Multiple sequence alignment - TraesCS7A01G219300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G219300 chr7A 100.000 5036 0 0 1 5036 186545246 186540211 0.000000e+00 9300.0
1 TraesCS7A01G219300 chr7B 94.162 2107 95 12 2668 4761 153424964 153427055 0.000000e+00 3184.0
2 TraesCS7A01G219300 chr7B 91.436 759 43 10 1456 2205 153424033 153424778 0.000000e+00 1022.0
3 TraesCS7A01G219300 chr7B 91.774 620 26 4 758 1352 153423111 153423730 0.000000e+00 839.0
4 TraesCS7A01G219300 chr7B 82.774 685 100 14 1 672 396047515 396046836 3.360000e-166 595.0
5 TraesCS7A01G219300 chr7B 95.213 188 9 0 4821 5008 153427061 153427248 1.060000e-76 298.0
6 TraesCS7A01G219300 chr7B 88.542 192 21 1 2295 2486 731129223 731129413 1.090000e-56 231.0
7 TraesCS7A01G219300 chr7B 87.755 147 18 0 4477 4623 427397781 427397927 6.700000e-39 172.0
8 TraesCS7A01G219300 chr7B 97.727 44 1 0 2255 2298 153424778 153424821 5.410000e-10 76.8
9 TraesCS7A01G219300 chr7D 93.357 1656 65 15 677 2296 184163935 184165581 0.000000e+00 2407.0
10 TraesCS7A01G219300 chr7D 93.555 1505 72 10 2685 4189 184165632 184167111 0.000000e+00 2218.0
11 TraesCS7A01G219300 chr7D 93.837 503 25 3 4512 5008 184167593 184168095 0.000000e+00 752.0
12 TraesCS7A01G219300 chr7D 91.139 316 14 9 4211 4521 184167106 184167412 2.800000e-112 416.0
13 TraesCS7A01G219300 chr7D 89.855 138 14 0 4488 4625 264084394 264084257 1.440000e-40 178.0
14 TraesCS7A01G219300 chr7D 80.220 91 7 7 2488 2567 57596390 57596300 1.960000e-04 58.4
15 TraesCS7A01G219300 chr4A 97.941 680 6 3 1 672 490608087 490607408 0.000000e+00 1171.0
16 TraesCS7A01G219300 chr6A 97.661 684 8 3 1 676 49095948 49095265 0.000000e+00 1168.0
17 TraesCS7A01G219300 chr6A 93.314 673 36 7 1 664 593736498 593735826 0.000000e+00 985.0
18 TraesCS7A01G219300 chr6A 79.258 1321 239 29 2734 4032 514892960 514894267 0.000000e+00 889.0
19 TraesCS7A01G219300 chr5A 96.970 693 12 4 1 684 313304613 313305305 0.000000e+00 1155.0
20 TraesCS7A01G219300 chr6B 79.697 1320 232 29 2734 4032 559039981 559038677 0.000000e+00 920.0
21 TraesCS7A01G219300 chr6B 82.164 684 108 12 1 672 663236645 663237326 4.370000e-160 575.0
22 TraesCS7A01G219300 chr6B 83.513 279 39 6 2280 2554 718981422 718981697 2.330000e-63 254.0
23 TraesCS7A01G219300 chr6B 82.890 263 36 6 2306 2567 54780131 54780385 1.410000e-55 228.0
24 TraesCS7A01G219300 chr6D 79.195 1317 244 25 2734 4032 372880315 372881619 0.000000e+00 887.0
25 TraesCS7A01G219300 chr1B 83.478 690 102 9 1 679 42061181 42060493 2.560000e-177 632.0
26 TraesCS7A01G219300 chr2A 83.261 687 101 10 1 676 678138565 678139248 1.990000e-173 619.0
27 TraesCS7A01G219300 chr2A 82.456 684 106 12 1 672 718920496 718919815 2.020000e-163 586.0
28 TraesCS7A01G219300 chr3A 82.456 684 105 11 1 672 601336233 601335553 7.270000e-163 584.0
29 TraesCS7A01G219300 chr3A 88.344 163 13 4 4477 4634 208033820 208033659 1.850000e-44 191.0
30 TraesCS7A01G219300 chrUn 83.942 274 34 6 2295 2567 75380853 75381117 2.330000e-63 254.0
31 TraesCS7A01G219300 chr4B 83.398 259 34 6 2309 2565 576405256 576405507 1.090000e-56 231.0
32 TraesCS7A01G219300 chr4B 87.958 191 19 3 2296 2485 480535626 480535813 6.560000e-54 222.0
33 TraesCS7A01G219300 chr4B 87.565 193 20 2 2295 2487 670807721 670807909 2.360000e-53 220.0
34 TraesCS7A01G219300 chr4B 88.742 151 17 0 4473 4623 106227565 106227415 8.610000e-43 185.0
35 TraesCS7A01G219300 chr4B 88.514 148 17 0 4476 4623 366930147 366930294 4.010000e-41 180.0
36 TraesCS7A01G219300 chr3B 87.692 195 22 1 2292 2486 131077394 131077202 5.070000e-55 226.0
37 TraesCS7A01G219300 chr1A 87.895 190 23 0 2292 2481 127830883 127830694 1.820000e-54 224.0
38 TraesCS7A01G219300 chr3D 90.667 150 14 0 4474 4623 441388822 441388673 3.070000e-47 200.0
39 TraesCS7A01G219300 chr2B 91.367 139 12 0 4483 4621 545266849 545266711 1.850000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G219300 chr7A 186540211 186545246 5035 True 9300.00 9300 100.0000 1 5036 1 chr7A.!!$R1 5035
1 TraesCS7A01G219300 chr7B 153423111 153427248 4137 False 1083.96 3184 94.0624 758 5008 5 chr7B.!!$F3 4250
2 TraesCS7A01G219300 chr7B 396046836 396047515 679 True 595.00 595 82.7740 1 672 1 chr7B.!!$R1 671
3 TraesCS7A01G219300 chr7D 184163935 184168095 4160 False 1448.25 2407 92.9720 677 5008 4 chr7D.!!$F1 4331
4 TraesCS7A01G219300 chr4A 490607408 490608087 679 True 1171.00 1171 97.9410 1 672 1 chr4A.!!$R1 671
5 TraesCS7A01G219300 chr6A 49095265 49095948 683 True 1168.00 1168 97.6610 1 676 1 chr6A.!!$R1 675
6 TraesCS7A01G219300 chr6A 593735826 593736498 672 True 985.00 985 93.3140 1 664 1 chr6A.!!$R2 663
7 TraesCS7A01G219300 chr6A 514892960 514894267 1307 False 889.00 889 79.2580 2734 4032 1 chr6A.!!$F1 1298
8 TraesCS7A01G219300 chr5A 313304613 313305305 692 False 1155.00 1155 96.9700 1 684 1 chr5A.!!$F1 683
9 TraesCS7A01G219300 chr6B 559038677 559039981 1304 True 920.00 920 79.6970 2734 4032 1 chr6B.!!$R1 1298
10 TraesCS7A01G219300 chr6B 663236645 663237326 681 False 575.00 575 82.1640 1 672 1 chr6B.!!$F2 671
11 TraesCS7A01G219300 chr6D 372880315 372881619 1304 False 887.00 887 79.1950 2734 4032 1 chr6D.!!$F1 1298
12 TraesCS7A01G219300 chr1B 42060493 42061181 688 True 632.00 632 83.4780 1 679 1 chr1B.!!$R1 678
13 TraesCS7A01G219300 chr2A 678138565 678139248 683 False 619.00 619 83.2610 1 676 1 chr2A.!!$F1 675
14 TraesCS7A01G219300 chr2A 718919815 718920496 681 True 586.00 586 82.4560 1 672 1 chr2A.!!$R1 671
15 TraesCS7A01G219300 chr3A 601335553 601336233 680 True 584.00 584 82.4560 1 672 1 chr3A.!!$R2 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 317 0.179158 TCGGTCATCGCGAAATTCGA 60.179 50.000 20.38 17.56 42.51 3.71 F
860 875 1.066430 TGGGTGGATAAACTCAGACGC 60.066 52.381 0.00 0.00 0.00 5.19 F
2414 2722 0.036732 TCAAAAGACTGAGCCGGCAT 59.963 50.000 31.54 14.28 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1917 0.033405 TACGGGAAGGGAGAGTCAGG 60.033 60.0 0.00 0.00 0.0 3.86 R
2475 2783 0.036105 ACTCGCATTGCATCCAGTCA 60.036 50.0 9.69 0.00 0.0 3.41 R
4062 4455 0.182299 TTGGGTCCATGCATGCGATA 59.818 50.0 21.69 3.25 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
314 317 0.179158 TCGGTCATCGCGAAATTCGA 60.179 50.000 20.38 17.56 42.51 3.71
409 413 1.691482 CCGGAGTCCCCAATAGGAAGA 60.691 57.143 2.80 0.00 37.78 2.87
410 414 1.689273 CGGAGTCCCCAATAGGAAGAG 59.311 57.143 2.80 0.00 37.78 2.85
716 730 3.803778 AGCAAAAGCAGTGCACAAATTAC 59.196 39.130 21.04 1.10 44.74 1.89
731 745 6.655062 CACAAATTACGCACTTAACTGAGAA 58.345 36.000 0.00 0.00 0.00 2.87
781 796 9.995379 CATTACTCGTCAATAATTCAGTAATCG 57.005 33.333 0.00 0.00 35.72 3.34
860 875 1.066430 TGGGTGGATAAACTCAGACGC 60.066 52.381 0.00 0.00 0.00 5.19
1007 1031 2.040544 CCCGCAACACCATGGAGTC 61.041 63.158 21.47 4.75 0.00 3.36
1049 1088 2.765699 GCTCTCTCATCTTCCCTCTTGT 59.234 50.000 0.00 0.00 0.00 3.16
1050 1089 3.430651 GCTCTCTCATCTTCCCTCTTGTG 60.431 52.174 0.00 0.00 0.00 3.33
1209 1248 7.657761 AGGTTTTCATCATCGTTAGATACCATC 59.342 37.037 0.00 0.00 34.85 3.51
1217 1256 4.109766 TCGTTAGATACCATCTTGTTGCG 58.890 43.478 0.00 0.00 40.76 4.85
1308 1356 2.239400 TCAGGGCTGGATACTATGTCG 58.761 52.381 0.00 0.00 37.61 4.35
1311 1359 2.628657 AGGGCTGGATACTATGTCGTTC 59.371 50.000 0.00 0.00 37.61 3.95
1322 1370 2.681152 ATGTCGTTCGTTCTTTTGGC 57.319 45.000 0.00 0.00 0.00 4.52
1393 1653 1.138859 TCACTAACCATGGATCGCAGG 59.861 52.381 21.47 1.46 0.00 4.85
1399 1659 2.184830 CATGGATCGCAGGTGCCAG 61.185 63.158 0.00 0.00 37.91 4.85
1527 1788 3.496130 CCAGCGAACCAGATAATTAGCAG 59.504 47.826 3.17 0.00 0.00 4.24
1533 1794 7.038659 GCGAACCAGATAATTAGCAGAGATAT 58.961 38.462 3.17 0.00 0.00 1.63
1539 1800 7.490725 CCAGATAATTAGCAGAGATATCAACCG 59.509 40.741 5.32 0.00 0.00 4.44
1546 1807 4.100189 AGCAGAGATATCAACCGTTAAGCT 59.900 41.667 5.32 0.00 0.00 3.74
1547 1808 5.302059 AGCAGAGATATCAACCGTTAAGCTA 59.698 40.000 5.32 0.00 0.00 3.32
1548 1809 5.402867 GCAGAGATATCAACCGTTAAGCTAC 59.597 44.000 5.32 0.00 0.00 3.58
1549 1810 6.504398 CAGAGATATCAACCGTTAAGCTACA 58.496 40.000 5.32 0.00 0.00 2.74
1550 1811 6.978659 CAGAGATATCAACCGTTAAGCTACAA 59.021 38.462 5.32 0.00 0.00 2.41
1551 1812 7.168302 CAGAGATATCAACCGTTAAGCTACAAG 59.832 40.741 5.32 0.00 0.00 3.16
1552 1813 7.068348 AGAGATATCAACCGTTAAGCTACAAGA 59.932 37.037 5.32 0.00 0.00 3.02
1553 1814 7.553334 AGATATCAACCGTTAAGCTACAAGAA 58.447 34.615 5.32 0.00 0.00 2.52
1554 1815 8.038944 AGATATCAACCGTTAAGCTACAAGAAA 58.961 33.333 5.32 0.00 0.00 2.52
1555 1816 5.917541 TCAACCGTTAAGCTACAAGAAAG 57.082 39.130 0.00 0.00 0.00 2.62
1646 1917 3.579626 GACGCTTGCGTGAACCAGC 62.580 63.158 25.34 5.23 0.00 4.85
1962 2253 7.612633 GGTGACAAAATGGATAGGGTTTTAGTA 59.387 37.037 0.00 0.00 0.00 1.82
1963 2254 8.456471 GTGACAAAATGGATAGGGTTTTAGTAC 58.544 37.037 0.00 0.00 0.00 2.73
1964 2255 8.164733 TGACAAAATGGATAGGGTTTTAGTACA 58.835 33.333 0.00 0.00 0.00 2.90
1996 2297 7.817418 AGGCGTGTATAATTGATAAAATGGT 57.183 32.000 0.00 0.00 0.00 3.55
2011 2312 8.637099 TGATAAAATGGTTTGTGACAGAATTCA 58.363 29.630 8.44 0.00 0.00 2.57
2169 2477 2.853210 GTCATGGTCGTGTGCGTG 59.147 61.111 0.00 0.00 39.49 5.34
2251 2559 0.833287 ACCGGTGAGCTAGCAATCAT 59.167 50.000 18.83 0.00 0.00 2.45
2252 2560 1.202580 ACCGGTGAGCTAGCAATCATC 60.203 52.381 18.83 12.15 0.00 2.92
2292 2600 2.494870 GCTCCATCTGAAAGCAAACCAT 59.505 45.455 5.50 0.00 36.06 3.55
2293 2601 3.696051 GCTCCATCTGAAAGCAAACCATA 59.304 43.478 5.50 0.00 36.06 2.74
2294 2602 4.340381 GCTCCATCTGAAAGCAAACCATAT 59.660 41.667 5.50 0.00 36.06 1.78
2295 2603 5.163478 GCTCCATCTGAAAGCAAACCATATT 60.163 40.000 5.50 0.00 36.06 1.28
2296 2604 6.628844 GCTCCATCTGAAAGCAAACCATATTT 60.629 38.462 5.50 0.00 36.06 1.40
2297 2605 7.243604 TCCATCTGAAAGCAAACCATATTTT 57.756 32.000 0.00 0.00 0.00 1.82
2298 2606 7.678837 TCCATCTGAAAGCAAACCATATTTTT 58.321 30.769 0.00 0.00 0.00 1.94
2327 2635 5.968387 AATATTAGTACAGACACAAGCGC 57.032 39.130 0.00 0.00 0.00 5.92
2328 2636 3.594603 ATTAGTACAGACACAAGCGCT 57.405 42.857 2.64 2.64 0.00 5.92
2329 2637 2.631418 TAGTACAGACACAAGCGCTC 57.369 50.000 12.06 0.00 0.00 5.03
2330 2638 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
2331 2639 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
2332 2640 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
2333 2641 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
2334 2642 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
2335 2643 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
2336 2644 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
2337 2645 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
2338 2646 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
2342 2650 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
2343 2651 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
2344 2652 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
2345 2653 2.185262 CGCTCATATACACGCGCATAT 58.815 47.619 5.73 7.02 39.11 1.78
2346 2654 3.359654 CGCTCATATACACGCGCATATA 58.640 45.455 5.73 9.29 39.11 0.86
2347 2655 3.177838 CGCTCATATACACGCGCATATAC 59.822 47.826 5.73 0.29 39.11 1.47
2348 2656 4.352039 GCTCATATACACGCGCATATACT 58.648 43.478 5.73 0.00 0.00 2.12
2349 2657 4.438145 GCTCATATACACGCGCATATACTC 59.562 45.833 5.73 0.00 0.00 2.59
2350 2658 5.554822 TCATATACACGCGCATATACTCA 57.445 39.130 5.73 0.00 0.00 3.41
2351 2659 6.131544 TCATATACACGCGCATATACTCAT 57.868 37.500 5.73 0.00 0.00 2.90
2352 2660 6.199393 TCATATACACGCGCATATACTCATC 58.801 40.000 5.73 0.00 0.00 2.92
2353 2661 2.065993 ACACGCGCATATACTCATCC 57.934 50.000 5.73 0.00 0.00 3.51
2354 2662 1.613925 ACACGCGCATATACTCATCCT 59.386 47.619 5.73 0.00 0.00 3.24
2355 2663 2.035961 ACACGCGCATATACTCATCCTT 59.964 45.455 5.73 0.00 0.00 3.36
2356 2664 3.254903 ACACGCGCATATACTCATCCTTA 59.745 43.478 5.73 0.00 0.00 2.69
2357 2665 4.082190 ACACGCGCATATACTCATCCTTAT 60.082 41.667 5.73 0.00 0.00 1.73
2358 2666 5.124936 ACACGCGCATATACTCATCCTTATA 59.875 40.000 5.73 0.00 0.00 0.98
2359 2667 6.033966 CACGCGCATATACTCATCCTTATAA 58.966 40.000 5.73 0.00 0.00 0.98
2360 2668 6.530181 CACGCGCATATACTCATCCTTATAAA 59.470 38.462 5.73 0.00 0.00 1.40
2361 2669 6.530534 ACGCGCATATACTCATCCTTATAAAC 59.469 38.462 5.73 0.00 0.00 2.01
2362 2670 6.291112 CGCGCATATACTCATCCTTATAAACG 60.291 42.308 8.75 0.00 0.00 3.60
2363 2671 6.508088 GCGCATATACTCATCCTTATAAACGC 60.508 42.308 0.30 0.00 34.37 4.84
2364 2672 6.530181 CGCATATACTCATCCTTATAAACGCA 59.470 38.462 0.00 0.00 0.00 5.24
2365 2673 7.462856 CGCATATACTCATCCTTATAAACGCAC 60.463 40.741 0.00 0.00 0.00 5.34
2366 2674 7.330946 GCATATACTCATCCTTATAAACGCACA 59.669 37.037 0.00 0.00 0.00 4.57
2367 2675 8.648097 CATATACTCATCCTTATAAACGCACAC 58.352 37.037 0.00 0.00 0.00 3.82
2368 2676 4.827692 ACTCATCCTTATAAACGCACACA 58.172 39.130 0.00 0.00 0.00 3.72
2369 2677 4.630069 ACTCATCCTTATAAACGCACACAC 59.370 41.667 0.00 0.00 0.00 3.82
2370 2678 3.615056 TCATCCTTATAAACGCACACACG 59.385 43.478 0.00 0.00 39.50 4.49
2371 2679 1.727880 TCCTTATAAACGCACACACGC 59.272 47.619 0.00 0.00 36.19 5.34
2372 2680 1.461512 CCTTATAAACGCACACACGCA 59.538 47.619 0.00 0.00 36.19 5.24
2373 2681 2.492001 CTTATAAACGCACACACGCAC 58.508 47.619 0.00 0.00 36.19 5.34
2374 2682 1.499049 TATAAACGCACACACGCACA 58.501 45.000 0.00 0.00 36.19 4.57
2375 2683 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
2376 2684 2.037913 TAAACGCACACACGCACACC 62.038 55.000 0.00 0.00 36.19 4.16
2379 2687 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
2380 2688 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
2381 2689 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
2382 2690 2.138179 ACACACGCACACCCTACCT 61.138 57.895 0.00 0.00 0.00 3.08
2383 2691 1.070786 CACACGCACACCCTACCTT 59.929 57.895 0.00 0.00 0.00 3.50
2384 2692 0.534203 CACACGCACACCCTACCTTT 60.534 55.000 0.00 0.00 0.00 3.11
2385 2693 1.050204 ACACGCACACCCTACCTTTA 58.950 50.000 0.00 0.00 0.00 1.85
2386 2694 1.626825 ACACGCACACCCTACCTTTAT 59.373 47.619 0.00 0.00 0.00 1.40
2387 2695 2.006888 CACGCACACCCTACCTTTATG 58.993 52.381 0.00 0.00 0.00 1.90
2388 2696 1.903860 ACGCACACCCTACCTTTATGA 59.096 47.619 0.00 0.00 0.00 2.15
2389 2697 2.303600 ACGCACACCCTACCTTTATGAA 59.696 45.455 0.00 0.00 0.00 2.57
2390 2698 2.676342 CGCACACCCTACCTTTATGAAC 59.324 50.000 0.00 0.00 0.00 3.18
2391 2699 3.681593 GCACACCCTACCTTTATGAACA 58.318 45.455 0.00 0.00 0.00 3.18
2392 2700 3.439129 GCACACCCTACCTTTATGAACAC 59.561 47.826 0.00 0.00 0.00 3.32
2393 2701 4.007659 CACACCCTACCTTTATGAACACC 58.992 47.826 0.00 0.00 0.00 4.16
2394 2702 3.914435 ACACCCTACCTTTATGAACACCT 59.086 43.478 0.00 0.00 0.00 4.00
2395 2703 4.352893 ACACCCTACCTTTATGAACACCTT 59.647 41.667 0.00 0.00 0.00 3.50
2396 2704 4.941873 CACCCTACCTTTATGAACACCTTC 59.058 45.833 0.00 0.00 0.00 3.46
2397 2705 4.600111 ACCCTACCTTTATGAACACCTTCA 59.400 41.667 0.00 0.00 40.77 3.02
2398 2706 5.073965 ACCCTACCTTTATGAACACCTTCAA 59.926 40.000 0.00 0.00 39.90 2.69
2399 2707 6.007703 CCCTACCTTTATGAACACCTTCAAA 58.992 40.000 0.00 0.00 39.90 2.69
2400 2708 6.492087 CCCTACCTTTATGAACACCTTCAAAA 59.508 38.462 0.00 0.00 39.90 2.44
2401 2709 7.309194 CCCTACCTTTATGAACACCTTCAAAAG 60.309 40.741 0.00 0.00 39.90 2.27
2402 2710 7.447238 CCTACCTTTATGAACACCTTCAAAAGA 59.553 37.037 13.68 0.00 39.90 2.52
2403 2711 7.039313 ACCTTTATGAACACCTTCAAAAGAC 57.961 36.000 13.68 0.00 39.90 3.01
2404 2712 6.833933 ACCTTTATGAACACCTTCAAAAGACT 59.166 34.615 13.68 0.00 39.90 3.24
2405 2713 7.141363 CCTTTATGAACACCTTCAAAAGACTG 58.859 38.462 13.68 0.00 39.90 3.51
2406 2714 7.013274 CCTTTATGAACACCTTCAAAAGACTGA 59.987 37.037 13.68 0.00 39.90 3.41
2407 2715 7.496529 TTATGAACACCTTCAAAAGACTGAG 57.503 36.000 0.00 0.00 39.90 3.35
2408 2716 3.627577 TGAACACCTTCAAAAGACTGAGC 59.372 43.478 0.00 0.00 33.20 4.26
2409 2717 2.576615 ACACCTTCAAAAGACTGAGCC 58.423 47.619 0.00 0.00 0.00 4.70
2410 2718 1.532868 CACCTTCAAAAGACTGAGCCG 59.467 52.381 0.00 0.00 0.00 5.52
2411 2719 1.160137 CCTTCAAAAGACTGAGCCGG 58.840 55.000 0.00 0.00 0.00 6.13
2412 2720 0.519077 CTTCAAAAGACTGAGCCGGC 59.481 55.000 21.89 21.89 0.00 6.13
2413 2721 0.179032 TTCAAAAGACTGAGCCGGCA 60.179 50.000 31.54 7.98 0.00 5.69
2414 2722 0.036732 TCAAAAGACTGAGCCGGCAT 59.963 50.000 31.54 14.28 0.00 4.40
2415 2723 1.277842 TCAAAAGACTGAGCCGGCATA 59.722 47.619 31.54 16.21 0.00 3.14
2416 2724 2.092968 TCAAAAGACTGAGCCGGCATAT 60.093 45.455 31.54 8.11 0.00 1.78
2417 2725 2.246719 AAAGACTGAGCCGGCATATC 57.753 50.000 31.54 18.63 0.00 1.63
2418 2726 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
2419 2727 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
2420 2728 1.001746 AGACTGAGCCGGCATATCATG 59.998 52.381 31.54 18.07 0.00 3.07
2421 2729 0.761187 ACTGAGCCGGCATATCATGT 59.239 50.000 31.54 18.66 0.00 3.21
2422 2730 1.141657 ACTGAGCCGGCATATCATGTT 59.858 47.619 31.54 3.33 0.00 2.71
2423 2731 1.534163 CTGAGCCGGCATATCATGTTG 59.466 52.381 31.54 7.95 0.00 3.33
2424 2732 1.140652 TGAGCCGGCATATCATGTTGA 59.859 47.619 31.54 0.00 0.00 3.18
2425 2733 1.802960 GAGCCGGCATATCATGTTGAG 59.197 52.381 31.54 0.00 0.00 3.02
2426 2734 1.417517 AGCCGGCATATCATGTTGAGA 59.582 47.619 31.54 0.00 0.00 3.27
2427 2735 2.039480 AGCCGGCATATCATGTTGAGAT 59.961 45.455 31.54 0.00 0.00 2.75
2428 2736 2.816087 GCCGGCATATCATGTTGAGATT 59.184 45.455 24.80 0.00 0.00 2.40
2429 2737 3.254166 GCCGGCATATCATGTTGAGATTT 59.746 43.478 24.80 0.00 0.00 2.17
2430 2738 4.455533 GCCGGCATATCATGTTGAGATTTA 59.544 41.667 24.80 0.00 0.00 1.40
2431 2739 5.617751 GCCGGCATATCATGTTGAGATTTAC 60.618 44.000 24.80 0.00 0.00 2.01
2432 2740 5.469760 CCGGCATATCATGTTGAGATTTACA 59.530 40.000 0.00 0.00 0.00 2.41
2433 2741 6.017192 CCGGCATATCATGTTGAGATTTACAA 60.017 38.462 0.00 0.00 0.00 2.41
2434 2742 7.416817 CGGCATATCATGTTGAGATTTACAAA 58.583 34.615 0.00 0.00 0.00 2.83
2435 2743 7.588854 CGGCATATCATGTTGAGATTTACAAAG 59.411 37.037 0.00 0.00 0.00 2.77
2436 2744 8.408601 GGCATATCATGTTGAGATTTACAAAGT 58.591 33.333 0.00 0.00 0.00 2.66
2437 2745 9.443283 GCATATCATGTTGAGATTTACAAAGTC 57.557 33.333 0.00 0.00 0.00 3.01
2441 2749 8.620116 TCATGTTGAGATTTACAAAGTCATCA 57.380 30.769 0.00 0.00 0.00 3.07
2442 2750 9.234827 TCATGTTGAGATTTACAAAGTCATCAT 57.765 29.630 0.00 7.17 31.78 2.45
2445 2753 9.942850 TGTTGAGATTTACAAAGTCATCATAGA 57.057 29.630 0.00 0.00 0.00 1.98
2447 2755 8.634475 TGAGATTTACAAAGTCATCATAGACG 57.366 34.615 0.00 0.00 43.24 4.18
2448 2756 8.251026 TGAGATTTACAAAGTCATCATAGACGT 58.749 33.333 0.00 0.00 43.24 4.34
2449 2757 8.635877 AGATTTACAAAGTCATCATAGACGTC 57.364 34.615 7.70 7.70 43.24 4.34
2450 2758 8.470805 AGATTTACAAAGTCATCATAGACGTCT 58.529 33.333 23.66 23.66 43.24 4.18
2451 2759 8.635877 ATTTACAAAGTCATCATAGACGTCTC 57.364 34.615 23.89 5.63 43.24 3.36
2452 2760 4.663166 ACAAAGTCATCATAGACGTCTCG 58.337 43.478 23.89 14.89 43.24 4.04
2453 2761 4.156190 ACAAAGTCATCATAGACGTCTCGT 59.844 41.667 23.89 9.61 45.10 4.18
2479 2787 2.964343 GGGAACGTCTCCTCTGACT 58.036 57.895 13.94 0.00 44.68 3.41
2480 2788 0.528470 GGGAACGTCTCCTCTGACTG 59.472 60.000 13.94 0.00 44.68 3.51
2481 2789 0.528470 GGAACGTCTCCTCTGACTGG 59.472 60.000 8.87 0.00 41.61 4.00
2482 2790 1.535833 GAACGTCTCCTCTGACTGGA 58.464 55.000 0.00 0.00 35.00 3.86
2483 2791 2.096248 GAACGTCTCCTCTGACTGGAT 58.904 52.381 0.00 0.00 35.00 3.41
2484 2792 1.468985 ACGTCTCCTCTGACTGGATG 58.531 55.000 0.00 0.00 35.00 3.51
2485 2793 0.102120 CGTCTCCTCTGACTGGATGC 59.898 60.000 0.00 0.00 35.00 3.91
2486 2794 1.189752 GTCTCCTCTGACTGGATGCA 58.810 55.000 0.00 0.00 34.39 3.96
2487 2795 1.552337 GTCTCCTCTGACTGGATGCAA 59.448 52.381 0.00 0.00 34.39 4.08
2488 2796 2.170187 GTCTCCTCTGACTGGATGCAAT 59.830 50.000 0.00 0.00 34.39 3.56
2489 2797 2.169978 TCTCCTCTGACTGGATGCAATG 59.830 50.000 0.00 0.00 32.56 2.82
2490 2798 1.022735 CCTCTGACTGGATGCAATGC 58.977 55.000 0.00 0.00 33.97 3.56
2491 2799 0.656259 CTCTGACTGGATGCAATGCG 59.344 55.000 0.00 0.00 37.56 4.73
2492 2800 0.249955 TCTGACTGGATGCAATGCGA 59.750 50.000 0.00 0.00 37.56 5.10
2493 2801 0.656259 CTGACTGGATGCAATGCGAG 59.344 55.000 0.00 0.00 37.56 5.03
2494 2802 0.036105 TGACTGGATGCAATGCGAGT 60.036 50.000 0.00 0.00 37.56 4.18
2495 2803 1.206849 TGACTGGATGCAATGCGAGTA 59.793 47.619 0.00 0.00 37.56 2.59
2496 2804 2.158914 TGACTGGATGCAATGCGAGTAT 60.159 45.455 0.00 0.00 37.56 2.12
2497 2805 2.478134 GACTGGATGCAATGCGAGTATC 59.522 50.000 0.00 0.00 37.56 2.24
2498 2806 1.802960 CTGGATGCAATGCGAGTATCC 59.197 52.381 13.48 13.48 45.20 2.59
2499 2807 0.792640 GGATGCAATGCGAGTATCCG 59.207 55.000 6.56 0.00 38.25 4.18
2500 2808 0.792640 GATGCAATGCGAGTATCCGG 59.207 55.000 0.00 0.00 0.00 5.14
2501 2809 0.392706 ATGCAATGCGAGTATCCGGA 59.607 50.000 6.61 6.61 0.00 5.14
2502 2810 0.392706 TGCAATGCGAGTATCCGGAT 59.607 50.000 22.95 22.95 42.29 4.18
2504 2812 1.873591 GCAATGCGAGTATCCGGATTT 59.126 47.619 24.71 11.79 45.82 2.17
2505 2813 3.064207 GCAATGCGAGTATCCGGATTTA 58.936 45.455 24.71 1.57 45.82 1.40
2506 2814 3.496884 GCAATGCGAGTATCCGGATTTAA 59.503 43.478 24.71 0.65 45.82 1.52
2507 2815 4.024387 GCAATGCGAGTATCCGGATTTAAA 60.024 41.667 24.71 0.20 45.82 1.52
2508 2816 5.440685 CAATGCGAGTATCCGGATTTAAAC 58.559 41.667 24.71 14.77 45.82 2.01
2509 2817 3.460103 TGCGAGTATCCGGATTTAAACC 58.540 45.455 24.71 7.91 0.00 3.27
2510 2818 2.804527 GCGAGTATCCGGATTTAAACCC 59.195 50.000 24.71 4.24 0.00 4.11
2511 2819 3.493873 GCGAGTATCCGGATTTAAACCCT 60.494 47.826 24.71 7.24 0.00 4.34
2512 2820 4.056050 CGAGTATCCGGATTTAAACCCTG 58.944 47.826 24.71 3.54 0.00 4.45
2513 2821 4.202182 CGAGTATCCGGATTTAAACCCTGA 60.202 45.833 24.71 0.00 0.00 3.86
2514 2822 5.510861 CGAGTATCCGGATTTAAACCCTGAT 60.511 44.000 24.71 10.14 0.00 2.90
2515 2823 5.621193 AGTATCCGGATTTAAACCCTGATG 58.379 41.667 24.71 0.00 0.00 3.07
2516 2824 3.290948 TCCGGATTTAAACCCTGATGG 57.709 47.619 0.00 0.00 41.37 3.51
2543 2851 5.725325 GGATACCATACAGTCCCTCTAAC 57.275 47.826 0.00 0.00 0.00 2.34
2544 2852 4.527427 GGATACCATACAGTCCCTCTAACC 59.473 50.000 0.00 0.00 0.00 2.85
2545 2853 3.484953 ACCATACAGTCCCTCTAACCA 57.515 47.619 0.00 0.00 0.00 3.67
2546 2854 4.008916 ACCATACAGTCCCTCTAACCAT 57.991 45.455 0.00 0.00 0.00 3.55
2547 2855 4.371681 ACCATACAGTCCCTCTAACCATT 58.628 43.478 0.00 0.00 0.00 3.16
2548 2856 4.164221 ACCATACAGTCCCTCTAACCATTG 59.836 45.833 0.00 0.00 0.00 2.82
2549 2857 4.408921 CCATACAGTCCCTCTAACCATTGA 59.591 45.833 0.00 0.00 0.00 2.57
2550 2858 5.104527 CCATACAGTCCCTCTAACCATTGAA 60.105 44.000 0.00 0.00 0.00 2.69
2551 2859 4.287766 ACAGTCCCTCTAACCATTGAAC 57.712 45.455 0.00 0.00 0.00 3.18
2552 2860 3.009143 ACAGTCCCTCTAACCATTGAACC 59.991 47.826 0.00 0.00 0.00 3.62
2553 2861 3.009033 CAGTCCCTCTAACCATTGAACCA 59.991 47.826 0.00 0.00 0.00 3.67
2554 2862 3.852578 AGTCCCTCTAACCATTGAACCAT 59.147 43.478 0.00 0.00 0.00 3.55
2555 2863 5.036916 AGTCCCTCTAACCATTGAACCATA 58.963 41.667 0.00 0.00 0.00 2.74
2556 2864 5.131142 AGTCCCTCTAACCATTGAACCATAG 59.869 44.000 0.00 0.00 0.00 2.23
2557 2865 4.412199 TCCCTCTAACCATTGAACCATAGG 59.588 45.833 0.00 0.00 0.00 2.57
2558 2866 4.166144 CCCTCTAACCATTGAACCATAGGT 59.834 45.833 0.00 0.00 37.65 3.08
2560 2868 5.590259 CCTCTAACCATTGAACCATAGGTTG 59.410 44.000 6.10 0.00 46.95 3.77
2561 2869 5.505780 TCTAACCATTGAACCATAGGTTGG 58.494 41.667 6.10 4.69 46.95 3.77
2568 2876 4.924019 CCATAGGTTGGTTCGCGA 57.076 55.556 3.71 3.71 40.99 5.87
2569 2877 3.146783 CCATAGGTTGGTTCGCGAA 57.853 52.632 19.38 19.38 40.99 4.70
2570 2878 1.444836 CCATAGGTTGGTTCGCGAAA 58.555 50.000 25.24 6.04 40.99 3.46
2571 2879 1.396996 CCATAGGTTGGTTCGCGAAAG 59.603 52.381 25.24 5.01 40.99 2.62
2592 2902 4.067896 AGCAAACCACATTGAGTAGTCAG 58.932 43.478 0.00 0.00 32.98 3.51
2597 2907 6.619801 AACCACATTGAGTAGTCAGAAAAC 57.380 37.500 0.00 0.00 32.98 2.43
2603 2913 6.262944 ACATTGAGTAGTCAGAAAACATGCAA 59.737 34.615 0.00 0.00 32.98 4.08
2637 2957 7.246171 TCTTAGCAAGAGTAGAGTTGGAAAT 57.754 36.000 0.00 0.00 32.71 2.17
2638 2958 7.680730 TCTTAGCAAGAGTAGAGTTGGAAATT 58.319 34.615 0.00 0.00 32.71 1.82
2674 2994 5.815581 ACTATCAGTTAATCCCAGCAAACA 58.184 37.500 0.00 0.00 0.00 2.83
2706 3075 8.583810 TGTTAAGATAATGGCGTGAGTAATAC 57.416 34.615 0.00 0.00 0.00 1.89
2707 3076 8.418662 TGTTAAGATAATGGCGTGAGTAATACT 58.581 33.333 0.00 0.00 0.00 2.12
2708 3077 9.903682 GTTAAGATAATGGCGTGAGTAATACTA 57.096 33.333 0.00 0.00 0.00 1.82
2718 3087 8.685427 TGGCGTGAGTAATACTAACAAACTATA 58.315 33.333 8.52 0.00 28.37 1.31
2749 3118 3.797451 TTGTTGCAGATTTTCAGCACA 57.203 38.095 0.00 0.00 38.63 4.57
3533 3926 0.170561 CTGTCCTTCGGGTCGTACAG 59.829 60.000 0.00 0.00 36.28 2.74
3657 4050 2.124612 TCGCCGTCGGAGTATGGA 60.125 61.111 17.49 0.00 36.13 3.41
3841 4234 3.726144 TGCCGGCCATGGACATGA 61.726 61.111 26.77 0.00 41.20 3.07
3847 4240 1.376609 GGCCATGGACATGACGTTCC 61.377 60.000 18.40 0.00 41.20 3.62
3852 4245 2.652095 GGACATGACGTTCCCCGGA 61.652 63.158 0.73 0.00 42.24 5.14
4049 4442 3.192001 TGCAGCTGAAGAATGGATGAAAC 59.808 43.478 20.43 0.00 0.00 2.78
4062 4455 0.534203 ATGAAACGAACCGCACCTGT 60.534 50.000 0.00 0.00 0.00 4.00
4233 4627 4.517285 TGTGTTTGCTCTTCTTCTGTCTT 58.483 39.130 0.00 0.00 0.00 3.01
4268 4666 8.678593 TTCAACCACTGTATTGTAAATGTACA 57.321 30.769 0.00 0.00 38.49 2.90
4301 4699 4.141642 GCAATGGCCTAAAGATTTGGGATT 60.142 41.667 11.50 1.28 40.88 3.01
4302 4700 5.070313 GCAATGGCCTAAAGATTTGGGATTA 59.930 40.000 11.50 0.00 40.88 1.75
4303 4701 6.239686 GCAATGGCCTAAAGATTTGGGATTAT 60.240 38.462 11.50 0.30 40.88 1.28
4304 4702 6.923199 ATGGCCTAAAGATTTGGGATTATG 57.077 37.500 11.50 0.00 40.88 1.90
4305 4703 5.147032 TGGCCTAAAGATTTGGGATTATGG 58.853 41.667 11.50 0.00 40.88 2.74
4306 4704 4.528206 GGCCTAAAGATTTGGGATTATGGG 59.472 45.833 11.50 0.00 40.88 4.00
4307 4705 5.393866 GCCTAAAGATTTGGGATTATGGGA 58.606 41.667 11.50 0.00 40.88 4.37
4308 4706 6.019108 GCCTAAAGATTTGGGATTATGGGAT 58.981 40.000 11.50 0.00 40.88 3.85
4319 4717 7.437713 TGGGATTATGGGATATGATACACTC 57.562 40.000 0.00 0.00 0.00 3.51
4420 4818 4.797693 TTGCAACAAATGACAAATGCAG 57.202 36.364 0.00 0.00 43.72 4.41
4481 4880 3.495100 CCGCCTCCAATAATTGCTACTCT 60.495 47.826 0.00 0.00 0.00 3.24
4491 4890 9.941325 CCAATAATTGCTACTCTCTCTATTCAT 57.059 33.333 0.00 0.00 0.00 2.57
4553 5142 0.861837 GGCTGACACGAGTGAACAAG 59.138 55.000 10.50 3.18 0.00 3.16
4658 5254 3.575630 TGACAAGTACTTCTCGATGTGC 58.424 45.455 4.77 0.00 0.00 4.57
4662 5258 2.447443 AGTACTTCTCGATGTGCAGGA 58.553 47.619 0.00 0.00 0.00 3.86
4718 5314 6.202762 GGACATGCATATATCGAAAGTGACAA 59.797 38.462 0.00 0.00 0.00 3.18
4787 5386 9.962783 AATAGAATTGCAATCTTCTTGATAAGC 57.037 29.630 17.93 0.00 37.06 3.09
4802 5402 8.467402 TCTTGATAAGCTTCGTAGAAGAAAAG 57.533 34.615 0.00 6.95 45.90 2.27
4804 5404 6.931838 TGATAAGCTTCGTAGAAGAAAAGGA 58.068 36.000 0.00 0.00 45.90 3.36
4805 5405 7.383687 TGATAAGCTTCGTAGAAGAAAAGGAA 58.616 34.615 0.00 0.00 45.90 3.36
4810 5410 5.913514 GCTTCGTAGAAGAAAAGGAAAAACC 59.086 40.000 13.34 0.00 45.90 3.27
4832 5432 7.100458 ACCAACACCAATTATATGAGAAAGC 57.900 36.000 0.00 0.00 0.00 3.51
4914 5514 3.131396 TCGAGTGAAGAAGACCAAAAGC 58.869 45.455 0.00 0.00 0.00 3.51
5004 5604 8.757982 AATAACCAGTATGCTCTCATTTCAAT 57.242 30.769 0.00 0.00 34.22 2.57
5008 5608 5.359009 CCAGTATGCTCTCATTTCAATGGTT 59.641 40.000 0.00 0.00 33.80 3.67
5009 5609 6.459298 CCAGTATGCTCTCATTTCAATGGTTC 60.459 42.308 0.00 0.00 33.80 3.62
5010 5610 6.094464 CAGTATGCTCTCATTTCAATGGTTCA 59.906 38.462 0.00 0.00 37.03 3.18
5011 5611 5.578005 ATGCTCTCATTTCAATGGTTCAG 57.422 39.130 0.00 0.00 37.03 3.02
5012 5612 4.654915 TGCTCTCATTTCAATGGTTCAGA 58.345 39.130 0.00 0.00 37.03 3.27
5013 5613 5.072055 TGCTCTCATTTCAATGGTTCAGAA 58.928 37.500 0.00 0.00 37.03 3.02
5014 5614 5.535783 TGCTCTCATTTCAATGGTTCAGAAA 59.464 36.000 0.00 0.00 37.03 2.52
5015 5615 6.209986 TGCTCTCATTTCAATGGTTCAGAAAT 59.790 34.615 0.00 0.00 41.28 2.17
5016 5616 6.750963 GCTCTCATTTCAATGGTTCAGAAATC 59.249 38.462 0.00 0.00 39.28 2.17
5017 5617 7.161773 TCTCATTTCAATGGTTCAGAAATCC 57.838 36.000 0.00 0.00 39.28 3.01
5018 5618 6.153340 TCTCATTTCAATGGTTCAGAAATCCC 59.847 38.462 0.00 0.00 39.28 3.85
5019 5619 6.018469 TCATTTCAATGGTTCAGAAATCCCT 58.982 36.000 0.00 0.00 39.28 4.20
5020 5620 5.726980 TTTCAATGGTTCAGAAATCCCTG 57.273 39.130 0.00 0.00 35.55 4.45
5021 5621 4.656100 TCAATGGTTCAGAAATCCCTGA 57.344 40.909 0.00 0.00 41.06 3.86
5022 5622 5.197224 TCAATGGTTCAGAAATCCCTGAT 57.803 39.130 0.00 0.00 42.18 2.90
5023 5623 4.951715 TCAATGGTTCAGAAATCCCTGATG 59.048 41.667 0.00 0.00 42.18 3.07
5024 5624 3.370840 TGGTTCAGAAATCCCTGATGG 57.629 47.619 0.00 0.00 42.18 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
314 317 1.213296 AGTGTCCAAGTGGTGAAGGT 58.787 50.000 0.00 0.00 36.34 3.50
409 413 0.898320 ACACGAGCATGGTAAGAGCT 59.102 50.000 0.00 0.00 42.17 4.09
410 414 1.281899 GACACGAGCATGGTAAGAGC 58.718 55.000 0.00 0.00 0.00 4.09
524 537 2.598467 ACCGGCAGTGACCCAAAA 59.402 55.556 0.00 0.00 0.00 2.44
696 710 3.361917 GCGTAATTTGTGCACTGCTTTTG 60.362 43.478 19.41 4.67 0.00 2.44
716 730 1.927174 CCCGATTCTCAGTTAAGTGCG 59.073 52.381 5.35 0.00 0.00 5.34
731 745 0.107945 GCTGCTTCTCAAGTCCCGAT 60.108 55.000 0.00 0.00 0.00 4.18
739 753 0.890542 AATGTGGCGCTGCTTCTCAA 60.891 50.000 7.64 0.00 0.00 3.02
860 875 6.183360 ACGCACATAGTTTGTCACAATAGATG 60.183 38.462 0.00 0.00 36.00 2.90
1007 1031 1.653114 CTGCGAGAAGAAGAAGAAGCG 59.347 52.381 0.00 0.00 0.00 4.68
1184 1223 7.657761 AGATGGTATCTAACGATGATGAAAACC 59.342 37.037 0.00 0.00 38.00 3.27
1199 1238 3.118775 ACTGCGCAACAAGATGGTATCTA 60.119 43.478 13.05 0.00 39.08 1.98
1217 1256 4.024302 GGTTCAAGTTAGGTTGTGTACTGC 60.024 45.833 0.00 0.00 0.00 4.40
1308 1356 2.182904 ACAACGCCAAAAGAACGAAC 57.817 45.000 0.00 0.00 0.00 3.95
1311 1359 2.661979 GCTCTACAACGCCAAAAGAACG 60.662 50.000 0.00 0.00 0.00 3.95
1322 1370 2.094700 TGCCTGTCTAAGCTCTACAACG 60.095 50.000 0.00 0.00 0.00 4.10
1393 1653 6.972901 GCTAATCTATTTAACAAACCTGGCAC 59.027 38.462 0.00 0.00 0.00 5.01
1527 1788 7.201145 TCTTGTAGCTTAACGGTTGATATCTC 58.799 38.462 3.07 0.00 0.00 2.75
1533 1794 5.362263 ACTTTCTTGTAGCTTAACGGTTGA 58.638 37.500 3.07 0.00 0.00 3.18
1539 1800 7.636326 TGTTGCTTACTTTCTTGTAGCTTAAC 58.364 34.615 0.00 0.00 0.00 2.01
1546 1807 5.418310 GCACTGTTGCTTACTTTCTTGTA 57.582 39.130 0.00 0.00 46.17 2.41
1547 1808 4.292977 GCACTGTTGCTTACTTTCTTGT 57.707 40.909 0.00 0.00 46.17 3.16
1646 1917 0.033405 TACGGGAAGGGAGAGTCAGG 60.033 60.000 0.00 0.00 0.00 3.86
2005 2306 8.169977 TGGCCTAACATTCTATGAATGAATTC 57.830 34.615 22.22 0.00 37.31 2.17
2011 2312 7.753630 AGAATCTGGCCTAACATTCTATGAAT 58.246 34.615 3.32 0.00 34.49 2.57
2076 2384 1.202486 TCTGGTGTTGACGTGGAGAAC 60.202 52.381 0.00 0.00 0.00 3.01
2169 2477 0.110823 CGGACTGCACGTAACTTTGC 60.111 55.000 0.00 0.00 39.33 3.68
2251 2559 2.746412 TAGTCCGTCCGTCCAACCGA 62.746 60.000 0.00 0.00 0.00 4.69
2252 2560 2.262471 CTAGTCCGTCCGTCCAACCG 62.262 65.000 0.00 0.00 0.00 4.44
2301 2609 8.385111 GCGCTTGTGTCTGTACTAATATTTTTA 58.615 33.333 0.00 0.00 0.00 1.52
2302 2610 7.119262 AGCGCTTGTGTCTGTACTAATATTTTT 59.881 33.333 2.64 0.00 0.00 1.94
2303 2611 6.594159 AGCGCTTGTGTCTGTACTAATATTTT 59.406 34.615 2.64 0.00 0.00 1.82
2304 2612 6.106673 AGCGCTTGTGTCTGTACTAATATTT 58.893 36.000 2.64 0.00 0.00 1.40
2305 2613 5.661458 AGCGCTTGTGTCTGTACTAATATT 58.339 37.500 2.64 0.00 0.00 1.28
2306 2614 5.163550 TGAGCGCTTGTGTCTGTACTAATAT 60.164 40.000 13.26 0.00 0.00 1.28
2307 2615 4.157105 TGAGCGCTTGTGTCTGTACTAATA 59.843 41.667 13.26 0.00 0.00 0.98
2308 2616 3.056821 TGAGCGCTTGTGTCTGTACTAAT 60.057 43.478 13.26 0.00 0.00 1.73
2309 2617 2.295070 TGAGCGCTTGTGTCTGTACTAA 59.705 45.455 13.26 0.00 0.00 2.24
2310 2618 1.883926 TGAGCGCTTGTGTCTGTACTA 59.116 47.619 13.26 0.00 0.00 1.82
2311 2619 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
2312 2620 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
2313 2621 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
2314 2622 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
2315 2623 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
2316 2624 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
2317 2625 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
2318 2626 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
2319 2627 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
2320 2628 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
2321 2629 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
2322 2630 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
2323 2631 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
2326 2634 4.352039 AGTATATGCGCGTGTATATGAGC 58.648 43.478 24.28 15.73 38.85 4.26
2327 2635 5.569413 TGAGTATATGCGCGTGTATATGAG 58.431 41.667 24.28 0.00 34.71 2.90
2328 2636 5.554822 TGAGTATATGCGCGTGTATATGA 57.445 39.130 24.28 9.82 34.71 2.15
2329 2637 5.399596 GGATGAGTATATGCGCGTGTATATG 59.600 44.000 24.28 0.00 34.71 1.78
2330 2638 5.299531 AGGATGAGTATATGCGCGTGTATAT 59.700 40.000 20.79 20.79 37.23 0.86
2331 2639 4.638865 AGGATGAGTATATGCGCGTGTATA 59.361 41.667 13.61 9.23 0.00 1.47
2332 2640 3.444034 AGGATGAGTATATGCGCGTGTAT 59.556 43.478 13.61 9.22 0.00 2.29
2333 2641 2.817844 AGGATGAGTATATGCGCGTGTA 59.182 45.455 13.61 7.27 0.00 2.90
2334 2642 1.613925 AGGATGAGTATATGCGCGTGT 59.386 47.619 13.61 8.52 0.00 4.49
2335 2643 2.354109 AGGATGAGTATATGCGCGTG 57.646 50.000 13.61 0.00 0.00 5.34
2336 2644 4.720649 ATAAGGATGAGTATATGCGCGT 57.279 40.909 8.43 7.55 0.00 6.01
2337 2645 6.291112 CGTTTATAAGGATGAGTATATGCGCG 60.291 42.308 0.00 0.00 0.00 6.86
2338 2646 6.508088 GCGTTTATAAGGATGAGTATATGCGC 60.508 42.308 0.00 0.00 0.00 6.09
2339 2647 6.530181 TGCGTTTATAAGGATGAGTATATGCG 59.470 38.462 0.00 0.00 0.00 4.73
2340 2648 7.330946 TGTGCGTTTATAAGGATGAGTATATGC 59.669 37.037 0.00 0.00 0.00 3.14
2341 2649 8.648097 GTGTGCGTTTATAAGGATGAGTATATG 58.352 37.037 0.00 0.00 0.00 1.78
2342 2650 8.364894 TGTGTGCGTTTATAAGGATGAGTATAT 58.635 33.333 0.00 0.00 0.00 0.86
2343 2651 7.650504 GTGTGTGCGTTTATAAGGATGAGTATA 59.349 37.037 0.00 0.00 0.00 1.47
2344 2652 6.479001 GTGTGTGCGTTTATAAGGATGAGTAT 59.521 38.462 0.00 0.00 0.00 2.12
2345 2653 5.808540 GTGTGTGCGTTTATAAGGATGAGTA 59.191 40.000 0.00 0.00 0.00 2.59
2346 2654 4.630069 GTGTGTGCGTTTATAAGGATGAGT 59.370 41.667 0.00 0.00 0.00 3.41
2347 2655 4.259810 CGTGTGTGCGTTTATAAGGATGAG 60.260 45.833 0.00 0.00 0.00 2.90
2348 2656 3.615056 CGTGTGTGCGTTTATAAGGATGA 59.385 43.478 0.00 0.00 0.00 2.92
2349 2657 3.784199 GCGTGTGTGCGTTTATAAGGATG 60.784 47.826 0.00 0.00 0.00 3.51
2350 2658 2.350498 GCGTGTGTGCGTTTATAAGGAT 59.650 45.455 0.00 0.00 0.00 3.24
2351 2659 1.727880 GCGTGTGTGCGTTTATAAGGA 59.272 47.619 0.00 0.00 0.00 3.36
2352 2660 1.461512 TGCGTGTGTGCGTTTATAAGG 59.538 47.619 0.00 0.00 37.81 2.69
2353 2661 2.096664 TGTGCGTGTGTGCGTTTATAAG 60.097 45.455 0.00 0.00 37.81 1.73
2354 2662 1.865340 TGTGCGTGTGTGCGTTTATAA 59.135 42.857 0.00 0.00 37.81 0.98
2355 2663 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
2356 2664 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
2357 2665 1.348938 GTGTGCGTGTGTGCGTTTA 59.651 52.632 0.00 0.00 37.81 2.01
2358 2666 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
2359 2667 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
2362 2670 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
2363 2671 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
2364 2672 1.692173 AAGGTAGGGTGTGCGTGTGT 61.692 55.000 0.00 0.00 0.00 3.72
2365 2673 0.534203 AAAGGTAGGGTGTGCGTGTG 60.534 55.000 0.00 0.00 0.00 3.82
2366 2674 1.050204 TAAAGGTAGGGTGTGCGTGT 58.950 50.000 0.00 0.00 0.00 4.49
2367 2675 2.006888 CATAAAGGTAGGGTGTGCGTG 58.993 52.381 0.00 0.00 0.00 5.34
2368 2676 1.903860 TCATAAAGGTAGGGTGTGCGT 59.096 47.619 0.00 0.00 0.00 5.24
2369 2677 2.676342 GTTCATAAAGGTAGGGTGTGCG 59.324 50.000 0.00 0.00 0.00 5.34
2370 2678 3.439129 GTGTTCATAAAGGTAGGGTGTGC 59.561 47.826 0.00 0.00 0.00 4.57
2371 2679 4.007659 GGTGTTCATAAAGGTAGGGTGTG 58.992 47.826 0.00 0.00 0.00 3.82
2372 2680 3.914435 AGGTGTTCATAAAGGTAGGGTGT 59.086 43.478 0.00 0.00 0.00 4.16
2373 2681 4.569719 AGGTGTTCATAAAGGTAGGGTG 57.430 45.455 0.00 0.00 0.00 4.61
2374 2682 4.600111 TGAAGGTGTTCATAAAGGTAGGGT 59.400 41.667 0.00 0.00 37.79 4.34
2375 2683 5.174037 TGAAGGTGTTCATAAAGGTAGGG 57.826 43.478 0.00 0.00 37.79 3.53
2376 2684 7.447238 TCTTTTGAAGGTGTTCATAAAGGTAGG 59.553 37.037 15.16 0.00 42.41 3.18
2377 2685 8.290325 GTCTTTTGAAGGTGTTCATAAAGGTAG 58.710 37.037 15.16 0.00 42.41 3.18
2378 2686 7.996644 AGTCTTTTGAAGGTGTTCATAAAGGTA 59.003 33.333 15.16 3.78 42.41 3.08
2379 2687 6.833933 AGTCTTTTGAAGGTGTTCATAAAGGT 59.166 34.615 15.16 7.26 42.41 3.50
2380 2688 7.013274 TCAGTCTTTTGAAGGTGTTCATAAAGG 59.987 37.037 15.16 0.00 42.41 3.11
2381 2689 7.930217 TCAGTCTTTTGAAGGTGTTCATAAAG 58.070 34.615 12.03 12.03 42.41 1.85
2382 2690 7.468631 GCTCAGTCTTTTGAAGGTGTTCATAAA 60.469 37.037 0.00 0.00 42.41 1.40
2383 2691 6.017109 GCTCAGTCTTTTGAAGGTGTTCATAA 60.017 38.462 0.00 0.00 42.41 1.90
2384 2692 5.470098 GCTCAGTCTTTTGAAGGTGTTCATA 59.530 40.000 0.00 0.00 42.41 2.15
2385 2693 4.276926 GCTCAGTCTTTTGAAGGTGTTCAT 59.723 41.667 0.00 0.00 42.41 2.57
2386 2694 3.627577 GCTCAGTCTTTTGAAGGTGTTCA 59.372 43.478 0.00 0.00 41.13 3.18
2387 2695 3.003793 GGCTCAGTCTTTTGAAGGTGTTC 59.996 47.826 0.00 0.00 0.00 3.18
2388 2696 2.952310 GGCTCAGTCTTTTGAAGGTGTT 59.048 45.455 0.00 0.00 0.00 3.32
2389 2697 2.576615 GGCTCAGTCTTTTGAAGGTGT 58.423 47.619 0.00 0.00 0.00 4.16
2390 2698 1.532868 CGGCTCAGTCTTTTGAAGGTG 59.467 52.381 0.00 0.00 0.00 4.00
2391 2699 1.543429 CCGGCTCAGTCTTTTGAAGGT 60.543 52.381 0.00 0.00 0.00 3.50
2392 2700 1.160137 CCGGCTCAGTCTTTTGAAGG 58.840 55.000 0.00 0.00 0.00 3.46
2393 2701 0.519077 GCCGGCTCAGTCTTTTGAAG 59.481 55.000 22.15 0.00 0.00 3.02
2394 2702 0.179032 TGCCGGCTCAGTCTTTTGAA 60.179 50.000 29.70 0.00 0.00 2.69
2395 2703 0.036732 ATGCCGGCTCAGTCTTTTGA 59.963 50.000 29.70 1.81 0.00 2.69
2396 2704 1.737838 TATGCCGGCTCAGTCTTTTG 58.262 50.000 29.70 0.00 0.00 2.44
2397 2705 2.092968 TGATATGCCGGCTCAGTCTTTT 60.093 45.455 29.70 1.60 0.00 2.27
2398 2706 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
2399 2707 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
2400 2708 1.001746 CATGATATGCCGGCTCAGTCT 59.998 52.381 29.70 5.43 0.00 3.24
2401 2709 1.270518 ACATGATATGCCGGCTCAGTC 60.271 52.381 29.70 19.55 0.00 3.51
2402 2710 0.761187 ACATGATATGCCGGCTCAGT 59.239 50.000 29.70 18.07 0.00 3.41
2403 2711 1.534163 CAACATGATATGCCGGCTCAG 59.466 52.381 29.70 17.48 0.00 3.35
2404 2712 1.140652 TCAACATGATATGCCGGCTCA 59.859 47.619 29.70 23.34 0.00 4.26
2405 2713 1.802960 CTCAACATGATATGCCGGCTC 59.197 52.381 29.70 17.89 0.00 4.70
2406 2714 1.417517 TCTCAACATGATATGCCGGCT 59.582 47.619 29.70 15.76 0.00 5.52
2407 2715 1.882912 TCTCAACATGATATGCCGGC 58.117 50.000 22.73 22.73 0.00 6.13
2408 2716 5.469760 TGTAAATCTCAACATGATATGCCGG 59.530 40.000 0.00 0.00 0.00 6.13
2409 2717 6.544038 TGTAAATCTCAACATGATATGCCG 57.456 37.500 0.00 0.00 0.00 5.69
2410 2718 8.408601 ACTTTGTAAATCTCAACATGATATGCC 58.591 33.333 0.00 0.00 0.00 4.40
2411 2719 9.443283 GACTTTGTAAATCTCAACATGATATGC 57.557 33.333 0.00 0.00 0.00 3.14
2415 2723 9.234827 TGATGACTTTGTAAATCTCAACATGAT 57.765 29.630 0.00 0.00 0.00 2.45
2416 2724 8.620116 TGATGACTTTGTAAATCTCAACATGA 57.380 30.769 0.00 0.00 0.00 3.07
2419 2727 9.942850 TCTATGATGACTTTGTAAATCTCAACA 57.057 29.630 0.00 0.00 0.00 3.33
2421 2729 9.087424 CGTCTATGATGACTTTGTAAATCTCAA 57.913 33.333 0.00 0.00 35.00 3.02
2422 2730 8.251026 ACGTCTATGATGACTTTGTAAATCTCA 58.749 33.333 0.00 0.00 35.00 3.27
2423 2731 8.635877 ACGTCTATGATGACTTTGTAAATCTC 57.364 34.615 0.00 0.00 35.00 2.75
2424 2732 8.470805 AGACGTCTATGATGACTTTGTAAATCT 58.529 33.333 18.46 0.00 35.00 2.40
2425 2733 8.635877 AGACGTCTATGATGACTTTGTAAATC 57.364 34.615 18.46 0.00 35.00 2.17
2426 2734 7.432545 CGAGACGTCTATGATGACTTTGTAAAT 59.567 37.037 20.09 0.00 35.00 1.40
2427 2735 6.745907 CGAGACGTCTATGATGACTTTGTAAA 59.254 38.462 20.09 0.00 35.00 2.01
2428 2736 6.128090 ACGAGACGTCTATGATGACTTTGTAA 60.128 38.462 20.09 0.00 33.69 2.41
2429 2737 5.353400 ACGAGACGTCTATGATGACTTTGTA 59.647 40.000 20.09 0.00 33.69 2.41
2430 2738 4.156190 ACGAGACGTCTATGATGACTTTGT 59.844 41.667 20.09 0.00 33.69 2.83
2431 2739 4.663166 ACGAGACGTCTATGATGACTTTG 58.337 43.478 20.09 0.00 33.69 2.77
2432 2740 4.966965 ACGAGACGTCTATGATGACTTT 57.033 40.909 20.09 0.00 33.69 2.66
2463 2771 1.535833 TCCAGTCAGAGGAGACGTTC 58.464 55.000 0.00 0.00 43.24 3.95
2464 2772 1.821753 CATCCAGTCAGAGGAGACGTT 59.178 52.381 0.00 0.00 43.24 3.99
2465 2773 1.468985 CATCCAGTCAGAGGAGACGT 58.531 55.000 0.00 0.00 43.24 4.34
2466 2774 0.102120 GCATCCAGTCAGAGGAGACG 59.898 60.000 0.00 0.00 43.24 4.18
2467 2775 1.189752 TGCATCCAGTCAGAGGAGAC 58.810 55.000 0.00 0.00 38.83 3.36
2468 2776 1.942776 TTGCATCCAGTCAGAGGAGA 58.057 50.000 0.00 0.00 38.83 3.71
2469 2777 2.562635 CATTGCATCCAGTCAGAGGAG 58.437 52.381 0.00 0.00 38.83 3.69
2470 2778 1.407851 GCATTGCATCCAGTCAGAGGA 60.408 52.381 3.15 0.00 39.97 3.71
2471 2779 1.022735 GCATTGCATCCAGTCAGAGG 58.977 55.000 3.15 0.00 0.00 3.69
2472 2780 0.656259 CGCATTGCATCCAGTCAGAG 59.344 55.000 9.69 0.00 0.00 3.35
2473 2781 0.249955 TCGCATTGCATCCAGTCAGA 59.750 50.000 9.69 0.00 0.00 3.27
2474 2782 0.656259 CTCGCATTGCATCCAGTCAG 59.344 55.000 9.69 0.00 0.00 3.51
2475 2783 0.036105 ACTCGCATTGCATCCAGTCA 60.036 50.000 9.69 0.00 0.00 3.41
2476 2784 1.939974 TACTCGCATTGCATCCAGTC 58.060 50.000 9.69 0.00 0.00 3.51
2477 2785 2.487934 GATACTCGCATTGCATCCAGT 58.512 47.619 9.69 7.05 0.00 4.00
2478 2786 1.802960 GGATACTCGCATTGCATCCAG 59.197 52.381 16.76 6.60 36.09 3.86
2479 2787 1.873486 CGGATACTCGCATTGCATCCA 60.873 52.381 19.86 0.75 35.85 3.41
2480 2788 0.792640 CGGATACTCGCATTGCATCC 59.207 55.000 9.69 11.81 33.28 3.51
2481 2789 0.792640 CCGGATACTCGCATTGCATC 59.207 55.000 9.69 3.94 0.00 3.91
2482 2790 0.392706 TCCGGATACTCGCATTGCAT 59.607 50.000 0.00 0.00 0.00 3.96
2483 2791 0.392706 ATCCGGATACTCGCATTGCA 59.607 50.000 17.43 0.00 0.00 4.08
2484 2792 1.512926 AATCCGGATACTCGCATTGC 58.487 50.000 19.48 0.00 0.00 3.56
2485 2793 5.440685 GTTTAAATCCGGATACTCGCATTG 58.559 41.667 19.48 0.00 0.00 2.82
2486 2794 4.514066 GGTTTAAATCCGGATACTCGCATT 59.486 41.667 19.48 8.98 0.00 3.56
2487 2795 4.062991 GGTTTAAATCCGGATACTCGCAT 58.937 43.478 19.48 0.00 0.00 4.73
2488 2796 3.460103 GGTTTAAATCCGGATACTCGCA 58.540 45.455 19.48 0.00 0.00 5.10
2489 2797 2.804527 GGGTTTAAATCCGGATACTCGC 59.195 50.000 19.48 11.10 0.00 5.03
2490 2798 4.056050 CAGGGTTTAAATCCGGATACTCG 58.944 47.826 19.48 5.03 33.19 4.18
2491 2799 5.286267 TCAGGGTTTAAATCCGGATACTC 57.714 43.478 19.48 12.34 33.19 2.59
2492 2800 5.456186 CCATCAGGGTTTAAATCCGGATACT 60.456 44.000 26.45 10.83 41.32 2.12
2493 2801 4.760204 CCATCAGGGTTTAAATCCGGATAC 59.240 45.833 26.45 12.11 41.32 2.24
2494 2802 4.980573 CCATCAGGGTTTAAATCCGGATA 58.019 43.478 26.45 7.08 41.32 2.59
2495 2803 3.832527 CCATCAGGGTTTAAATCCGGAT 58.167 45.455 22.90 22.90 43.57 4.18
2496 2804 3.290948 CCATCAGGGTTTAAATCCGGA 57.709 47.619 20.61 20.61 37.78 5.14
2509 2817 0.697511 TGGTATCCCCACCCATCAGG 60.698 60.000 0.00 0.00 38.72 3.86
2510 2818 2.944231 TGGTATCCCCACCCATCAG 58.056 57.895 0.00 0.00 38.72 2.90
2521 2829 4.527427 GGTTAGAGGGACTGTATGGTATCC 59.473 50.000 0.00 0.00 41.55 2.59
2522 2830 5.145564 TGGTTAGAGGGACTGTATGGTATC 58.854 45.833 0.00 0.00 41.55 2.24
2523 2831 5.152306 TGGTTAGAGGGACTGTATGGTAT 57.848 43.478 0.00 0.00 41.55 2.73
2524 2832 4.613265 TGGTTAGAGGGACTGTATGGTA 57.387 45.455 0.00 0.00 41.55 3.25
2525 2833 3.484953 TGGTTAGAGGGACTGTATGGT 57.515 47.619 0.00 0.00 41.55 3.55
2526 2834 4.408921 TCAATGGTTAGAGGGACTGTATGG 59.591 45.833 0.00 0.00 41.55 2.74
2527 2835 5.614324 TCAATGGTTAGAGGGACTGTATG 57.386 43.478 0.00 0.00 41.55 2.39
2528 2836 5.104485 GGTTCAATGGTTAGAGGGACTGTAT 60.104 44.000 0.00 0.00 41.55 2.29
2529 2837 4.224370 GGTTCAATGGTTAGAGGGACTGTA 59.776 45.833 0.00 0.00 41.55 2.74
2530 2838 3.009143 GGTTCAATGGTTAGAGGGACTGT 59.991 47.826 0.00 0.00 41.55 3.55
2531 2839 3.009033 TGGTTCAATGGTTAGAGGGACTG 59.991 47.826 0.00 0.00 41.55 3.51
2533 2841 3.713826 TGGTTCAATGGTTAGAGGGAC 57.286 47.619 0.00 0.00 0.00 4.46
2534 2842 4.412199 CCTATGGTTCAATGGTTAGAGGGA 59.588 45.833 0.00 0.00 0.00 4.20
2535 2843 4.166144 ACCTATGGTTCAATGGTTAGAGGG 59.834 45.833 0.00 0.00 27.29 4.30
2536 2844 5.373812 ACCTATGGTTCAATGGTTAGAGG 57.626 43.478 0.00 0.00 27.29 3.69
2537 2845 5.590259 CCAACCTATGGTTCAATGGTTAGAG 59.410 44.000 0.00 0.00 43.05 2.43
2538 2846 5.505780 CCAACCTATGGTTCAATGGTTAGA 58.494 41.667 0.00 0.00 43.05 2.10
2539 2847 5.835113 CCAACCTATGGTTCAATGGTTAG 57.165 43.478 0.00 0.00 43.05 2.34
2552 2860 1.202031 GCTTTCGCGAACCAACCTATG 60.202 52.381 23.33 1.15 0.00 2.23
2553 2861 1.084289 GCTTTCGCGAACCAACCTAT 58.916 50.000 23.33 0.00 0.00 2.57
2554 2862 0.249953 TGCTTTCGCGAACCAACCTA 60.250 50.000 23.33 3.73 39.65 3.08
2555 2863 1.098712 TTGCTTTCGCGAACCAACCT 61.099 50.000 23.33 0.00 39.65 3.50
2556 2864 0.248702 TTTGCTTTCGCGAACCAACC 60.249 50.000 23.33 8.60 39.65 3.77
2557 2865 3.243855 TTTGCTTTCGCGAACCAAC 57.756 47.368 23.33 11.58 39.65 3.77
2562 2870 0.665835 ATGTGGTTTGCTTTCGCGAA 59.334 45.000 19.38 19.38 39.65 4.70
2563 2871 0.665835 AATGTGGTTTGCTTTCGCGA 59.334 45.000 3.71 3.71 39.65 5.87
2564 2872 0.777631 CAATGTGGTTTGCTTTCGCG 59.222 50.000 0.00 0.00 39.65 5.87
2565 2873 2.053627 CTCAATGTGGTTTGCTTTCGC 58.946 47.619 0.00 0.00 0.00 4.70
2566 2874 3.354089 ACTCAATGTGGTTTGCTTTCG 57.646 42.857 0.00 0.00 0.00 3.46
2567 2875 5.008613 TGACTACTCAATGTGGTTTGCTTTC 59.991 40.000 0.00 0.00 40.55 2.62
2568 2876 4.887071 TGACTACTCAATGTGGTTTGCTTT 59.113 37.500 0.00 0.00 40.55 3.51
2569 2877 4.460263 TGACTACTCAATGTGGTTTGCTT 58.540 39.130 0.00 0.00 40.55 3.91
2570 2878 4.067896 CTGACTACTCAATGTGGTTTGCT 58.932 43.478 0.00 0.00 40.55 3.91
2571 2879 4.065088 TCTGACTACTCAATGTGGTTTGC 58.935 43.478 0.00 0.00 40.55 3.68
2572 2880 6.618287 TTTCTGACTACTCAATGTGGTTTG 57.382 37.500 0.00 0.00 40.55 2.93
2573 2881 6.601613 TGTTTTCTGACTACTCAATGTGGTTT 59.398 34.615 0.00 0.00 40.55 3.27
2574 2882 6.119536 TGTTTTCTGACTACTCAATGTGGTT 58.880 36.000 0.00 0.00 40.55 3.67
2575 2883 5.680619 TGTTTTCTGACTACTCAATGTGGT 58.319 37.500 0.00 0.00 43.23 4.16
2576 2884 6.605849 CATGTTTTCTGACTACTCAATGTGG 58.394 40.000 0.00 0.00 0.00 4.17
2577 2885 6.082338 GCATGTTTTCTGACTACTCAATGTG 58.918 40.000 0.00 0.00 0.00 3.21
2578 2886 5.764686 TGCATGTTTTCTGACTACTCAATGT 59.235 36.000 0.00 0.00 0.00 2.71
2592 2902 0.318955 AGTGGCGCTTGCATGTTTTC 60.319 50.000 7.64 0.00 41.71 2.29
2597 2907 1.303799 AAGAGAGTGGCGCTTGCATG 61.304 55.000 7.64 0.00 41.71 4.06
2603 2913 0.108424 CTTGCTAAGAGAGTGGCGCT 60.108 55.000 7.64 0.00 0.00 5.92
2655 2975 4.098914 ACTGTTTGCTGGGATTAACTGA 57.901 40.909 0.00 0.00 0.00 3.41
2665 2985 6.312399 TCTTAACATGTTACTGTTTGCTGG 57.688 37.500 17.85 0.08 39.88 4.85
2674 2994 7.045416 TCACGCCATTATCTTAACATGTTACT 58.955 34.615 17.85 8.47 0.00 2.24
2724 3093 3.180387 GCTGAAAATCTGCAACAAACGAC 59.820 43.478 4.61 0.00 40.47 4.34
2725 3094 3.181492 TGCTGAAAATCTGCAACAAACGA 60.181 39.130 9.12 0.00 46.01 3.85
2726 3095 3.114809 TGCTGAAAATCTGCAACAAACG 58.885 40.909 9.12 0.00 46.01 3.60
2749 3118 2.788640 GCATGCCGGTGCCATTCAT 61.789 57.895 6.36 0.00 39.18 2.57
3009 3402 2.344872 ACGTAGTTTCCCACGCCC 59.655 61.111 0.00 0.00 37.78 6.13
3470 3863 1.742071 GCAGGCAGTAGGAGAAAGAGC 60.742 57.143 0.00 0.00 0.00 4.09
3474 3867 0.902984 TCGGCAGGCAGTAGGAGAAA 60.903 55.000 0.00 0.00 0.00 2.52
3504 3897 1.895966 GAAGGACAGGTACCCGGTC 59.104 63.158 20.75 20.75 45.54 4.79
3533 3926 1.750399 TACGAGTACTGTCCCGGGC 60.750 63.158 18.49 12.24 0.00 6.13
3540 3933 0.890542 TGGGCGTGTACGAGTACTGT 60.891 55.000 8.82 1.39 43.02 3.55
3636 4029 2.768492 ATACTCCGACGGCGACACC 61.768 63.158 15.16 0.00 40.82 4.16
3657 4050 1.227380 GATGATCGTCGGCAGGCTT 60.227 57.895 0.00 0.00 0.00 4.35
3832 4225 1.220749 CGGGGAACGTCATGTCCAT 59.779 57.895 6.36 0.00 37.93 3.41
4049 4442 2.514013 GCGATACAGGTGCGGTTCG 61.514 63.158 0.00 0.00 0.00 3.95
4062 4455 0.182299 TTGGGTCCATGCATGCGATA 59.818 50.000 21.69 3.25 0.00 2.92
4211 4605 4.142609 AGACAGAAGAAGAGCAAACACA 57.857 40.909 0.00 0.00 0.00 3.72
4268 4666 7.003402 TCTTTAGGCCATTGCAATACTTTTT 57.997 32.000 12.53 0.00 40.13 1.94
4319 4717 5.034554 AGAACGCACATTAACAAGTCATG 57.965 39.130 0.00 0.00 0.00 3.07
4420 4818 8.034804 ACCAATTGAATAGTTTGGCTAATGTTC 58.965 33.333 7.12 0.00 42.98 3.18
4512 4911 8.150945 CAGCCTGTATGTAGTCCATATTAAAGT 58.849 37.037 0.00 0.00 38.29 2.66
4513 4912 8.367911 TCAGCCTGTATGTAGTCCATATTAAAG 58.632 37.037 0.00 0.00 38.29 1.85
4609 5198 3.432252 CCATGTACTCTCCGTTCACAAAC 59.568 47.826 0.00 0.00 0.00 2.93
4658 5254 1.107538 CCATCATGGGCAGCTTCCTG 61.108 60.000 1.39 0.00 42.13 3.86
4662 5258 3.127099 CATCCATCATGGGCAGCTT 57.873 52.632 3.05 0.00 38.32 3.74
4787 5386 7.023197 TGGTTTTTCCTTTTCTTCTACGAAG 57.977 36.000 0.00 0.00 37.07 3.79
4802 5402 8.527810 TCTCATATAATTGGTGTTGGTTTTTCC 58.472 33.333 0.00 0.00 0.00 3.13
4805 5405 9.927668 CTTTCTCATATAATTGGTGTTGGTTTT 57.072 29.630 0.00 0.00 0.00 2.43
4810 5410 7.537715 TGTGCTTTCTCATATAATTGGTGTTG 58.462 34.615 0.00 0.00 0.00 3.33
4832 5432 8.503196 TCTGCATGTAAATGTAAACTAGTTGTG 58.497 33.333 9.34 0.00 0.00 3.33
4914 5514 3.374220 TGGAATTTGCTGCTTCACAAG 57.626 42.857 0.00 0.00 0.00 3.16
4928 5528 2.502142 TCTGTGCTCTGCATGGAATT 57.498 45.000 0.00 0.00 41.91 2.17
4994 5594 6.154021 AGGGATTTCTGAACCATTGAAATGAG 59.846 38.462 4.58 0.00 39.56 2.90
5004 5604 3.370840 CCATCAGGGATTTCTGAACCA 57.629 47.619 0.00 0.00 45.54 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.