Multiple sequence alignment - TraesCS7A01G220200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G220200 chr7A 100.000 5982 0 0 1 5982 188656893 188662874 0.000000e+00 11047.0
1 TraesCS7A01G220200 chr7A 84.409 1270 188 5 3805 5067 171386410 171385144 0.000000e+00 1240.0
2 TraesCS7A01G220200 chr7A 85.959 584 74 8 2580 3158 171387491 171386911 8.520000e-173 617.0
3 TraesCS7A01G220200 chr7A 82.650 317 38 11 1081 1382 171389087 171388773 1.280000e-66 265.0
4 TraesCS7A01G220200 chr7A 88.281 128 12 3 5849 5975 57890841 57890966 3.730000e-32 150.0
5 TraesCS7A01G220200 chr7A 87.611 113 8 4 5850 5958 571693271 571693381 6.290000e-25 126.0
6 TraesCS7A01G220200 chr7D 96.859 4298 102 11 1694 5982 183029158 183024885 0.000000e+00 7158.0
7 TraesCS7A01G220200 chr7D 94.688 866 29 6 762 1617 183030485 183029627 0.000000e+00 1328.0
8 TraesCS7A01G220200 chr7D 84.591 1272 182 9 3805 5067 169388089 169386823 0.000000e+00 1251.0
9 TraesCS7A01G220200 chr7D 86.130 584 73 8 2580 3158 169389169 169388589 1.830000e-174 623.0
10 TraesCS7A01G220200 chr7D 80.501 359 44 15 1048 1382 169390807 169390451 9.950000e-63 252.0
11 TraesCS7A01G220200 chr7D 83.594 128 17 2 5851 5974 497043705 497043832 3.790000e-22 117.0
12 TraesCS7A01G220200 chr7D 95.588 68 3 0 1602 1669 183029613 183029546 6.340000e-20 110.0
13 TraesCS7A01G220200 chr7B 94.877 2479 98 10 3286 5752 151430986 151428525 0.000000e+00 3847.0
14 TraesCS7A01G220200 chr7B 96.614 1595 44 7 1704 3296 151432607 151431021 0.000000e+00 2638.0
15 TraesCS7A01G220200 chr7B 96.009 877 22 3 762 1629 151433717 151432845 0.000000e+00 1413.0
16 TraesCS7A01G220200 chr7B 84.157 1275 182 12 3805 5067 134560062 134558796 0.000000e+00 1218.0
17 TraesCS7A01G220200 chr7B 87.963 540 58 7 2584 3120 134561137 134560602 1.090000e-176 630.0
18 TraesCS7A01G220200 chr7B 81.935 310 43 9 1081 1379 134562785 134562478 3.580000e-62 250.0
19 TraesCS7A01G220200 chr7B 96.842 95 2 1 1626 1719 151432726 151432632 2.230000e-34 158.0
20 TraesCS7A01G220200 chr7B 97.436 39 1 0 1640 1678 151432650 151432612 3.870000e-07 67.6
21 TraesCS7A01G220200 chr4A 90.650 738 65 3 18 754 463875590 463876324 0.000000e+00 977.0
22 TraesCS7A01G220200 chr4A 87.407 135 11 5 3286 3414 514421684 514421818 3.730000e-32 150.0
23 TraesCS7A01G220200 chr4A 90.426 94 8 1 3203 3296 154501922 154501830 8.140000e-24 122.0
24 TraesCS7A01G220200 chr1D 90.214 746 64 6 18 758 495133118 495132377 0.000000e+00 965.0
25 TraesCS7A01G220200 chr1D 89.563 709 58 9 50 752 465933449 465934147 0.000000e+00 885.0
26 TraesCS7A01G220200 chr1D 87.500 768 83 10 1 761 25697834 25698595 0.000000e+00 874.0
27 TraesCS7A01G220200 chr1D 87.143 140 11 5 3286 3424 470770868 470770735 1.040000e-32 152.0
28 TraesCS7A01G220200 chr1B 87.958 764 75 12 1 757 642728544 642729297 0.000000e+00 885.0
29 TraesCS7A01G220200 chr5A 87.565 772 75 13 1 757 582380566 582381331 0.000000e+00 874.0
30 TraesCS7A01G220200 chr3D 88.193 703 74 6 1 697 18336608 18337307 0.000000e+00 830.0
31 TraesCS7A01G220200 chr3D 81.944 216 11 9 3225 3417 219567790 219567580 2.230000e-34 158.0
32 TraesCS7A01G220200 chr3D 84.956 113 13 3 5851 5959 561757490 561757602 1.760000e-20 111.0
33 TraesCS7A01G220200 chr2B 85.640 766 90 15 4 758 790232417 790231661 0.000000e+00 787.0
34 TraesCS7A01G220200 chr5D 85.417 768 88 11 4 754 351338076 351337316 0.000000e+00 776.0
35 TraesCS7A01G220200 chr5D 91.667 84 4 3 3216 3296 78407858 78407775 4.900000e-21 113.0
36 TraesCS7A01G220200 chr5D 85.217 115 10 5 5850 5959 420697336 420697448 1.760000e-20 111.0
37 TraesCS7A01G220200 chr6B 81.659 229 31 8 1156 1378 569820886 569821109 4.760000e-41 180.0
38 TraesCS7A01G220200 chr6A 83.684 190 25 3 1193 1378 522641419 522641232 2.220000e-39 174.0
39 TraesCS7A01G220200 chr3B 81.481 216 13 8 3225 3417 293741155 293740944 1.040000e-32 152.0
40 TraesCS7A01G220200 chrUn 85.816 141 16 2 3286 3423 135321503 135321364 4.830000e-31 147.0
41 TraesCS7A01G220200 chrUn 85.816 141 16 2 3286 3423 135354657 135354518 4.830000e-31 147.0
42 TraesCS7A01G220200 chrUn 85.816 141 16 2 3286 3423 239422109 239421970 4.830000e-31 147.0
43 TraesCS7A01G220200 chrUn 85.816 141 16 2 3286 3423 245489144 245489005 4.830000e-31 147.0
44 TraesCS7A01G220200 chrUn 85.816 141 16 2 3286 3423 367976814 367976953 4.830000e-31 147.0
45 TraesCS7A01G220200 chrUn 84.956 113 12 4 5851 5959 243362723 243362834 6.340000e-20 110.0
46 TraesCS7A01G220200 chr4B 90.385 104 6 2 5860 5959 567437745 567437848 3.760000e-27 134.0
47 TraesCS7A01G220200 chr4B 90.426 94 8 1 3203 3296 396716004 396716096 8.140000e-24 122.0
48 TraesCS7A01G220200 chr4D 90.426 94 8 1 3203 3296 319269585 319269677 8.140000e-24 122.0
49 TraesCS7A01G220200 chr2D 94.667 75 4 0 3222 3296 476855800 476855874 3.790000e-22 117.0
50 TraesCS7A01G220200 chr3A 85.455 110 12 2 5854 5959 726408201 726408310 1.760000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G220200 chr7A 188656893 188662874 5981 False 11047.000000 11047 100.000000 1 5982 1 chr7A.!!$F2 5981
1 TraesCS7A01G220200 chr7A 171385144 171389087 3943 True 707.333333 1240 84.339333 1081 5067 3 chr7A.!!$R1 3986
2 TraesCS7A01G220200 chr7D 183024885 183030485 5600 True 2865.333333 7158 95.711667 762 5982 3 chr7D.!!$R2 5220
3 TraesCS7A01G220200 chr7D 169386823 169390807 3984 True 708.666667 1251 83.740667 1048 5067 3 chr7D.!!$R1 4019
4 TraesCS7A01G220200 chr7B 151428525 151433717 5192 True 1624.720000 3847 96.355600 762 5752 5 chr7B.!!$R2 4990
5 TraesCS7A01G220200 chr7B 134558796 134562785 3989 True 699.333333 1218 84.685000 1081 5067 3 chr7B.!!$R1 3986
6 TraesCS7A01G220200 chr4A 463875590 463876324 734 False 977.000000 977 90.650000 18 754 1 chr4A.!!$F1 736
7 TraesCS7A01G220200 chr1D 495132377 495133118 741 True 965.000000 965 90.214000 18 758 1 chr1D.!!$R2 740
8 TraesCS7A01G220200 chr1D 465933449 465934147 698 False 885.000000 885 89.563000 50 752 1 chr1D.!!$F2 702
9 TraesCS7A01G220200 chr1D 25697834 25698595 761 False 874.000000 874 87.500000 1 761 1 chr1D.!!$F1 760
10 TraesCS7A01G220200 chr1B 642728544 642729297 753 False 885.000000 885 87.958000 1 757 1 chr1B.!!$F1 756
11 TraesCS7A01G220200 chr5A 582380566 582381331 765 False 874.000000 874 87.565000 1 757 1 chr5A.!!$F1 756
12 TraesCS7A01G220200 chr3D 18336608 18337307 699 False 830.000000 830 88.193000 1 697 1 chr3D.!!$F1 696
13 TraesCS7A01G220200 chr2B 790231661 790232417 756 True 787.000000 787 85.640000 4 758 1 chr2B.!!$R1 754
14 TraesCS7A01G220200 chr5D 351337316 351338076 760 True 776.000000 776 85.417000 4 754 1 chr5D.!!$R2 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 951 0.656259 TAATCTCTCGTGTCTCCGCG 59.344 55.000 0.00 0.0 45.74 6.46 F
1479 1576 2.162681 ACATTTCCCTTCCAAGCTTCG 58.837 47.619 0.00 0.0 0.00 3.79 F
2180 3132 4.067972 TCTTGCTCCGTACTTGAAGTTT 57.932 40.909 1.97 0.0 0.00 2.66 F
2741 3697 6.000219 AGAAGTGATTATTGTTGTGAGCACT 59.000 36.000 1.99 0.0 36.98 4.40 F
4567 6003 2.041701 GCCATGAATGCCACCCTTATT 58.958 47.619 0.00 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 2673 1.747709 CCAGAAGCCCAGAATCAGTG 58.252 55.000 0.0 0.0 0.00 3.66 R
3459 4463 3.062763 CACTTCAGAGTGTTGCTTCGAT 58.937 45.455 0.0 0.0 46.57 3.59 R
3667 4671 0.753848 CTTTCCACCCCACCAACGTT 60.754 55.000 0.0 0.0 0.00 3.99 R
4642 6078 3.347216 ACGGAATGAACTAGCAGCAAAT 58.653 40.909 0.0 0.0 0.00 2.32 R
5423 6862 0.179000 AATGCGGCTAACTCCTGGAG 59.821 55.000 22.0 22.0 35.52 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 205 7.676683 AATACCACTATGACTACACATCCTT 57.323 36.000 0.00 0.00 0.00 3.36
305 319 6.622833 ACGAATTTACGGAGGAAAAGAAAA 57.377 33.333 0.00 0.00 37.61 2.29
306 320 7.030075 ACGAATTTACGGAGGAAAAGAAAAA 57.970 32.000 0.00 0.00 37.61 1.94
344 359 4.173043 ACCTAGTAGGAGGGATTGGAGATT 59.827 45.833 23.50 0.00 41.36 2.40
353 368 3.117360 AGGGATTGGAGATTGAATCCACC 60.117 47.826 11.79 6.79 46.46 4.61
466 497 2.203549 GAAGAACTGCCTGGGAGGGG 62.204 65.000 19.89 0.00 35.37 4.79
498 529 1.873903 CGGCTTAAGTCACAGTGCAGT 60.874 52.381 8.01 0.00 0.00 4.40
500 531 1.532868 GCTTAAGTCACAGTGCAGTGG 59.467 52.381 24.91 13.95 39.93 4.00
501 532 2.838736 CTTAAGTCACAGTGCAGTGGT 58.161 47.619 24.91 8.48 39.93 4.16
511 542 0.721718 GTGCAGTGGTCAAGCGATAC 59.278 55.000 0.00 0.00 0.00 2.24
528 559 1.679187 TACGCGCTGCACATTACACG 61.679 55.000 5.73 0.00 0.00 4.49
626 658 0.973632 TGCAGCGTCTAAGGGAAAGA 59.026 50.000 0.00 0.00 0.00 2.52
734 767 5.881637 ATTTTGAATTGTTTTCGTCCACG 57.118 34.783 0.00 0.00 41.45 4.94
758 791 6.038356 GGATCAAATATGTGTTTTCTGCCTG 58.962 40.000 0.00 0.00 0.00 4.85
760 793 4.832266 TCAAATATGTGTTTTCTGCCTGGT 59.168 37.500 0.00 0.00 0.00 4.00
775 808 1.485838 CTGGTAGATGCTCGCGCTTG 61.486 60.000 5.56 0.00 36.97 4.01
840 873 3.738281 CGTCTGCGTAATGATTCCCTTCT 60.738 47.826 0.00 0.00 0.00 2.85
850 883 4.553330 TGATTCCCTTCTTTCGCTAAGT 57.447 40.909 0.00 0.00 35.28 2.24
867 900 1.557099 AGTTAGTGATCAGCCGTCCA 58.443 50.000 0.00 0.00 0.00 4.02
918 951 0.656259 TAATCTCTCGTGTCTCCGCG 59.344 55.000 0.00 0.00 45.74 6.46
945 978 4.228567 TGTCCGTCCTTGCACGCA 62.229 61.111 0.00 0.00 38.52 5.24
946 979 3.712881 GTCCGTCCTTGCACGCAC 61.713 66.667 0.00 0.00 38.52 5.34
947 980 3.923864 TCCGTCCTTGCACGCACT 61.924 61.111 0.00 0.00 38.52 4.40
948 981 3.414700 CCGTCCTTGCACGCACTC 61.415 66.667 0.00 0.00 38.52 3.51
1475 1572 3.573967 TCTTCAACATTTCCCTTCCAAGC 59.426 43.478 0.00 0.00 0.00 4.01
1479 1576 2.162681 ACATTTCCCTTCCAAGCTTCG 58.837 47.619 0.00 0.00 0.00 3.79
1678 2207 6.902771 TTTCTTTTTGAATAATCACCGGGA 57.097 33.333 6.32 0.00 34.61 5.14
1700 2592 4.152248 TGGATCCCCACCTGTCTG 57.848 61.111 9.90 0.00 37.58 3.51
1742 2673 5.657826 TCTCTGCTCAGATCCATATTAGC 57.342 43.478 0.00 0.00 36.76 3.09
1747 2678 4.590222 TGCTCAGATCCATATTAGCACTGA 59.410 41.667 0.00 0.00 35.20 3.41
2180 3132 4.067972 TCTTGCTCCGTACTTGAAGTTT 57.932 40.909 1.97 0.00 0.00 2.66
2520 3476 7.524717 ACAATTTGTATTTGTCTTACCTGCT 57.475 32.000 0.00 0.00 31.87 4.24
2741 3697 6.000219 AGAAGTGATTATTGTTGTGAGCACT 59.000 36.000 1.99 0.00 36.98 4.40
3337 4341 7.441890 TTCAGTTTTTCTTTTGGGTTTTTCC 57.558 32.000 0.00 0.00 0.00 3.13
3751 4756 9.190858 TCTCATGTTGAATTGTTTAAATTTCCG 57.809 29.630 0.00 0.00 0.00 4.30
4420 5856 3.817647 AGACAATGACAAAGTTGAGCTCC 59.182 43.478 12.15 0.00 0.00 4.70
4567 6003 2.041701 GCCATGAATGCCACCCTTATT 58.958 47.619 0.00 0.00 0.00 1.40
4594 6030 6.094048 CGGGAAGAGAAAATAAGAATGAAGCA 59.906 38.462 0.00 0.00 0.00 3.91
4678 6114 5.402398 TCATTCCGTAGCAGATATGATTCG 58.598 41.667 0.00 0.00 0.00 3.34
4922 6358 1.239968 GGAGGAGCCTGTTGCAGTTG 61.240 60.000 0.00 0.00 44.83 3.16
4939 6375 1.724148 TTGGCAAGGGTGATGGTGGA 61.724 55.000 0.00 0.00 0.00 4.02
5040 6476 2.711542 CCTTGTCGCCCACTTTTATCT 58.288 47.619 0.00 0.00 0.00 1.98
5075 6511 8.916062 TGTTTAGTTATTCTGGACCACGATATA 58.084 33.333 0.00 0.00 0.00 0.86
5167 6603 3.939592 GGGAAAGGTAGATGTGTTGTAGC 59.060 47.826 0.00 0.00 0.00 3.58
5183 6619 7.336679 TGTGTTGTAGCATGCTCATTATTAGTT 59.663 33.333 26.57 0.00 0.00 2.24
5380 6816 6.648310 ACGGCATGATGATTCTAATAGAACAG 59.352 38.462 4.66 0.00 37.00 3.16
5381 6817 6.091849 CGGCATGATGATTCTAATAGAACAGG 59.908 42.308 4.66 2.23 37.00 4.00
5423 6862 4.092968 CCGCTGTTGTAGATTAGGTTGTTC 59.907 45.833 0.00 0.00 0.00 3.18
5454 6893 2.406130 AGCCGCATTTGATTTGTGTTG 58.594 42.857 0.00 0.00 0.00 3.33
5474 6913 1.402325 GGTGCCGTTGGAATTGTAAGC 60.402 52.381 0.00 0.00 0.00 3.09
5531 6970 4.271049 GCAAGACTAATCACACGCATACAT 59.729 41.667 0.00 0.00 0.00 2.29
5681 7124 5.607939 ACCACGTGGATAATGTAGAATGA 57.392 39.130 40.21 0.00 38.94 2.57
5733 7178 1.072266 ACCACAATGCCTTGGAGGTA 58.928 50.000 15.84 0.00 40.77 3.08
5779 7225 6.729391 TTAATGCTTACAACTACGAATGCA 57.271 33.333 0.00 0.00 0.00 3.96
5796 7242 8.786937 ACGAATGCATGTGATATTTGATAAAC 57.213 30.769 0.00 0.00 0.00 2.01
5946 7396 0.667487 ACATGACACGGACGCAAGAG 60.667 55.000 0.00 0.00 43.62 2.85
5961 7411 0.036010 AAGAGGCGTGAACATGGAGG 60.036 55.000 0.00 0.00 0.00 4.30
5962 7412 0.904865 AGAGGCGTGAACATGGAGGA 60.905 55.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 205 3.156293 CCAAGATTGGGTGTTGTGATGA 58.844 45.455 3.52 0.00 44.70 2.92
258 271 6.179906 TGCAATTTTAGGGATTTGTCCAAA 57.820 33.333 0.00 0.00 34.46 3.28
305 319 7.015584 TCCTACTAGGTAAACTCCTTCGTTTTT 59.984 37.037 1.83 0.00 38.86 1.94
306 320 6.494835 TCCTACTAGGTAAACTCCTTCGTTTT 59.505 38.462 1.83 0.00 38.86 2.43
307 321 6.012745 TCCTACTAGGTAAACTCCTTCGTTT 58.987 40.000 1.83 0.00 38.86 3.60
312 326 4.547427 TCCCTCCTACTAGGTAAACTCCTT 59.453 45.833 1.83 0.00 38.86 3.36
344 359 4.584874 TGAAGATTTAAGCGGTGGATTCA 58.415 39.130 0.00 0.00 0.00 2.57
353 368 5.691305 CCTCTCAGATCTGAAGATTTAAGCG 59.309 44.000 25.09 10.37 39.39 4.68
511 542 2.275997 CGTGTAATGTGCAGCGCG 60.276 61.111 0.00 0.00 0.00 6.86
614 646 0.973632 TGCAGCGTCTTTCCCTTAGA 59.026 50.000 0.00 0.00 0.00 2.10
626 658 4.373116 CACCCTACCGTGCAGCGT 62.373 66.667 7.68 0.02 39.32 5.07
705 738 9.428363 GGACGAAAACAATTCAAAATTTAAACC 57.572 29.630 0.00 0.00 0.00 3.27
709 742 7.043325 CCGTGGACGAAAACAATTCAAAATTTA 60.043 33.333 0.00 0.00 43.02 1.40
734 767 6.038356 CAGGCAGAAAACACATATTTGATCC 58.962 40.000 0.00 0.00 0.00 3.36
840 873 4.181578 GGCTGATCACTAACTTAGCGAAA 58.818 43.478 0.00 0.00 32.22 3.46
850 883 1.412710 GGATGGACGGCTGATCACTAA 59.587 52.381 0.00 0.00 0.00 2.24
867 900 4.577096 TCTGGTTACCCTTGGATATGGAT 58.423 43.478 0.00 0.00 0.00 3.41
918 951 2.126031 GACGGACAGGTTCGGCTC 60.126 66.667 4.97 0.00 0.00 4.70
923 956 1.070786 TGCAAGGACGGACAGGTTC 59.929 57.895 0.00 0.00 0.00 3.62
928 961 4.228567 TGCGTGCAAGGACGGACA 62.229 61.111 15.58 3.53 39.81 4.02
945 978 3.911698 TGCAGTGCGTCCGTGAGT 61.912 61.111 11.20 0.00 0.00 3.41
946 979 3.406361 GTGCAGTGCGTCCGTGAG 61.406 66.667 11.20 0.00 0.00 3.51
947 980 4.961511 GGTGCAGTGCGTCCGTGA 62.962 66.667 11.20 0.00 0.00 4.35
1475 1572 6.346919 CCACTTCATAACAACAGAAGTCGAAG 60.347 42.308 4.24 0.00 46.47 3.79
1479 1576 5.179555 GGTCCACTTCATAACAACAGAAGTC 59.820 44.000 4.24 0.00 46.47 3.01
1742 2673 1.747709 CCAGAAGCCCAGAATCAGTG 58.252 55.000 0.00 0.00 0.00 3.66
1800 2731 9.736023 GATAACTAAATTAATGGTGCTTCCTTG 57.264 33.333 0.00 0.00 37.07 3.61
2238 3194 5.580691 CAGTGGTGCTTTCTAACGATCATAA 59.419 40.000 0.00 0.00 0.00 1.90
2351 3307 5.754782 TGGTCCATGTTAAGAACTGCATAT 58.245 37.500 0.00 0.00 0.00 1.78
2520 3476 7.012704 GCATTAAAAGCTCCATATCAGTGAGAA 59.987 37.037 0.00 0.00 0.00 2.87
2741 3697 5.843673 TTTGATGCTTACCAACAGTGAAA 57.156 34.783 0.00 0.00 0.00 2.69
3301 4301 5.927819 AGAAAAACTGAAATTTGCCATCCA 58.072 33.333 0.00 0.00 0.00 3.41
3459 4463 3.062763 CACTTCAGAGTGTTGCTTCGAT 58.937 45.455 0.00 0.00 46.57 3.59
3485 4489 2.962569 CGCTTCTCCCGTCAGTGA 59.037 61.111 0.00 0.00 0.00 3.41
3667 4671 0.753848 CTTTCCACCCCACCAACGTT 60.754 55.000 0.00 0.00 0.00 3.99
4420 5856 9.829507 AAGTGGACTTCAAATAGAATATCTGAG 57.170 33.333 0.00 0.00 35.25 3.35
4567 6003 5.496556 TCATTCTTATTTTCTCTTCCCGCA 58.503 37.500 0.00 0.00 0.00 5.69
4594 6030 3.737559 TCAGCAATGGTAGGTTCCAAT 57.262 42.857 0.00 0.00 41.09 3.16
4642 6078 3.347216 ACGGAATGAACTAGCAGCAAAT 58.653 40.909 0.00 0.00 0.00 2.32
4922 6358 0.324645 AATCCACCATCACCCTTGCC 60.325 55.000 0.00 0.00 0.00 4.52
5040 6476 7.741785 TCCAGAATAACTAAACAGAACTGGAA 58.258 34.615 0.00 0.00 45.06 3.53
5075 6511 0.671781 GCCAGCAATCGTCTCACTGT 60.672 55.000 0.00 0.00 0.00 3.55
5167 6603 8.877808 TCACTAGACAACTAATAATGAGCATG 57.122 34.615 0.00 0.00 0.00 4.06
5183 6619 4.403752 AGATAGCAGCAACATCACTAGACA 59.596 41.667 0.00 0.00 0.00 3.41
5355 6791 6.524734 TGTTCTATTAGAATCATCATGCCGT 58.475 36.000 9.28 0.00 36.50 5.68
5380 6816 5.522824 AGCGGTCGTTAGAAATTTATCTTCC 59.477 40.000 0.00 0.00 0.00 3.46
5381 6817 6.035758 ACAGCGGTCGTTAGAAATTTATCTTC 59.964 38.462 0.00 0.00 0.00 2.87
5423 6862 0.179000 AATGCGGCTAACTCCTGGAG 59.821 55.000 22.00 22.00 35.52 3.86
5454 6893 1.402325 GCTTACAATTCCAACGGCACC 60.402 52.381 0.00 0.00 0.00 5.01
5474 6913 6.964370 TCTACGGAAAATGCAAATATTTCACG 59.036 34.615 15.14 16.07 35.32 4.35
5531 6970 5.047847 CGTACAAGGAAACAAGAGAAGACA 58.952 41.667 0.00 0.00 0.00 3.41
5681 7124 1.615883 CGCATGGGTAGCAGATAGAGT 59.384 52.381 0.68 0.00 0.00 3.24
5779 7225 8.959548 TGCTGAACAGTTTATCAAATATCACAT 58.040 29.630 3.77 0.00 0.00 3.21
5796 7242 0.820226 TCGAGAGGGATGCTGAACAG 59.180 55.000 0.00 0.00 0.00 3.16
5843 7289 6.622183 CGTATTCGCGGAAAAATAAGTAGTTG 59.378 38.462 6.13 0.00 0.00 3.16
5903 7352 6.979238 GTGTGTACCACCTCTTATACTCAATC 59.021 42.308 3.79 0.00 38.18 2.67
5905 7354 5.776208 TGTGTGTACCACCTCTTATACTCAA 59.224 40.000 10.70 0.00 43.85 3.02
5912 7361 3.898741 TGTCATGTGTGTACCACCTCTTA 59.101 43.478 10.70 0.00 43.85 2.10
5946 7396 2.100631 CGTCCTCCATGTTCACGCC 61.101 63.158 0.00 0.00 0.00 5.68
5949 7399 2.457366 ACTTCGTCCTCCATGTTCAC 57.543 50.000 0.00 0.00 0.00 3.18
5952 7402 3.697045 CTCTCTACTTCGTCCTCCATGTT 59.303 47.826 0.00 0.00 0.00 2.71
5961 7411 1.062880 CTCACGCCTCTCTACTTCGTC 59.937 57.143 0.00 0.00 0.00 4.20
5962 7412 1.088306 CTCACGCCTCTCTACTTCGT 58.912 55.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.