Multiple sequence alignment - TraesCS7A01G219700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G219700 | chr7A | 100.000 | 4563 | 0 | 0 | 390 | 4952 | 187433856 | 187429294 | 0.000000e+00 | 8427.0 |
1 | TraesCS7A01G219700 | chr7A | 94.083 | 338 | 20 | 0 | 4615 | 4952 | 187390460 | 187390123 | 9.510000e-142 | 514.0 |
2 | TraesCS7A01G219700 | chr7A | 85.552 | 353 | 51 | 0 | 2435 | 2787 | 187431721 | 187431369 | 2.180000e-98 | 370.0 |
3 | TraesCS7A01G219700 | chr7A | 85.552 | 353 | 51 | 0 | 2525 | 2877 | 187431811 | 187431459 | 2.180000e-98 | 370.0 |
4 | TraesCS7A01G219700 | chr7A | 100.000 | 170 | 0 | 0 | 1 | 170 | 187434245 | 187434076 | 1.030000e-81 | 315.0 |
5 | TraesCS7A01G219700 | chr7A | 82.018 | 228 | 41 | 0 | 2435 | 2662 | 187431586 | 187431359 | 1.410000e-45 | 195.0 |
6 | TraesCS7A01G219700 | chr7D | 92.864 | 2018 | 114 | 14 | 2435 | 4441 | 183775958 | 183777956 | 0.000000e+00 | 2902.0 |
7 | TraesCS7A01G219700 | chr7D | 90.804 | 1381 | 117 | 8 | 1516 | 2887 | 183774989 | 183776368 | 0.000000e+00 | 1838.0 |
8 | TraesCS7A01G219700 | chr7D | 90.335 | 807 | 43 | 15 | 644 | 1422 | 183774074 | 183774873 | 0.000000e+00 | 1026.0 |
9 | TraesCS7A01G219700 | chr7D | 88.078 | 411 | 46 | 2 | 2480 | 2887 | 183775913 | 183776323 | 7.450000e-133 | 484.0 |
10 | TraesCS7A01G219700 | chr7D | 85.714 | 350 | 47 | 1 | 2435 | 2781 | 183776048 | 183776397 | 2.820000e-97 | 366.0 |
11 | TraesCS7A01G219700 | chr7D | 95.614 | 114 | 4 | 1 | 4502 | 4614 | 183778314 | 183778427 | 1.100000e-41 | 182.0 |
12 | TraesCS7A01G219700 | chr7D | 93.000 | 100 | 5 | 1 | 482 | 579 | 183752452 | 183752551 | 1.440000e-30 | 145.0 |
13 | TraesCS7A01G219700 | chr7D | 98.387 | 62 | 1 | 0 | 390 | 451 | 183752405 | 183752466 | 5.240000e-20 | 110.0 |
14 | TraesCS7A01G219700 | chr7B | 92.259 | 1731 | 94 | 21 | 638 | 2340 | 152491666 | 152493384 | 0.000000e+00 | 2418.0 |
15 | TraesCS7A01G219700 | chr7B | 93.898 | 1524 | 81 | 6 | 2480 | 3997 | 152493539 | 152495056 | 0.000000e+00 | 2289.0 |
16 | TraesCS7A01G219700 | chr7B | 84.720 | 517 | 73 | 4 | 2332 | 2842 | 152493436 | 152493952 | 3.420000e-141 | 512.0 |
17 | TraesCS7A01G219700 | chr7B | 85.552 | 353 | 45 | 3 | 2435 | 2781 | 152493584 | 152493936 | 1.010000e-96 | 364.0 |
18 | TraesCS7A01G219700 | chr7B | 82.500 | 320 | 50 | 4 | 2435 | 2748 | 152493629 | 152493948 | 4.880000e-70 | 276.0 |
19 | TraesCS7A01G219700 | chr7B | 81.609 | 261 | 40 | 6 | 2405 | 2662 | 152493697 | 152493952 | 5.020000e-50 | 209.0 |
20 | TraesCS7A01G219700 | chr7B | 90.683 | 161 | 7 | 5 | 390 | 550 | 152490893 | 152491045 | 1.810000e-49 | 207.0 |
21 | TraesCS7A01G219700 | chr4D | 93.491 | 338 | 21 | 1 | 4615 | 4952 | 482794653 | 482794989 | 7.400000e-138 | 501.0 |
22 | TraesCS7A01G219700 | chr2D | 93.433 | 335 | 22 | 0 | 4615 | 4949 | 582829174 | 582829508 | 9.570000e-137 | 497.0 |
23 | TraesCS7A01G219700 | chr2D | 93.175 | 337 | 22 | 1 | 4614 | 4949 | 582820696 | 582821032 | 1.240000e-135 | 494.0 |
24 | TraesCS7A01G219700 | chr2D | 93.155 | 336 | 22 | 1 | 4614 | 4949 | 582822482 | 582822816 | 4.450000e-135 | 492.0 |
25 | TraesCS7A01G219700 | chr2D | 92.582 | 337 | 24 | 1 | 4615 | 4950 | 585619825 | 585619489 | 2.680000e-132 | 483.0 |
26 | TraesCS7A01G219700 | chr2D | 84.375 | 160 | 22 | 2 | 4453 | 4612 | 574106933 | 574106777 | 2.390000e-33 | 154.0 |
27 | TraesCS7A01G219700 | chr2D | 93.103 | 58 | 3 | 1 | 1761 | 1818 | 593688609 | 593688553 | 3.180000e-12 | 84.2 |
28 | TraesCS7A01G219700 | chr4A | 92.941 | 340 | 24 | 0 | 4613 | 4952 | 478872461 | 478872800 | 3.440000e-136 | 496.0 |
29 | TraesCS7A01G219700 | chr4A | 97.059 | 34 | 1 | 0 | 4048 | 4081 | 603950928 | 603950895 | 1.930000e-04 | 58.4 |
30 | TraesCS7A01G219700 | chr6D | 92.899 | 338 | 23 | 1 | 4615 | 4952 | 293377661 | 293377997 | 1.600000e-134 | 490.0 |
31 | TraesCS7A01G219700 | chr6D | 98.485 | 66 | 1 | 0 | 4485 | 4550 | 16885335 | 16885400 | 3.130000e-22 | 117.0 |
32 | TraesCS7A01G219700 | chr3D | 92.899 | 338 | 20 | 1 | 4615 | 4952 | 280275498 | 280275165 | 5.760000e-134 | 488.0 |
33 | TraesCS7A01G219700 | chr3D | 95.556 | 45 | 2 | 0 | 1769 | 1813 | 175543163 | 175543119 | 6.880000e-09 | 73.1 |
34 | TraesCS7A01G219700 | chr2B | 92.090 | 177 | 12 | 2 | 4437 | 4612 | 43679535 | 43679360 | 1.060000e-61 | 248.0 |
35 | TraesCS7A01G219700 | chr2B | 92.157 | 51 | 3 | 1 | 1768 | 1818 | 720478111 | 720478062 | 2.470000e-08 | 71.3 |
36 | TraesCS7A01G219700 | chr2B | 93.333 | 45 | 3 | 0 | 4085 | 4129 | 337015411 | 337015455 | 3.200000e-07 | 67.6 |
37 | TraesCS7A01G219700 | chr2B | 93.333 | 45 | 3 | 0 | 4085 | 4129 | 337035993 | 337036037 | 3.200000e-07 | 67.6 |
38 | TraesCS7A01G219700 | chr5A | 86.538 | 156 | 16 | 5 | 4444 | 4595 | 482825234 | 482825388 | 3.070000e-37 | 167.0 |
39 | TraesCS7A01G219700 | chr5A | 95.833 | 48 | 1 | 1 | 1766 | 1812 | 605241817 | 605241770 | 5.320000e-10 | 76.8 |
40 | TraesCS7A01G219700 | chr5A | 97.436 | 39 | 1 | 0 | 4091 | 4129 | 498529324 | 498529286 | 3.200000e-07 | 67.6 |
41 | TraesCS7A01G219700 | chr5B | 83.019 | 159 | 22 | 3 | 4443 | 4597 | 458802336 | 458802493 | 6.680000e-29 | 139.0 |
42 | TraesCS7A01G219700 | chr5B | 83.871 | 93 | 14 | 1 | 4200 | 4291 | 282708042 | 282707950 | 2.460000e-13 | 87.9 |
43 | TraesCS7A01G219700 | chrUn | 80.240 | 167 | 26 | 4 | 5 | 169 | 39799081 | 39798920 | 8.710000e-23 | 119.0 |
44 | TraesCS7A01G219700 | chr3A | 97.872 | 47 | 1 | 0 | 1766 | 1812 | 112940946 | 112940992 | 1.140000e-11 | 82.4 |
45 | TraesCS7A01G219700 | chr6A | 97.727 | 44 | 1 | 0 | 1766 | 1809 | 99787478 | 99787435 | 5.320000e-10 | 76.8 |
46 | TraesCS7A01G219700 | chr6A | 97.436 | 39 | 0 | 1 | 4485 | 4523 | 17641456 | 17641493 | 1.150000e-06 | 65.8 |
47 | TraesCS7A01G219700 | chr1B | 93.878 | 49 | 3 | 0 | 4082 | 4130 | 407934406 | 407934454 | 1.910000e-09 | 75.0 |
48 | TraesCS7A01G219700 | chr1B | 92.453 | 53 | 3 | 1 | 1766 | 1817 | 549520515 | 549520567 | 1.910000e-09 | 75.0 |
49 | TraesCS7A01G219700 | chr1B | 93.478 | 46 | 3 | 0 | 4085 | 4130 | 561694162 | 561694117 | 8.890000e-08 | 69.4 |
50 | TraesCS7A01G219700 | chr6B | 93.478 | 46 | 3 | 0 | 4085 | 4130 | 610451272 | 610451317 | 8.890000e-08 | 69.4 |
51 | TraesCS7A01G219700 | chr1D | 97.436 | 39 | 1 | 0 | 4091 | 4129 | 210519494 | 210519456 | 3.200000e-07 | 67.6 |
52 | TraesCS7A01G219700 | chr1D | 93.333 | 45 | 3 | 0 | 4085 | 4129 | 492898202 | 492898246 | 3.200000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G219700 | chr7A | 187429294 | 187434245 | 4951 | True | 1935.400000 | 8427 | 90.624400 | 1 | 4952 | 5 | chr7A.!!$R2 | 4951 |
1 | TraesCS7A01G219700 | chr7D | 183774074 | 183778427 | 4353 | False | 1133.000000 | 2902 | 90.568167 | 644 | 4614 | 6 | chr7D.!!$F2 | 3970 |
2 | TraesCS7A01G219700 | chr7B | 152490893 | 152495056 | 4163 | False | 896.428571 | 2418 | 87.317286 | 390 | 3997 | 7 | chr7B.!!$F1 | 3607 |
3 | TraesCS7A01G219700 | chr2D | 582820696 | 582822816 | 2120 | False | 493.000000 | 494 | 93.165000 | 4614 | 4949 | 2 | chr2D.!!$F2 | 335 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
67 | 68 | 0.032117 | GGGAAATGGAGGGAAAGGGG | 60.032 | 60.0 | 0.00 | 0.0 | 0.00 | 4.79 | F |
139 | 140 | 0.094730 | CCTTTTCGCTAAAGCCGACG | 59.905 | 55.0 | 0.00 | 0.0 | 41.60 | 5.12 | F |
1209 | 1782 | 0.094558 | GTCGTGTGTGTGTGTGTGTG | 59.905 | 55.0 | 0.00 | 0.0 | 0.00 | 3.82 | F |
1355 | 1928 | 0.404040 | TGCTTCCCGGAACTCCAATT | 59.596 | 50.0 | 0.73 | 0.0 | 35.14 | 2.32 | F |
1697 | 2358 | 0.515564 | GCATACCGCAAACACGAGTT | 59.484 | 50.0 | 0.00 | 0.0 | 41.79 | 3.01 | F |
1964 | 2630 | 0.674895 | AATTCAGTGCGTGCCTCTCC | 60.675 | 55.0 | 0.00 | 0.0 | 0.00 | 3.71 | F |
3811 | 4591 | 0.037326 | TCCTCACCAAGCTAAGCGTG | 60.037 | 55.0 | 0.00 | 0.0 | 37.74 | 5.34 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1106 | 1673 | 1.197949 | CAGAAGAAGCGAGACGAGTGA | 59.802 | 52.381 | 0.00 | 0.0 | 0.00 | 3.41 | R |
1756 | 2418 | 1.859302 | TTTTTGACACTGGGTTGCCT | 58.141 | 45.000 | 0.00 | 0.0 | 0.00 | 4.75 | R |
3151 | 3931 | 1.130561 | CGGAAGAAGAAAACATCCGCC | 59.869 | 52.381 | 0.00 | 0.0 | 45.41 | 6.13 | R |
3205 | 3985 | 4.090588 | TTGGTCGGCGGGATGGTC | 62.091 | 66.667 | 7.21 | 0.0 | 0.00 | 4.02 | R |
3679 | 4459 | 2.034879 | CAACGCCTCCATTGTCGCT | 61.035 | 57.895 | 0.00 | 0.0 | 0.00 | 4.93 | R |
3927 | 4709 | 0.178068 | ACACCCTCGATACATGCACC | 59.822 | 55.000 | 0.00 | 0.0 | 0.00 | 5.01 | R |
4765 | 7636 | 1.267261 | GATCGGTCGGATCGTGAAGAT | 59.733 | 52.381 | 10.85 | 0.0 | 42.02 | 2.40 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 3.154473 | TCCGGGGAGAGAATGGCG | 61.154 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
18 | 19 | 4.241555 | CCGGGGAGAGAATGGCGG | 62.242 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
19 | 20 | 4.241555 | CGGGGAGAGAATGGCGGG | 62.242 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
20 | 21 | 2.768344 | GGGGAGAGAATGGCGGGA | 60.768 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
21 | 22 | 2.375345 | GGGGAGAGAATGGCGGGAA | 61.375 | 63.158 | 0.00 | 0.00 | 0.00 | 3.97 |
22 | 23 | 1.147153 | GGGAGAGAATGGCGGGAAG | 59.853 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
23 | 24 | 1.147153 | GGAGAGAATGGCGGGAAGG | 59.853 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
24 | 25 | 1.147153 | GAGAGAATGGCGGGAAGGG | 59.853 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
25 | 26 | 2.517166 | GAGAATGGCGGGAAGGGC | 60.517 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
26 | 27 | 4.489771 | AGAATGGCGGGAAGGGCG | 62.490 | 66.667 | 0.00 | 0.00 | 34.76 | 6.13 |
35 | 36 | 3.798511 | GGAAGGGCGGGGGAGAAG | 61.799 | 72.222 | 0.00 | 0.00 | 0.00 | 2.85 |
36 | 37 | 3.798511 | GAAGGGCGGGGGAGAAGG | 61.799 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
45 | 46 | 4.097361 | GGGAGAAGGGGGCGACAC | 62.097 | 72.222 | 0.00 | 0.00 | 0.00 | 3.67 |
46 | 47 | 3.003763 | GGAGAAGGGGGCGACACT | 61.004 | 66.667 | 0.00 | 0.00 | 0.00 | 3.55 |
47 | 48 | 1.684734 | GGAGAAGGGGGCGACACTA | 60.685 | 63.158 | 0.00 | 0.00 | 0.00 | 2.74 |
48 | 49 | 1.677637 | GGAGAAGGGGGCGACACTAG | 61.678 | 65.000 | 0.00 | 0.00 | 0.00 | 2.57 |
49 | 50 | 1.677637 | GAGAAGGGGGCGACACTAGG | 61.678 | 65.000 | 0.00 | 0.00 | 0.00 | 3.02 |
50 | 51 | 2.687566 | AAGGGGGCGACACTAGGG | 60.688 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
51 | 52 | 3.248248 | AAGGGGGCGACACTAGGGA | 62.248 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
52 | 53 | 2.686106 | GGGGGCGACACTAGGGAA | 60.686 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
53 | 54 | 2.295602 | GGGGGCGACACTAGGGAAA | 61.296 | 63.158 | 0.00 | 0.00 | 0.00 | 3.13 |
54 | 55 | 1.632965 | GGGGGCGACACTAGGGAAAT | 61.633 | 60.000 | 0.00 | 0.00 | 0.00 | 2.17 |
55 | 56 | 0.463833 | GGGGCGACACTAGGGAAATG | 60.464 | 60.000 | 0.00 | 0.00 | 0.00 | 2.32 |
56 | 57 | 0.463833 | GGGCGACACTAGGGAAATGG | 60.464 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
57 | 58 | 0.539986 | GGCGACACTAGGGAAATGGA | 59.460 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
58 | 59 | 1.473434 | GGCGACACTAGGGAAATGGAG | 60.473 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
59 | 60 | 1.473434 | GCGACACTAGGGAAATGGAGG | 60.473 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
60 | 61 | 1.139058 | CGACACTAGGGAAATGGAGGG | 59.861 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
61 | 62 | 2.478292 | GACACTAGGGAAATGGAGGGA | 58.522 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
62 | 63 | 2.844348 | GACACTAGGGAAATGGAGGGAA | 59.156 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
63 | 64 | 3.265489 | ACACTAGGGAAATGGAGGGAAA | 58.735 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
64 | 65 | 3.267031 | ACACTAGGGAAATGGAGGGAAAG | 59.733 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
65 | 66 | 2.853077 | ACTAGGGAAATGGAGGGAAAGG | 59.147 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
66 | 67 | 1.010795 | AGGGAAATGGAGGGAAAGGG | 58.989 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
67 | 68 | 0.032117 | GGGAAATGGAGGGAAAGGGG | 60.032 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
68 | 69 | 0.032117 | GGAAATGGAGGGAAAGGGGG | 60.032 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
69 | 70 | 1.007607 | GAAATGGAGGGAAAGGGGGA | 58.992 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
70 | 71 | 1.361197 | GAAATGGAGGGAAAGGGGGAA | 59.639 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
71 | 72 | 1.010795 | AATGGAGGGAAAGGGGGAAG | 58.989 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
72 | 73 | 0.123266 | ATGGAGGGAAAGGGGGAAGA | 59.877 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
73 | 74 | 0.103608 | TGGAGGGAAAGGGGGAAGAA | 60.104 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
74 | 75 | 1.081481 | GGAGGGAAAGGGGGAAGAAA | 58.919 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
75 | 76 | 1.431633 | GGAGGGAAAGGGGGAAGAAAA | 59.568 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
76 | 77 | 2.526432 | GAGGGAAAGGGGGAAGAAAAC | 58.474 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
77 | 78 | 1.203013 | AGGGAAAGGGGGAAGAAAACG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.60 |
78 | 79 | 1.254026 | GGAAAGGGGGAAGAAAACGG | 58.746 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
79 | 80 | 0.601558 | GAAAGGGGGAAGAAAACGGC | 59.398 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
80 | 81 | 1.176619 | AAAGGGGGAAGAAAACGGCG | 61.177 | 55.000 | 4.80 | 4.80 | 0.00 | 6.46 |
81 | 82 | 3.060000 | GGGGGAAGAAAACGGCGG | 61.060 | 66.667 | 13.24 | 0.00 | 0.00 | 6.13 |
82 | 83 | 3.060000 | GGGGAAGAAAACGGCGGG | 61.060 | 66.667 | 13.24 | 0.00 | 0.00 | 6.13 |
83 | 84 | 2.032987 | GGGAAGAAAACGGCGGGA | 59.967 | 61.111 | 13.24 | 0.00 | 0.00 | 5.14 |
84 | 85 | 1.601477 | GGGAAGAAAACGGCGGGAA | 60.601 | 57.895 | 13.24 | 0.00 | 0.00 | 3.97 |
85 | 86 | 0.963856 | GGGAAGAAAACGGCGGGAAT | 60.964 | 55.000 | 13.24 | 0.00 | 0.00 | 3.01 |
86 | 87 | 0.885879 | GGAAGAAAACGGCGGGAATT | 59.114 | 50.000 | 13.24 | 0.00 | 0.00 | 2.17 |
87 | 88 | 1.271379 | GGAAGAAAACGGCGGGAATTT | 59.729 | 47.619 | 13.24 | 6.90 | 0.00 | 1.82 |
88 | 89 | 2.324860 | GAAGAAAACGGCGGGAATTTG | 58.675 | 47.619 | 13.24 | 0.00 | 0.00 | 2.32 |
89 | 90 | 0.601057 | AGAAAACGGCGGGAATTTGG | 59.399 | 50.000 | 13.24 | 0.00 | 0.00 | 3.28 |
90 | 91 | 1.005512 | AAAACGGCGGGAATTTGGC | 60.006 | 52.632 | 13.24 | 0.00 | 0.00 | 4.52 |
91 | 92 | 2.443260 | AAAACGGCGGGAATTTGGCC | 62.443 | 55.000 | 13.24 | 0.00 | 43.42 | 5.36 |
95 | 96 | 4.128388 | GCGGGAATTTGGCCGGTG | 62.128 | 66.667 | 1.90 | 0.00 | 0.00 | 4.94 |
96 | 97 | 2.675075 | CGGGAATTTGGCCGGTGT | 60.675 | 61.111 | 1.90 | 0.00 | 0.00 | 4.16 |
97 | 98 | 2.696759 | CGGGAATTTGGCCGGTGTC | 61.697 | 63.158 | 1.90 | 0.00 | 0.00 | 3.67 |
98 | 99 | 2.696759 | GGGAATTTGGCCGGTGTCG | 61.697 | 63.158 | 1.90 | 0.00 | 0.00 | 4.35 |
99 | 100 | 2.178273 | GAATTTGGCCGGTGTCGC | 59.822 | 61.111 | 1.90 | 0.00 | 34.56 | 5.19 |
100 | 101 | 3.336715 | GAATTTGGCCGGTGTCGCC | 62.337 | 63.158 | 1.90 | 0.00 | 34.66 | 5.54 |
135 | 136 | 4.765611 | CGCCTTTTCGCTAAAGCC | 57.234 | 55.556 | 0.00 | 0.00 | 41.60 | 4.35 |
136 | 137 | 1.226018 | CGCCTTTTCGCTAAAGCCG | 60.226 | 57.895 | 0.00 | 2.61 | 41.60 | 5.52 |
137 | 138 | 1.632046 | CGCCTTTTCGCTAAAGCCGA | 61.632 | 55.000 | 7.21 | 0.00 | 44.86 | 5.54 |
138 | 139 | 0.179197 | GCCTTTTCGCTAAAGCCGAC | 60.179 | 55.000 | 0.00 | 0.00 | 41.60 | 4.79 |
139 | 140 | 0.094730 | CCTTTTCGCTAAAGCCGACG | 59.905 | 55.000 | 0.00 | 0.00 | 41.60 | 5.12 |
140 | 141 | 0.518559 | CTTTTCGCTAAAGCCGACGC | 60.519 | 55.000 | 0.00 | 0.00 | 37.06 | 5.19 |
141 | 142 | 1.903783 | TTTTCGCTAAAGCCGACGCC | 61.904 | 55.000 | 0.00 | 0.00 | 37.91 | 5.68 |
142 | 143 | 4.807039 | TCGCTAAAGCCGACGCCC | 62.807 | 66.667 | 0.00 | 0.00 | 37.91 | 6.13 |
144 | 145 | 4.770874 | GCTAAAGCCGACGCCCCA | 62.771 | 66.667 | 0.00 | 0.00 | 34.57 | 4.96 |
145 | 146 | 2.511600 | CTAAAGCCGACGCCCCAG | 60.512 | 66.667 | 0.00 | 0.00 | 34.57 | 4.45 |
146 | 147 | 4.090588 | TAAAGCCGACGCCCCAGG | 62.091 | 66.667 | 0.00 | 0.00 | 34.57 | 4.45 |
416 | 417 | 7.499563 | TCAGCTACCAGAGTAGTACTATTCTTG | 59.500 | 40.741 | 21.68 | 20.30 | 46.60 | 3.02 |
422 | 423 | 8.852135 | ACCAGAGTAGTACTATTCTTGATAAGC | 58.148 | 37.037 | 24.57 | 2.95 | 30.96 | 3.09 |
446 | 447 | 7.039784 | AGCAATAATTTCTGCTAACCACTCAAA | 60.040 | 33.333 | 11.19 | 0.00 | 46.92 | 2.69 |
449 | 450 | 5.695851 | ATTTCTGCTAACCACTCAAACAG | 57.304 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
461 | 462 | 5.046910 | CACTCAAACAGTGTTCTTGTTGT | 57.953 | 39.130 | 9.40 | 6.21 | 46.81 | 3.32 |
462 | 463 | 5.460646 | CACTCAAACAGTGTTCTTGTTGTT | 58.539 | 37.500 | 9.40 | 0.00 | 46.81 | 2.83 |
463 | 464 | 5.343058 | CACTCAAACAGTGTTCTTGTTGTTG | 59.657 | 40.000 | 9.40 | 1.30 | 46.81 | 3.33 |
464 | 465 | 5.009610 | ACTCAAACAGTGTTCTTGTTGTTGT | 59.990 | 36.000 | 9.40 | 4.95 | 34.28 | 3.32 |
465 | 466 | 5.837437 | TCAAACAGTGTTCTTGTTGTTGTT | 58.163 | 33.333 | 9.40 | 0.00 | 34.28 | 2.83 |
466 | 467 | 5.689514 | TCAAACAGTGTTCTTGTTGTTGTTG | 59.310 | 36.000 | 9.40 | 0.00 | 34.28 | 3.33 |
554 | 831 | 8.174757 | TGCCTCAGTATCACCCTATTAGTATTA | 58.825 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
594 | 871 | 5.488203 | AGGATTGCTGGAGATGCTCTTATAT | 59.512 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
595 | 872 | 6.671340 | AGGATTGCTGGAGATGCTCTTATATA | 59.329 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
596 | 873 | 7.347748 | AGGATTGCTGGAGATGCTCTTATATAT | 59.652 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
597 | 874 | 8.646004 | GGATTGCTGGAGATGCTCTTATATATA | 58.354 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
753 | 1300 | 2.616842 | GTCCGTAATATGGCACTTTGGG | 59.383 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
845 | 1392 | 5.574055 | TGCTCTTTCTTAATAACCACGTACG | 59.426 | 40.000 | 15.01 | 15.01 | 0.00 | 3.67 |
859 | 1407 | 2.096980 | CACGTACGACAATAGGAGAGCA | 59.903 | 50.000 | 24.41 | 0.00 | 0.00 | 4.26 |
910 | 1463 | 1.666209 | ATACGTTGGCCCTTGCATGC | 61.666 | 55.000 | 11.82 | 11.82 | 40.13 | 4.06 |
937 | 1490 | 7.882179 | TCATGAATCATGGATTTAGCAAGATG | 58.118 | 34.615 | 21.58 | 0.00 | 41.66 | 2.90 |
1097 | 1664 | 4.541482 | GCGCGCACACCATGGATG | 62.541 | 66.667 | 29.10 | 17.07 | 0.00 | 3.51 |
1106 | 1673 | 2.237143 | CACACCATGGATGTACTCCTGT | 59.763 | 50.000 | 21.47 | 5.83 | 45.21 | 4.00 |
1152 | 1721 | 1.368641 | GCATACGGCACACTCATCAA | 58.631 | 50.000 | 0.00 | 0.00 | 43.97 | 2.57 |
1208 | 1781 | 1.348538 | CGTCGTGTGTGTGTGTGTGT | 61.349 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1209 | 1782 | 0.094558 | GTCGTGTGTGTGTGTGTGTG | 59.905 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1219 | 1792 | 2.668945 | TGTGTGTGTGTGACTTGTAACG | 59.331 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1223 | 1796 | 2.166870 | TGTGTGTGACTTGTAACGGTCT | 59.833 | 45.455 | 0.00 | 0.00 | 34.01 | 3.85 |
1226 | 1799 | 4.093850 | GTGTGTGACTTGTAACGGTCTTTT | 59.906 | 41.667 | 0.00 | 0.00 | 34.01 | 2.27 |
1270 | 1843 | 5.064692 | CAGATTACTGGAGGAGGCAGTCC | 62.065 | 56.522 | 0.00 | 0.00 | 41.87 | 3.85 |
1355 | 1928 | 0.404040 | TGCTTCCCGGAACTCCAATT | 59.596 | 50.000 | 0.73 | 0.00 | 35.14 | 2.32 |
1472 | 2133 | 5.011635 | TGGTCTGAAGCTGAGTGTGTAAATA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1476 | 2137 | 7.959651 | GTCTGAAGCTGAGTGTGTAAATATTTG | 59.040 | 37.037 | 11.05 | 0.00 | 0.00 | 2.32 |
1479 | 2140 | 8.629158 | TGAAGCTGAGTGTGTAAATATTTGTTT | 58.371 | 29.630 | 11.05 | 0.00 | 0.00 | 2.83 |
1480 | 2141 | 9.118236 | GAAGCTGAGTGTGTAAATATTTGTTTC | 57.882 | 33.333 | 11.05 | 1.51 | 0.00 | 2.78 |
1481 | 2142 | 7.593825 | AGCTGAGTGTGTAAATATTTGTTTCC | 58.406 | 34.615 | 11.05 | 0.00 | 0.00 | 3.13 |
1697 | 2358 | 0.515564 | GCATACCGCAAACACGAGTT | 59.484 | 50.000 | 0.00 | 0.00 | 41.79 | 3.01 |
1756 | 2418 | 8.774546 | ATGTTCAGAGGTCTAATATTCAGAGA | 57.225 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
1764 | 2426 | 5.301555 | GTCTAATATTCAGAGAGGCAACCC | 58.698 | 45.833 | 0.00 | 0.00 | 37.17 | 4.11 |
1824 | 2486 | 8.905850 | GGGAGTAGTATTTAGCATAGTCTATCC | 58.094 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
1964 | 2630 | 0.674895 | AATTCAGTGCGTGCCTCTCC | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1972 | 2638 | 1.725557 | GCGTGCCTCTCCAGACGATA | 61.726 | 60.000 | 0.00 | 0.00 | 33.64 | 2.92 |
1977 | 2643 | 3.006323 | GTGCCTCTCCAGACGATATTGAT | 59.994 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
2007 | 2673 | 7.415229 | AGTTTGTCAAAGGACTACGAAAAATC | 58.585 | 34.615 | 0.00 | 0.00 | 44.61 | 2.17 |
2088 | 2754 | 4.155462 | ACTGCATCACAAGCTGAACATAAG | 59.845 | 41.667 | 0.00 | 0.00 | 35.29 | 1.73 |
2099 | 2765 | 6.374417 | AGCTGAACATAAGTTAAAGGAGGA | 57.626 | 37.500 | 0.00 | 0.00 | 38.30 | 3.71 |
2182 | 2848 | 2.417719 | CAAAAGTTGGAGAGAGACCGG | 58.582 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
2196 | 2862 | 1.145803 | GACCGGAAAAAGTCTCGGTG | 58.854 | 55.000 | 9.46 | 0.00 | 46.71 | 4.94 |
2279 | 2948 | 5.721480 | TGAAGGAGGTTTCTCTGTCATATGA | 59.279 | 40.000 | 0.00 | 0.00 | 39.86 | 2.15 |
2291 | 2960 | 7.623630 | TCTCTGTCATATGAATCAAAAGGTGA | 58.376 | 34.615 | 7.07 | 0.00 | 41.67 | 4.02 |
2332 | 3001 | 6.942005 | AGTATCTGTGTCACATGGATCAAAAA | 59.058 | 34.615 | 6.03 | 0.00 | 0.00 | 1.94 |
2454 | 3183 | 5.304101 | AGGTGAAGATGATCCACATAGAGTC | 59.696 | 44.000 | 4.62 | 0.00 | 39.56 | 3.36 |
2466 | 3195 | 6.573434 | TCCACATAGAGTCACAATGTCATAC | 58.427 | 40.000 | 0.00 | 0.00 | 31.60 | 2.39 |
2511 | 3240 | 7.801716 | TCCCAATAAAGCTACAATGACATAC | 57.198 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2513 | 3242 | 7.831690 | TCCCAATAAAGCTACAATGACATACAA | 59.168 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2515 | 3244 | 8.131100 | CCAATAAAGCTACAATGACATACAAGG | 58.869 | 37.037 | 0.00 | 0.00 | 0.00 | 3.61 |
2608 | 3382 | 3.450817 | AGTCACAATGTCATATGGGTCGA | 59.549 | 43.478 | 2.13 | 0.00 | 0.00 | 4.20 |
2698 | 3475 | 4.127171 | AGTTACAATGTCATATGGGTCGC | 58.873 | 43.478 | 2.13 | 0.00 | 0.00 | 5.19 |
2795 | 3575 | 1.400494 | GTCATACGGGTCAAACCATGC | 59.600 | 52.381 | 0.00 | 0.00 | 41.02 | 4.06 |
2946 | 3726 | 6.650807 | CACACATAGAAGGTAAAGAGAAAGCA | 59.349 | 38.462 | 0.00 | 0.00 | 0.00 | 3.91 |
2961 | 3741 | 7.195839 | AGAGAAAGCACAACTTATGAAGAAC | 57.804 | 36.000 | 0.00 | 0.00 | 37.75 | 3.01 |
3032 | 3812 | 8.442632 | TGATAAATATCCAGAAAACAGAGCTG | 57.557 | 34.615 | 0.00 | 0.00 | 31.71 | 4.24 |
3096 | 3876 | 2.973224 | CACTATTGCACGTGTTTCAAGC | 59.027 | 45.455 | 18.38 | 0.47 | 0.00 | 4.01 |
3138 | 3918 | 4.449131 | CATGTTCACTCTCATAGCCACAT | 58.551 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
3151 | 3931 | 3.996150 | AGCCACATGAACAAAAGACAG | 57.004 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
3205 | 3985 | 4.559502 | GGGTCAATGATCACCCCG | 57.440 | 61.111 | 7.74 | 0.00 | 46.13 | 5.73 |
3276 | 4056 | 1.765314 | CGACTCCCTTCCATTCTCCAT | 59.235 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
3278 | 4058 | 1.765314 | ACTCCCTTCCATTCTCCATCG | 59.235 | 52.381 | 0.00 | 0.00 | 0.00 | 3.84 |
3695 | 4475 | 2.434884 | CAGCGACAATGGAGGCGT | 60.435 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
3811 | 4591 | 0.037326 | TCCTCACCAAGCTAAGCGTG | 60.037 | 55.000 | 0.00 | 0.00 | 37.74 | 5.34 |
3921 | 4703 | 1.063912 | GCGCATTCATGAAATGGACGA | 59.936 | 47.619 | 13.09 | 0.00 | 46.73 | 4.20 |
3927 | 4709 | 6.369005 | GCATTCATGAAATGGACGATTCTAG | 58.631 | 40.000 | 13.09 | 0.00 | 46.73 | 2.43 |
3943 | 4725 | 2.239400 | TCTAGGTGCATGTATCGAGGG | 58.761 | 52.381 | 4.47 | 0.00 | 0.00 | 4.30 |
3967 | 4749 | 7.308951 | GGGTGTACTAAATAAATGTGTGCTTGT | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
4005 | 4792 | 5.234752 | GTTGATGTTAATTTTGGGGTCACC | 58.765 | 41.667 | 0.00 | 0.00 | 40.81 | 4.02 |
4016 | 4803 | 3.905493 | TGGGGTCACCTTCCATTTAAA | 57.095 | 42.857 | 0.00 | 0.00 | 41.11 | 1.52 |
4019 | 4806 | 3.762288 | GGGGTCACCTTCCATTTAAAGAC | 59.238 | 47.826 | 0.00 | 0.00 | 36.80 | 3.01 |
4063 | 4850 | 7.136885 | TCTTAAGTTATACTTCCTCCATCCCA | 58.863 | 38.462 | 1.63 | 0.00 | 39.51 | 4.37 |
4074 | 4861 | 5.269554 | TCCTCCATCCCAAATTACTTGTT | 57.730 | 39.130 | 0.00 | 0.00 | 32.65 | 2.83 |
4082 | 4869 | 6.418057 | TCCCAAATTACTTGTTGCAGAATT | 57.582 | 33.333 | 0.00 | 0.00 | 32.65 | 2.17 |
4094 | 4881 | 9.851686 | ACTTGTTGCAGAATTAAGATATATCCA | 57.148 | 29.630 | 9.18 | 0.00 | 0.00 | 3.41 |
4116 | 4903 | 7.264221 | TCCATTTTCATGACAAATAATTCCGG | 58.736 | 34.615 | 12.49 | 0.00 | 31.07 | 5.14 |
4121 | 4908 | 3.613494 | TGACAAATAATTCCGGACGGA | 57.387 | 42.857 | 1.83 | 9.76 | 43.52 | 4.69 |
4122 | 4909 | 3.527533 | TGACAAATAATTCCGGACGGAG | 58.472 | 45.455 | 13.64 | 3.15 | 46.06 | 4.63 |
4123 | 4910 | 2.870411 | GACAAATAATTCCGGACGGAGG | 59.130 | 50.000 | 13.64 | 0.00 | 46.06 | 4.30 |
4124 | 4911 | 2.218603 | CAAATAATTCCGGACGGAGGG | 58.781 | 52.381 | 13.64 | 0.00 | 46.06 | 4.30 |
4125 | 4912 | 1.797320 | AATAATTCCGGACGGAGGGA | 58.203 | 50.000 | 13.64 | 0.00 | 46.06 | 4.20 |
4126 | 4913 | 1.339097 | ATAATTCCGGACGGAGGGAG | 58.661 | 55.000 | 13.64 | 0.00 | 46.06 | 4.30 |
4127 | 4914 | 0.032813 | TAATTCCGGACGGAGGGAGT | 60.033 | 55.000 | 13.64 | 1.45 | 46.06 | 3.85 |
4128 | 4915 | 0.032813 | AATTCCGGACGGAGGGAGTA | 60.033 | 55.000 | 13.64 | 0.00 | 46.06 | 2.59 |
4129 | 4916 | 0.187851 | ATTCCGGACGGAGGGAGTAT | 59.812 | 55.000 | 13.64 | 0.61 | 46.06 | 2.12 |
4130 | 4917 | 0.466922 | TTCCGGACGGAGGGAGTATC | 60.467 | 60.000 | 13.64 | 0.00 | 46.06 | 2.24 |
4131 | 4918 | 1.152819 | CCGGACGGAGGGAGTATCA | 60.153 | 63.158 | 4.40 | 0.00 | 34.77 | 2.15 |
4132 | 4919 | 1.453762 | CCGGACGGAGGGAGTATCAC | 61.454 | 65.000 | 4.40 | 0.00 | 40.51 | 3.06 |
4139 | 4926 | 5.254901 | GACGGAGGGAGTATCACACTATAT | 58.745 | 45.833 | 0.00 | 0.00 | 45.06 | 0.86 |
4140 | 4927 | 5.010933 | ACGGAGGGAGTATCACACTATATG | 58.989 | 45.833 | 0.00 | 0.00 | 45.06 | 1.78 |
4228 | 5016 | 7.739825 | TCTTATTGCCTATCTAAATGTGCTCT | 58.260 | 34.615 | 0.00 | 0.00 | 0.00 | 4.09 |
4251 | 5039 | 4.631377 | TCATTTAATGTGCTTCGTGAGAGG | 59.369 | 41.667 | 4.77 | 0.00 | 43.69 | 3.69 |
4305 | 5093 | 7.754924 | GCTAAGAGCTATGATATGACAACTCTC | 59.245 | 40.741 | 0.00 | 0.00 | 38.45 | 3.20 |
4360 | 5148 | 7.989826 | AGATTTTTGTATAGGTGTCATGCTTC | 58.010 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
4376 | 5164 | 4.768130 | TGCTTCAGATATAGTCCTACGC | 57.232 | 45.455 | 0.00 | 0.00 | 0.00 | 4.42 |
4397 | 5185 | 3.668447 | CGAAGCATTGATACTGCCCTAT | 58.332 | 45.455 | 0.00 | 0.00 | 40.56 | 2.57 |
4415 | 5203 | 7.619050 | TGCCCTATGCTCATTTTAAAATTTCA | 58.381 | 30.769 | 10.77 | 9.23 | 42.00 | 2.69 |
4442 | 5230 | 9.892130 | AAATTAGTGGTTATCTTCTTAGTGGAG | 57.108 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
4443 | 5231 | 5.941555 | AGTGGTTATCTTCTTAGTGGAGG | 57.058 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
4444 | 5232 | 5.590818 | AGTGGTTATCTTCTTAGTGGAGGA | 58.409 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
4445 | 5233 | 5.659079 | AGTGGTTATCTTCTTAGTGGAGGAG | 59.341 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4446 | 5234 | 5.422650 | GTGGTTATCTTCTTAGTGGAGGAGT | 59.577 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4447 | 5235 | 6.023603 | TGGTTATCTTCTTAGTGGAGGAGTT | 58.976 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4448 | 5236 | 6.500751 | TGGTTATCTTCTTAGTGGAGGAGTTT | 59.499 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
4449 | 5237 | 7.676893 | TGGTTATCTTCTTAGTGGAGGAGTTTA | 59.323 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
4450 | 5238 | 8.198778 | GGTTATCTTCTTAGTGGAGGAGTTTAG | 58.801 | 40.741 | 0.00 | 0.00 | 0.00 | 1.85 |
4451 | 5239 | 8.751242 | GTTATCTTCTTAGTGGAGGAGTTTAGT | 58.249 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
4452 | 5240 | 6.591750 | TCTTCTTAGTGGAGGAGTTTAGTG | 57.408 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
4453 | 5241 | 6.075984 | TCTTCTTAGTGGAGGAGTTTAGTGT | 58.924 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4454 | 5242 | 7.236529 | TCTTCTTAGTGGAGGAGTTTAGTGTA | 58.763 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
4455 | 5243 | 7.393796 | TCTTCTTAGTGGAGGAGTTTAGTGTAG | 59.606 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
4456 | 5244 | 6.787170 | TCTTAGTGGAGGAGTTTAGTGTAGA | 58.213 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4457 | 5245 | 6.658391 | TCTTAGTGGAGGAGTTTAGTGTAGAC | 59.342 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
4458 | 5246 | 4.087907 | AGTGGAGGAGTTTAGTGTAGACC | 58.912 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
4459 | 5247 | 3.830755 | GTGGAGGAGTTTAGTGTAGACCA | 59.169 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
4460 | 5248 | 4.282703 | GTGGAGGAGTTTAGTGTAGACCAA | 59.717 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
4461 | 5249 | 4.282703 | TGGAGGAGTTTAGTGTAGACCAAC | 59.717 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
4462 | 5250 | 4.282703 | GGAGGAGTTTAGTGTAGACCAACA | 59.717 | 45.833 | 5.72 | 0.00 | 0.00 | 3.33 |
4463 | 5251 | 5.470047 | AGGAGTTTAGTGTAGACCAACAG | 57.530 | 43.478 | 5.72 | 0.00 | 0.00 | 3.16 |
4464 | 5252 | 4.283722 | AGGAGTTTAGTGTAGACCAACAGG | 59.716 | 45.833 | 5.72 | 0.00 | 0.00 | 4.00 |
4465 | 5253 | 4.562963 | GGAGTTTAGTGTAGACCAACAGGG | 60.563 | 50.000 | 5.72 | 0.00 | 44.81 | 4.45 |
4466 | 5254 | 3.326880 | AGTTTAGTGTAGACCAACAGGGG | 59.673 | 47.826 | 5.72 | 0.00 | 42.91 | 4.79 |
4472 | 5260 | 3.070576 | GACCAACAGGGGCCATGC | 61.071 | 66.667 | 19.71 | 0.00 | 39.68 | 4.06 |
4497 | 5285 | 4.758773 | CCCCCTAATTTGTGCATTCATT | 57.241 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
4498 | 5286 | 4.444536 | CCCCCTAATTTGTGCATTCATTG | 58.555 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
4499 | 5287 | 4.161942 | CCCCCTAATTTGTGCATTCATTGA | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
4500 | 5288 | 5.338219 | CCCCCTAATTTGTGCATTCATTGAA | 60.338 | 40.000 | 0.75 | 0.75 | 0.00 | 2.69 |
4588 | 5674 | 1.770324 | CCCCCTTCAAGTCTTGGCT | 59.230 | 57.895 | 12.66 | 0.00 | 0.00 | 4.75 |
4590 | 5676 | 0.322906 | CCCCTTCAAGTCTTGGCTCC | 60.323 | 60.000 | 12.66 | 0.00 | 0.00 | 4.70 |
4606 | 5692 | 1.877443 | GCTCCCTCTTACGTTTTGCAA | 59.123 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
4666 | 5753 | 5.675684 | TCCTACACACATGCAAGATCTAA | 57.324 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
4685 | 5772 | 3.788333 | AACATGGTGATGCATAGCAAC | 57.212 | 42.857 | 0.00 | 0.00 | 43.62 | 4.17 |
4693 | 5780 | 1.069204 | GATGCATAGCAACGAGAGGGA | 59.931 | 52.381 | 0.00 | 0.00 | 43.62 | 4.20 |
4702 | 5789 | 2.678324 | CAACGAGAGGGAAGAGTGTTC | 58.322 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
4724 | 5811 | 1.021390 | CACGTACCCTCGTAGACCGT | 61.021 | 60.000 | 0.00 | 0.00 | 42.27 | 4.83 |
4765 | 7636 | 2.227149 | ACGCAGTTGATGTAGTCGTACA | 59.773 | 45.455 | 0.00 | 0.00 | 37.78 | 2.90 |
4811 | 7682 | 0.599558 | CCGAAAGTACGACACCTCCA | 59.400 | 55.000 | 0.00 | 0.00 | 35.09 | 3.86 |
4867 | 7738 | 2.777832 | ACTCTTGATCCAGTTGAGGC | 57.222 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4880 | 7751 | 1.258445 | TTGAGGCCGAGGGAGAGTTC | 61.258 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4889 | 7760 | 0.616111 | AGGGAGAGTTCCGTCAGCAT | 60.616 | 55.000 | 0.00 | 0.00 | 45.04 | 3.79 |
4903 | 7774 | 2.885644 | GCATGACGGCGTGACGAT | 60.886 | 61.111 | 21.19 | 0.25 | 37.61 | 3.73 |
4950 | 7821 | 1.546834 | CTTCGCCTAAGCACTACGAC | 58.453 | 55.000 | 0.00 | 0.00 | 39.83 | 4.34 |
4951 | 7822 | 0.179181 | TTCGCCTAAGCACTACGACG | 60.179 | 55.000 | 0.00 | 0.00 | 39.83 | 5.12 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.154473 | CGCCATTCTCTCCCCGGA | 61.154 | 66.667 | 0.73 | 0.00 | 0.00 | 5.14 |
1 | 2 | 4.241555 | CCGCCATTCTCTCCCCGG | 62.242 | 72.222 | 0.00 | 0.00 | 0.00 | 5.73 |
2 | 3 | 4.241555 | CCCGCCATTCTCTCCCCG | 62.242 | 72.222 | 0.00 | 0.00 | 0.00 | 5.73 |
3 | 4 | 2.330924 | CTTCCCGCCATTCTCTCCCC | 62.331 | 65.000 | 0.00 | 0.00 | 0.00 | 4.81 |
4 | 5 | 1.147153 | CTTCCCGCCATTCTCTCCC | 59.853 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
5 | 6 | 1.147153 | CCTTCCCGCCATTCTCTCC | 59.853 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
6 | 7 | 1.147153 | CCCTTCCCGCCATTCTCTC | 59.853 | 63.158 | 0.00 | 0.00 | 0.00 | 3.20 |
7 | 8 | 3.049080 | GCCCTTCCCGCCATTCTCT | 62.049 | 63.158 | 0.00 | 0.00 | 0.00 | 3.10 |
8 | 9 | 2.517166 | GCCCTTCCCGCCATTCTC | 60.517 | 66.667 | 0.00 | 0.00 | 0.00 | 2.87 |
9 | 10 | 4.489771 | CGCCCTTCCCGCCATTCT | 62.490 | 66.667 | 0.00 | 0.00 | 0.00 | 2.40 |
18 | 19 | 3.798511 | CTTCTCCCCCGCCCTTCC | 61.799 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
19 | 20 | 3.798511 | CCTTCTCCCCCGCCCTTC | 61.799 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
28 | 29 | 4.097361 | GTGTCGCCCCCTTCTCCC | 62.097 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
29 | 30 | 1.677637 | CTAGTGTCGCCCCCTTCTCC | 61.678 | 65.000 | 0.00 | 0.00 | 0.00 | 3.71 |
30 | 31 | 1.677637 | CCTAGTGTCGCCCCCTTCTC | 61.678 | 65.000 | 0.00 | 0.00 | 0.00 | 2.87 |
31 | 32 | 1.686110 | CCTAGTGTCGCCCCCTTCT | 60.686 | 63.158 | 0.00 | 0.00 | 0.00 | 2.85 |
32 | 33 | 2.732619 | CCCTAGTGTCGCCCCCTTC | 61.733 | 68.421 | 0.00 | 0.00 | 0.00 | 3.46 |
33 | 34 | 2.687566 | CCCTAGTGTCGCCCCCTT | 60.688 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
34 | 35 | 2.758852 | TTTCCCTAGTGTCGCCCCCT | 62.759 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
35 | 36 | 1.632965 | ATTTCCCTAGTGTCGCCCCC | 61.633 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
36 | 37 | 0.463833 | CATTTCCCTAGTGTCGCCCC | 60.464 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
37 | 38 | 0.463833 | CCATTTCCCTAGTGTCGCCC | 60.464 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
38 | 39 | 0.539986 | TCCATTTCCCTAGTGTCGCC | 59.460 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
39 | 40 | 1.473434 | CCTCCATTTCCCTAGTGTCGC | 60.473 | 57.143 | 0.00 | 0.00 | 0.00 | 5.19 |
40 | 41 | 1.139058 | CCCTCCATTTCCCTAGTGTCG | 59.861 | 57.143 | 0.00 | 0.00 | 0.00 | 4.35 |
41 | 42 | 2.478292 | TCCCTCCATTTCCCTAGTGTC | 58.522 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
42 | 43 | 2.661176 | TCCCTCCATTTCCCTAGTGT | 57.339 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
43 | 44 | 3.372025 | CCTTTCCCTCCATTTCCCTAGTG | 60.372 | 52.174 | 0.00 | 0.00 | 0.00 | 2.74 |
44 | 45 | 2.853077 | CCTTTCCCTCCATTTCCCTAGT | 59.147 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
45 | 46 | 2.175715 | CCCTTTCCCTCCATTTCCCTAG | 59.824 | 54.545 | 0.00 | 0.00 | 0.00 | 3.02 |
46 | 47 | 2.214201 | CCCTTTCCCTCCATTTCCCTA | 58.786 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
47 | 48 | 1.010795 | CCCTTTCCCTCCATTTCCCT | 58.989 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
48 | 49 | 0.032117 | CCCCTTTCCCTCCATTTCCC | 60.032 | 60.000 | 0.00 | 0.00 | 0.00 | 3.97 |
49 | 50 | 0.032117 | CCCCCTTTCCCTCCATTTCC | 60.032 | 60.000 | 0.00 | 0.00 | 0.00 | 3.13 |
50 | 51 | 1.007607 | TCCCCCTTTCCCTCCATTTC | 58.992 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
51 | 52 | 1.362584 | CTTCCCCCTTTCCCTCCATTT | 59.637 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
52 | 53 | 1.010795 | CTTCCCCCTTTCCCTCCATT | 58.989 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
53 | 54 | 0.123266 | TCTTCCCCCTTTCCCTCCAT | 59.877 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
54 | 55 | 0.103608 | TTCTTCCCCCTTTCCCTCCA | 60.104 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
55 | 56 | 1.081481 | TTTCTTCCCCCTTTCCCTCC | 58.919 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
56 | 57 | 2.526432 | GTTTTCTTCCCCCTTTCCCTC | 58.474 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
57 | 58 | 1.203013 | CGTTTTCTTCCCCCTTTCCCT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
58 | 59 | 1.254026 | CGTTTTCTTCCCCCTTTCCC | 58.746 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
59 | 60 | 1.254026 | CCGTTTTCTTCCCCCTTTCC | 58.746 | 55.000 | 0.00 | 0.00 | 0.00 | 3.13 |
60 | 61 | 0.601558 | GCCGTTTTCTTCCCCCTTTC | 59.398 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
61 | 62 | 1.176619 | CGCCGTTTTCTTCCCCCTTT | 61.177 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
62 | 63 | 1.602605 | CGCCGTTTTCTTCCCCCTT | 60.603 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
63 | 64 | 2.033602 | CGCCGTTTTCTTCCCCCT | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 4.79 |
64 | 65 | 3.060000 | CCGCCGTTTTCTTCCCCC | 61.060 | 66.667 | 0.00 | 0.00 | 0.00 | 5.40 |
65 | 66 | 3.060000 | CCCGCCGTTTTCTTCCCC | 61.060 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
66 | 67 | 0.963856 | ATTCCCGCCGTTTTCTTCCC | 60.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
67 | 68 | 0.885879 | AATTCCCGCCGTTTTCTTCC | 59.114 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
68 | 69 | 2.324860 | CAAATTCCCGCCGTTTTCTTC | 58.675 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
69 | 70 | 1.000394 | CCAAATTCCCGCCGTTTTCTT | 60.000 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
70 | 71 | 0.601057 | CCAAATTCCCGCCGTTTTCT | 59.399 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
71 | 72 | 1.011968 | GCCAAATTCCCGCCGTTTTC | 61.012 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
72 | 73 | 1.005512 | GCCAAATTCCCGCCGTTTT | 60.006 | 52.632 | 0.00 | 0.00 | 0.00 | 2.43 |
73 | 74 | 2.654289 | GCCAAATTCCCGCCGTTT | 59.346 | 55.556 | 0.00 | 0.00 | 0.00 | 3.60 |
74 | 75 | 3.378602 | GGCCAAATTCCCGCCGTT | 61.379 | 61.111 | 0.00 | 0.00 | 31.92 | 4.44 |
78 | 79 | 4.128388 | CACCGGCCAAATTCCCGC | 62.128 | 66.667 | 0.00 | 0.00 | 43.05 | 6.13 |
79 | 80 | 2.675075 | ACACCGGCCAAATTCCCG | 60.675 | 61.111 | 0.00 | 5.46 | 43.97 | 5.14 |
80 | 81 | 2.696759 | CGACACCGGCCAAATTCCC | 61.697 | 63.158 | 0.00 | 0.00 | 0.00 | 3.97 |
81 | 82 | 2.874751 | CGACACCGGCCAAATTCC | 59.125 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
82 | 83 | 2.178273 | GCGACACCGGCCAAATTC | 59.822 | 61.111 | 0.00 | 0.00 | 36.06 | 2.17 |
120 | 121 | 0.094730 | CGTCGGCTTTAGCGAAAAGG | 59.905 | 55.000 | 14.08 | 2.12 | 44.13 | 3.11 |
121 | 122 | 0.518559 | GCGTCGGCTTTAGCGAAAAG | 60.519 | 55.000 | 9.48 | 9.48 | 46.29 | 2.27 |
122 | 123 | 1.494189 | GCGTCGGCTTTAGCGAAAA | 59.506 | 52.632 | 0.00 | 0.00 | 43.26 | 2.29 |
123 | 124 | 2.385091 | GGCGTCGGCTTTAGCGAAA | 61.385 | 57.895 | 12.17 | 0.00 | 43.26 | 3.46 |
124 | 125 | 2.812178 | GGCGTCGGCTTTAGCGAA | 60.812 | 61.111 | 12.17 | 0.00 | 43.26 | 4.70 |
125 | 126 | 4.807039 | GGGCGTCGGCTTTAGCGA | 62.807 | 66.667 | 19.00 | 0.00 | 43.26 | 4.93 |
127 | 128 | 4.770874 | TGGGGCGTCGGCTTTAGC | 62.771 | 66.667 | 19.00 | 0.90 | 39.81 | 3.09 |
128 | 129 | 2.511600 | CTGGGGCGTCGGCTTTAG | 60.512 | 66.667 | 19.00 | 10.37 | 39.81 | 1.85 |
129 | 130 | 4.090588 | CCTGGGGCGTCGGCTTTA | 62.091 | 66.667 | 19.00 | 4.55 | 39.81 | 1.85 |
422 | 423 | 8.081633 | TGTTTGAGTGGTTAGCAGAAATTATTG | 58.918 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
446 | 447 | 4.846779 | ACAACAACAACAAGAACACTGT | 57.153 | 36.364 | 0.00 | 0.00 | 0.00 | 3.55 |
554 | 831 | 4.042187 | GCAATCCTCCAGTATACCATTCCT | 59.958 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
567 | 844 | 0.182061 | GCATCTCCAGCAATCCTCCA | 59.818 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
568 | 845 | 0.473326 | AGCATCTCCAGCAATCCTCC | 59.527 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
594 | 871 | 9.749490 | GGCGTTTTACGTACGTATAGTATTATA | 57.251 | 33.333 | 27.30 | 7.70 | 44.73 | 0.98 |
595 | 872 | 8.286800 | TGGCGTTTTACGTACGTATAGTATTAT | 58.713 | 33.333 | 27.30 | 0.82 | 44.73 | 1.28 |
596 | 873 | 7.584847 | GTGGCGTTTTACGTACGTATAGTATTA | 59.415 | 37.037 | 27.30 | 9.17 | 44.73 | 0.98 |
597 | 874 | 6.413818 | GTGGCGTTTTACGTACGTATAGTATT | 59.586 | 38.462 | 27.30 | 2.36 | 44.73 | 1.89 |
598 | 875 | 5.907391 | GTGGCGTTTTACGTACGTATAGTAT | 59.093 | 40.000 | 27.30 | 3.14 | 44.73 | 2.12 |
599 | 876 | 5.260140 | GTGGCGTTTTACGTACGTATAGTA | 58.740 | 41.667 | 27.30 | 11.02 | 44.73 | 1.82 |
600 | 877 | 4.095610 | GTGGCGTTTTACGTACGTATAGT | 58.904 | 43.478 | 27.30 | 4.69 | 44.73 | 2.12 |
601 | 878 | 3.482110 | GGTGGCGTTTTACGTACGTATAG | 59.518 | 47.826 | 27.30 | 18.61 | 44.73 | 1.31 |
602 | 879 | 3.430931 | GGTGGCGTTTTACGTACGTATA | 58.569 | 45.455 | 27.30 | 20.25 | 44.73 | 1.47 |
603 | 880 | 2.258755 | GGTGGCGTTTTACGTACGTAT | 58.741 | 47.619 | 27.30 | 6.27 | 44.73 | 3.06 |
622 | 899 | 5.937975 | ATTCCTTACATGGTTGAATTGGG | 57.062 | 39.130 | 0.00 | 0.00 | 0.00 | 4.12 |
845 | 1392 | 2.973945 | ACCGTTTGCTCTCCTATTGTC | 58.026 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
859 | 1407 | 1.213094 | CGCTGACGACTCAACCGTTT | 61.213 | 55.000 | 0.00 | 0.00 | 43.93 | 3.60 |
910 | 1463 | 6.489022 | TCTTGCTAAATCCATGATTCATGAGG | 59.511 | 38.462 | 24.93 | 11.66 | 43.81 | 3.86 |
937 | 1490 | 8.484799 | CAACAATCATACATATGCATTTCAAGC | 58.515 | 33.333 | 3.54 | 0.00 | 33.76 | 4.01 |
956 | 1509 | 6.038603 | TGGCATAGATTTACTGCTCAACAATC | 59.961 | 38.462 | 0.00 | 0.00 | 36.18 | 2.67 |
1026 | 1589 | 2.880268 | TGAGTGATGGTGTGAAGCAAAG | 59.120 | 45.455 | 0.00 | 0.00 | 0.00 | 2.77 |
1097 | 1664 | 1.394227 | CGAGACGAGTGACAGGAGTAC | 59.606 | 57.143 | 0.00 | 0.00 | 0.00 | 2.73 |
1106 | 1673 | 1.197949 | CAGAAGAAGCGAGACGAGTGA | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1152 | 1721 | 6.611381 | CAATTCGTGTGTGGACAGAAATATT | 58.389 | 36.000 | 0.00 | 0.00 | 30.74 | 1.28 |
1208 | 1781 | 5.883503 | AAACAAAAGACCGTTACAAGTCA | 57.116 | 34.783 | 5.52 | 0.00 | 35.38 | 3.41 |
1209 | 1782 | 8.739461 | CAAATAAACAAAAGACCGTTACAAGTC | 58.261 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1219 | 1792 | 7.010923 | TGCATCACAACAAATAAACAAAAGACC | 59.989 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1223 | 1796 | 6.037610 | GGGTGCATCACAACAAATAAACAAAA | 59.962 | 34.615 | 0.00 | 0.00 | 37.92 | 2.44 |
1226 | 1799 | 4.100035 | TGGGTGCATCACAACAAATAAACA | 59.900 | 37.500 | 0.00 | 0.00 | 37.92 | 2.83 |
1661 | 2322 | 6.321717 | CGGTATGCATAGACACAAACAAATT | 58.678 | 36.000 | 6.67 | 0.00 | 0.00 | 1.82 |
1756 | 2418 | 1.859302 | TTTTTGACACTGGGTTGCCT | 58.141 | 45.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1854 | 2519 | 3.119531 | TCAAATTGAACGGGTGATGCATC | 60.120 | 43.478 | 20.14 | 20.14 | 0.00 | 3.91 |
1964 | 2630 | 7.276438 | TGACAAACTTGAGATCAATATCGTCTG | 59.724 | 37.037 | 0.00 | 0.00 | 37.19 | 3.51 |
1972 | 2638 | 6.774656 | AGTCCTTTGACAAACTTGAGATCAAT | 59.225 | 34.615 | 0.00 | 0.00 | 44.33 | 2.57 |
1977 | 2643 | 5.047847 | CGTAGTCCTTTGACAAACTTGAGA | 58.952 | 41.667 | 0.00 | 0.00 | 44.33 | 3.27 |
2007 | 2673 | 8.888579 | ACTTGAGTTTCTTATAATATGGTCCG | 57.111 | 34.615 | 0.00 | 0.00 | 0.00 | 4.79 |
2088 | 2754 | 4.629092 | ACGACAAAGAGTCCTCCTTTAAC | 58.371 | 43.478 | 0.00 | 0.00 | 44.66 | 2.01 |
2099 | 2765 | 6.464222 | TCTTTTGATCCATACGACAAAGAGT | 58.536 | 36.000 | 0.00 | 0.00 | 34.54 | 3.24 |
2182 | 2848 | 4.392138 | CCCATAAGACACCGAGACTTTTTC | 59.608 | 45.833 | 0.00 | 0.00 | 34.20 | 2.29 |
2196 | 2862 | 1.209621 | TGGCACCTACCCCATAAGAC | 58.790 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2304 | 2973 | 5.423290 | TGATCCATGTGACACAGATACTTCT | 59.577 | 40.000 | 14.66 | 0.00 | 0.00 | 2.85 |
2332 | 3001 | 4.973168 | TCTTGTGCCACAAAGTCTCTATT | 58.027 | 39.130 | 11.99 | 0.00 | 37.69 | 1.73 |
2454 | 3183 | 2.989909 | TCTGGCCTGTATGACATTGTG | 58.010 | 47.619 | 3.32 | 0.00 | 0.00 | 3.33 |
2466 | 3195 | 3.063510 | TCATCTTCTTGTTCTGGCCTG | 57.936 | 47.619 | 3.32 | 2.92 | 0.00 | 4.85 |
2511 | 3240 | 4.096081 | GGATCATCTTCTTGTTCTGCCTTG | 59.904 | 45.833 | 0.00 | 0.00 | 0.00 | 3.61 |
2513 | 3242 | 3.371380 | GGGATCATCTTCTTGTTCTGCCT | 60.371 | 47.826 | 0.00 | 0.00 | 0.00 | 4.75 |
2515 | 3244 | 3.614092 | TGGGATCATCTTCTTGTTCTGC | 58.386 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
2608 | 3382 | 8.655935 | ACTTTATTGGGATCATCTTCTTGTTT | 57.344 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
2698 | 3475 | 6.976925 | GCTTTATTGGGATCATCTTCTTGTTG | 59.023 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
2946 | 3726 | 5.689383 | AATGCACGTTCTTCATAAGTTGT | 57.311 | 34.783 | 0.00 | 0.00 | 0.00 | 3.32 |
2961 | 3741 | 6.949578 | ACATGGAAATTCTAAAAATGCACG | 57.050 | 33.333 | 0.00 | 0.00 | 0.00 | 5.34 |
3071 | 3851 | 4.123506 | TGAAACACGTGCAATAGTGAGAA | 58.876 | 39.130 | 17.22 | 5.04 | 40.56 | 2.87 |
3072 | 3852 | 3.723260 | TGAAACACGTGCAATAGTGAGA | 58.277 | 40.909 | 17.22 | 3.45 | 40.56 | 3.27 |
3073 | 3853 | 4.457810 | CTTGAAACACGTGCAATAGTGAG | 58.542 | 43.478 | 17.22 | 7.15 | 40.56 | 3.51 |
3074 | 3854 | 3.303725 | GCTTGAAACACGTGCAATAGTGA | 60.304 | 43.478 | 17.22 | 0.67 | 40.56 | 3.41 |
3075 | 3855 | 2.973224 | GCTTGAAACACGTGCAATAGTG | 59.027 | 45.455 | 17.22 | 14.30 | 43.46 | 2.74 |
3084 | 3864 | 1.745232 | TCCTGTTGCTTGAAACACGT | 58.255 | 45.000 | 0.00 | 0.00 | 35.16 | 4.49 |
3096 | 3876 | 1.600636 | TGGCTCGCCTTTCCTGTTG | 60.601 | 57.895 | 9.65 | 0.00 | 36.94 | 3.33 |
3138 | 3918 | 1.879380 | CATCCGCCTGTCTTTTGTTCA | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
3151 | 3931 | 1.130561 | CGGAAGAAGAAAACATCCGCC | 59.869 | 52.381 | 0.00 | 0.00 | 45.41 | 6.13 |
3205 | 3985 | 4.090588 | TTGGTCGGCGGGATGGTC | 62.091 | 66.667 | 7.21 | 0.00 | 0.00 | 4.02 |
3511 | 4291 | 2.203877 | TTGTACCTCCCCCGCAGT | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
3679 | 4459 | 2.034879 | CAACGCCTCCATTGTCGCT | 61.035 | 57.895 | 0.00 | 0.00 | 0.00 | 4.93 |
3883 | 4663 | 0.179073 | GCCGCATCTCACACATACCT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
3886 | 4668 | 1.882625 | GCGCCGCATCTCACACATA | 60.883 | 57.895 | 3.15 | 0.00 | 0.00 | 2.29 |
3921 | 4703 | 3.259374 | CCCTCGATACATGCACCTAGAAT | 59.741 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
3927 | 4709 | 0.178068 | ACACCCTCGATACATGCACC | 59.822 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3943 | 4725 | 8.901748 | CAACAAGCACACATTTATTTAGTACAC | 58.098 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
4005 | 4792 | 7.025963 | GCATTGAGAGTGTCTTTAAATGGAAG | 58.974 | 38.462 | 0.00 | 0.00 | 29.96 | 3.46 |
4052 | 4839 | 4.946160 | ACAAGTAATTTGGGATGGAGGA | 57.054 | 40.909 | 0.00 | 0.00 | 41.25 | 3.71 |
4093 | 4880 | 7.044117 | CGTCCGGAATTATTTGTCATGAAAATG | 60.044 | 37.037 | 5.23 | 7.22 | 0.00 | 2.32 |
4094 | 4881 | 6.972328 | CGTCCGGAATTATTTGTCATGAAAAT | 59.028 | 34.615 | 5.23 | 15.45 | 0.00 | 1.82 |
4099 | 4886 | 3.874543 | TCCGTCCGGAATTATTTGTCATG | 59.125 | 43.478 | 5.23 | 0.00 | 42.05 | 3.07 |
4100 | 4887 | 4.127171 | CTCCGTCCGGAATTATTTGTCAT | 58.873 | 43.478 | 5.23 | 0.00 | 44.66 | 3.06 |
4101 | 4888 | 3.527533 | CTCCGTCCGGAATTATTTGTCA | 58.472 | 45.455 | 5.23 | 0.00 | 44.66 | 3.58 |
4116 | 4903 | 1.765230 | AGTGTGATACTCCCTCCGTC | 58.235 | 55.000 | 0.00 | 0.00 | 33.17 | 4.79 |
4228 | 5016 | 4.631377 | CCTCTCACGAAGCACATTAAATGA | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
4334 | 5122 | 7.944729 | AGCATGACACCTATACAAAAATCTT | 57.055 | 32.000 | 0.00 | 0.00 | 0.00 | 2.40 |
4360 | 5148 | 3.188667 | TGCTTCGCGTAGGACTATATCTG | 59.811 | 47.826 | 14.82 | 0.00 | 0.00 | 2.90 |
4376 | 5164 | 1.959042 | AGGGCAGTATCAATGCTTCG | 58.041 | 50.000 | 0.00 | 0.00 | 43.35 | 3.79 |
4422 | 5210 | 5.422650 | ACTCCTCCACTAAGAAGATAACCAC | 59.577 | 44.000 | 0.00 | 0.00 | 0.00 | 4.16 |
4434 | 5222 | 5.713861 | GGTCTACACTAAACTCCTCCACTAA | 59.286 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4441 | 5229 | 4.283722 | CCTGTTGGTCTACACTAAACTCCT | 59.716 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
4442 | 5230 | 4.562963 | CCCTGTTGGTCTACACTAAACTCC | 60.563 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4443 | 5231 | 4.562963 | CCCCTGTTGGTCTACACTAAACTC | 60.563 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4444 | 5232 | 3.326880 | CCCCTGTTGGTCTACACTAAACT | 59.673 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
4445 | 5233 | 3.671716 | CCCCTGTTGGTCTACACTAAAC | 58.328 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
4446 | 5234 | 2.039348 | GCCCCTGTTGGTCTACACTAAA | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
4447 | 5235 | 1.626825 | GCCCCTGTTGGTCTACACTAA | 59.373 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
4448 | 5236 | 1.272807 | GCCCCTGTTGGTCTACACTA | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4449 | 5237 | 1.489560 | GGCCCCTGTTGGTCTACACT | 61.490 | 60.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4450 | 5238 | 1.002502 | GGCCCCTGTTGGTCTACAC | 60.003 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
4451 | 5239 | 0.844661 | ATGGCCCCTGTTGGTCTACA | 60.845 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4452 | 5240 | 0.394352 | CATGGCCCCTGTTGGTCTAC | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4453 | 5241 | 1.998530 | CATGGCCCCTGTTGGTCTA | 59.001 | 57.895 | 0.00 | 0.00 | 0.00 | 2.59 |
4454 | 5242 | 2.765969 | CATGGCCCCTGTTGGTCT | 59.234 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
4455 | 5243 | 3.070576 | GCATGGCCCCTGTTGGTC | 61.071 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
4456 | 5244 | 4.702274 | GGCATGGCCCCTGTTGGT | 62.702 | 66.667 | 8.35 | 0.00 | 44.06 | 3.67 |
4476 | 5264 | 4.161942 | TCAATGAATGCACAAATTAGGGGG | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 5.40 |
4477 | 5265 | 5.341872 | TCAATGAATGCACAAATTAGGGG | 57.658 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
4478 | 5266 | 6.632909 | TCTTCAATGAATGCACAAATTAGGG | 58.367 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4479 | 5267 | 8.537049 | TTTCTTCAATGAATGCACAAATTAGG | 57.463 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
4490 | 5278 | 9.635520 | AAAGTCTAGCATTTTCTTCAATGAATG | 57.364 | 29.630 | 0.00 | 0.00 | 36.39 | 2.67 |
4493 | 5281 | 8.950210 | CCTAAAGTCTAGCATTTTCTTCAATGA | 58.050 | 33.333 | 0.00 | 0.00 | 36.39 | 2.57 |
4494 | 5282 | 8.950210 | TCCTAAAGTCTAGCATTTTCTTCAATG | 58.050 | 33.333 | 0.00 | 0.00 | 37.23 | 2.82 |
4495 | 5283 | 9.171877 | CTCCTAAAGTCTAGCATTTTCTTCAAT | 57.828 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4496 | 5284 | 8.157476 | ACTCCTAAAGTCTAGCATTTTCTTCAA | 58.843 | 33.333 | 0.00 | 0.00 | 30.02 | 2.69 |
4497 | 5285 | 7.680730 | ACTCCTAAAGTCTAGCATTTTCTTCA | 58.319 | 34.615 | 0.00 | 0.00 | 30.02 | 3.02 |
4498 | 5286 | 9.654663 | TTACTCCTAAAGTCTAGCATTTTCTTC | 57.345 | 33.333 | 0.00 | 0.00 | 39.55 | 2.87 |
4499 | 5287 | 9.438228 | GTTACTCCTAAAGTCTAGCATTTTCTT | 57.562 | 33.333 | 0.00 | 0.00 | 39.55 | 2.52 |
4500 | 5288 | 8.817876 | AGTTACTCCTAAAGTCTAGCATTTTCT | 58.182 | 33.333 | 0.00 | 0.00 | 39.55 | 2.52 |
4547 | 5632 | 4.098044 | GCAAATTAGTAGGAAAGAAGGGGC | 59.902 | 45.833 | 0.00 | 0.00 | 0.00 | 5.80 |
4588 | 5674 | 3.243267 | GCTTTTGCAAAACGTAAGAGGGA | 60.243 | 43.478 | 20.46 | 0.00 | 46.58 | 4.20 |
4606 | 5692 | 1.544246 | GCGTTCCCCAACAATAGCTTT | 59.456 | 47.619 | 0.00 | 0.00 | 32.14 | 3.51 |
4643 | 5729 | 4.558226 | AGATCTTGCATGTGTGTAGGAA | 57.442 | 40.909 | 0.00 | 0.00 | 30.48 | 3.36 |
4650 | 5737 | 4.397103 | CACCATGTTAGATCTTGCATGTGT | 59.603 | 41.667 | 24.78 | 20.84 | 37.57 | 3.72 |
4655 | 5742 | 3.628942 | GCATCACCATGTTAGATCTTGCA | 59.371 | 43.478 | 0.00 | 0.43 | 31.86 | 4.08 |
4666 | 5753 | 1.672363 | CGTTGCTATGCATCACCATGT | 59.328 | 47.619 | 0.19 | 0.00 | 38.76 | 3.21 |
4685 | 5772 | 1.474879 | GGAGAACACTCTTCCCTCTCG | 59.525 | 57.143 | 0.00 | 0.00 | 34.58 | 4.04 |
4702 | 5789 | 3.465990 | TCTACGAGGGTACGTGGAG | 57.534 | 57.895 | 0.00 | 0.00 | 45.53 | 3.86 |
4724 | 5811 | 2.658373 | TGTCATAACGCTTCCGCTTA | 57.342 | 45.000 | 0.00 | 0.00 | 38.22 | 3.09 |
4765 | 7636 | 1.267261 | GATCGGTCGGATCGTGAAGAT | 59.733 | 52.381 | 10.85 | 0.00 | 42.02 | 2.40 |
4803 | 7674 | 1.293498 | GTGCAGATCGTGGAGGTGT | 59.707 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
4811 | 7682 | 1.284982 | GCTGAACGTGTGCAGATCGT | 61.285 | 55.000 | 12.25 | 5.82 | 39.49 | 3.73 |
4867 | 7738 | 1.658686 | CTGACGGAACTCTCCCTCGG | 61.659 | 65.000 | 0.00 | 0.00 | 38.71 | 4.63 |
4889 | 7760 | 3.676605 | ACCATCGTCACGCCGTCA | 61.677 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
4899 | 7770 | 4.442706 | GGTAACTTCATCATCACCATCGT | 58.557 | 43.478 | 0.00 | 0.00 | 0.00 | 3.73 |
4903 | 7774 | 2.679639 | GCCGGTAACTTCATCATCACCA | 60.680 | 50.000 | 1.90 | 0.00 | 0.00 | 4.17 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.