Multiple sequence alignment - TraesCS7A01G219400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G219400 chr7A 100.000 6621 0 0 1 6621 186644627 186638007 0.000000e+00 12227.0
1 TraesCS7A01G219400 chr7A 100.000 31 0 0 3907 3937 12720896 12720926 2.580000e-04 58.4
2 TraesCS7A01G219400 chr7D 94.623 3943 158 24 1 3909 184095974 184099896 0.000000e+00 6058.0
3 TraesCS7A01G219400 chr7D 97.425 2641 51 10 3985 6618 184099897 184102527 0.000000e+00 4484.0
4 TraesCS7A01G219400 chr7D 76.720 378 74 11 1 366 19325446 19325071 1.460000e-46 198.0
5 TraesCS7A01G219400 chr7D 100.000 30 0 0 3908 3937 59413152 59413181 1.000000e-03 56.5
6 TraesCS7A01G219400 chr7D 90.476 42 3 1 3895 3936 608529751 608529791 3.000000e-03 54.7
7 TraesCS7A01G219400 chr7B 91.673 2594 111 38 4063 6593 153326968 153329519 0.000000e+00 3496.0
8 TraesCS7A01G219400 chr7B 93.422 2098 116 18 1 2083 153322878 153324968 0.000000e+00 3090.0
9 TraesCS7A01G219400 chr7B 90.582 2028 133 21 2085 4078 153325010 153327013 0.000000e+00 2634.0
10 TraesCS7A01G219400 chr7B 82.609 368 44 15 1 349 527874896 527874530 2.320000e-79 307.0
11 TraesCS7A01G219400 chr7B 78.485 330 47 20 1 318 234010317 234010634 1.880000e-45 195.0
12 TraesCS7A01G219400 chr7B 79.528 254 43 9 1 247 579479195 579479446 8.830000e-39 172.0
13 TraesCS7A01G219400 chr7B 84.000 125 13 4 6469 6593 74095598 74095715 5.430000e-21 113.0
14 TraesCS7A01G219400 chr7B 91.935 62 3 2 3938 3998 741544804 741544864 1.180000e-12 86.1
15 TraesCS7A01G219400 chr3B 83.060 366 45 12 1 349 228806044 228805679 3.850000e-82 316.0
16 TraesCS7A01G219400 chr3A 81.440 361 44 15 1 345 467811880 467812233 2.350000e-69 274.0
17 TraesCS7A01G219400 chr3A 83.529 170 17 3 201 360 614470438 614470606 1.490000e-31 148.0
18 TraesCS7A01G219400 chr6A 81.006 358 48 10 1 340 538027916 538028271 3.940000e-67 267.0
19 TraesCS7A01G219400 chr6A 79.837 367 54 16 3063 3413 515672952 515672590 3.960000e-62 250.0
20 TraesCS7A01G219400 chr6A 82.993 147 25 0 3063 3209 516160389 516160243 4.170000e-27 134.0
21 TraesCS7A01G219400 chr6D 80.274 365 55 15 3063 3413 373424008 373423647 6.590000e-65 259.0
22 TraesCS7A01G219400 chr6D 84.354 147 23 0 3063 3209 374107847 374107701 1.920000e-30 145.0
23 TraesCS7A01G219400 chr6D 96.226 53 2 0 3937 3989 218447273 218447221 3.290000e-13 87.9
24 TraesCS7A01G219400 chr6D 87.342 79 3 2 3908 3986 388973708 388973779 4.250000e-12 84.2
25 TraesCS7A01G219400 chr6D 82.759 87 11 3 3901 3986 110656616 110656699 2.560000e-09 75.0
26 TraesCS7A01G219400 chr6B 79.945 364 55 15 3063 3413 561151645 561151287 1.100000e-62 252.0
27 TraesCS7A01G219400 chr6B 85.034 147 22 0 3063 3209 561274700 561274554 4.140000e-32 150.0
28 TraesCS7A01G219400 chr3D 80.609 361 39 14 1 351 11794264 11794603 3.960000e-62 250.0
29 TraesCS7A01G219400 chr3D 97.500 40 1 0 2045 2084 11609215 11609254 1.190000e-07 69.4
30 TraesCS7A01G219400 chr3D 97.297 37 1 0 2047 2083 23206186 23206150 5.540000e-06 63.9
31 TraesCS7A01G219400 chr1A 81.024 332 45 9 1 316 549489396 549489067 1.430000e-61 248.0
32 TraesCS7A01G219400 chr2D 80.115 347 44 12 39 360 600412757 600413103 1.110000e-57 235.0
33 TraesCS7A01G219400 chr2D 78.947 323 52 8 1 312 568932305 568932622 8.700000e-49 206.0
34 TraesCS7A01G219400 chr2D 97.368 38 1 0 2047 2084 641605359 641605322 1.540000e-06 65.8
35 TraesCS7A01G219400 chr2D 100.000 30 0 0 3908 3937 331737116 331737145 1.000000e-03 56.5
36 TraesCS7A01G219400 chr1B 78.400 375 62 10 1 360 667612269 667612639 6.680000e-55 226.0
37 TraesCS7A01G219400 chr1B 96.491 57 1 1 3938 3993 249624945 249624889 7.070000e-15 93.5
38 TraesCS7A01G219400 chr5A 81.526 249 38 6 3 245 559522748 559522502 1.460000e-46 198.0
39 TraesCS7A01G219400 chr5A 97.297 37 1 0 2048 2084 34757699 34757663 5.540000e-06 63.9
40 TraesCS7A01G219400 chr5A 100.000 31 0 0 3908 3938 440988307 440988337 2.580000e-04 58.4
41 TraesCS7A01G219400 chr5D 89.744 78 2 2 3908 3985 553963384 553963455 1.970000e-15 95.3
42 TraesCS7A01G219400 chr5D 98.000 50 1 0 3941 3990 549892706 549892657 3.290000e-13 87.9
43 TraesCS7A01G219400 chr4D 98.039 51 1 0 3938 3988 441486766 441486816 9.140000e-14 89.8
44 TraesCS7A01G219400 chr4A 87.179 78 10 0 3907 3984 738393364 738393441 9.140000e-14 89.8
45 TraesCS7A01G219400 chr4A 95.000 40 2 0 2044 2083 21221910 21221949 5.540000e-06 63.9
46 TraesCS7A01G219400 chr4A 93.182 44 1 2 2041 2083 511046656 511046698 5.540000e-06 63.9
47 TraesCS7A01G219400 chr1D 96.296 54 2 0 3938 3991 169065355 169065408 9.140000e-14 89.8
48 TraesCS7A01G219400 chr2B 97.500 40 1 0 2045 2084 602259957 602259918 1.190000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G219400 chr7A 186638007 186644627 6620 True 12227.000000 12227 100.000000 1 6621 1 chr7A.!!$R1 6620
1 TraesCS7A01G219400 chr7D 184095974 184102527 6553 False 5271.000000 6058 96.024000 1 6618 2 chr7D.!!$F3 6617
2 TraesCS7A01G219400 chr7B 153322878 153329519 6641 False 3073.333333 3496 91.892333 1 6593 3 chr7B.!!$F5 6592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 362 1.217244 GAGTGCCCGGTCATTACGT 59.783 57.895 0.00 0.0 0.0 3.57 F
1239 1251 0.028902 GGTTGTTGACTTGTGCCGTC 59.971 55.000 0.00 0.0 0.0 4.79 F
2987 3066 0.178981 ATGTGGAGGCTGCTTGTTGT 60.179 50.000 7.74 0.0 0.0 3.32 F
3932 4012 0.107848 CTCCGCCCCGAATTACTTGT 60.108 55.000 0.00 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1357 1.604604 GCTTCAAGGTTGTGTAGGCA 58.395 50.0 0.0 0.0 0.00 4.75 R
3193 3272 0.033504 ACACTACCTCACTTGGTGCG 59.966 55.0 0.0 0.0 41.05 5.34 R
3913 3993 0.107848 ACAAGTAATTCGGGGCGGAG 60.108 55.0 0.0 0.0 0.00 4.63 R
5808 6029 0.991355 AGGTCCTGTCCCAAACACCA 60.991 55.0 0.0 0.0 33.24 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.836072 TCCATCCAGGATGAGGCA 57.164 55.556 28.79 8.39 43.07 4.75
112 113 2.282674 CTTTGGCAGGAGCAGGCA 60.283 61.111 0.00 0.00 44.61 4.75
184 188 3.744719 CGGAGCCGGACACGAAGA 61.745 66.667 5.05 0.00 44.60 2.87
185 189 2.893398 GGAGCCGGACACGAAGAT 59.107 61.111 5.05 0.00 44.60 2.40
190 196 2.452813 CCGGACACGAAGATTGCCG 61.453 63.158 0.00 0.00 44.60 5.69
206 212 3.467226 CGCCCATGTACCCGGAGT 61.467 66.667 0.73 0.99 0.00 3.85
231 239 2.625737 CACGAAGATTGCCACATCTCT 58.374 47.619 0.00 0.00 0.00 3.10
233 241 1.938577 CGAAGATTGCCACATCTCTGG 59.061 52.381 0.00 0.00 0.00 3.86
318 326 8.932610 AGAATTTAGTATGAGATGTCTGGATGT 58.067 33.333 0.00 0.00 0.00 3.06
343 351 3.153919 TGTGTTAATTTGAGGAGTGCCC 58.846 45.455 0.00 0.00 33.31 5.36
353 361 1.520787 GGAGTGCCCGGTCATTACG 60.521 63.158 0.00 0.00 0.00 3.18
354 362 1.217244 GAGTGCCCGGTCATTACGT 59.783 57.895 0.00 0.00 0.00 3.57
390 398 1.257675 CGCGTCGATTTGTCATATGCA 59.742 47.619 0.00 0.00 0.00 3.96
411 422 7.237209 TGCAGCTGTAGATGATCTTATGTAT 57.763 36.000 16.64 0.00 32.25 2.29
413 424 8.152898 TGCAGCTGTAGATGATCTTATGTATTT 58.847 33.333 16.64 0.00 32.25 1.40
437 449 5.650266 TCCATTTAATACGGTGCAAAGACAT 59.350 36.000 0.00 0.00 0.00 3.06
447 459 4.142403 CGGTGCAAAGACATGACCAAATAT 60.142 41.667 0.00 0.00 0.00 1.28
571 583 3.822996 ACGTTCAGTTCTGTCTGTATCG 58.177 45.455 0.00 0.00 36.85 2.92
609 621 3.945434 TATCGGCGCCGTCTCGAC 61.945 66.667 44.16 7.41 40.74 4.20
706 718 3.554692 CGTCCTAAAGCGCGCCAG 61.555 66.667 30.33 21.79 0.00 4.85
763 775 1.344953 ATTGGCCTGGCGTGGAGATA 61.345 55.000 13.40 0.00 0.00 1.98
813 825 3.139077 ACGAAGACCTAACTTGCTTTGG 58.861 45.455 0.00 0.00 0.00 3.28
815 827 3.186613 CGAAGACCTAACTTGCTTTGGAC 59.813 47.826 0.00 0.00 0.00 4.02
1046 1058 3.851458 TGAGGACATGGAGGATGATTG 57.149 47.619 0.00 0.00 35.80 2.67
1057 1069 3.306989 GGAGGATGATTGCGACATGGATA 60.307 47.826 0.00 0.00 0.00 2.59
1163 1175 1.202582 AGCGGTGTGTATCTGTCTGTC 59.797 52.381 0.00 0.00 0.00 3.51
1238 1250 1.711060 CGGTTGTTGACTTGTGCCGT 61.711 55.000 0.00 0.00 33.87 5.68
1239 1251 0.028902 GGTTGTTGACTTGTGCCGTC 59.971 55.000 0.00 0.00 0.00 4.79
1241 1253 0.741574 TTGTTGACTTGTGCCGTCGT 60.742 50.000 0.00 0.00 34.17 4.34
1250 1265 2.081725 TGTGCCGTCGTATTAAGCAA 57.918 45.000 0.00 0.00 34.79 3.91
1286 1301 4.685924 AGGCAGTTGAAATTGTTGACTTG 58.314 39.130 0.00 0.00 0.00 3.16
1321 1336 4.578928 AGTTTGGAATTAGTGTGACACCAC 59.421 41.667 12.81 1.79 43.46 4.16
1342 1357 5.882557 CCACACTTTCAAAGGATAGCTACAT 59.117 40.000 1.31 0.00 0.00 2.29
1437 1453 3.066203 ACTTGGGTGTTTCTTAAACTGCG 59.934 43.478 4.35 0.00 41.90 5.18
1532 1548 7.288852 TCCAATGAGTTAGGAAAAACAATCCAA 59.711 33.333 0.00 0.00 39.55 3.53
1765 1782 0.693049 AGGAATACCATGGGATCGCC 59.307 55.000 18.09 17.69 38.94 5.54
1905 1922 4.935205 TGTGTGGGAGAAAATATTCTGACG 59.065 41.667 0.00 0.00 45.91 4.35
2032 2049 9.042450 TCTACATTTTCAGGTGAGTTCCTATAA 57.958 33.333 0.00 0.00 35.87 0.98
2055 2072 7.852550 AAGTCCTTGTTTAGTAAGTACTCCT 57.147 36.000 0.00 0.00 37.73 3.69
2076 2093 6.320518 TCCTTCCGTCCCATAATATAAGAGT 58.679 40.000 0.00 0.00 0.00 3.24
2204 2261 7.432350 TTCAAAAGATTAAATGGCGCATTTT 57.568 28.000 18.37 14.89 40.60 1.82
2313 2371 4.386413 CACAGGAAGTGCCCAGTC 57.614 61.111 0.00 0.00 42.15 3.51
2402 2460 7.685594 AGGCTATCGAGAAACTTTTTAAATCG 58.314 34.615 0.00 0.00 0.00 3.34
2411 2469 9.726232 GAGAAACTTTTTAAATCGTAACCAACT 57.274 29.630 0.00 0.00 0.00 3.16
2655 2730 6.191657 TGATAGCCATCTTTATGACCATGT 57.808 37.500 0.00 0.00 34.84 3.21
2773 2848 8.750515 TGATTGTATTTTCTATGCCAAGATGA 57.249 30.769 0.00 0.00 0.00 2.92
2820 2895 2.945668 CCGAGAACTCCCATGGAATTTC 59.054 50.000 15.22 11.81 0.00 2.17
2841 2916 2.163613 CGGGTTCTATTTGGCTTGGTTC 59.836 50.000 0.00 0.00 0.00 3.62
2842 2917 3.161866 GGGTTCTATTTGGCTTGGTTCA 58.838 45.455 0.00 0.00 0.00 3.18
2926 3005 4.636206 ACCTGTTCAAAGACTTGTCTGTTC 59.364 41.667 3.87 0.00 33.94 3.18
2930 3009 5.296780 TGTTCAAAGACTTGTCTGTTCCATC 59.703 40.000 3.87 0.00 33.94 3.51
2943 3022 5.530171 GTCTGTTCCATCATTCTGCATGTAT 59.470 40.000 0.00 0.00 34.06 2.29
2987 3066 0.178981 ATGTGGAGGCTGCTTGTTGT 60.179 50.000 7.74 0.00 0.00 3.32
2996 3075 2.878406 GGCTGCTTGTTGTCAGTCTTAA 59.122 45.455 0.00 0.00 32.55 1.85
3193 3272 6.992063 ATTATGAATGTCGAAGGGCATATC 57.008 37.500 0.00 0.00 0.00 1.63
3245 3324 7.396540 ACTAAATTTTCATCCTAGGTTGCAG 57.603 36.000 14.14 5.81 0.00 4.41
3254 3333 5.415701 TCATCCTAGGTTGCAGTTTCATTTC 59.584 40.000 14.14 0.00 0.00 2.17
3419 3498 7.512992 AGCTAATATGCAAAGTAGGATCACTT 58.487 34.615 0.00 0.00 40.49 3.16
3448 3527 5.128663 ACTTTGTTTTTGCACTGACCCTAAT 59.871 36.000 0.00 0.00 0.00 1.73
3587 3666 1.423584 TCTGTGTTTCTCCTGCCTCA 58.576 50.000 0.00 0.00 0.00 3.86
3588 3667 1.070758 TCTGTGTTTCTCCTGCCTCAC 59.929 52.381 0.00 0.00 0.00 3.51
3589 3668 0.108585 TGTGTTTCTCCTGCCTCACC 59.891 55.000 0.00 0.00 0.00 4.02
3590 3669 0.951040 GTGTTTCTCCTGCCTCACCG 60.951 60.000 0.00 0.00 0.00 4.94
3711 3790 1.548582 CCCCCTGTTCACTTGCTTCAT 60.549 52.381 0.00 0.00 0.00 2.57
3782 3861 0.398318 GCACCTGACAGAACCTCCTT 59.602 55.000 3.32 0.00 0.00 3.36
3788 3867 1.202687 TGACAGAACCTCCTTGTGCAG 60.203 52.381 0.00 0.00 0.00 4.41
3909 3989 7.769044 TCCCTTAAATTTGTCACTATCTGCTAC 59.231 37.037 0.00 0.00 0.00 3.58
3910 3990 7.770897 CCCTTAAATTTGTCACTATCTGCTACT 59.229 37.037 0.00 0.00 0.00 2.57
3911 3991 8.821894 CCTTAAATTTGTCACTATCTGCTACTC 58.178 37.037 0.00 0.00 0.00 2.59
3912 3992 8.718102 TTAAATTTGTCACTATCTGCTACTCC 57.282 34.615 0.00 0.00 0.00 3.85
3913 3993 4.737855 TTTGTCACTATCTGCTACTCCC 57.262 45.455 0.00 0.00 0.00 4.30
3914 3994 3.671740 TGTCACTATCTGCTACTCCCT 57.328 47.619 0.00 0.00 0.00 4.20
3915 3995 3.556999 TGTCACTATCTGCTACTCCCTC 58.443 50.000 0.00 0.00 0.00 4.30
3916 3996 2.888414 GTCACTATCTGCTACTCCCTCC 59.112 54.545 0.00 0.00 0.00 4.30
3917 3997 1.883275 CACTATCTGCTACTCCCTCCG 59.117 57.143 0.00 0.00 0.00 4.63
3918 3998 0.885196 CTATCTGCTACTCCCTCCGC 59.115 60.000 0.00 0.00 0.00 5.54
3919 3999 0.539901 TATCTGCTACTCCCTCCGCC 60.540 60.000 0.00 0.00 0.00 6.13
3920 4000 3.541713 CTGCTACTCCCTCCGCCC 61.542 72.222 0.00 0.00 0.00 6.13
3923 4003 4.517934 CTACTCCCTCCGCCCCGA 62.518 72.222 0.00 0.00 0.00 5.14
3924 4004 4.064768 TACTCCCTCCGCCCCGAA 62.065 66.667 0.00 0.00 0.00 4.30
3925 4005 3.384555 TACTCCCTCCGCCCCGAAT 62.385 63.158 0.00 0.00 0.00 3.34
3926 4006 2.884179 TACTCCCTCCGCCCCGAATT 62.884 60.000 0.00 0.00 0.00 2.17
3927 4007 2.041715 TCCCTCCGCCCCGAATTA 60.042 61.111 0.00 0.00 0.00 1.40
3928 4008 2.110420 CCCTCCGCCCCGAATTAC 59.890 66.667 0.00 0.00 0.00 1.89
3929 4009 2.440817 CCCTCCGCCCCGAATTACT 61.441 63.158 0.00 0.00 0.00 2.24
3930 4010 1.525442 CCTCCGCCCCGAATTACTT 59.475 57.895 0.00 0.00 0.00 2.24
3931 4011 0.814010 CCTCCGCCCCGAATTACTTG 60.814 60.000 0.00 0.00 0.00 3.16
3932 4012 0.107848 CTCCGCCCCGAATTACTTGT 60.108 55.000 0.00 0.00 0.00 3.16
3933 4013 0.108041 TCCGCCCCGAATTACTTGTC 60.108 55.000 0.00 0.00 0.00 3.18
3934 4014 1.426041 CCGCCCCGAATTACTTGTCG 61.426 60.000 0.00 0.00 37.01 4.35
3935 4015 1.719709 GCCCCGAATTACTTGTCGC 59.280 57.895 0.00 0.00 35.93 5.19
3936 4016 1.022451 GCCCCGAATTACTTGTCGCA 61.022 55.000 0.00 0.00 35.93 5.10
3937 4017 1.663695 CCCCGAATTACTTGTCGCAT 58.336 50.000 0.00 0.00 35.93 4.73
3938 4018 2.014128 CCCCGAATTACTTGTCGCATT 58.986 47.619 0.00 0.00 35.93 3.56
3939 4019 2.031683 CCCCGAATTACTTGTCGCATTC 59.968 50.000 0.00 0.00 35.93 2.67
3940 4020 2.936498 CCCGAATTACTTGTCGCATTCT 59.064 45.455 0.00 0.00 35.93 2.40
3941 4021 4.116961 CCCGAATTACTTGTCGCATTCTA 58.883 43.478 0.00 0.00 35.93 2.10
3942 4022 4.209288 CCCGAATTACTTGTCGCATTCTAG 59.791 45.833 0.00 0.00 35.93 2.43
3943 4023 5.041287 CCGAATTACTTGTCGCATTCTAGA 58.959 41.667 0.00 0.00 35.93 2.43
3944 4024 5.692204 CCGAATTACTTGTCGCATTCTAGAT 59.308 40.000 0.00 0.00 35.93 1.98
3945 4025 6.861572 CCGAATTACTTGTCGCATTCTAGATA 59.138 38.462 0.00 0.00 35.93 1.98
3946 4026 7.148950 CCGAATTACTTGTCGCATTCTAGATAC 60.149 40.741 0.00 0.00 35.93 2.24
3947 4027 7.378728 CGAATTACTTGTCGCATTCTAGATACA 59.621 37.037 0.00 0.00 0.00 2.29
3948 4028 9.197694 GAATTACTTGTCGCATTCTAGATACAT 57.802 33.333 0.00 0.00 0.00 2.29
3949 4029 8.749841 ATTACTTGTCGCATTCTAGATACATC 57.250 34.615 0.00 0.00 0.00 3.06
3950 4030 5.533482 ACTTGTCGCATTCTAGATACATCC 58.467 41.667 0.00 0.00 0.00 3.51
3951 4031 5.069119 ACTTGTCGCATTCTAGATACATCCA 59.931 40.000 0.00 0.00 0.00 3.41
3952 4032 5.728637 TGTCGCATTCTAGATACATCCAT 57.271 39.130 0.00 0.00 0.00 3.41
3953 4033 6.101650 TGTCGCATTCTAGATACATCCATT 57.898 37.500 0.00 0.00 0.00 3.16
3954 4034 6.524734 TGTCGCATTCTAGATACATCCATTT 58.475 36.000 0.00 0.00 0.00 2.32
3955 4035 6.646653 TGTCGCATTCTAGATACATCCATTTC 59.353 38.462 0.00 0.00 0.00 2.17
3956 4036 6.870965 GTCGCATTCTAGATACATCCATTTCT 59.129 38.462 0.00 0.00 0.00 2.52
3957 4037 6.870439 TCGCATTCTAGATACATCCATTTCTG 59.130 38.462 0.00 0.00 0.00 3.02
3958 4038 6.401903 CGCATTCTAGATACATCCATTTCTGC 60.402 42.308 0.00 0.00 0.00 4.26
3959 4039 6.401903 GCATTCTAGATACATCCATTTCTGCG 60.402 42.308 0.00 0.00 0.00 5.18
3960 4040 6.405278 TTCTAGATACATCCATTTCTGCGA 57.595 37.500 0.00 0.00 0.00 5.10
3961 4041 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
3962 4042 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
3963 4043 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
3964 4044 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
3965 4045 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
3966 4046 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
3967 4047 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
3968 4048 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
3969 4049 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
3970 4050 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
3971 4051 4.092821 TCCATTTCTGCGACAAGTAATTCG 59.907 41.667 0.00 0.00 38.31 3.34
3972 4052 4.334443 CATTTCTGCGACAAGTAATTCGG 58.666 43.478 0.00 0.00 35.73 4.30
3973 4053 2.004583 TCTGCGACAAGTAATTCGGG 57.995 50.000 0.00 0.00 35.73 5.14
3974 4054 1.006832 CTGCGACAAGTAATTCGGGG 58.993 55.000 0.00 0.00 35.73 5.73
3975 4055 1.022451 TGCGACAAGTAATTCGGGGC 61.022 55.000 0.00 0.00 35.73 5.80
3976 4056 2.003672 CGACAAGTAATTCGGGGCG 58.996 57.895 0.00 0.00 0.00 6.13
3977 4057 1.426041 CGACAAGTAATTCGGGGCGG 61.426 60.000 0.00 0.00 0.00 6.13
3978 4058 0.108041 GACAAGTAATTCGGGGCGGA 60.108 55.000 0.00 0.00 0.00 5.54
3979 4059 0.107848 ACAAGTAATTCGGGGCGGAG 60.108 55.000 0.00 0.00 0.00 4.63
3980 4060 0.814010 CAAGTAATTCGGGGCGGAGG 60.814 60.000 0.00 0.00 0.00 4.30
3981 4061 1.979619 AAGTAATTCGGGGCGGAGGG 61.980 60.000 0.00 0.00 0.00 4.30
3982 4062 2.041715 TAATTCGGGGCGGAGGGA 60.042 61.111 0.00 0.00 0.00 4.20
3983 4063 2.138179 TAATTCGGGGCGGAGGGAG 61.138 63.158 0.00 0.00 0.00 4.30
4054 4216 3.700538 TGATGAGGTTCCATTTTCCCTG 58.299 45.455 0.00 0.00 0.00 4.45
4235 4399 3.957497 ACAAATTCAGTGGGCAAGTAACA 59.043 39.130 0.00 0.00 0.00 2.41
4290 4455 7.049754 TGCTGAATATATTTGTGAGCTCTTGA 58.950 34.615 16.19 0.00 0.00 3.02
4640 4826 4.016444 TGGTCCATAATTTCTTCAGTGGC 58.984 43.478 0.00 0.00 0.00 5.01
5119 5339 5.456763 GCTTGACCCTGGAATCCAACTATAT 60.457 44.000 2.61 0.00 30.80 0.86
5194 5414 9.868277 CCACATCTTCTCTTATTATATCTGGAC 57.132 37.037 0.00 0.00 0.00 4.02
5648 5869 7.153315 GGTAACCTTGGTGCTATAAGATCTAC 58.847 42.308 0.00 0.00 0.00 2.59
5677 5898 3.055602 CACATCAGATGGTCAGTTCCTGA 60.056 47.826 15.13 0.00 38.12 3.86
5913 6134 3.306703 GTCAATGCAAACAAGTGTTGGTG 59.693 43.478 0.00 0.00 38.44 4.17
6272 6494 8.612619 GTTATACACCTGTTTGTGAATCCTATG 58.387 37.037 0.00 0.00 39.57 2.23
6527 6756 1.541147 ACAATCGTTCATTGCAGGTGG 59.459 47.619 1.90 0.00 45.37 4.61
6528 6757 0.527565 AATCGTTCATTGCAGGTGGC 59.472 50.000 1.90 0.00 45.13 5.01
6529 6758 1.315257 ATCGTTCATTGCAGGTGGCC 61.315 55.000 0.00 0.00 43.89 5.36
6530 6759 2.267351 CGTTCATTGCAGGTGGCCA 61.267 57.895 0.00 0.00 43.89 5.36
6531 6760 1.588082 GTTCATTGCAGGTGGCCAG 59.412 57.895 5.11 0.00 43.89 4.85
6532 6761 1.607178 TTCATTGCAGGTGGCCAGG 60.607 57.895 5.11 0.00 43.89 4.45
6533 6762 2.283388 CATTGCAGGTGGCCAGGT 60.283 61.111 5.11 0.00 43.89 4.00
6534 6763 2.283388 ATTGCAGGTGGCCAGGTG 60.283 61.111 5.11 7.98 43.89 4.00
6538 6767 2.759114 CAGGTGGCCAGGTGTCAT 59.241 61.111 5.11 0.00 0.00 3.06
6618 6847 7.810658 ACTAAATTTAGCAATCATATGAGCCG 58.189 34.615 22.45 3.24 34.09 5.52
6619 6848 4.691860 ATTTAGCAATCATATGAGCCGC 57.308 40.909 11.78 12.66 0.00 6.53
6620 6849 3.407424 TTAGCAATCATATGAGCCGCT 57.593 42.857 22.48 22.48 33.33 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.053395 ACTGTTGATTGGCCTCCACATAT 60.053 43.478 3.32 0.00 30.78 1.78
130 131 0.812014 TCTTCGCGTCAAGTTTGGCA 60.812 50.000 5.77 0.00 31.86 4.92
177 181 2.114670 ATGGGCGGCAATCTTCGTG 61.115 57.895 12.47 0.00 0.00 4.35
182 186 1.152963 GGTACATGGGCGGCAATCT 60.153 57.895 12.47 0.00 0.00 2.40
183 187 2.193536 GGGTACATGGGCGGCAATC 61.194 63.158 12.47 0.00 0.00 2.67
184 188 2.123897 GGGTACATGGGCGGCAAT 60.124 61.111 12.47 0.49 0.00 3.56
185 189 4.787286 CGGGTACATGGGCGGCAA 62.787 66.667 12.47 0.00 0.00 4.52
190 196 2.504519 GACTCCGGGTACATGGGC 59.495 66.667 0.00 0.00 0.00 5.36
231 239 0.178767 TACGTAGCTACTCCTCGCCA 59.821 55.000 21.20 0.00 0.00 5.69
233 241 1.580815 ACTACGTAGCTACTCCTCGC 58.419 55.000 22.40 0.00 0.00 5.03
318 326 5.472137 GGCACTCCTCAAATTAACACAACTA 59.528 40.000 0.00 0.00 0.00 2.24
343 351 0.094046 GTTTCCGCACGTAATGACCG 59.906 55.000 0.00 0.00 0.00 4.79
366 374 1.635844 ATGACAAATCGACGCGCTTA 58.364 45.000 5.73 0.00 0.00 3.09
367 375 1.635844 TATGACAAATCGACGCGCTT 58.364 45.000 5.73 0.00 0.00 4.68
390 398 8.874156 TGGAAATACATAAGATCATCTACAGCT 58.126 33.333 0.00 0.00 0.00 4.24
411 422 6.016192 TGTCTTTGCACCGTATTAAATGGAAA 60.016 34.615 0.00 0.00 37.73 3.13
413 424 5.004448 TGTCTTTGCACCGTATTAAATGGA 58.996 37.500 0.00 0.00 37.73 3.41
437 449 8.103935 TCGTATGCCCATATTTATATTTGGTCA 58.896 33.333 2.87 0.00 32.68 4.02
447 459 7.731882 TTTCGAATTCGTATGCCCATATTTA 57.268 32.000 25.93 0.00 40.80 1.40
513 525 7.201487 CCTTTTTGAGGGACGTTTTTGTTTTAG 60.201 37.037 0.00 0.00 42.26 1.85
571 583 2.124693 CGAGAGGAGAGGTCTGGCC 61.125 68.421 0.00 0.00 37.58 5.36
609 621 0.377203 GAATTAGGCGGTGCGAAAGG 59.623 55.000 0.00 0.00 0.00 3.11
763 775 2.360726 GAAAATCCGCGGGGGTGT 60.361 61.111 27.83 2.81 37.00 4.16
829 841 4.778904 TCGCATCAAAAGAAAACGTTAGG 58.221 39.130 0.00 0.00 0.00 2.69
1046 1058 2.230508 TCTACCGGATTATCCATGTCGC 59.769 50.000 9.46 0.00 35.91 5.19
1057 1069 3.008375 CCATCCATGTCATCTACCGGATT 59.992 47.826 9.46 0.00 37.31 3.01
1238 1250 7.506114 AGTTATCCCTTCATTGCTTAATACGA 58.494 34.615 0.00 0.00 0.00 3.43
1239 1251 7.730364 AGTTATCCCTTCATTGCTTAATACG 57.270 36.000 0.00 0.00 0.00 3.06
1241 1253 7.883311 GCCTAGTTATCCCTTCATTGCTTAATA 59.117 37.037 0.00 0.00 0.00 0.98
1250 1265 4.721776 TCAACTGCCTAGTTATCCCTTCAT 59.278 41.667 0.00 0.00 45.12 2.57
1286 1301 7.698130 CACTAATTCCAAACTTAACATAGCAGC 59.302 37.037 0.00 0.00 0.00 5.25
1321 1336 5.220931 GGCATGTAGCTATCCTTTGAAAGTG 60.221 44.000 4.02 0.00 44.79 3.16
1342 1357 1.604604 GCTTCAAGGTTGTGTAGGCA 58.395 50.000 0.00 0.00 0.00 4.75
1437 1453 8.105097 AGCAAAGAGAGAAAAGATAGGAAAAC 57.895 34.615 0.00 0.00 0.00 2.43
1505 1521 7.288852 TGGATTGTTTTTCCTAACTCATTGGAA 59.711 33.333 0.00 0.00 38.00 3.53
1562 1578 2.479566 TAGCTCTGGTGGCTCAAAAG 57.520 50.000 0.00 0.00 40.74 2.27
1620 1636 7.095649 GCAATGGGAATAGTCAAACAAAGTTTC 60.096 37.037 0.00 0.00 0.00 2.78
1623 1639 5.539955 AGCAATGGGAATAGTCAAACAAAGT 59.460 36.000 0.00 0.00 0.00 2.66
2012 2029 6.500751 AGGACTTATAGGAACTCACCTGAAAA 59.499 38.462 0.00 0.00 41.75 2.29
2055 2072 6.989155 ACACTCTTATATTATGGGACGGAA 57.011 37.500 0.00 0.00 0.00 4.30
2204 2261 2.458951 GCAGACACGTTGCAATTGAAA 58.541 42.857 10.34 0.93 41.17 2.69
2370 2428 2.691011 GTTTCTCGATAGCCTCTCCACT 59.309 50.000 0.00 0.00 0.00 4.00
2402 2460 5.785243 AGAAGTAGAGAGCAAGTTGGTTAC 58.215 41.667 9.30 8.01 0.00 2.50
2411 2469 5.536538 TGAACTGAAGAGAAGTAGAGAGCAA 59.463 40.000 0.00 0.00 0.00 3.91
2689 2764 5.445964 TCTAGGCACCCCTTCAATTAATTC 58.554 41.667 0.00 0.00 42.87 2.17
2773 2848 6.485313 TGGACTTTATTTTCACACAGTCGATT 59.515 34.615 0.00 0.00 32.94 3.34
2820 2895 1.834188 ACCAAGCCAAATAGAACCCG 58.166 50.000 0.00 0.00 0.00 5.28
2841 2916 4.127171 CAGGGTGGTTAATAGACCGATTG 58.873 47.826 0.00 0.00 42.83 2.67
2842 2917 3.433173 GCAGGGTGGTTAATAGACCGATT 60.433 47.826 0.00 0.00 42.83 3.34
2891 2970 8.576442 AGTCTTTGAACAGGTTAAACCATTATG 58.424 33.333 0.00 0.00 41.95 1.90
2926 3005 7.837202 AACAAAAATACATGCAGAATGATGG 57.163 32.000 0.00 0.00 39.69 3.51
2987 3066 9.466497 AAATAAAGGAGCATCAATTAAGACTGA 57.534 29.630 0.00 0.00 36.25 3.41
2996 3075 9.028284 TCAGAAGAAAAATAAAGGAGCATCAAT 57.972 29.630 0.00 0.00 36.25 2.57
3051 3130 3.881688 CAGCTGCAGGCATAGATTAACTT 59.118 43.478 17.12 0.00 44.79 2.66
3109 3188 6.384224 CACCGAGTAATGCGATATTAGGTAA 58.616 40.000 0.00 0.00 0.00 2.85
3193 3272 0.033504 ACACTACCTCACTTGGTGCG 59.966 55.000 0.00 0.00 41.05 5.34
3245 3324 8.499403 AATAGAGGTAGAGCAAGAAATGAAAC 57.501 34.615 0.00 0.00 0.00 2.78
3419 3498 6.039616 GGTCAGTGCAAAAACAAAGTGATAA 58.960 36.000 0.00 0.00 0.00 1.75
3454 3533 1.120530 TTGCGAGATAGAACTCCCCC 58.879 55.000 0.00 0.00 33.83 5.40
3587 3666 3.931375 TAGGGTGGGTGGGTCGGT 61.931 66.667 0.00 0.00 0.00 4.69
3588 3667 3.396570 GTAGGGTGGGTGGGTCGG 61.397 72.222 0.00 0.00 0.00 4.79
3589 3668 1.559065 ATTGTAGGGTGGGTGGGTCG 61.559 60.000 0.00 0.00 0.00 4.79
3590 3669 0.702316 AATTGTAGGGTGGGTGGGTC 59.298 55.000 0.00 0.00 0.00 4.46
3711 3790 0.827925 AGAAGTCAGTGCCGAGGTCA 60.828 55.000 0.00 0.00 0.00 4.02
3782 3861 2.042464 AGAAGACCTTCAGACTGCACA 58.958 47.619 11.80 0.00 41.84 4.57
3909 3989 2.138179 TAATTCGGGGCGGAGGGAG 61.138 63.158 0.00 0.00 0.00 4.30
3910 3990 2.041715 TAATTCGGGGCGGAGGGA 60.042 61.111 0.00 0.00 0.00 4.20
3911 3991 1.979619 AAGTAATTCGGGGCGGAGGG 61.980 60.000 0.00 0.00 0.00 4.30
3912 3992 0.814010 CAAGTAATTCGGGGCGGAGG 60.814 60.000 0.00 0.00 0.00 4.30
3913 3993 0.107848 ACAAGTAATTCGGGGCGGAG 60.108 55.000 0.00 0.00 0.00 4.63
3914 3994 0.108041 GACAAGTAATTCGGGGCGGA 60.108 55.000 0.00 0.00 0.00 5.54
3915 3995 1.426041 CGACAAGTAATTCGGGGCGG 61.426 60.000 0.00 0.00 0.00 6.13
3916 3996 2.003672 CGACAAGTAATTCGGGGCG 58.996 57.895 0.00 0.00 0.00 6.13
3917 3997 1.022451 TGCGACAAGTAATTCGGGGC 61.022 55.000 0.00 0.00 35.73 5.80
3918 3998 1.663695 ATGCGACAAGTAATTCGGGG 58.336 50.000 0.00 0.00 35.73 5.73
3919 3999 2.936498 AGAATGCGACAAGTAATTCGGG 59.064 45.455 0.00 0.00 35.73 5.14
3920 4000 5.041287 TCTAGAATGCGACAAGTAATTCGG 58.959 41.667 0.00 0.00 35.73 4.30
3921 4001 6.755461 ATCTAGAATGCGACAAGTAATTCG 57.245 37.500 0.00 0.00 38.31 3.34
3922 4002 8.575565 TGTATCTAGAATGCGACAAGTAATTC 57.424 34.615 0.00 0.00 0.00 2.17
3923 4003 9.197694 GATGTATCTAGAATGCGACAAGTAATT 57.802 33.333 0.00 0.00 0.00 1.40
3924 4004 7.815068 GGATGTATCTAGAATGCGACAAGTAAT 59.185 37.037 0.00 0.00 0.00 1.89
3925 4005 7.145985 GGATGTATCTAGAATGCGACAAGTAA 58.854 38.462 0.00 0.00 0.00 2.24
3926 4006 6.264518 TGGATGTATCTAGAATGCGACAAGTA 59.735 38.462 0.00 0.00 0.00 2.24
3927 4007 5.069119 TGGATGTATCTAGAATGCGACAAGT 59.931 40.000 0.00 0.00 0.00 3.16
3928 4008 5.532557 TGGATGTATCTAGAATGCGACAAG 58.467 41.667 0.00 0.00 0.00 3.16
3929 4009 5.529581 TGGATGTATCTAGAATGCGACAA 57.470 39.130 0.00 0.00 0.00 3.18
3930 4010 5.728637 ATGGATGTATCTAGAATGCGACA 57.271 39.130 0.00 0.00 0.00 4.35
3931 4011 6.870965 AGAAATGGATGTATCTAGAATGCGAC 59.129 38.462 0.00 0.00 0.00 5.19
3932 4012 6.870439 CAGAAATGGATGTATCTAGAATGCGA 59.130 38.462 0.00 0.00 0.00 5.10
3933 4013 6.401903 GCAGAAATGGATGTATCTAGAATGCG 60.402 42.308 0.00 0.00 0.00 4.73
3934 4014 6.401903 CGCAGAAATGGATGTATCTAGAATGC 60.402 42.308 0.00 0.00 0.00 3.56
3935 4015 6.870439 TCGCAGAAATGGATGTATCTAGAATG 59.130 38.462 0.00 0.00 0.00 2.67
3936 4016 6.870965 GTCGCAGAAATGGATGTATCTAGAAT 59.129 38.462 0.00 0.00 39.69 2.40
3937 4017 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
3938 4018 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
3939 4019 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
3940 4020 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
3941 4021 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
3942 4022 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
3943 4023 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
3944 4024 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
3945 4025 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
3946 4026 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3947 4027 5.220662 CGAATTACTTGTCGCAGAAATGGAT 60.221 40.000 0.00 0.00 39.69 3.41
3948 4028 4.092821 CGAATTACTTGTCGCAGAAATGGA 59.907 41.667 0.00 0.00 39.69 3.41
3949 4029 4.334443 CGAATTACTTGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
3950 4030 4.334443 CCGAATTACTTGTCGCAGAAATG 58.666 43.478 0.00 0.00 39.69 2.32
3951 4031 3.374058 CCCGAATTACTTGTCGCAGAAAT 59.626 43.478 0.00 0.00 39.69 2.17
3952 4032 2.739913 CCCGAATTACTTGTCGCAGAAA 59.260 45.455 0.00 0.00 39.69 2.52
3953 4033 2.343101 CCCGAATTACTTGTCGCAGAA 58.657 47.619 0.00 0.00 39.69 3.02
3954 4034 1.404986 CCCCGAATTACTTGTCGCAGA 60.405 52.381 0.00 0.00 35.93 4.26
3955 4035 1.006832 CCCCGAATTACTTGTCGCAG 58.993 55.000 0.00 0.00 35.93 5.18
3956 4036 1.022451 GCCCCGAATTACTTGTCGCA 61.022 55.000 0.00 0.00 35.93 5.10
3957 4037 1.719709 GCCCCGAATTACTTGTCGC 59.280 57.895 0.00 0.00 35.93 5.19
3958 4038 1.426041 CCGCCCCGAATTACTTGTCG 61.426 60.000 0.00 0.00 37.01 4.35
3959 4039 0.108041 TCCGCCCCGAATTACTTGTC 60.108 55.000 0.00 0.00 0.00 3.18
3960 4040 0.107848 CTCCGCCCCGAATTACTTGT 60.108 55.000 0.00 0.00 0.00 3.16
3961 4041 0.814010 CCTCCGCCCCGAATTACTTG 60.814 60.000 0.00 0.00 0.00 3.16
3962 4042 1.525442 CCTCCGCCCCGAATTACTT 59.475 57.895 0.00 0.00 0.00 2.24
3963 4043 2.440817 CCCTCCGCCCCGAATTACT 61.441 63.158 0.00 0.00 0.00 2.24
3964 4044 2.110420 CCCTCCGCCCCGAATTAC 59.890 66.667 0.00 0.00 0.00 1.89
3965 4045 2.041715 TCCCTCCGCCCCGAATTA 60.042 61.111 0.00 0.00 0.00 1.40
3966 4046 2.884179 TACTCCCTCCGCCCCGAATT 62.884 60.000 0.00 0.00 0.00 2.17
3967 4047 2.674672 ATACTCCCTCCGCCCCGAAT 62.675 60.000 0.00 0.00 0.00 3.34
3968 4048 2.884179 AATACTCCCTCCGCCCCGAA 62.884 60.000 0.00 0.00 0.00 4.30
3969 4049 2.884179 AAATACTCCCTCCGCCCCGA 62.884 60.000 0.00 0.00 0.00 5.14
3970 4050 2.440817 AAATACTCCCTCCGCCCCG 61.441 63.158 0.00 0.00 0.00 5.73
3971 4051 1.148498 CAAATACTCCCTCCGCCCC 59.852 63.158 0.00 0.00 0.00 5.80
3972 4052 0.255033 AACAAATACTCCCTCCGCCC 59.745 55.000 0.00 0.00 0.00 6.13
3973 4053 2.994186 TAACAAATACTCCCTCCGCC 57.006 50.000 0.00 0.00 0.00 6.13
3974 4054 7.707035 CAGATATATAACAAATACTCCCTCCGC 59.293 40.741 0.00 0.00 0.00 5.54
3975 4055 8.967918 TCAGATATATAACAAATACTCCCTCCG 58.032 37.037 0.00 0.00 0.00 4.63
3979 4059 9.668497 GGGTTCAGATATATAACAAATACTCCC 57.332 37.037 0.55 0.00 0.00 4.30
4063 4225 7.408756 CCATAAGAAAAATGGAACCTCATCA 57.591 36.000 0.00 0.00 45.77 3.07
4085 4249 3.304911 TGGAACCTTGTCATGTTTCCA 57.695 42.857 12.14 12.14 0.00 3.53
4290 4455 8.157476 AGGTTAACATCAGAAAACTATCAGTGT 58.843 33.333 8.10 0.00 0.00 3.55
4640 4826 2.161012 AGATGCAATGAAGTGAACAGCG 59.839 45.455 0.00 0.00 0.00 5.18
4817 5005 6.297694 GCTGGAGCTTGTTAGAAATGATAG 57.702 41.667 0.00 0.00 38.21 2.08
4914 5102 3.327757 TGTTGGCAGACTCTAGGTTTGAT 59.672 43.478 6.20 0.00 32.50 2.57
5119 5339 4.081752 AGTTGGCACTGAAATTGACAAACA 60.082 37.500 0.00 0.00 43.67 2.83
5648 5869 2.099756 TGACCATCTGATGTGTAGCGAG 59.900 50.000 15.95 1.44 0.00 5.03
5808 6029 0.991355 AGGTCCTGTCCCAAACACCA 60.991 55.000 0.00 0.00 33.24 4.17
5913 6134 1.600916 GTGACACACAAGAGGCCCC 60.601 63.158 0.00 0.00 34.08 5.80
6014 6235 9.825972 CTTTTGTACACATAAAACAGGATACAG 57.174 33.333 0.00 0.00 41.41 2.74
6272 6494 2.147150 GGAGACAAACTTCTCAGGTGC 58.853 52.381 2.73 0.00 43.49 5.01
6527 6756 2.753043 CCCTGCATGACACCTGGC 60.753 66.667 0.00 0.00 0.00 4.85
6528 6757 2.753043 GCCCTGCATGACACCTGG 60.753 66.667 0.00 0.00 0.00 4.45
6529 6758 3.129502 CGCCCTGCATGACACCTG 61.130 66.667 0.00 0.00 0.00 4.00
6530 6759 4.415150 CCGCCCTGCATGACACCT 62.415 66.667 0.00 0.00 0.00 4.00
6532 6761 3.918253 TTCCCGCCCTGCATGACAC 62.918 63.158 0.00 0.00 0.00 3.67
6533 6762 3.203086 TTTCCCGCCCTGCATGACA 62.203 57.895 0.00 0.00 0.00 3.58
6534 6763 2.361104 TTTCCCGCCCTGCATGAC 60.361 61.111 0.00 0.00 0.00 3.06
6538 6767 0.913205 TAATAGTTTCCCGCCCTGCA 59.087 50.000 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.