.000 2.34 0.00 0.00 1.82
75 76 5.548573 TGGGAAGGGGTCTAGATCTAATTT 58.451 41.667 2.34 0.00 0.00 1.82
76 77 5.158889 CTGGGAAGGGGTCTAGATCTAATT 58.841 45.833 2.34 0.00 0.00 1.40
77 78 4.757692 CTGGGAAGGGGTCTAGATCTAAT 58.242 47.826 2.34 0.00 0.00 1.73
78 79 3.694537 GCTGGGAAGGGGTCTAGATCTAA 60.695 52.174 2.34 0.00 0.00 2.10
79 80 2.158295 GCTGGGAAGGGGTCTAGATCTA 60.158 54.545 2.34 1.69 0.00 1.98
80 81 1.413808 GCTGGGAAGGGGTCTAGATCT 60.414 57.143 2.34 0.00 0.00 2.75
81 82 1.052617 GCTGGGAAGGGGTCTAGATC 58.947 60.000 0.00 0.00 0.00 2.75
82 83 0.343372 TGCTGGGAAGGGGTCTAGAT 59.657 55.000 0.00 0.00 0.00 1.98
83 84 0.118346 TTGCTGGGAAGGGGTCTAGA 59.882 55.000 0.00 0.00 0.00 2.43
84 85 0.991920 TTTGCTGGGAAGGGGTCTAG 59.008 55.000 0.00 0.00 0.00 2.43
85 86 1.074889 GTTTTGCTGGGAAGGGGTCTA 59.925 52.381 0.00 0.00 0.00 2.59
86 87 0.178961 GTTTTGCTGGGAAGGGGTCT 60.179 55.000 0.00 0.00 0.00 3.85
87 88 0.469144 TGTTTTGCTGGGAAGGGGTC 60.469 55.000 0.00 0.00 0.00 4.46
88 89 0.469892 CTGTTTTGCTGGGAAGGGGT 60.470 55.000 0.00 0.00 0.00 4.95
89 90 0.178964 TCTGTTTTGCTGGGAAGGGG 60.179 55.000 0.00 0.00 0.00 4.79
90 91 1.202927 TCTCTGTTTTGCTGGGAAGGG 60.203 52.381 0.00 0.00 0.00 3.95
91 92 2.276732 TCTCTGTTTTGCTGGGAAGG 57.723 50.000 0.00 0.00 0.00 3.46
92 93 2.555757 CCTTCTCTGTTTTGCTGGGAAG 59.444 50.000 6.72 6.72 46.76 3.46
93 94 2.091885 ACCTTCTCTGTTTTGCTGGGAA 60.092 45.455 0.00 0.00 34.86 3.97
94 95 1.494721 ACCTTCTCTGTTTTGCTGGGA 59.505 47.619 0.00 0.00 0.00 4.37
95 96 1.610522 CACCTTCTCTGTTTTGCTGGG 59.389 52.381 0.00 0.00 0.00 4.45
96 97 1.000938 GCACCTTCTCTGTTTTGCTGG 60.001 52.381 0.00 0.00 0.00 4.85
97 98 1.000938 GGCACCTTCTCTGTTTTGCTG 60.001 52.381 0.00 0.00 0.00 4.41
98 99 1.322442 GGCACCTTCTCTGTTTTGCT 58.678 50.000 0.00 0.00 0.00 3.91
99 100 1.032014 TGGCACCTTCTCTGTTTTGC 58.968 50.000 0.00 0.00 0.00 3.68
100 101 3.131046 ACTTTGGCACCTTCTCTGTTTTG 59.869 43.478 0.00 0.00 0.00 2.44
101 102 3.365472 ACTTTGGCACCTTCTCTGTTTT 58.635 40.909 0.00 0.00 0.00 2.43
102 103 2.952310 GACTTTGGCACCTTCTCTGTTT 59.048 45.455 0.00 0.00 0.00 2.83
103 104 2.092429 TGACTTTGGCACCTTCTCTGTT 60.092 45.455 0.00 0.00 0.00 3.16
104 105 1.490490 TGACTTTGGCACCTTCTCTGT 59.510 47.619 0.00 0.00 0.00 3.41
105 106 2.260844 TGACTTTGGCACCTTCTCTG 57.739 50.000 0.00 0.00 0.00 3.35
106 107 2.373169 TGATGACTTTGGCACCTTCTCT 59.627 45.455 0.00 0.00 0.00 3.10
107 108 2.783135 TGATGACTTTGGCACCTTCTC 58.217 47.619 0.00 0.00 0.00 2.87
108 109 2.887152 GTTGATGACTTTGGCACCTTCT 59.113 45.455 0.00 0.00 0.00 2.85
109 110 2.029918 GGTTGATGACTTTGGCACCTTC 60.030 50.000 0.00 0.00 0.00 3.46
110 111 1.963515 GGTTGATGACTTTGGCACCTT 59.036 47.619 0.00 0.00 0.00 3.50
111 112 1.620822 GGTTGATGACTTTGGCACCT 58.379 50.000 0.00 0.00 0.00 4.00
112 113 0.240945 CGGTTGATGACTTTGGCACC 59.759 55.000 0.00 0.00 0.00 5.01
113 114 0.951558 ACGGTTGATGACTTTGGCAC 59.048 50.000 0.00 0.00 0.00 5.01
114 115 1.234821 GACGGTTGATGACTTTGGCA 58.765 50.000 0.00 0.00 0.00 4.92
115 116 1.069227 GTGACGGTTGATGACTTTGGC 60.069 52.381 0.00 0.00 0.00 4.52
116 117 2.032030 GTGTGACGGTTGATGACTTTGG 60.032 50.000 0.00 0.00 0.00 3.28
117 118 2.032030 GGTGTGACGGTTGATGACTTTG 60.032 50.000 0.00 0.00 0.00 2.77
118 119 2.158813 AGGTGTGACGGTTGATGACTTT 60.159 45.455 0.00 0.00 0.00 2.66
119 120 1.416401 AGGTGTGACGGTTGATGACTT 59.584 47.619 0.00 0.00 0.00 3.01
120 121 1.000955 GAGGTGTGACGGTTGATGACT 59.999 52.381 0.00 0.00 0.00 3.41
121 122 1.000955 AGAGGTGTGACGGTTGATGAC 59.999 52.381 0.00 0.00 0.00 3.06
122 123 1.338107 AGAGGTGTGACGGTTGATGA 58.662 50.000 0.00 0.00 0.00 2.92
123 124 1.800586 CAAGAGGTGTGACGGTTGATG 59.199 52.381 0.00 0.00 0.00 3.07
124 125 1.416401 ACAAGAGGTGTGACGGTTGAT 59.584 47.619 0.00 0.00 39.72 2.57
125 126 0.828022 ACAAGAGGTGTGACGGTTGA 59.172 50.000 0.00 0.00 39.72 3.18
126 127 1.217882 GACAAGAGGTGTGACGGTTG 58.782 55.000 0.00 0.00 41.96 3.77
127 128 0.249322 CGACAAGAGGTGTGACGGTT 60.249 55.000 0.00 0.00 41.96 4.44
128 129 1.362717 CGACAAGAGGTGTGACGGT 59.637 57.895 0.00 0.00 41.96 4.83
129 130 0.663568 GACGACAAGAGGTGTGACGG 60.664 60.000 0.00 0.00 41.96 4.79
130 131 0.663568 GGACGACAAGAGGTGTGACG 60.664 60.000 0.00 0.00 41.96 4.35
131 132 0.387929 TGGACGACAAGAGGTGTGAC 59.612 55.000 0.00 0.00 41.96 3.67
132 133 0.387929 GTGGACGACAAGAGGTGTGA 59.612 55.000 0.00 0.00 41.96 3.58
133 134 0.104120 TGTGGACGACAAGAGGTGTG 59.896 55.000 0.00 0.00 41.96 3.82
134 135 1.048601 ATGTGGACGACAAGAGGTGT 58.951 50.000 0.00 0.00 45.74 4.16
135 136 1.000843 TCATGTGGACGACAAGAGGTG 59.999 52.381 0.00 0.00 38.36 4.00
136 137 1.338107 TCATGTGGACGACAAGAGGT 58.662 50.000 0.00 0.00 38.36 3.85
137 138 2.094026 TCATCATGTGGACGACAAGAGG 60.094 50.000 1.73 1.73 35.80 3.69
138 139 3.236632 TCATCATGTGGACGACAAGAG 57.763 47.619 2.12 0.00 35.80 2.85
139 140 3.258123 TCTTCATCATGTGGACGACAAGA 59.742 43.478 0.00 0.00 38.36 3.02
140 141 3.588955 TCTTCATCATGTGGACGACAAG 58.411 45.455 0.00 0.00 38.36 3.16
141 142 3.676291 TCTTCATCATGTGGACGACAA 57.324 42.857 0.00 0.00 38.36 3.18
142 143 3.588955 CTTCTTCATCATGTGGACGACA 58.411 45.455 0.00 0.00 39.53 4.35
143 144 2.349886 GCTTCTTCATCATGTGGACGAC 59.650 50.000 0.00 0.00 0.00 4.34
144 145 2.028203 TGCTTCTTCATCATGTGGACGA 60.028 45.455 0.00 0.00 0.00 4.20
145 146 2.094894 GTGCTTCTTCATCATGTGGACG 59.905 50.000 0.00 0.00 0.00 4.79
146 147 3.076621 TGTGCTTCTTCATCATGTGGAC 58.923 45.455 0.00 0.00 0.00 4.02
147 148 3.340928 CTGTGCTTCTTCATCATGTGGA 58.659 45.455 0.00 0.00 0.00 4.02
148 149 2.159421 GCTGTGCTTCTTCATCATGTGG 60.159 50.000 0.00 0.00 0.00 4.17
149 150 2.159421 GGCTGTGCTTCTTCATCATGTG 60.159 50.000 0.00 0.00 0.00 3.21
150 151 2.089980 GGCTGTGCTTCTTCATCATGT 58.910 47.619 0.00 0.00 0.00 3.21
151 152 2.089201 TGGCTGTGCTTCTTCATCATG 58.911 47.619 0.00 0.00 0.00 3.07
152 153 2.089980 GTGGCTGTGCTTCTTCATCAT 58.910 47.619 0.00 0.00 0.00 2.45
153 154 1.527034 GTGGCTGTGCTTCTTCATCA 58.473 50.000 0.00 0.00 0.00 3.07
154 155 0.807496 GGTGGCTGTGCTTCTTCATC 59.193 55.000 0.00 0.00 0.00 2.92
155 156 0.111061 TGGTGGCTGTGCTTCTTCAT 59.889 50.000 0.00 0.00 0.00 2.57
156 157 0.819259 GTGGTGGCTGTGCTTCTTCA 60.819 55.000 0.00 0.00 0.00 3.02
157 158 1.518903 GGTGGTGGCTGTGCTTCTTC 61.519 60.000 0.00 0.00 0.00 2.87
158 159 1.529244 GGTGGTGGCTGTGCTTCTT 60.529 57.895 0.00 0.00 0.00 2.52
159 160 2.113986 GGTGGTGGCTGTGCTTCT 59.886 61.111 0.00 0.00 0.00 2.85
160 161 3.357079 CGGTGGTGGCTGTGCTTC 61.357 66.667 0.00 0.00 0.00 3.86
170 171 2.665089 TATCAGGGTGGCGGTGGTG 61.665 63.158 0.00 0.00 0.00 4.17
171 172 2.285069 TATCAGGGTGGCGGTGGT 60.285 61.111 0.00 0.00 0.00 4.16
172 173 2.189521 GTATCAGGGTGGCGGTGG 59.810 66.667 0.00 0.00 0.00 4.61
173 174 2.189521 GGTATCAGGGTGGCGGTG 59.810 66.667 0.00 0.00 0.00 4.94
174 175 2.285069 TGGTATCAGGGTGGCGGT 60.285 61.111 0.00 0.00 0.00 5.68
175 176 2.505982 CTGGTATCAGGGTGGCGG 59.494 66.667 0.00 0.00 37.36 6.13
176 177 2.203070 GCTGGTATCAGGGTGGCG 60.203 66.667 4.87 0.00 41.19 5.69
177 178 2.193248 GGCTGGTATCAGGGTGGC 59.807 66.667 4.87 0.00 41.19 5.01
178 179 0.982852 TCTGGCTGGTATCAGGGTGG 60.983 60.000 4.87 0.00 41.19 4.61
179 180 0.467384 CTCTGGCTGGTATCAGGGTG 59.533 60.000 4.87 0.00 41.19 4.61
180 181 0.339859 TCTCTGGCTGGTATCAGGGT 59.660 55.000 4.87 0.00 41.19 4.34
181 182 1.047002 CTCTCTGGCTGGTATCAGGG 58.953 60.000 4.87 0.00 41.19 4.45
182 183 0.392336 GCTCTCTGGCTGGTATCAGG 59.608 60.000 4.87 0.00 41.19 3.86
183 184 1.117994 TGCTCTCTGGCTGGTATCAG 58.882 55.000 0.00 0.00 43.64 2.90
184 185 1.798626 ATGCTCTCTGGCTGGTATCA 58.201 50.000 0.00 0.00 0.00 2.15
185 186 2.028567 GGTATGCTCTCTGGCTGGTATC 60.029 54.545 0.00 0.00 0.00 2.24
186 187 1.974236 GGTATGCTCTCTGGCTGGTAT 59.026 52.381 0.00 0.00 0.00 2.73
187 188 1.414158 GGTATGCTCTCTGGCTGGTA 58.586 55.000 0.00 0.00 0.00 3.25
188 189 1.680522 CGGTATGCTCTCTGGCTGGT 61.681 60.000 0.00 0.00 0.00 4.00
189 190 1.068753 CGGTATGCTCTCTGGCTGG 59.931 63.158 0.00 0.00 0.00 4.85
190 191 0.031857 CTCGGTATGCTCTCTGGCTG 59.968 60.000 0.00 0.00 0.00 4.85
191 192 0.396417 ACTCGGTATGCTCTCTGGCT 60.396 55.000 0.00 0.00 0.00 4.75
192 193 1.268352 CTACTCGGTATGCTCTCTGGC 59.732 57.143 0.00 0.00 0.00 4.85
193 194 1.268352 GCTACTCGGTATGCTCTCTGG 59.732 57.143 0.00 0.00 0.00 3.86
194 195 1.268352 GGCTACTCGGTATGCTCTCTG 59.732 57.143 0.00 0.00 0.00 3.35
195 196 1.611519 GGCTACTCGGTATGCTCTCT 58.388 55.000 0.00 0.00 0.00 3.10
196 197 0.599060 GGGCTACTCGGTATGCTCTC 59.401 60.000 0.00 0.00 0.00 3.20
197 198 1.173444 CGGGCTACTCGGTATGCTCT 61.173 60.000 0.00 0.00 0.00 4.09
198 199 1.286260 CGGGCTACTCGGTATGCTC 59.714 63.158 0.00 0.00 0.00 4.26
199 200 2.857744 GCGGGCTACTCGGTATGCT 61.858 63.158 0.00 0.00 0.00 3.79
200 201 2.355956 GCGGGCTACTCGGTATGC 60.356 66.667 0.00 0.00 0.00 3.14
201 202 2.338984 GGCGGGCTACTCGGTATG 59.661 66.667 0.00 0.00 0.00 2.39
202 203 2.123597 TGGCGGGCTACTCGGTAT 60.124 61.111 2.38 0.00 0.00 2.73
203 204 3.142838 GTGGCGGGCTACTCGGTA 61.143 66.667 2.38 0.00 0.00 4.02
207 208 3.682292 CTTGGGTGGCGGGCTACTC 62.682 68.421 7.11 3.50 0.00 2.59
208 209 3.717294 CTTGGGTGGCGGGCTACT 61.717 66.667 7.11 0.00 0.00 2.57
209 210 4.796495 CCTTGGGTGGCGGGCTAC 62.796 72.222 2.38 0.00 0.00 3.58
227 228 3.873026 GAGATGCGAGGGCGATGGG 62.873 68.421 0.00 0.00 44.10 4.00
228 229 2.356793 GAGATGCGAGGGCGATGG 60.357 66.667 0.00 0.00 44.10 3.51
229 230 1.953138 GTGAGATGCGAGGGCGATG 60.953 63.158 0.00 0.00 44.10 3.84
230 231 2.081425 GAGTGAGATGCGAGGGCGAT 62.081 60.000 0.00 0.00 44.10 4.58
231 232 2.755876 AGTGAGATGCGAGGGCGA 60.756 61.111 0.00 0.00 44.10 5.54
232 233 2.279120 GAGTGAGATGCGAGGGCG 60.279 66.667 0.00 0.00 44.10 6.13
233 234 1.227205 CAGAGTGAGATGCGAGGGC 60.227 63.158 0.00 0.00 40.52 5.19
234 235 0.820226 TTCAGAGTGAGATGCGAGGG 59.180 55.000 0.00 0.00 0.00 4.30
235 236 1.470632 GGTTCAGAGTGAGATGCGAGG 60.471 57.143 0.00 0.00 0.00 4.63
236 237 1.476085 AGGTTCAGAGTGAGATGCGAG 59.524 52.381 0.00 0.00 0.00 5.03
237 238 1.474478 GAGGTTCAGAGTGAGATGCGA 59.526 52.381 0.00 0.00 0.00 5.10
238 239 1.476085 AGAGGTTCAGAGTGAGATGCG 59.524 52.381 0.00 0.00 0.00 4.73
239 240 2.495270 TGAGAGGTTCAGAGTGAGATGC 59.505 50.000 0.00 0.00 0.00 3.91
240 241 3.763360 AGTGAGAGGTTCAGAGTGAGATG 59.237 47.826 0.00 0.00 36.21 2.90
241 242 3.763360 CAGTGAGAGGTTCAGAGTGAGAT 59.237 47.826 0.00 0.00 36.21 2.75
242 243 3.153130 CAGTGAGAGGTTCAGAGTGAGA 58.847 50.000 0.00 0.00 36.21 3.27
243 244 3.057596 GTCAGTGAGAGGTTCAGAGTGAG 60.058 52.174 0.00 0.00 36.21 3.51
244 245 2.887783 GTCAGTGAGAGGTTCAGAGTGA 59.112 50.000 0.00 0.00 36.21 3.41
245 246 2.351253 CGTCAGTGAGAGGTTCAGAGTG 60.351 54.545 0.00 0.00 36.21 3.51
246 247 1.883275 CGTCAGTGAGAGGTTCAGAGT 59.117 52.381 0.00 0.00 36.21 3.24
247 248 1.883275 ACGTCAGTGAGAGGTTCAGAG 59.117 52.381 0.00 0.00 42.35 3.35
248 249 1.880675 GACGTCAGTGAGAGGTTCAGA 59.119 52.381 11.55 0.00 44.79 3.27
249 250 1.609072 TGACGTCAGTGAGAGGTTCAG 59.391 52.381 15.76 0.00 44.79 3.02
250 251 1.687563 TGACGTCAGTGAGAGGTTCA 58.312 50.000 15.76 0.00 44.79 3.18
251 252 2.795175 TTGACGTCAGTGAGAGGTTC 57.205 50.000 19.11 0.00 44.79 3.62
252 253 3.195661 GTTTTGACGTCAGTGAGAGGTT 58.804 45.455 19.11 0.00 44.79 3.50
254 255 2.540101 GTGTTTTGACGTCAGTGAGAGG 59.460 50.000 19.11 0.00 38.10 3.69
255 256 3.000322 GTGTGTTTTGACGTCAGTGAGAG 60.000 47.826 19.11 0.00 0.00 3.20
256 257 2.927477 GTGTGTTTTGACGTCAGTGAGA 59.073 45.455 19.11 0.00 0.00 3.27
257 258 2.670905 TGTGTGTTTTGACGTCAGTGAG 59.329 45.455 19.11 0.00 0.00 3.51
258 259 2.689646 TGTGTGTTTTGACGTCAGTGA 58.310 42.857 19.11 6.31 0.00 3.41
259 260 3.463533 TTGTGTGTTTTGACGTCAGTG 57.536 42.857 19.11 0.00 0.00 3.66
260 261 3.665848 CGTTTGTGTGTTTTGACGTCAGT 60.666 43.478 19.11 0.00 0.00 3.41
261 262 2.837878 CGTTTGTGTGTTTTGACGTCAG 59.162 45.455 19.11 0.00 0.00 3.51
262 263 2.840673 CGTTTGTGTGTTTTGACGTCA 58.159 42.857 15.76 15.76 0.00 4.35
263 264 1.575803 GCGTTTGTGTGTTTTGACGTC 59.424 47.619 9.11 9.11 33.46 4.34
264 265 1.608822 GCGTTTGTGTGTTTTGACGT 58.391 45.000 0.00 0.00 33.46 4.34
265 266 0.911184 GGCGTTTGTGTGTTTTGACG 59.089 50.000 0.00 0.00 0.00 4.35
266 267 1.651631 GTGGCGTTTGTGTGTTTTGAC 59.348 47.619 0.00 0.00 0.00 3.18
267 268 1.402984 GGTGGCGTTTGTGTGTTTTGA 60.403 47.619 0.00 0.00 0.00 2.69
268 269 0.995728 GGTGGCGTTTGTGTGTTTTG 59.004 50.000 0.00 0.00 0.00 2.44
269 270 0.456995 CGGTGGCGTTTGTGTGTTTT 60.457 50.000 0.00 0.00 0.00 2.43
270 271 1.137825 CGGTGGCGTTTGTGTGTTT 59.862 52.632 0.00 0.00 0.00 2.83
271 272 1.745864 TCGGTGGCGTTTGTGTGTT 60.746 52.632 0.00 0.00 0.00 3.32
272 273 2.125065 TCGGTGGCGTTTGTGTGT 60.125 55.556 0.00 0.00 0.00 3.72
273 274 2.326550 GTCGGTGGCGTTTGTGTG 59.673 61.111 0.00 0.00 0.00 3.82
274 275 2.898343 GGTCGGTGGCGTTTGTGT 60.898 61.111 0.00 0.00 0.00 3.72
275 276 4.007940 CGGTCGGTGGCGTTTGTG 62.008 66.667 0.00 0.00 0.00 3.33
284 285 3.827898 GAGAGGAGCCGGTCGGTG 61.828 72.222 11.25 0.00 37.65 4.94
288 289 2.066999 ATTGGGAGAGGAGCCGGTC 61.067 63.158 1.90 0.00 0.00 4.79
289 290 2.041265 ATTGGGAGAGGAGCCGGT 59.959 61.111 1.90 0.00 0.00 5.28
290 291 1.626356 TTCATTGGGAGAGGAGCCGG 61.626 60.000 0.00 0.00 0.00 6.13
291 292 0.471617 ATTCATTGGGAGAGGAGCCG 59.528 55.000 0.00 0.00 0.00 5.52
292 293 1.492176 TCATTCATTGGGAGAGGAGCC 59.508 52.381 0.00 0.00 0.00 4.70
293 294 3.212685 CTTCATTCATTGGGAGAGGAGC 58.787 50.000 0.00 0.00 0.00 4.70
294 295 3.457380 TCCTTCATTCATTGGGAGAGGAG 59.543 47.826 0.00 0.00 0.00 3.69
295 296 3.463825 TCCTTCATTCATTGGGAGAGGA 58.536 45.455 0.00 0.00 0.00 3.71
296 297 3.939740 TCCTTCATTCATTGGGAGAGG 57.060 47.619 0.00 0.00 0.00 3.69
297 298 6.822676 GCTATATCCTTCATTCATTGGGAGAG 59.177 42.308 0.00 0.00 0.00 3.20
298 299 6.273026 TGCTATATCCTTCATTCATTGGGAGA 59.727 38.462 0.00 0.00 0.00 3.71
299 300 6.479006 TGCTATATCCTTCATTCATTGGGAG 58.521 40.000 0.00 0.00 0.00 4.30
300 301 6.452757 TGCTATATCCTTCATTCATTGGGA 57.547 37.500 0.00 0.00 0.00 4.37
301 302 7.528996 TTTGCTATATCCTTCATTCATTGGG 57.471 36.000 0.00 0.00 0.00 4.12
302 303 9.021807 AGATTTGCTATATCCTTCATTCATTGG 57.978 33.333 0.00 0.00 0.00 3.16
306 307 9.208022 CGTAAGATTTGCTATATCCTTCATTCA 57.792 33.333 0.00 0.00 43.02 2.57
307 308 8.171840 GCGTAAGATTTGCTATATCCTTCATTC 58.828 37.037 0.00 0.00 43.02 2.67
308 309 7.148573 CGCGTAAGATTTGCTATATCCTTCATT 60.149 37.037 0.00 0.00 43.02 2.57
309 310 6.311445 CGCGTAAGATTTGCTATATCCTTCAT 59.689 38.462 0.00 0.00 43.02 2.57
310 311 5.633601 CGCGTAAGATTTGCTATATCCTTCA 59.366 40.000 0.00 0.00 43.02 3.02
311 312 5.634020 ACGCGTAAGATTTGCTATATCCTTC 59.366 40.000 11.67 0.00 43.02 3.46
312 313 5.539048 ACGCGTAAGATTTGCTATATCCTT 58.461 37.500 11.67 0.00 43.02 3.36
313 314 5.135508 ACGCGTAAGATTTGCTATATCCT 57.864 39.130 11.67 0.00 43.02 3.24
314 315 5.004535 GCTACGCGTAAGATTTGCTATATCC 59.995 44.000 20.97 0.00 43.02 2.59
315 316 5.571741 TGCTACGCGTAAGATTTGCTATATC 59.428 40.000 20.97 0.00 43.02 1.63
316 317 5.466819 TGCTACGCGTAAGATTTGCTATAT 58.533 37.500 20.97 0.00 43.02 0.86
317 318 4.862350 TGCTACGCGTAAGATTTGCTATA 58.138 39.130 20.97 0.66 43.02 1.31
318 319 3.713288 TGCTACGCGTAAGATTTGCTAT 58.287 40.909 20.97 0.00 43.02 2.97
319 320 3.153676 TGCTACGCGTAAGATTTGCTA 57.846 42.857 20.97 7.10 43.02 3.49
320 321 2.004583 TGCTACGCGTAAGATTTGCT 57.995 45.000 20.97 0.00 43.02 3.91
321 322 2.347452 TCTTGCTACGCGTAAGATTTGC 59.653 45.455 20.97 18.32 39.08 3.68
322 323 3.612860 AGTCTTGCTACGCGTAAGATTTG 59.387 43.478 21.93 10.70 44.42 2.32
323 324 3.612860 CAGTCTTGCTACGCGTAAGATTT 59.387 43.478 21.93 12.97 44.42 2.17
324 325 3.119602 TCAGTCTTGCTACGCGTAAGATT 60.120 43.478 21.93 16.59 44.42 2.40
325 326 2.422479 TCAGTCTTGCTACGCGTAAGAT 59.578 45.455 21.93 11.08 44.42 2.40
326 327 1.808343 TCAGTCTTGCTACGCGTAAGA 59.192 47.619 20.97 18.65 41.25 2.10
327 328 2.257974 TCAGTCTTGCTACGCGTAAG 57.742 50.000 20.97 16.57 36.76 2.34
328 329 2.526077 CATCAGTCTTGCTACGCGTAA 58.474 47.619 20.97 6.59 0.00 3.18
329 330 1.202256 CCATCAGTCTTGCTACGCGTA 60.202 52.381 19.40 19.40 0.00 4.42
330 331 0.458543 CCATCAGTCTTGCTACGCGT 60.459 55.000 19.17 19.17 0.00 6.01
331 332 1.148157 CCCATCAGTCTTGCTACGCG 61.148 60.000 3.53 3.53 0.00 6.01
332 333 0.108138 ACCCATCAGTCTTGCTACGC 60.108 55.000 0.00 0.00 0.00 4.42
333 334 1.478510 AGACCCATCAGTCTTGCTACG 59.521 52.381 0.00 0.00 44.83 3.51
334 335 4.402793 TCTTAGACCCATCAGTCTTGCTAC 59.597 45.833 0.00 0.00 44.83 3.58
335 336 4.610333 TCTTAGACCCATCAGTCTTGCTA 58.390 43.478 0.00 0.00 44.83 3.49
336 337 3.445008 TCTTAGACCCATCAGTCTTGCT 58.555 45.455 0.00 0.00 44.83 3.91
337 338 3.196685 ACTCTTAGACCCATCAGTCTTGC 59.803 47.826 0.00 0.00 44.83 4.01
338 339 5.413309 AACTCTTAGACCCATCAGTCTTG 57.587 43.478 0.00 0.00 44.83 3.02
339 340 7.554959 TTAAACTCTTAGACCCATCAGTCTT 57.445 36.000 0.00 0.00 44.83 3.01
341 342 8.617290 TTTTTAAACTCTTAGACCCATCAGTC 57.383 34.615 0.00 0.00 37.01 3.51
364 365 8.398878 TGGTTAGACCGATCAGTTTTATTTTT 57.601 30.769 0.00 0.00 42.58 1.94
365 366 7.989416 TGGTTAGACCGATCAGTTTTATTTT 57.011 32.000 0.00 0.00 42.58 1.82
366 367 7.989416 TTGGTTAGACCGATCAGTTTTATTT 57.011 32.000 0.00 0.00 42.58 1.40
367 368 7.067008 CCATTGGTTAGACCGATCAGTTTTATT 59.933 37.037 0.00 0.00 40.40 1.40
368 369 6.542370 CCATTGGTTAGACCGATCAGTTTTAT 59.458 38.462 0.00 0.00 40.40 1.40
369 370 5.878116 CCATTGGTTAGACCGATCAGTTTTA 59.122 40.000 0.00 0.00 40.40 1.52
370 371 4.700213 CCATTGGTTAGACCGATCAGTTTT 59.300 41.667 0.00 0.00 40.40 2.43
371 372 4.019681 TCCATTGGTTAGACCGATCAGTTT 60.020 41.667 1.86 0.00 40.40 2.66
372 373 3.517901 TCCATTGGTTAGACCGATCAGTT 59.482 43.478 1.86 0.00 40.40 3.16
373 374 3.104512 TCCATTGGTTAGACCGATCAGT 58.895 45.455 1.86 0.00 40.40 3.41
374 375 3.819564 TCCATTGGTTAGACCGATCAG 57.180 47.619 1.86 0.00 40.40 2.90
375 376 3.517901 ACTTCCATTGGTTAGACCGATCA 59.482 43.478 1.86 0.00 40.40 2.92
376 377 4.138487 ACTTCCATTGGTTAGACCGATC 57.862 45.455 1.86 0.00 40.40 3.69
377 378 5.687166 TTACTTCCATTGGTTAGACCGAT 57.313 39.130 1.86 0.00 43.15 4.18
378 379 5.046159 ACATTACTTCCATTGGTTAGACCGA 60.046 40.000 1.86 0.00 42.58 4.69
379 380 5.183228 ACATTACTTCCATTGGTTAGACCG 58.817 41.667 1.86 0.00 42.58 4.79
380 381 5.293569 CGACATTACTTCCATTGGTTAGACC 59.706 44.000 1.86 0.00 39.22 3.85
381 382 5.873164 ACGACATTACTTCCATTGGTTAGAC 59.127 40.000 1.86 0.00 0.00 2.59
382 383 6.045072 ACGACATTACTTCCATTGGTTAGA 57.955 37.500 1.86 0.00 0.00 2.10
383 384 6.036083 CAGACGACATTACTTCCATTGGTTAG 59.964 42.308 1.86 4.50 0.00 2.34
384 385 5.872617 CAGACGACATTACTTCCATTGGTTA 59.127 40.000 1.86 0.00 0.00 2.85
385 386 4.695455 CAGACGACATTACTTCCATTGGTT 59.305 41.667 1.86 0.00 0.00 3.67
386 387 4.253685 CAGACGACATTACTTCCATTGGT 58.746 43.478 1.86 0.00 0.00 3.67
387 388 4.093408 CACAGACGACATTACTTCCATTGG 59.907 45.833 0.00 0.00 0.00 3.16
388 389 4.690748 ACACAGACGACATTACTTCCATTG 59.309 41.667 0.00 0.00 0.00 2.82
389 390 4.894784 ACACAGACGACATTACTTCCATT 58.105 39.130 0.00 0.00 0.00 3.16
390 391 4.537135 ACACAGACGACATTACTTCCAT 57.463 40.909 0.00 0.00 0.00 3.41
391 392 4.330944 AACACAGACGACATTACTTCCA 57.669 40.909 0.00 0.00 0.00 3.53
392 393 6.963049 ATTAACACAGACGACATTACTTCC 57.037 37.500 0.00 0.00 0.00 3.46
393 394 7.488471 AGCTATTAACACAGACGACATTACTTC 59.512 37.037 0.00 0.00 0.00 3.01
394 395 7.321153 AGCTATTAACACAGACGACATTACTT 58.679 34.615 0.00 0.00 0.00 2.24
395 396 6.864342 AGCTATTAACACAGACGACATTACT 58.136 36.000 0.00 0.00 0.00 2.24
396 397 7.521509 AAGCTATTAACACAGACGACATTAC 57.478 36.000 0.00 0.00 0.00 1.89
397 398 8.464404 ACTAAGCTATTAACACAGACGACATTA 58.536 33.333 0.00 0.00 0.00 1.90
398 399 7.321153 ACTAAGCTATTAACACAGACGACATT 58.679 34.615 0.00 0.00 0.00 2.71
399 400 6.864342 ACTAAGCTATTAACACAGACGACAT 58.136 36.000 0.00 0.00 0.00 3.06
400 401 6.263516 ACTAAGCTATTAACACAGACGACA 57.736 37.500 0.00 0.00 0.00 4.35
401 402 7.470900 ACTACTAAGCTATTAACACAGACGAC 58.529 38.462 0.00 0.00 0.00 4.34
402 403 7.621428 ACTACTAAGCTATTAACACAGACGA 57.379 36.000 0.00 0.00 0.00 4.20
403 404 8.824781 TCTACTACTAAGCTATTAACACAGACG 58.175 37.037 0.00 0.00 0.00 4.18
448 449 9.169592 CGGAGGGAGTAGTTATTTTTGAATTTA 57.830 33.333 0.00 0.00 0.00 1.40
449 450 7.668469 ACGGAGGGAGTAGTTATTTTTGAATTT 59.332 33.333 0.00 0.00 0.00 1.82
450 451 7.173032 ACGGAGGGAGTAGTTATTTTTGAATT 58.827 34.615 0.00 0.00 0.00 2.17
451 452 6.718294 ACGGAGGGAGTAGTTATTTTTGAAT 58.282 36.000 0.00 0.00 0.00 2.57
452 453 6.117975 ACGGAGGGAGTAGTTATTTTTGAA 57.882 37.500 0.00 0.00 0.00 2.69
453 454 5.750352 ACGGAGGGAGTAGTTATTTTTGA 57.250 39.130 0.00 0.00 0.00 2.69
454 455 6.428771 TGAAACGGAGGGAGTAGTTATTTTTG 59.571 38.462 0.00 0.00 0.00 2.44
455 456 6.536447 TGAAACGGAGGGAGTAGTTATTTTT 58.464 36.000 0.00 0.00 0.00 1.94
456 457 6.117975 TGAAACGGAGGGAGTAGTTATTTT 57.882 37.500 0.00 0.00 0.00 1.82
457 458 5.750352 TGAAACGGAGGGAGTAGTTATTT 57.250 39.130 0.00 0.00 0.00 1.40
458 459 5.750352 TTGAAACGGAGGGAGTAGTTATT 57.250 39.130 0.00 0.00 0.00 1.40
459 460 5.750352 TTTGAAACGGAGGGAGTAGTTAT 57.250 39.130 0.00 0.00 0.00 1.89
460 461 5.750352 ATTTGAAACGGAGGGAGTAGTTA 57.250 39.130 0.00 0.00 0.00 2.24
461 462 4.635699 ATTTGAAACGGAGGGAGTAGTT 57.364 40.909 0.00 0.00 0.00 2.24
462 463 4.635699 AATTTGAAACGGAGGGAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
463 464 5.731591 AGTAATTTGAAACGGAGGGAGTAG 58.268 41.667 0.00 0.00 0.00 2.57
464 465 5.622914 CGAGTAATTTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
465 466 4.576879 GAGTAATTTGAAACGGAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
466 467 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
467 468 3.592059 CGAGTAATTTGAAACGGAGGGA 58.408 45.455 0.00 0.00 0.00 4.20
468 469 2.095372 GCGAGTAATTTGAAACGGAGGG 59.905 50.000 0.00 0.00 0.00 4.30
469 470 2.222729 CGCGAGTAATTTGAAACGGAGG 60.223 50.000 0.00 0.00 0.00 4.30
470 471 2.783316 GCGCGAGTAATTTGAAACGGAG 60.783 50.000 12.10 0.00 0.00 4.63
471 472 1.127213 GCGCGAGTAATTTGAAACGGA 59.873 47.619 12.10 0.00 0.00 4.69
472 473 1.136197 TGCGCGAGTAATTTGAAACGG 60.136 47.619 12.10 0.00 0.00 4.44
473 474 2.158143 CTGCGCGAGTAATTTGAAACG 58.842 47.619 12.10 0.00 0.00 3.60
474 475 3.449322 TCTGCGCGAGTAATTTGAAAC 57.551 42.857 12.10 0.00 0.00 2.78
475 476 4.475763 TTTCTGCGCGAGTAATTTGAAA 57.524 36.364 12.10 4.85 0.00 2.69
476 477 4.153296 TCATTTCTGCGCGAGTAATTTGAA 59.847 37.500 12.10 0.00 0.00 2.69
477 478 3.682377 TCATTTCTGCGCGAGTAATTTGA 59.318 39.130 12.10 0.58 0.00 2.69
478 479 4.002267 TCATTTCTGCGCGAGTAATTTG 57.998 40.909 12.10 0.00 0.00 2.32
479 480 4.678509 TTCATTTCTGCGCGAGTAATTT 57.321 36.364 12.10 0.00 0.00 1.82
480 481 4.094887 ACATTCATTTCTGCGCGAGTAATT 59.905 37.500 12.10 0.00 0.00 1.40
481 482 3.623060 ACATTCATTTCTGCGCGAGTAAT 59.377 39.130 12.10 7.41 0.00 1.89
482 483 3.000041 ACATTCATTTCTGCGCGAGTAA 59.000 40.909 12.10 5.16 0.00 2.24
483 484 2.616960 ACATTCATTTCTGCGCGAGTA 58.383 42.857 12.10 0.00 0.00 2.59
484 485 1.442769 ACATTCATTTCTGCGCGAGT 58.557 45.000 12.10 0.00 0.00 4.18
485 486 3.492383 AGATACATTCATTTCTGCGCGAG 59.508 43.478 12.10 4.52 0.00 5.03
486 487 3.457234 AGATACATTCATTTCTGCGCGA 58.543 40.909 12.10 0.00 0.00 5.87
487 488 3.867055 AGATACATTCATTTCTGCGCG 57.133 42.857 0.00 0.00 0.00 6.86
488 489 6.201806 ACTTCTAGATACATTCATTTCTGCGC 59.798 38.462 0.00 0.00 0.00 6.09
489 490 7.706281 ACTTCTAGATACATTCATTTCTGCG 57.294 36.000 0.00 0.00 0.00 5.18
516 517 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
517 518 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
518 519 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
519 520 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
520 521 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
521 522 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
522 523 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
523 524 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
524 525 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
525 526 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
526 527 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
527 528 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
528 529 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
529 530 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
530 531 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
531 532 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
532 533 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
533 534 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
534 535 4.109766 TCGAATTACTTGTCGCAGGTATG 58.890 43.478 3.46 0.00 37.19 2.39
535 536 4.380841 TCGAATTACTTGTCGCAGGTAT 57.619 40.909 3.46 0.00 37.19 2.73
536 537 3.853831 TCGAATTACTTGTCGCAGGTA 57.146 42.857 0.00 0.00 37.19 3.08
537 538 2.736144 TCGAATTACTTGTCGCAGGT 57.264 45.000 0.00 0.91 37.19 4.00
538 539 4.092821 TCATTTCGAATTACTTGTCGCAGG 59.907 41.667 0.00 0.00 37.19 4.85
539 540 5.203358 TCATTTCGAATTACTTGTCGCAG 57.797 39.130 0.00 0.00 37.19 5.18
540 541 5.390461 CCTTCATTTCGAATTACTTGTCGCA 60.390 40.000 0.00 0.00 37.19 5.10
541 542 5.022021 CCTTCATTTCGAATTACTTGTCGC 58.978 41.667 0.00 0.00 37.19 5.19
542 543 5.350365 TCCCTTCATTTCGAATTACTTGTCG 59.650 40.000 0.00 0.00 38.62 4.35
543 544 6.371825 ACTCCCTTCATTTCGAATTACTTGTC 59.628 38.462 0.00 0.00 31.69 3.18
544 545 6.238648 ACTCCCTTCATTTCGAATTACTTGT 58.761 36.000 0.00 0.00 31.69 3.16
545 546 6.743575 ACTCCCTTCATTTCGAATTACTTG 57.256 37.500 0.00 0.00 31.69 3.16
546 547 8.265055 TCATACTCCCTTCATTTCGAATTACTT 58.735 33.333 0.00 0.00 31.69 2.24
547 548 7.792032 TCATACTCCCTTCATTTCGAATTACT 58.208 34.615 0.00 0.00 31.69 2.24
548 549 8.336080 GTTCATACTCCCTTCATTTCGAATTAC 58.664 37.037 0.00 0.00 31.69 1.89
549 550 8.044309 TGTTCATACTCCCTTCATTTCGAATTA 58.956 33.333 0.00 0.00 31.69 1.40
550 551 6.884295 TGTTCATACTCCCTTCATTTCGAATT 59.116 34.615 0.00 0.00 31.69 2.17
551 552 6.414732 TGTTCATACTCCCTTCATTTCGAAT 58.585 36.000 0.00 0.00 31.69 3.34
552 553 5.800296 TGTTCATACTCCCTTCATTTCGAA 58.200 37.500 0.00 0.00 0.00 3.71
553 554 5.414789 TGTTCATACTCCCTTCATTTCGA 57.585 39.130 0.00 0.00 0.00 3.71
554 555 6.371548 TCTTTGTTCATACTCCCTTCATTTCG 59.628 38.462 0.00 0.00 0.00 3.46
555 556 7.687941 TCTTTGTTCATACTCCCTTCATTTC 57.312 36.000 0.00 0.00 0.00 2.17
556 557 8.477419 TTTCTTTGTTCATACTCCCTTCATTT 57.523 30.769 0.00 0.00 0.00 2.32
557 558 8.655935 ATTTCTTTGTTCATACTCCCTTCATT 57.344 30.769 0.00 0.00 0.00 2.57
558 559 7.890127 TGATTTCTTTGTTCATACTCCCTTCAT 59.110 33.333 0.00 0.00 0.00 2.57
559 560 7.174946 GTGATTTCTTTGTTCATACTCCCTTCA 59.825 37.037 0.00 0.00 0.00 3.02
560 561 7.174946 TGTGATTTCTTTGTTCATACTCCCTTC 59.825 37.037 0.00 0.00 0.00 3.46
561 562 7.004086 TGTGATTTCTTTGTTCATACTCCCTT 58.996 34.615 0.00 0.00 0.00 3.95
562 563 6.542821 TGTGATTTCTTTGTTCATACTCCCT 58.457 36.000 0.00 0.00 0.00 4.20
563 564 6.817765 TGTGATTTCTTTGTTCATACTCCC 57.182 37.500 0.00 0.00 0.00 4.30
564 565 8.734386 AGAATGTGATTTCTTTGTTCATACTCC 58.266 33.333 0.00 0.00 31.94 3.85
567 568 9.994432 CCTAGAATGTGATTTCTTTGTTCATAC 57.006 33.333 0.00 0.00 37.20 2.39
568 569 9.958180 TCCTAGAATGTGATTTCTTTGTTCATA 57.042 29.630 0.00 0.00 37.20 2.15
583 584 6.531503 TCAACTTCCTACTCCTAGAATGTG 57.468 41.667 0.00 0.00 0.00 3.21
589 590 6.760291 ACAGTTTTCAACTTCCTACTCCTAG 58.240 40.000 0.00 0.00 40.46 3.02
591 592 5.632034 ACAGTTTTCAACTTCCTACTCCT 57.368 39.130 0.00 0.00 40.46 3.69
607 608 4.286032 TCCAGCAAGGATGTAGTACAGTTT 59.714 41.667 9.25 0.56 43.07 2.66
608 609 3.838317 TCCAGCAAGGATGTAGTACAGTT 59.162 43.478 9.25 0.00 43.07 3.16
622 623 5.211174 TGATCTGATCTACATCCAGCAAG 57.789 43.478 17.82 0.00 0.00 4.01
634 639 3.244491 GCCTGCCAATACTGATCTGATCT 60.244 47.826 17.82 2.23 0.00 2.75
654 679 0.390860 ACGGCATCATCACTCTAGCC 59.609 55.000 0.00 0.00 38.73 3.93
670 695 1.153349 GCCCTGCCTTCTAGAACGG 60.153 63.158 0.00 8.63 0.00 4.44
810 839 2.546795 GGGGACATGACATCGATCACTC 60.547 54.545 0.00 0.00 0.00 3.51
883 913 3.696051 TGAAGCTTGTGATTATGAAGGGC 59.304 43.478 2.10 0.00 0.00 5.19
931 961 1.966451 GTGGGCTGGGAGTTCAACG 60.966 63.158 0.00 0.00 0.00 4.10
935 965 1.617947 ATCGAGTGGGCTGGGAGTTC 61.618 60.000 0.00 0.00 0.00 3.01
946 976 1.522569 GAGTTGGGGGATCGAGTGG 59.477 63.158 0.00 0.00 0.00 4.00
954 984 2.747686 GAGTTGCGAGTTGGGGGA 59.252 61.111 0.00 0.00 0.00 4.81
972 1002 4.011517 TTCGGCTTGGTCGGGGTC 62.012 66.667 0.00 0.00 0.00 4.46
1334 1388 0.179006 GGAGTTGGGAGATCATGGCC 60.179 60.000 0.00 0.00 0.00 5.36
1402 1484 5.011533 CCCACACCACAATCTTTCCAATAAA 59.988 40.000 0.00 0.00 0.00 1.40
1406 1488 2.315176 CCCACACCACAATCTTTCCAA 58.685 47.619 0.00 0.00 0.00 3.53
1414 1496 2.118076 CTGGGCCCACACCACAAT 59.882 61.111 24.45 0.00 33.63 2.71
1476 1558 1.472376 CCAAAAAGTGGCTCCGCAAAA 60.472 47.619 2.02 0.00 41.72 2.44
1477 1559 0.103937 CCAAAAAGTGGCTCCGCAAA 59.896 50.000 2.02 0.00 41.72 3.68
1478 1560 1.739049 CCAAAAAGTGGCTCCGCAA 59.261 52.632 2.02 0.00 41.72 4.85
1491 1574 1.847737 ACTACACCACCAGGACCAAAA 59.152 47.619 0.00 0.00 38.69 2.44
1536 1620 5.233988 AGAAAAGCAGCTGAACAGTAGTAG 58.766 41.667 20.43 0.00 0.00 2.57
1537 1621 5.011125 AGAGAAAAGCAGCTGAACAGTAGTA 59.989 40.000 20.43 0.00 0.00 1.82
1538 1622 4.061596 GAGAAAAGCAGCTGAACAGTAGT 58.938 43.478 20.43 0.00 0.00 2.73
1782 1867 3.367395 GGAGAAGTGATGACGATGACACA 60.367 47.826 0.00 0.00 35.97 3.72
1784 1869 2.166459 GGGAGAAGTGATGACGATGACA 59.834 50.000 0.00 0.00 0.00 3.58
1821 1906 2.532250 TGCTCAGAGTGTAGGGATGA 57.468 50.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.