Multiple sequence alignment - TraesCS7A01G219000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G219000 chr7A 100.000 2380 0 0 1 2380 186512963 186515342 0.000000e+00 4396
1 TraesCS7A01G219000 chr7A 100.000 1901 0 0 2741 4641 186515703 186517603 0.000000e+00 3511
2 TraesCS7A01G219000 chr7A 99.533 428 1 1 4214 4641 43517618 43518044 0.000000e+00 778
3 TraesCS7A01G219000 chr7A 91.489 188 16 0 2787 2974 186515058 186515245 4.610000e-65 259
4 TraesCS7A01G219000 chr7A 91.489 188 16 0 2096 2283 186515749 186515936 4.610000e-65 259
5 TraesCS7A01G219000 chr7A 90.441 136 13 0 2787 2922 186515166 186515301 3.690000e-41 180
6 TraesCS7A01G219000 chr7A 90.441 136 13 0 2204 2339 186515749 186515884 3.690000e-41 180
7 TraesCS7A01G219000 chr7A 92.157 102 8 0 1262 1363 186514188 186514289 1.350000e-30 145
8 TraesCS7A01G219000 chr7A 92.157 102 8 0 1226 1327 186514224 186514325 1.350000e-30 145
9 TraesCS7A01G219000 chr7D 93.225 2406 84 21 1 2380 184200451 184198099 0.000000e+00 3467
10 TraesCS7A01G219000 chr7D 96.219 1481 46 5 2741 4217 184197997 184196523 0.000000e+00 2416
11 TraesCS7A01G219000 chr7D 88.380 284 31 2 2057 2339 184198314 184198032 1.600000e-89 340
12 TraesCS7A01G219000 chr7D 89.899 198 20 0 2787 2984 184198383 184198186 5.960000e-64 255
13 TraesCS7A01G219000 chr7D 89.340 197 21 0 2096 2292 184197951 184197755 9.970000e-62 248
14 TraesCS7A01G219000 chr7D 85.356 239 33 2 2790 3027 184198164 184197927 3.590000e-61 246
15 TraesCS7A01G219000 chr7D 84.651 215 31 2 2063 2276 184198200 184197987 3.640000e-51 213
16 TraesCS7A01G219000 chr7D 84.896 192 27 2 2787 2977 184198275 184198085 4.740000e-45 193
17 TraesCS7A01G219000 chr7D 76.780 323 73 2 2059 2380 184198366 184198045 3.690000e-41 180
18 TraesCS7A01G219000 chr7D 81.407 199 29 5 2790 2984 184198056 184197862 6.220000e-34 156
19 TraesCS7A01G219000 chr7D 95.238 63 3 0 1229 1291 184199178 184199116 2.950000e-17 100
20 TraesCS7A01G219000 chr7B 92.944 1984 72 24 363 2323 153451449 153449511 0.000000e+00 2826
21 TraesCS7A01G219000 chr7B 95.476 1481 48 5 2741 4217 153449000 153447535 0.000000e+00 2346
22 TraesCS7A01G219000 chr7B 88.352 352 23 6 1 351 153451980 153451646 1.550000e-109 407
23 TraesCS7A01G219000 chr7B 84.192 291 40 3 2058 2345 153449100 153448813 1.270000e-70 278
24 TraesCS7A01G219000 chr7B 90.909 198 18 0 2787 2984 153449738 153449541 2.750000e-67 267
25 TraesCS7A01G219000 chr7B 89.848 197 20 0 2096 2292 153448954 153448758 2.140000e-63 254
26 TraesCS7A01G219000 chr7B 93.827 162 10 0 2866 3027 153449091 153448930 1.290000e-60 244
27 TraesCS7A01G219000 chr7B 94.340 159 9 0 2057 2215 153449669 153449511 1.290000e-60 244
28 TraesCS7A01G219000 chr7B 84.000 200 22 7 2790 2984 153449059 153448865 2.850000e-42 183
29 TraesCS7A01G219000 chr7B 92.500 120 9 0 2787 2906 153449630 153449511 6.170000e-39 172
30 TraesCS7A01G219000 chr7B 92.929 99 6 1 1738 1835 153450066 153449968 4.840000e-30 143
31 TraesCS7A01G219000 chr7B 92.958 71 5 0 1293 1363 153450577 153450507 2.280000e-18 104
32 TraesCS7A01G219000 chr1A 99.765 426 1 0 4216 4641 203816796 203816371 0.000000e+00 782
33 TraesCS7A01G219000 chr5B 99.765 425 1 0 4217 4641 375662921 375662497 0.000000e+00 780
34 TraesCS7A01G219000 chr5B 99.764 424 1 0 4218 4641 711416632 711417055 0.000000e+00 778
35 TraesCS7A01G219000 chr5A 99.765 425 1 0 4217 4641 609263843 609264267 0.000000e+00 780
36 TraesCS7A01G219000 chr1B 99.765 425 1 0 4217 4641 24150323 24149899 0.000000e+00 780
37 TraesCS7A01G219000 chrUn 99.764 424 1 0 4218 4641 49783967 49783544 0.000000e+00 778
38 TraesCS7A01G219000 chr4B 99.764 424 1 0 4218 4641 18256909 18256486 0.000000e+00 778
39 TraesCS7A01G219000 chr2B 99.764 424 1 0 4218 4641 593641294 593641717 0.000000e+00 778


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G219000 chr7A 186512963 186517603 4640 False 1134.375000 4396 93.521750 1 4641 8 chr7A.!!$F2 4640
1 TraesCS7A01G219000 chr7D 184196523 184200451 3928 True 710.363636 3467 87.762818 1 4217 11 chr7D.!!$R1 4216
2 TraesCS7A01G219000 chr7B 153447535 153451980 4445 True 622.333333 2826 91.022917 1 4217 12 chr7B.!!$R1 4216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 683 0.320771 GCTGCACTCCCCCGTATATG 60.321 60.0 0.00 0.0 0.00 1.78 F
1835 2050 0.108138 GGTAATCTGTCGCCACTGCT 60.108 55.0 0.00 0.0 34.43 4.24 F
3304 3925 0.033011 AGCACCAGATAGACCGGAGT 60.033 55.0 9.46 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 2493 0.391528 TCACCCAGCACGACATCATG 60.392 55.0 0.0 0.0 0.00 3.07 R
3539 4160 0.179097 GACGAAGAGCCACCATCCTC 60.179 60.0 0.0 0.0 0.00 3.71 R
4529 5156 0.036388 ATGTGGGGCACGTCTTACAG 60.036 55.0 0.0 0.0 37.14 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.596749 CAATCTACACTTATCTTTTGGACGT 57.403 36.000 0.00 0.00 0.00 4.34
42 44 2.261345 CGTTTAAAGCATGCATGGTGG 58.739 47.619 30.51 12.68 38.70 4.61
54 56 1.966295 GCATGGTGGGATGGTGGAAAT 60.966 52.381 0.00 0.00 0.00 2.17
55 57 2.689421 GCATGGTGGGATGGTGGAAATA 60.689 50.000 0.00 0.00 0.00 1.40
56 58 2.818751 TGGTGGGATGGTGGAAATAC 57.181 50.000 0.00 0.00 0.00 1.89
171 173 7.969536 ATATGCCAATGAATATCTATACGGC 57.030 36.000 0.00 0.00 37.52 5.68
176 178 5.399596 CCAATGAATATCTATACGGCGATCG 59.600 44.000 16.62 11.69 45.88 3.69
193 195 4.702392 CGATCGAAAGTCAAACCAAAGAG 58.298 43.478 10.26 0.00 0.00 2.85
203 205 3.444742 TCAAACCAAAGAGCATATGCCAG 59.555 43.478 23.96 9.40 43.38 4.85
217 219 3.970410 CCAGTGGCTCCTTGGGCA 61.970 66.667 0.00 0.00 39.45 5.36
220 223 1.000396 AGTGGCTCCTTGGGCATTC 60.000 57.895 0.00 0.00 43.39 2.67
224 227 1.755783 GCTCCTTGGGCATTCCTGG 60.756 63.158 0.00 0.00 36.20 4.45
291 294 1.675641 CCTTGGCAGCTACCACACC 60.676 63.158 4.73 0.00 40.19 4.16
300 303 1.002659 AGCTACCACACCATACGCAAA 59.997 47.619 0.00 0.00 0.00 3.68
313 316 1.196200 ACGCAAACAAACAACATCGC 58.804 45.000 0.00 0.00 0.00 4.58
321 324 1.032014 AAACAACATCGCTGGTGCTT 58.968 45.000 3.78 0.00 44.37 3.91
345 348 3.225177 AGGAACTCGATATCCCGAAGA 57.775 47.619 11.82 0.00 38.17 2.87
346 349 3.768878 AGGAACTCGATATCCCGAAGAT 58.231 45.455 11.82 0.00 38.17 2.40
347 350 4.919793 AGGAACTCGATATCCCGAAGATA 58.080 43.478 11.82 0.00 41.73 1.98
351 354 7.283580 AGGAACTCGATATCCCGAAGATAATAG 59.716 40.741 11.82 1.84 40.86 1.73
360 363 6.309712 TCCCGAAGATAATAGTAACTCGTG 57.690 41.667 0.00 0.00 0.00 4.35
433 623 4.022329 ACAAGCAATAAAAACCCCGAGAAG 60.022 41.667 0.00 0.00 0.00 2.85
451 641 2.897207 CGACGGATACCCAGCCAA 59.103 61.111 0.00 0.00 0.00 4.52
455 645 2.203209 GGATACCCAGCCAAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
488 679 3.075005 GAGCTGCACTCCCCCGTA 61.075 66.667 1.02 0.00 39.75 4.02
489 680 2.365635 AGCTGCACTCCCCCGTAT 60.366 61.111 1.02 0.00 0.00 3.06
490 681 1.075525 AGCTGCACTCCCCCGTATA 60.076 57.895 1.02 0.00 0.00 1.47
491 682 0.471971 AGCTGCACTCCCCCGTATAT 60.472 55.000 1.02 0.00 0.00 0.86
492 683 0.320771 GCTGCACTCCCCCGTATATG 60.321 60.000 0.00 0.00 0.00 1.78
493 684 0.320771 CTGCACTCCCCCGTATATGC 60.321 60.000 0.00 0.00 0.00 3.14
567 758 1.263217 GTATCGCCAGCGTTTAATGGG 59.737 52.381 12.32 0.00 40.74 4.00
847 1056 4.993905 TCATATATATGCGTCCGTTCCTG 58.006 43.478 16.59 0.00 33.76 3.86
854 1064 1.738099 CGTCCGTTCCTGCTCCTTG 60.738 63.158 0.00 0.00 0.00 3.61
884 1094 3.686045 CCGGCGGCTATCCCTCTC 61.686 72.222 15.42 0.00 0.00 3.20
898 1108 1.608717 CCTCTCCCACTTCTCCACCG 61.609 65.000 0.00 0.00 0.00 4.94
900 1110 2.525629 TCCCACTTCTCCACCGCA 60.526 61.111 0.00 0.00 0.00 5.69
1072 1287 2.284478 TGCAGGCTGCCTCTCTCT 60.284 61.111 34.58 0.00 44.23 3.10
1141 1356 2.989639 CTGCCCGGATTGGAGACA 59.010 61.111 0.73 0.00 42.00 3.41
1246 1461 3.058160 CTGCCGCCTTCACCCAAG 61.058 66.667 0.00 0.00 0.00 3.61
1247 1462 3.551496 CTGCCGCCTTCACCCAAGA 62.551 63.158 0.00 0.00 33.29 3.02
1248 1463 2.747855 GCCGCCTTCACCCAAGAG 60.748 66.667 0.00 0.00 33.29 2.85
1249 1464 2.045926 CCGCCTTCACCCAAGAGG 60.046 66.667 0.00 0.00 43.78 3.69
1277 1492 3.907260 CTCCTGCTGCCGCCTTCAA 62.907 63.158 0.00 0.00 34.43 2.69
1318 1533 3.365265 CTGCCGCCTTCACCCAAC 61.365 66.667 0.00 0.00 0.00 3.77
1513 1728 3.117701 AGAGGAAGACGGAGATGATCTGA 60.118 47.826 0.00 0.00 37.76 3.27
1520 1735 2.898612 ACGGAGATGATCTGATGCTCAT 59.101 45.455 0.00 0.00 37.76 2.90
1799 2014 0.878523 AGCAACGCTAAACTGTCGCA 60.879 50.000 0.00 0.00 36.99 5.10
1835 2050 0.108138 GGTAATCTGTCGCCACTGCT 60.108 55.000 0.00 0.00 34.43 4.24
1965 2180 0.878523 TGCTCACGCTTAAGCAACGT 60.879 50.000 26.29 13.79 45.09 3.99
2084 2299 0.525668 GGTGTCGTGCTCGGTGATAG 60.526 60.000 8.49 0.00 37.69 2.08
2256 2471 2.740714 CCGTAGCGAACAAGGCAGC 61.741 63.158 0.00 0.00 0.00 5.25
2277 2492 0.911769 CCCTTGTGGAGATGGCAGTA 59.088 55.000 0.00 0.00 35.39 2.74
2278 2493 1.407437 CCCTTGTGGAGATGGCAGTAC 60.407 57.143 0.00 0.00 35.39 2.73
2292 2507 1.325640 GCAGTACATGATGTCGTGCTG 59.674 52.381 19.30 15.52 45.35 4.41
2862 3483 2.249413 CTTGCGGAGATGGCAGGAGT 62.249 60.000 0.00 0.00 42.12 3.85
2931 3552 1.450134 GAGATGATGCGGTGCACCA 60.450 57.895 34.16 17.67 43.04 4.17
2978 3599 0.461548 GATGGCAGGAGATGACGTGA 59.538 55.000 0.00 0.00 41.39 4.35
2998 3619 4.722193 CTCCCAAACGAGCACCAT 57.278 55.556 0.00 0.00 0.00 3.55
3259 3880 1.679977 GGCCCAGAATGAGCAAGCA 60.680 57.895 0.00 0.00 39.69 3.91
3260 3881 1.664321 GGCCCAGAATGAGCAAGCAG 61.664 60.000 0.00 0.00 39.69 4.24
3261 3882 1.807886 CCCAGAATGAGCAAGCAGC 59.192 57.895 0.00 0.00 39.69 5.25
3287 3908 2.487532 GCATGGGAGGCACATCAGC 61.488 63.158 0.00 0.00 0.00 4.26
3304 3925 0.033011 AGCACCAGATAGACCGGAGT 60.033 55.000 9.46 0.00 0.00 3.85
3376 3997 2.833244 CCAAAAAGGCCAGAACCCA 58.167 52.632 5.01 0.00 0.00 4.51
3517 4138 3.136750 CAGGAGGCTGGAGGATCG 58.863 66.667 0.00 0.00 34.37 3.69
3554 4178 0.252881 TGAGGAGGATGGTGGCTCTT 60.253 55.000 0.00 0.00 0.00 2.85
3560 4184 1.519455 GATGGTGGCTCTTCGTCGG 60.519 63.158 0.00 0.00 0.00 4.79
3677 4301 7.672240 ACCTTTTGTGTGTTTTAGGAAAAAGA 58.328 30.769 6.56 0.00 35.96 2.52
3844 4470 1.614996 AAATTCGCCACCATGACACA 58.385 45.000 0.00 0.00 0.00 3.72
3845 4471 0.881118 AATTCGCCACCATGACACAC 59.119 50.000 0.00 0.00 0.00 3.82
3849 4475 0.796312 CGCCACCATGACACACTAAC 59.204 55.000 0.00 0.00 0.00 2.34
3919 4546 6.642950 CGTCTATGGATCAGAATTAGTTCCAC 59.357 42.308 10.69 1.49 37.60 4.02
3960 4587 5.643777 AGTAGAATCGTGCTTGCAGTAAATT 59.356 36.000 0.00 0.00 0.00 1.82
4181 4808 7.919313 TGTGACGTATTCTTTATTATCCGAC 57.081 36.000 0.00 0.00 0.00 4.79
4217 4844 7.067421 TGCTAAAGGATAGTCAGGTACATACT 58.933 38.462 0.00 0.00 0.00 2.12
4218 4845 7.014326 TGCTAAAGGATAGTCAGGTACATACTG 59.986 40.741 0.00 0.00 37.30 2.74
4219 4846 7.014422 GCTAAAGGATAGTCAGGTACATACTGT 59.986 40.741 0.00 0.00 37.25 3.55
4220 4847 6.963083 AAGGATAGTCAGGTACATACTGTC 57.037 41.667 0.00 2.78 37.25 3.51
4221 4848 6.014771 AGGATAGTCAGGTACATACTGTCA 57.985 41.667 15.23 0.00 36.02 3.58
4222 4849 6.432581 AGGATAGTCAGGTACATACTGTCAA 58.567 40.000 15.23 0.00 36.02 3.18
4223 4850 6.547880 AGGATAGTCAGGTACATACTGTCAAG 59.452 42.308 15.23 0.00 36.02 3.02
4224 4851 6.239064 GGATAGTCAGGTACATACTGTCAAGG 60.239 46.154 15.23 0.00 36.02 3.61
4225 4852 3.769844 AGTCAGGTACATACTGTCAAGGG 59.230 47.826 0.00 0.00 37.25 3.95
4226 4853 2.500098 TCAGGTACATACTGTCAAGGGC 59.500 50.000 0.00 0.00 37.25 5.19
4227 4854 1.838077 AGGTACATACTGTCAAGGGCC 59.162 52.381 0.00 0.00 0.00 5.80
4228 4855 1.838077 GGTACATACTGTCAAGGGCCT 59.162 52.381 0.00 0.00 0.00 5.19
4229 4856 2.158943 GGTACATACTGTCAAGGGCCTC 60.159 54.545 6.46 0.00 0.00 4.70
4230 4857 0.537188 ACATACTGTCAAGGGCCTCG 59.463 55.000 6.46 0.00 0.00 4.63
4231 4858 0.179073 CATACTGTCAAGGGCCTCGG 60.179 60.000 6.46 1.47 0.00 4.63
4232 4859 0.617820 ATACTGTCAAGGGCCTCGGT 60.618 55.000 6.46 8.61 0.00 4.69
4233 4860 1.541310 TACTGTCAAGGGCCTCGGTG 61.541 60.000 6.46 0.81 0.00 4.94
4234 4861 4.329545 TGTCAAGGGCCTCGGTGC 62.330 66.667 6.46 0.00 0.00 5.01
4242 4869 4.329545 GCCTCGGTGCCCAAGACA 62.330 66.667 0.00 0.00 0.00 3.41
4243 4870 2.046892 CCTCGGTGCCCAAGACAG 60.047 66.667 0.00 0.00 0.00 3.51
4244 4871 2.743928 CTCGGTGCCCAAGACAGC 60.744 66.667 0.00 0.00 0.00 4.40
4245 4872 3.535629 CTCGGTGCCCAAGACAGCA 62.536 63.158 0.00 0.00 35.27 4.41
4246 4873 3.052082 CGGTGCCCAAGACAGCAG 61.052 66.667 0.00 0.00 40.28 4.24
4247 4874 2.674380 GGTGCCCAAGACAGCAGG 60.674 66.667 0.00 0.00 40.28 4.85
4248 4875 2.431683 GTGCCCAAGACAGCAGGA 59.568 61.111 0.00 0.00 40.28 3.86
4249 4876 1.968540 GTGCCCAAGACAGCAGGAC 60.969 63.158 0.00 0.00 40.28 3.85
4250 4877 2.360475 GCCCAAGACAGCAGGACC 60.360 66.667 0.00 0.00 0.00 4.46
4251 4878 2.900106 GCCCAAGACAGCAGGACCT 61.900 63.158 0.00 0.00 0.00 3.85
4252 4879 1.298014 CCCAAGACAGCAGGACCTC 59.702 63.158 0.00 0.00 0.00 3.85
4253 4880 1.079543 CCAAGACAGCAGGACCTCG 60.080 63.158 0.00 0.00 0.00 4.63
4254 4881 1.536073 CCAAGACAGCAGGACCTCGA 61.536 60.000 0.00 0.00 0.00 4.04
4255 4882 0.389166 CAAGACAGCAGGACCTCGAC 60.389 60.000 0.00 0.00 0.00 4.20
4256 4883 0.540830 AAGACAGCAGGACCTCGACT 60.541 55.000 0.00 0.00 0.00 4.18
4257 4884 0.328592 AGACAGCAGGACCTCGACTA 59.671 55.000 0.00 0.00 0.00 2.59
4258 4885 0.452585 GACAGCAGGACCTCGACTAC 59.547 60.000 0.00 0.00 0.00 2.73
4259 4886 1.306642 ACAGCAGGACCTCGACTACG 61.307 60.000 0.00 0.00 41.26 3.51
4260 4887 1.002379 AGCAGGACCTCGACTACGT 60.002 57.895 0.00 0.00 40.69 3.57
4261 4888 0.251354 AGCAGGACCTCGACTACGTA 59.749 55.000 0.00 0.00 40.69 3.57
4262 4889 0.656785 GCAGGACCTCGACTACGTAG 59.343 60.000 20.97 20.97 40.69 3.51
4264 4891 2.354259 CAGGACCTCGACTACGTAGTT 58.646 52.381 27.96 12.90 37.78 2.24
4265 4892 2.351111 CAGGACCTCGACTACGTAGTTC 59.649 54.545 27.96 20.05 37.78 3.01
4266 4893 1.325943 GGACCTCGACTACGTAGTTCG 59.674 57.143 27.96 27.46 37.78 3.95
4275 4902 4.258781 CGTAGTTCGTAGTCGCGG 57.741 61.111 6.13 0.00 36.96 6.46
4276 4903 1.421485 CGTAGTTCGTAGTCGCGGT 59.579 57.895 6.13 0.00 36.96 5.68
4277 4904 0.854853 CGTAGTTCGTAGTCGCGGTG 60.855 60.000 6.13 0.00 36.96 4.94
4278 4905 0.522076 GTAGTTCGTAGTCGCGGTGG 60.522 60.000 6.13 0.00 36.96 4.61
4279 4906 0.673333 TAGTTCGTAGTCGCGGTGGA 60.673 55.000 6.13 0.00 36.96 4.02
4280 4907 1.138247 GTTCGTAGTCGCGGTGGAT 59.862 57.895 6.13 0.00 36.96 3.41
4281 4908 0.378257 GTTCGTAGTCGCGGTGGATA 59.622 55.000 6.13 0.00 36.96 2.59
4282 4909 0.659427 TTCGTAGTCGCGGTGGATAG 59.341 55.000 6.13 0.00 36.96 2.08
4283 4910 1.162181 TCGTAGTCGCGGTGGATAGG 61.162 60.000 6.13 0.00 36.96 2.57
4284 4911 1.162181 CGTAGTCGCGGTGGATAGGA 61.162 60.000 6.13 0.00 0.00 2.94
4285 4912 0.592148 GTAGTCGCGGTGGATAGGAG 59.408 60.000 6.13 0.00 0.00 3.69
4286 4913 1.170919 TAGTCGCGGTGGATAGGAGC 61.171 60.000 6.13 0.00 0.00 4.70
4290 4917 3.759544 CGGTGGATAGGAGCGCTA 58.240 61.111 11.50 0.00 0.00 4.26
4291 4918 1.581954 CGGTGGATAGGAGCGCTAG 59.418 63.158 11.50 0.00 0.00 3.42
4292 4919 1.867919 CGGTGGATAGGAGCGCTAGG 61.868 65.000 11.50 0.00 0.00 3.02
4293 4920 1.536943 GGTGGATAGGAGCGCTAGGG 61.537 65.000 11.50 1.65 0.00 3.53
4294 4921 0.828343 GTGGATAGGAGCGCTAGGGT 60.828 60.000 11.50 0.00 0.00 4.34
4295 4922 0.105658 TGGATAGGAGCGCTAGGGTT 60.106 55.000 11.50 1.59 0.00 4.11
4296 4923 1.049402 GGATAGGAGCGCTAGGGTTT 58.951 55.000 11.50 0.00 0.00 3.27
4297 4924 1.416772 GGATAGGAGCGCTAGGGTTTT 59.583 52.381 11.50 0.00 0.00 2.43
4298 4925 2.158798 GGATAGGAGCGCTAGGGTTTTT 60.159 50.000 11.50 0.00 0.00 1.94
4299 4926 2.396590 TAGGAGCGCTAGGGTTTTTG 57.603 50.000 11.50 0.00 0.00 2.44
4300 4927 0.960861 AGGAGCGCTAGGGTTTTTGC 60.961 55.000 11.50 0.00 0.00 3.68
4301 4928 1.506718 GAGCGCTAGGGTTTTTGCC 59.493 57.895 11.50 0.00 0.00 4.52
4302 4929 0.960861 GAGCGCTAGGGTTTTTGCCT 60.961 55.000 11.50 0.00 0.00 4.75
4303 4930 1.212751 GCGCTAGGGTTTTTGCCTG 59.787 57.895 8.77 0.00 0.00 4.85
4304 4931 1.883021 CGCTAGGGTTTTTGCCTGG 59.117 57.895 0.00 0.00 0.00 4.45
4305 4932 1.591703 GCTAGGGTTTTTGCCTGGC 59.408 57.895 12.87 12.87 0.00 4.85
4306 4933 0.900182 GCTAGGGTTTTTGCCTGGCT 60.900 55.000 21.03 0.00 35.64 4.75
4307 4934 0.890683 CTAGGGTTTTTGCCTGGCTG 59.109 55.000 21.03 0.00 0.00 4.85
4308 4935 1.184970 TAGGGTTTTTGCCTGGCTGC 61.185 55.000 21.03 5.23 0.00 5.25
4309 4936 2.510551 GGGTTTTTGCCTGGCTGCT 61.511 57.895 21.03 0.00 0.00 4.24
4310 4937 1.005748 GGTTTTTGCCTGGCTGCTC 60.006 57.895 21.03 6.57 0.00 4.26
4311 4938 1.466851 GGTTTTTGCCTGGCTGCTCT 61.467 55.000 21.03 0.00 0.00 4.09
4312 4939 1.247567 GTTTTTGCCTGGCTGCTCTA 58.752 50.000 21.03 0.00 0.00 2.43
4313 4940 1.821136 GTTTTTGCCTGGCTGCTCTAT 59.179 47.619 21.03 0.00 0.00 1.98
4314 4941 1.466856 TTTTGCCTGGCTGCTCTATG 58.533 50.000 21.03 0.00 0.00 2.23
4315 4942 0.620030 TTTGCCTGGCTGCTCTATGA 59.380 50.000 21.03 0.00 0.00 2.15
4316 4943 0.841961 TTGCCTGGCTGCTCTATGAT 59.158 50.000 21.03 0.00 0.00 2.45
4317 4944 0.108019 TGCCTGGCTGCTCTATGATG 59.892 55.000 21.03 0.00 0.00 3.07
4318 4945 1.235948 GCCTGGCTGCTCTATGATGC 61.236 60.000 12.43 0.00 0.00 3.91
4319 4946 0.949588 CCTGGCTGCTCTATGATGCG 60.950 60.000 0.00 0.00 0.00 4.73
4320 4947 0.949588 CTGGCTGCTCTATGATGCGG 60.950 60.000 0.00 0.00 38.49 5.69
4321 4948 1.670406 GGCTGCTCTATGATGCGGG 60.670 63.158 0.00 0.00 36.19 6.13
4322 4949 1.368950 GCTGCTCTATGATGCGGGA 59.631 57.895 0.00 0.00 36.19 5.14
4323 4950 0.669932 GCTGCTCTATGATGCGGGAG 60.670 60.000 0.00 0.00 36.19 4.30
4324 4951 0.037512 CTGCTCTATGATGCGGGAGG 60.038 60.000 0.00 0.00 32.37 4.30
4325 4952 1.294780 GCTCTATGATGCGGGAGGG 59.705 63.158 0.00 0.00 0.00 4.30
4326 4953 1.188219 GCTCTATGATGCGGGAGGGA 61.188 60.000 0.00 0.00 0.00 4.20
4327 4954 1.342074 CTCTATGATGCGGGAGGGAA 58.658 55.000 0.00 0.00 0.00 3.97
4328 4955 1.694150 CTCTATGATGCGGGAGGGAAA 59.306 52.381 0.00 0.00 0.00 3.13
4329 4956 1.694150 TCTATGATGCGGGAGGGAAAG 59.306 52.381 0.00 0.00 0.00 2.62
4330 4957 1.694150 CTATGATGCGGGAGGGAAAGA 59.306 52.381 0.00 0.00 0.00 2.52
4331 4958 1.143813 ATGATGCGGGAGGGAAAGAT 58.856 50.000 0.00 0.00 0.00 2.40
4332 4959 1.801242 TGATGCGGGAGGGAAAGATA 58.199 50.000 0.00 0.00 0.00 1.98
4333 4960 1.694150 TGATGCGGGAGGGAAAGATAG 59.306 52.381 0.00 0.00 0.00 2.08
4334 4961 1.971357 GATGCGGGAGGGAAAGATAGA 59.029 52.381 0.00 0.00 0.00 1.98
4335 4962 1.874129 TGCGGGAGGGAAAGATAGAA 58.126 50.000 0.00 0.00 0.00 2.10
4336 4963 1.762957 TGCGGGAGGGAAAGATAGAAG 59.237 52.381 0.00 0.00 0.00 2.85
4337 4964 1.070914 GCGGGAGGGAAAGATAGAAGG 59.929 57.143 0.00 0.00 0.00 3.46
4338 4965 2.679082 CGGGAGGGAAAGATAGAAGGA 58.321 52.381 0.00 0.00 0.00 3.36
4339 4966 3.039011 CGGGAGGGAAAGATAGAAGGAA 58.961 50.000 0.00 0.00 0.00 3.36
4340 4967 3.454812 CGGGAGGGAAAGATAGAAGGAAA 59.545 47.826 0.00 0.00 0.00 3.13
4341 4968 4.103311 CGGGAGGGAAAGATAGAAGGAAAT 59.897 45.833 0.00 0.00 0.00 2.17
4342 4969 5.307196 CGGGAGGGAAAGATAGAAGGAAATA 59.693 44.000 0.00 0.00 0.00 1.40
4343 4970 6.183361 CGGGAGGGAAAGATAGAAGGAAATAA 60.183 42.308 0.00 0.00 0.00 1.40
4344 4971 6.999272 GGGAGGGAAAGATAGAAGGAAATAAC 59.001 42.308 0.00 0.00 0.00 1.89
4345 4972 7.147284 GGGAGGGAAAGATAGAAGGAAATAACT 60.147 40.741 0.00 0.00 0.00 2.24
4346 4973 8.275758 GGAGGGAAAGATAGAAGGAAATAACTT 58.724 37.037 0.00 0.00 0.00 2.66
4347 4974 9.688091 GAGGGAAAGATAGAAGGAAATAACTTT 57.312 33.333 0.00 0.00 29.74 2.66
4359 4986 9.967346 GAAGGAAATAACTTTATTGCTTATCCC 57.033 33.333 0.65 0.00 33.85 3.85
4360 4987 9.715119 AAGGAAATAACTTTATTGCTTATCCCT 57.285 29.630 0.65 0.00 33.85 4.20
4380 5007 5.871396 CCTAAAGGGTGCTAACTATCTGA 57.129 43.478 0.00 0.00 0.00 3.27
4381 5008 6.426646 CCTAAAGGGTGCTAACTATCTGAT 57.573 41.667 0.00 0.00 0.00 2.90
4382 5009 7.540474 CCTAAAGGGTGCTAACTATCTGATA 57.460 40.000 0.00 0.00 0.00 2.15
4383 5010 8.140112 CCTAAAGGGTGCTAACTATCTGATAT 57.860 38.462 0.00 0.00 0.00 1.63
4384 5011 9.256228 CCTAAAGGGTGCTAACTATCTGATATA 57.744 37.037 0.00 0.00 0.00 0.86
4391 5018 9.535878 GGTGCTAACTATCTGATATATAAAGGC 57.464 37.037 0.00 0.00 0.00 4.35
4392 5019 9.535878 GTGCTAACTATCTGATATATAAAGGCC 57.464 37.037 0.00 0.00 0.00 5.19
4393 5020 8.705594 TGCTAACTATCTGATATATAAAGGCCC 58.294 37.037 0.00 0.00 0.00 5.80
4394 5021 8.151596 GCTAACTATCTGATATATAAAGGCCCC 58.848 40.741 0.00 0.00 0.00 5.80
4395 5022 9.213777 CTAACTATCTGATATATAAAGGCCCCA 57.786 37.037 0.00 0.00 0.00 4.96
4396 5023 8.644432 AACTATCTGATATATAAAGGCCCCAT 57.356 34.615 0.00 0.00 0.00 4.00
4397 5024 8.038862 ACTATCTGATATATAAAGGCCCCATG 57.961 38.462 0.00 0.00 0.00 3.66
4398 5025 5.715439 TCTGATATATAAAGGCCCCATGG 57.285 43.478 4.14 4.14 0.00 3.66
4412 5039 3.642141 CCCCATGGGCTAATAACAAACT 58.358 45.455 26.87 0.00 35.35 2.66
4413 5040 4.798882 CCCCATGGGCTAATAACAAACTA 58.201 43.478 26.87 0.00 35.35 2.24
4414 5041 4.827284 CCCCATGGGCTAATAACAAACTAG 59.173 45.833 26.87 1.36 35.35 2.57
4415 5042 5.398581 CCCCATGGGCTAATAACAAACTAGA 60.399 44.000 26.87 0.00 35.35 2.43
4416 5043 6.126409 CCCATGGGCTAATAACAAACTAGAA 58.874 40.000 20.41 0.00 0.00 2.10
4417 5044 6.605594 CCCATGGGCTAATAACAAACTAGAAA 59.394 38.462 20.41 0.00 0.00 2.52
4418 5045 7.416326 CCCATGGGCTAATAACAAACTAGAAAC 60.416 40.741 20.41 0.00 0.00 2.78
4419 5046 7.416326 CCATGGGCTAATAACAAACTAGAAACC 60.416 40.741 2.85 0.00 0.00 3.27
4420 5047 6.786122 TGGGCTAATAACAAACTAGAAACCT 58.214 36.000 0.00 0.00 0.00 3.50
4421 5048 7.920227 TGGGCTAATAACAAACTAGAAACCTA 58.080 34.615 0.00 0.00 0.00 3.08
4422 5049 8.554011 TGGGCTAATAACAAACTAGAAACCTAT 58.446 33.333 0.00 0.00 0.00 2.57
4453 5080 9.819267 AATAAACTAGTCTAGGAACTAATGTGC 57.181 33.333 11.61 0.00 42.17 4.57
4454 5081 5.855740 ACTAGTCTAGGAACTAATGTGCC 57.144 43.478 11.61 0.00 42.17 5.01
4455 5082 4.650131 ACTAGTCTAGGAACTAATGTGCCC 59.350 45.833 11.61 0.00 43.18 5.36
4456 5083 2.431057 AGTCTAGGAACTAATGTGCCCG 59.569 50.000 0.00 0.00 43.18 6.13
4457 5084 1.760613 TCTAGGAACTAATGTGCCCGG 59.239 52.381 0.00 0.00 43.18 5.73
4458 5085 1.760613 CTAGGAACTAATGTGCCCGGA 59.239 52.381 0.73 0.00 43.18 5.14
4459 5086 1.213296 AGGAACTAATGTGCCCGGAT 58.787 50.000 0.73 0.00 43.18 4.18
4460 5087 1.141053 AGGAACTAATGTGCCCGGATC 59.859 52.381 0.73 0.00 43.18 3.36
4461 5088 1.134220 GGAACTAATGTGCCCGGATCA 60.134 52.381 0.73 0.00 35.79 2.92
4462 5089 2.213499 GAACTAATGTGCCCGGATCAG 58.787 52.381 0.73 0.00 0.00 2.90
4463 5090 0.469917 ACTAATGTGCCCGGATCAGG 59.530 55.000 0.73 4.68 0.00 3.86
4464 5091 0.758734 CTAATGTGCCCGGATCAGGA 59.241 55.000 14.13 0.00 0.00 3.86
4465 5092 0.468226 TAATGTGCCCGGATCAGGAC 59.532 55.000 14.13 1.66 0.00 3.85
4466 5093 1.274703 AATGTGCCCGGATCAGGACT 61.275 55.000 14.13 0.00 0.00 3.85
4467 5094 1.690219 ATGTGCCCGGATCAGGACTC 61.690 60.000 14.13 3.27 0.00 3.36
4468 5095 2.764128 TGCCCGGATCAGGACTCC 60.764 66.667 14.13 0.00 0.00 3.85
4469 5096 2.444895 GCCCGGATCAGGACTCCT 60.445 66.667 14.13 0.00 0.00 3.69
4480 5107 2.267324 GACTCCTGTCCAGCCTGC 59.733 66.667 0.00 0.00 37.24 4.85
4481 5108 3.655810 GACTCCTGTCCAGCCTGCG 62.656 68.421 0.00 0.00 37.24 5.18
4485 5112 4.711949 CTGTCCAGCCTGCGCCTT 62.712 66.667 4.18 0.00 34.57 4.35
4493 5120 3.515286 CCTGCGCCTTGCCTGATG 61.515 66.667 4.18 0.00 45.60 3.07
4494 5121 4.189188 CTGCGCCTTGCCTGATGC 62.189 66.667 4.18 0.00 45.60 3.91
4534 5161 4.728102 CGCGGCCCACGTCTGTAA 62.728 66.667 0.00 0.00 46.52 2.41
4535 5162 2.813908 GCGGCCCACGTCTGTAAG 60.814 66.667 0.00 0.00 46.52 2.34
4536 5163 2.967397 CGGCCCACGTCTGTAAGA 59.033 61.111 0.00 0.00 43.69 2.10
4545 5172 4.201523 TCTGTAAGACGTGCCCCA 57.798 55.556 0.00 0.00 38.67 4.96
4546 5173 1.669440 TCTGTAAGACGTGCCCCAC 59.331 57.895 0.00 0.00 38.67 4.61
4547 5174 1.116536 TCTGTAAGACGTGCCCCACA 61.117 55.000 0.00 0.00 38.67 4.17
4548 5175 0.036388 CTGTAAGACGTGCCCCACAT 60.036 55.000 0.00 0.00 34.07 3.21
4549 5176 0.321210 TGTAAGACGTGCCCCACATG 60.321 55.000 0.00 0.00 41.41 3.21
4550 5177 0.036765 GTAAGACGTGCCCCACATGA 60.037 55.000 0.00 0.00 38.75 3.07
4551 5178 0.036765 TAAGACGTGCCCCACATGAC 60.037 55.000 0.00 0.00 38.75 3.06
4552 5179 2.031919 GACGTGCCCCACATGACA 59.968 61.111 0.00 0.00 38.75 3.58
4553 5180 1.377202 GACGTGCCCCACATGACAT 60.377 57.895 0.00 0.00 38.75 3.06
4554 5181 1.369091 GACGTGCCCCACATGACATC 61.369 60.000 0.00 0.00 38.75 3.06
4555 5182 1.078214 CGTGCCCCACATGACATCT 60.078 57.895 0.00 0.00 37.49 2.90
4556 5183 1.091771 CGTGCCCCACATGACATCTC 61.092 60.000 0.00 0.00 37.49 2.75
4557 5184 0.254178 GTGCCCCACATGACATCTCT 59.746 55.000 0.00 0.00 34.08 3.10
4558 5185 0.543277 TGCCCCACATGACATCTCTC 59.457 55.000 0.00 0.00 0.00 3.20
4559 5186 0.179034 GCCCCACATGACATCTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
4560 5187 0.471617 CCCCACATGACATCTCTCCC 59.528 60.000 0.00 0.00 0.00 4.30
4561 5188 0.471617 CCCACATGACATCTCTCCCC 59.528 60.000 0.00 0.00 0.00 4.81
4562 5189 0.471617 CCACATGACATCTCTCCCCC 59.528 60.000 0.00 0.00 0.00 5.40
4578 5205 4.200283 CCCCTCGACGAGCAGCTC 62.200 72.222 19.55 12.94 0.00 4.09
4595 5222 3.794690 TCGTCCTCGAGCTGAAAAG 57.205 52.632 6.99 0.00 41.35 2.27
4596 5223 0.388649 TCGTCCTCGAGCTGAAAAGC 60.389 55.000 6.99 0.00 41.35 3.51
4597 5224 1.678269 CGTCCTCGAGCTGAAAAGCG 61.678 60.000 6.99 0.00 40.27 4.68
4598 5225 1.079819 TCCTCGAGCTGAAAAGCGG 60.080 57.895 6.99 0.00 40.27 5.52
4599 5226 2.103042 CCTCGAGCTGAAAAGCGGG 61.103 63.158 6.99 0.00 40.27 6.13
4600 5227 2.047274 TCGAGCTGAAAAGCGGGG 60.047 61.111 0.00 0.00 40.27 5.73
4601 5228 2.358737 CGAGCTGAAAAGCGGGGT 60.359 61.111 0.00 0.00 40.27 4.95
4602 5229 1.079405 CGAGCTGAAAAGCGGGGTA 60.079 57.895 0.00 0.00 40.27 3.69
4603 5230 1.084370 CGAGCTGAAAAGCGGGGTAG 61.084 60.000 0.00 0.00 40.27 3.18
4604 5231 1.369839 GAGCTGAAAAGCGGGGTAGC 61.370 60.000 0.00 0.00 40.27 3.58
4605 5232 2.750888 GCTGAAAAGCGGGGTAGCG 61.751 63.158 0.00 0.00 43.00 4.26
4606 5233 2.744709 TGAAAAGCGGGGTAGCGC 60.745 61.111 0.00 0.00 43.00 5.92
4607 5234 2.436115 GAAAAGCGGGGTAGCGCT 60.436 61.111 17.26 17.26 43.88 5.92
4608 5235 2.436115 AAAAGCGGGGTAGCGCTC 60.436 61.111 16.34 5.63 40.89 5.03
4609 5236 4.814294 AAAGCGGGGTAGCGCTCG 62.814 66.667 16.34 13.35 40.89 5.03
4624 5251 1.767289 GCTCGACGAAACTGTCAAGA 58.233 50.000 0.00 0.00 38.84 3.02
4625 5252 2.329379 GCTCGACGAAACTGTCAAGAT 58.671 47.619 0.00 0.00 38.84 2.40
4626 5253 2.342948 GCTCGACGAAACTGTCAAGATC 59.657 50.000 0.00 0.00 38.84 2.75
4627 5254 2.917971 CTCGACGAAACTGTCAAGATCC 59.082 50.000 0.00 0.00 38.84 3.36
4628 5255 2.557056 TCGACGAAACTGTCAAGATCCT 59.443 45.455 0.00 0.00 38.84 3.24
4629 5256 2.917971 CGACGAAACTGTCAAGATCCTC 59.082 50.000 0.00 0.00 38.84 3.71
4630 5257 3.254892 GACGAAACTGTCAAGATCCTCC 58.745 50.000 0.00 0.00 38.75 4.30
4631 5258 2.028020 ACGAAACTGTCAAGATCCTCCC 60.028 50.000 0.00 0.00 0.00 4.30
4632 5259 2.028112 CGAAACTGTCAAGATCCTCCCA 60.028 50.000 0.00 0.00 0.00 4.37
4633 5260 3.369892 CGAAACTGTCAAGATCCTCCCAT 60.370 47.826 0.00 0.00 0.00 4.00
4634 5261 3.641434 AACTGTCAAGATCCTCCCATG 57.359 47.619 0.00 0.00 0.00 3.66
4635 5262 2.555664 ACTGTCAAGATCCTCCCATGT 58.444 47.619 0.00 0.00 0.00 3.21
4636 5263 3.724478 ACTGTCAAGATCCTCCCATGTA 58.276 45.455 0.00 0.00 0.00 2.29
4637 5264 3.708631 ACTGTCAAGATCCTCCCATGTAG 59.291 47.826 0.00 0.00 0.00 2.74
4638 5265 2.435805 TGTCAAGATCCTCCCATGTAGC 59.564 50.000 0.00 0.00 0.00 3.58
4639 5266 2.703007 GTCAAGATCCTCCCATGTAGCT 59.297 50.000 0.00 0.00 0.00 3.32
4640 5267 2.702478 TCAAGATCCTCCCATGTAGCTG 59.298 50.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.266922 TGCTTTAAACGTCCAAAAGATAAGT 57.733 32.000 16.82 0.00 33.05 2.24
24 25 2.533916 TCCCACCATGCATGCTTTAAA 58.466 42.857 21.69 0.00 0.00 1.52
42 44 5.685728 AGAAAGCTAGTATTTCCACCATCC 58.314 41.667 15.00 0.00 37.37 3.51
54 56 5.627040 GCAAAGGGCTAAGAGAAAGCTAGTA 60.627 44.000 0.00 0.00 39.97 1.82
55 57 4.837972 CAAAGGGCTAAGAGAAAGCTAGT 58.162 43.478 0.00 0.00 39.97 2.57
56 58 3.625313 GCAAAGGGCTAAGAGAAAGCTAG 59.375 47.826 0.00 0.00 39.97 3.42
103 105 2.603075 ATGGCCAATTGTGTAGTGGT 57.397 45.000 10.96 0.00 34.71 4.16
157 159 6.256686 ACTTTCGATCGCCGTATAGATATTC 58.743 40.000 11.09 0.00 39.75 1.75
171 173 4.702392 CTCTTTGGTTTGACTTTCGATCG 58.298 43.478 9.36 9.36 0.00 3.69
176 178 5.574443 GCATATGCTCTTTGGTTTGACTTTC 59.426 40.000 20.64 0.00 38.21 2.62
203 205 2.054453 GGAATGCCCAAGGAGCCAC 61.054 63.158 0.00 0.00 34.14 5.01
217 219 0.482446 TGCCTTTGACCACCAGGAAT 59.518 50.000 0.00 0.00 38.69 3.01
220 223 0.389025 GTTTGCCTTTGACCACCAGG 59.611 55.000 0.00 0.00 42.21 4.45
224 227 0.594796 CGCTGTTTGCCTTTGACCAC 60.595 55.000 0.00 0.00 38.78 4.16
291 294 3.181554 GCGATGTTGTTTGTTTGCGTATG 60.182 43.478 0.00 0.00 0.00 2.39
300 303 0.030638 GCACCAGCGATGTTGTTTGT 59.969 50.000 0.00 0.00 0.00 2.83
313 316 1.433534 GAGTTCCTCGAAAGCACCAG 58.566 55.000 0.00 0.00 0.00 4.00
351 354 9.549509 CTCTATCTGCTTATTATCACGAGTTAC 57.450 37.037 0.00 0.00 0.00 2.50
360 363 9.357652 CTTTGCTCTCTCTATCTGCTTATTATC 57.642 37.037 0.00 0.00 0.00 1.75
433 623 3.379865 TTGGCTGGGTATCCGTCGC 62.380 63.158 0.00 0.00 35.24 5.19
493 684 0.245266 TGAGTTGCCTTGCATGCATG 59.755 50.000 23.37 23.21 38.76 4.06
847 1056 2.747855 CTTCGGGTGGCAAGGAGC 60.748 66.667 0.00 0.00 44.65 4.70
883 1093 2.525629 TGCGGTGGAGAAGTGGGA 60.526 61.111 0.00 0.00 0.00 4.37
884 1094 2.046892 CTGCGGTGGAGAAGTGGG 60.047 66.667 0.00 0.00 0.00 4.61
904 1114 1.890979 CGATGGCTGCTTAGCTGGG 60.891 63.158 12.76 1.19 34.73 4.45
906 1116 2.541120 GGCGATGGCTGCTTAGCTG 61.541 63.158 5.60 6.22 39.81 4.24
907 1117 2.203126 GGCGATGGCTGCTTAGCT 60.203 61.111 5.60 0.00 39.81 3.32
908 1118 1.780025 GAAGGCGATGGCTGCTTAGC 61.780 60.000 0.00 0.00 38.81 3.09
947 1162 2.044620 AGGGGAGGGGATGGGTTC 59.955 66.667 0.00 0.00 0.00 3.62
1141 1356 6.086222 CGATCGGATCTTGACACAAAAATTT 58.914 36.000 15.50 0.00 0.00 1.82
1229 1444 3.058160 CTTGGGTGAAGGCGGCAG 61.058 66.667 13.08 0.00 0.00 4.85
1230 1445 3.551496 CTCTTGGGTGAAGGCGGCA 62.551 63.158 13.08 0.00 31.85 5.69
1231 1446 2.747855 CTCTTGGGTGAAGGCGGC 60.748 66.667 0.00 0.00 31.85 6.53
1232 1447 2.045926 CCTCTTGGGTGAAGGCGG 60.046 66.667 0.00 0.00 31.85 6.13
1242 1457 0.676151 GAGCAGTGAAGCCCTCTTGG 60.676 60.000 0.00 0.00 34.23 3.61
1243 1458 0.676151 GGAGCAGTGAAGCCCTCTTG 60.676 60.000 0.00 0.00 34.23 3.02
1244 1459 0.839853 AGGAGCAGTGAAGCCCTCTT 60.840 55.000 0.00 0.00 32.09 2.85
1245 1460 1.229464 AGGAGCAGTGAAGCCCTCT 60.229 57.895 0.00 0.00 32.09 3.69
1246 1461 1.078567 CAGGAGCAGTGAAGCCCTC 60.079 63.158 0.00 0.00 34.36 4.30
1247 1462 3.076092 CAGGAGCAGTGAAGCCCT 58.924 61.111 0.00 0.00 36.16 5.19
1248 1463 2.749441 GCAGGAGCAGTGAAGCCC 60.749 66.667 0.00 0.00 41.58 5.19
1249 1464 2.039405 CAGCAGGAGCAGTGAAGCC 61.039 63.158 0.00 0.00 45.49 4.35
1250 1465 2.688794 GCAGCAGGAGCAGTGAAGC 61.689 63.158 0.00 0.00 45.49 3.86
1251 1466 2.039405 GGCAGCAGGAGCAGTGAAG 61.039 63.158 0.00 0.00 45.49 3.02
1252 1467 2.033141 GGCAGCAGGAGCAGTGAA 59.967 61.111 0.00 0.00 45.49 3.18
1253 1468 4.383861 CGGCAGCAGGAGCAGTGA 62.384 66.667 0.00 0.00 45.49 3.41
1277 1492 1.073897 GCAGTGAAGCCCTCTTGGT 59.926 57.895 0.00 0.00 36.04 3.67
1332 1547 3.915575 GTGAAGGCATCAGCAGGG 58.084 61.111 0.00 0.00 44.61 4.45
1513 1728 3.119849 GCACCTTGTTTAACGATGAGCAT 60.120 43.478 5.50 0.00 0.00 3.79
1520 1735 3.537580 ACTTGAGCACCTTGTTTAACGA 58.462 40.909 0.00 0.00 0.00 3.85
1780 1995 0.878523 TGCGACAGTTTAGCGTTGCT 60.879 50.000 0.00 0.00 42.10 3.91
1965 2180 3.006133 TGCGCTACCCCATCACCA 61.006 61.111 9.73 0.00 0.00 4.17
2006 2221 2.164624 ACATCTAGTTCGCTGGACTCAC 59.835 50.000 0.00 0.00 37.55 3.51
2084 2299 0.607489 AGCAACAGAGGTGCCATGTC 60.607 55.000 3.01 0.00 0.00 3.06
2277 2492 0.674581 CACCCAGCACGACATCATGT 60.675 55.000 0.00 0.00 0.00 3.21
2278 2493 0.391528 TCACCCAGCACGACATCATG 60.392 55.000 0.00 0.00 0.00 3.07
2848 3469 1.211457 ACATCAACTCCTGCCATCTCC 59.789 52.381 0.00 0.00 0.00 3.71
2862 3483 0.246360 ATCACCGAGCACGACATCAA 59.754 50.000 4.70 0.00 42.66 2.57
2931 3552 1.739067 GGAACTGCCTTGTTCGCTAT 58.261 50.000 7.80 0.00 45.11 2.97
2998 3619 1.608055 CCATCACTGCAACAGAACCA 58.392 50.000 0.78 0.00 35.18 3.67
3138 3759 2.605837 TGTGTAAGAACGCTTGACCA 57.394 45.000 0.00 0.00 37.03 4.02
3259 3880 3.997400 CTCCCATGCTGCTGCTGCT 62.997 63.158 27.67 13.60 40.48 4.24
3260 3881 3.518998 CTCCCATGCTGCTGCTGC 61.519 66.667 22.51 22.51 40.48 5.25
3261 3882 2.829003 CCTCCCATGCTGCTGCTG 60.829 66.667 17.00 11.64 40.48 4.41
3304 3925 3.695830 CTGGTTACCAGCCTGTTTAGA 57.304 47.619 19.16 0.00 45.13 2.10
3361 3982 1.762370 CTGTTTGGGTTCTGGCCTTTT 59.238 47.619 3.32 0.00 0.00 2.27
3376 3997 1.413118 CTTTGGTTCCCTGCCTGTTT 58.587 50.000 0.00 0.00 0.00 2.83
3387 4008 4.038080 CGCCGCCACCTTTGGTTC 62.038 66.667 0.00 0.00 45.98 3.62
3403 4024 2.045926 CCTTGCCTGGGTTCCTCG 60.046 66.667 0.00 0.00 0.00 4.63
3514 4135 1.078848 GTGCTGCCTCTTGGACGAT 60.079 57.895 0.00 0.00 34.57 3.73
3517 4138 1.072159 AGTGTGCTGCCTCTTGGAC 59.928 57.895 0.00 0.00 34.57 4.02
3539 4160 0.179097 GACGAAGAGCCACCATCCTC 60.179 60.000 0.00 0.00 0.00 3.71
3577 4201 2.423446 CTGCGCCTACCTCCATCC 59.577 66.667 4.18 0.00 0.00 3.51
3677 4301 9.574516 CCTACAGTATGGCTTTATTTATTCCTT 57.425 33.333 0.00 0.00 43.62 3.36
3696 4320 3.761897 TGGTAATTTGCTTGCCTACAGT 58.238 40.909 0.00 0.00 40.11 3.55
4172 4799 3.405831 CATGCATGTGAGGTCGGATAAT 58.594 45.455 18.91 0.00 0.00 1.28
4181 4808 2.646930 TCCTTTAGCATGCATGTGAGG 58.353 47.619 26.79 24.30 0.00 3.86
4217 4844 4.329545 GCACCGAGGCCCTTGACA 62.330 66.667 0.00 0.00 0.00 3.58
4231 4858 1.968540 GTCCTGCTGTCTTGGGCAC 60.969 63.158 0.00 0.00 34.57 5.01
4232 4859 2.431683 GTCCTGCTGTCTTGGGCA 59.568 61.111 0.00 0.00 36.94 5.36
4233 4860 2.360475 GGTCCTGCTGTCTTGGGC 60.360 66.667 0.00 0.00 0.00 5.36
4234 4861 1.298014 GAGGTCCTGCTGTCTTGGG 59.702 63.158 0.00 0.00 0.00 4.12
4235 4862 1.079543 CGAGGTCCTGCTGTCTTGG 60.080 63.158 0.00 0.00 0.00 3.61
4236 4863 0.389166 GTCGAGGTCCTGCTGTCTTG 60.389 60.000 0.00 0.00 0.00 3.02
4237 4864 0.540830 AGTCGAGGTCCTGCTGTCTT 60.541 55.000 0.00 0.00 0.00 3.01
4238 4865 0.328592 TAGTCGAGGTCCTGCTGTCT 59.671 55.000 0.00 0.00 0.00 3.41
4239 4866 0.452585 GTAGTCGAGGTCCTGCTGTC 59.547 60.000 0.00 0.00 0.00 3.51
4240 4867 1.306642 CGTAGTCGAGGTCCTGCTGT 61.307 60.000 0.00 0.00 39.71 4.40
4241 4868 1.306642 ACGTAGTCGAGGTCCTGCTG 61.307 60.000 0.00 0.00 29.74 4.41
4242 4869 0.251354 TACGTAGTCGAGGTCCTGCT 59.749 55.000 0.00 0.00 43.93 4.24
4243 4870 0.656785 CTACGTAGTCGAGGTCCTGC 59.343 60.000 14.66 0.00 43.93 4.85
4244 4871 2.021355 ACTACGTAGTCGAGGTCCTG 57.979 55.000 22.45 0.00 43.93 3.86
4245 4872 2.626840 GAACTACGTAGTCGAGGTCCT 58.373 52.381 27.51 10.23 43.93 3.85
4246 4873 1.325943 CGAACTACGTAGTCGAGGTCC 59.674 57.143 27.51 10.41 43.93 4.46
4247 4874 2.710339 CGAACTACGTAGTCGAGGTC 57.290 55.000 27.51 19.08 43.93 3.85
4259 4886 0.522076 CCACCGCGACTACGAACTAC 60.522 60.000 8.23 0.00 42.66 2.73
4260 4887 0.673333 TCCACCGCGACTACGAACTA 60.673 55.000 8.23 0.00 42.66 2.24
4261 4888 1.310933 ATCCACCGCGACTACGAACT 61.311 55.000 8.23 0.00 42.66 3.01
4262 4889 0.378257 TATCCACCGCGACTACGAAC 59.622 55.000 8.23 0.00 42.66 3.95
4263 4890 0.659427 CTATCCACCGCGACTACGAA 59.341 55.000 8.23 0.00 42.66 3.85
4264 4891 1.162181 CCTATCCACCGCGACTACGA 61.162 60.000 8.23 0.00 42.66 3.43
4265 4892 1.162181 TCCTATCCACCGCGACTACG 61.162 60.000 8.23 0.00 42.93 3.51
4266 4893 0.592148 CTCCTATCCACCGCGACTAC 59.408 60.000 8.23 0.00 0.00 2.73
4267 4894 1.170919 GCTCCTATCCACCGCGACTA 61.171 60.000 8.23 0.00 0.00 2.59
4268 4895 2.491022 GCTCCTATCCACCGCGACT 61.491 63.158 8.23 0.00 0.00 4.18
4269 4896 2.027751 GCTCCTATCCACCGCGAC 59.972 66.667 8.23 0.00 0.00 5.19
4270 4897 3.592814 CGCTCCTATCCACCGCGA 61.593 66.667 8.23 0.00 45.99 5.87
4272 4899 2.479412 CTAGCGCTCCTATCCACCGC 62.479 65.000 16.34 0.00 44.47 5.68
4273 4900 1.581954 CTAGCGCTCCTATCCACCG 59.418 63.158 16.34 0.00 0.00 4.94
4274 4901 1.536943 CCCTAGCGCTCCTATCCACC 61.537 65.000 16.34 0.00 0.00 4.61
4275 4902 0.828343 ACCCTAGCGCTCCTATCCAC 60.828 60.000 16.34 0.00 0.00 4.02
4276 4903 0.105658 AACCCTAGCGCTCCTATCCA 60.106 55.000 16.34 0.00 0.00 3.41
4277 4904 1.049402 AAACCCTAGCGCTCCTATCC 58.951 55.000 16.34 0.00 0.00 2.59
4278 4905 2.872858 CAAAAACCCTAGCGCTCCTATC 59.127 50.000 16.34 0.00 0.00 2.08
4279 4906 2.919228 CAAAAACCCTAGCGCTCCTAT 58.081 47.619 16.34 0.00 0.00 2.57
4280 4907 1.677820 GCAAAAACCCTAGCGCTCCTA 60.678 52.381 16.34 0.00 0.00 2.94
4281 4908 0.960861 GCAAAAACCCTAGCGCTCCT 60.961 55.000 16.34 0.00 0.00 3.69
4282 4909 1.506718 GCAAAAACCCTAGCGCTCC 59.493 57.895 16.34 0.00 0.00 4.70
4283 4910 0.960861 AGGCAAAAACCCTAGCGCTC 60.961 55.000 16.34 0.00 0.00 5.03
4284 4911 1.074951 AGGCAAAAACCCTAGCGCT 59.925 52.632 17.26 17.26 0.00 5.92
4285 4912 1.212751 CAGGCAAAAACCCTAGCGC 59.787 57.895 0.00 0.00 0.00 5.92
4286 4913 1.883021 CCAGGCAAAAACCCTAGCG 59.117 57.895 0.00 0.00 0.00 4.26
4287 4914 0.900182 AGCCAGGCAAAAACCCTAGC 60.900 55.000 15.80 0.00 37.37 3.42
4288 4915 0.890683 CAGCCAGGCAAAAACCCTAG 59.109 55.000 15.80 0.00 0.00 3.02
4289 4916 1.184970 GCAGCCAGGCAAAAACCCTA 61.185 55.000 15.80 0.00 0.00 3.53
4290 4917 2.510551 GCAGCCAGGCAAAAACCCT 61.511 57.895 15.80 0.00 0.00 4.34
4291 4918 2.031012 GCAGCCAGGCAAAAACCC 59.969 61.111 15.80 0.00 0.00 4.11
4292 4919 1.005748 GAGCAGCCAGGCAAAAACC 60.006 57.895 15.80 0.00 35.83 3.27
4293 4920 1.247567 TAGAGCAGCCAGGCAAAAAC 58.752 50.000 15.80 0.71 35.83 2.43
4294 4921 1.820519 CATAGAGCAGCCAGGCAAAAA 59.179 47.619 15.80 0.00 35.83 1.94
4295 4922 1.004628 TCATAGAGCAGCCAGGCAAAA 59.995 47.619 15.80 0.00 35.83 2.44
4296 4923 0.620030 TCATAGAGCAGCCAGGCAAA 59.380 50.000 15.80 0.00 35.83 3.68
4297 4924 0.841961 ATCATAGAGCAGCCAGGCAA 59.158 50.000 15.80 0.00 35.83 4.52
4298 4925 0.108019 CATCATAGAGCAGCCAGGCA 59.892 55.000 15.80 0.00 35.83 4.75
4299 4926 1.235948 GCATCATAGAGCAGCCAGGC 61.236 60.000 1.84 1.84 0.00 4.85
4300 4927 0.949588 CGCATCATAGAGCAGCCAGG 60.950 60.000 0.00 0.00 0.00 4.45
4301 4928 0.949588 CCGCATCATAGAGCAGCCAG 60.950 60.000 0.00 0.00 0.00 4.85
4302 4929 1.070275 CCGCATCATAGAGCAGCCA 59.930 57.895 0.00 0.00 0.00 4.75
4303 4930 1.670406 CCCGCATCATAGAGCAGCC 60.670 63.158 0.00 0.00 0.00 4.85
4304 4931 0.669932 CTCCCGCATCATAGAGCAGC 60.670 60.000 0.00 0.00 0.00 5.25
4305 4932 0.037512 CCTCCCGCATCATAGAGCAG 60.038 60.000 0.00 0.00 0.00 4.24
4306 4933 1.475169 CCCTCCCGCATCATAGAGCA 61.475 60.000 0.00 0.00 0.00 4.26
4307 4934 1.188219 TCCCTCCCGCATCATAGAGC 61.188 60.000 0.00 0.00 0.00 4.09
4308 4935 1.342074 TTCCCTCCCGCATCATAGAG 58.658 55.000 0.00 0.00 0.00 2.43
4309 4936 1.694150 CTTTCCCTCCCGCATCATAGA 59.306 52.381 0.00 0.00 0.00 1.98
4310 4937 1.694150 TCTTTCCCTCCCGCATCATAG 59.306 52.381 0.00 0.00 0.00 2.23
4311 4938 1.801242 TCTTTCCCTCCCGCATCATA 58.199 50.000 0.00 0.00 0.00 2.15
4312 4939 1.143813 ATCTTTCCCTCCCGCATCAT 58.856 50.000 0.00 0.00 0.00 2.45
4313 4940 1.694150 CTATCTTTCCCTCCCGCATCA 59.306 52.381 0.00 0.00 0.00 3.07
4314 4941 1.971357 TCTATCTTTCCCTCCCGCATC 59.029 52.381 0.00 0.00 0.00 3.91
4315 4942 2.103153 TCTATCTTTCCCTCCCGCAT 57.897 50.000 0.00 0.00 0.00 4.73
4316 4943 1.762957 CTTCTATCTTTCCCTCCCGCA 59.237 52.381 0.00 0.00 0.00 5.69
4317 4944 1.070914 CCTTCTATCTTTCCCTCCCGC 59.929 57.143 0.00 0.00 0.00 6.13
4318 4945 2.679082 TCCTTCTATCTTTCCCTCCCG 58.321 52.381 0.00 0.00 0.00 5.14
4319 4946 5.654901 ATTTCCTTCTATCTTTCCCTCCC 57.345 43.478 0.00 0.00 0.00 4.30
4320 4947 7.807198 AGTTATTTCCTTCTATCTTTCCCTCC 58.193 38.462 0.00 0.00 0.00 4.30
4321 4948 9.688091 AAAGTTATTTCCTTCTATCTTTCCCTC 57.312 33.333 0.00 0.00 0.00 4.30
4333 4960 9.967346 GGGATAAGCAATAAAGTTATTTCCTTC 57.033 33.333 9.64 1.23 30.88 3.46
4334 4961 9.715119 AGGGATAAGCAATAAAGTTATTTCCTT 57.285 29.630 9.64 9.61 30.88 3.36
4358 4985 5.871396 TCAGATAGTTAGCACCCTTTAGG 57.129 43.478 0.00 0.00 43.78 2.69
4365 4992 9.535878 GCCTTTATATATCAGATAGTTAGCACC 57.464 37.037 0.00 0.00 0.00 5.01
4366 4993 9.535878 GGCCTTTATATATCAGATAGTTAGCAC 57.464 37.037 0.00 0.00 0.00 4.40
4367 4994 8.705594 GGGCCTTTATATATCAGATAGTTAGCA 58.294 37.037 0.84 0.00 0.00 3.49
4368 4995 8.151596 GGGGCCTTTATATATCAGATAGTTAGC 58.848 40.741 0.84 0.00 0.00 3.09
4369 4996 9.213777 TGGGGCCTTTATATATCAGATAGTTAG 57.786 37.037 0.84 0.00 0.00 2.34
4370 4997 9.744125 ATGGGGCCTTTATATATCAGATAGTTA 57.256 33.333 0.84 0.00 0.00 2.24
4371 4998 8.497745 CATGGGGCCTTTATATATCAGATAGTT 58.502 37.037 0.84 0.00 0.00 2.24
4372 4999 7.072961 CCATGGGGCCTTTATATATCAGATAGT 59.927 40.741 2.85 0.00 0.00 2.12
4373 5000 7.456725 CCATGGGGCCTTTATATATCAGATAG 58.543 42.308 2.85 0.00 0.00 2.08
4374 5001 6.332635 CCCATGGGGCCTTTATATATCAGATA 59.667 42.308 24.53 0.00 35.35 1.98
4375 5002 5.135020 CCCATGGGGCCTTTATATATCAGAT 59.865 44.000 24.53 0.00 35.35 2.90
4376 5003 4.478317 CCCATGGGGCCTTTATATATCAGA 59.522 45.833 24.53 0.00 35.35 3.27
4377 5004 4.796606 CCCATGGGGCCTTTATATATCAG 58.203 47.826 24.53 0.00 35.35 2.90
4378 5005 4.879295 CCCATGGGGCCTTTATATATCA 57.121 45.455 24.53 0.00 35.35 2.15
4392 5019 5.690865 TCTAGTTTGTTATTAGCCCATGGG 58.309 41.667 27.87 27.87 38.57 4.00
4393 5020 7.416326 GGTTTCTAGTTTGTTATTAGCCCATGG 60.416 40.741 4.14 4.14 0.00 3.66
4394 5021 7.339466 AGGTTTCTAGTTTGTTATTAGCCCATG 59.661 37.037 0.00 0.00 0.00 3.66
4395 5022 7.410991 AGGTTTCTAGTTTGTTATTAGCCCAT 58.589 34.615 0.00 0.00 0.00 4.00
4396 5023 6.786122 AGGTTTCTAGTTTGTTATTAGCCCA 58.214 36.000 0.00 0.00 0.00 5.36
4397 5024 8.975663 ATAGGTTTCTAGTTTGTTATTAGCCC 57.024 34.615 0.00 0.00 0.00 5.19
4427 5054 9.819267 GCACATTAGTTCCTAGACTAGTTTATT 57.181 33.333 8.68 0.00 33.91 1.40
4428 5055 8.422566 GGCACATTAGTTCCTAGACTAGTTTAT 58.577 37.037 8.68 0.00 33.91 1.40
4429 5056 7.147776 GGGCACATTAGTTCCTAGACTAGTTTA 60.148 40.741 8.68 0.00 33.91 2.01
4430 5057 6.351966 GGGCACATTAGTTCCTAGACTAGTTT 60.352 42.308 8.68 0.00 33.91 2.66
4431 5058 5.128991 GGGCACATTAGTTCCTAGACTAGTT 59.871 44.000 8.68 0.00 33.91 2.24
4432 5059 4.650131 GGGCACATTAGTTCCTAGACTAGT 59.350 45.833 8.68 0.00 33.91 2.57
4433 5060 4.261656 CGGGCACATTAGTTCCTAGACTAG 60.262 50.000 2.18 2.18 33.91 2.57
4434 5061 3.635373 CGGGCACATTAGTTCCTAGACTA 59.365 47.826 0.00 0.00 31.12 2.59
4435 5062 2.431057 CGGGCACATTAGTTCCTAGACT 59.569 50.000 0.00 0.00 31.12 3.24
4436 5063 2.483188 CCGGGCACATTAGTTCCTAGAC 60.483 54.545 0.00 0.00 31.12 2.59
4437 5064 1.760613 CCGGGCACATTAGTTCCTAGA 59.239 52.381 0.00 0.00 31.12 2.43
4438 5065 1.760613 TCCGGGCACATTAGTTCCTAG 59.239 52.381 0.00 0.00 31.12 3.02
4439 5066 1.868713 TCCGGGCACATTAGTTCCTA 58.131 50.000 0.00 0.00 31.12 2.94
4440 5067 1.141053 GATCCGGGCACATTAGTTCCT 59.859 52.381 0.00 0.00 31.12 3.36
4441 5068 1.134220 TGATCCGGGCACATTAGTTCC 60.134 52.381 0.00 0.00 0.00 3.62
4442 5069 2.213499 CTGATCCGGGCACATTAGTTC 58.787 52.381 0.00 0.00 0.00 3.01
4443 5070 1.134098 CCTGATCCGGGCACATTAGTT 60.134 52.381 0.00 0.00 0.00 2.24
4444 5071 0.469917 CCTGATCCGGGCACATTAGT 59.530 55.000 0.00 0.00 0.00 2.24
4445 5072 0.758734 TCCTGATCCGGGCACATTAG 59.241 55.000 0.00 0.00 0.00 1.73
4446 5073 0.468226 GTCCTGATCCGGGCACATTA 59.532 55.000 0.00 0.00 0.00 1.90
4447 5074 1.224592 GTCCTGATCCGGGCACATT 59.775 57.895 0.00 0.00 0.00 2.71
4448 5075 1.690219 GAGTCCTGATCCGGGCACAT 61.690 60.000 10.64 0.00 0.00 3.21
4449 5076 2.284625 AGTCCTGATCCGGGCACA 60.285 61.111 10.64 0.00 0.00 4.57
4450 5077 2.501610 GAGTCCTGATCCGGGCAC 59.498 66.667 10.64 0.00 0.00 5.01
4451 5078 2.764128 GGAGTCCTGATCCGGGCA 60.764 66.667 10.64 0.00 0.00 5.36
4452 5079 2.444895 AGGAGTCCTGATCCGGGC 60.445 66.667 12.07 0.00 42.02 6.13
4463 5090 2.267324 GCAGGCTGGACAGGAGTC 59.733 66.667 17.64 0.00 44.21 3.36
4464 5091 3.699894 CGCAGGCTGGACAGGAGT 61.700 66.667 17.64 0.00 0.00 3.85
4476 5103 3.515286 CATCAGGCAAGGCGCAGG 61.515 66.667 10.83 0.00 45.17 4.85
4477 5104 4.189188 GCATCAGGCAAGGCGCAG 62.189 66.667 10.83 0.00 45.17 5.18
4517 5144 4.728102 TTACAGACGTGGGCCGCG 62.728 66.667 35.66 35.66 43.38 6.46
4518 5145 2.813908 CTTACAGACGTGGGCCGC 60.814 66.667 7.12 7.12 41.42 6.53
4519 5146 1.445582 GTCTTACAGACGTGGGCCG 60.446 63.158 0.00 0.00 35.28 6.13
4520 5147 4.592426 GTCTTACAGACGTGGGCC 57.408 61.111 0.00 0.00 35.28 5.80
4527 5154 0.669625 GTGGGGCACGTCTTACAGAC 60.670 60.000 0.00 0.00 41.71 3.51
4528 5155 1.116536 TGTGGGGCACGTCTTACAGA 61.117 55.000 0.00 0.00 37.14 3.41
4529 5156 0.036388 ATGTGGGGCACGTCTTACAG 60.036 55.000 0.00 0.00 37.14 2.74
4530 5157 0.321210 CATGTGGGGCACGTCTTACA 60.321 55.000 0.00 0.00 37.14 2.41
4531 5158 0.036765 TCATGTGGGGCACGTCTTAC 60.037 55.000 0.00 0.00 37.14 2.34
4532 5159 0.036765 GTCATGTGGGGCACGTCTTA 60.037 55.000 0.00 0.00 37.14 2.10
4533 5160 1.302511 GTCATGTGGGGCACGTCTT 60.303 57.895 0.00 0.00 37.14 3.01
4534 5161 1.841302 ATGTCATGTGGGGCACGTCT 61.841 55.000 0.00 0.00 37.14 4.18
4535 5162 1.369091 GATGTCATGTGGGGCACGTC 61.369 60.000 0.00 0.00 37.14 4.34
4536 5163 1.377202 GATGTCATGTGGGGCACGT 60.377 57.895 0.00 0.00 37.14 4.49
4537 5164 1.078214 AGATGTCATGTGGGGCACG 60.078 57.895 0.00 0.00 37.14 5.34
4538 5165 0.254178 AGAGATGTCATGTGGGGCAC 59.746 55.000 0.00 0.00 34.56 5.01
4539 5166 0.543277 GAGAGATGTCATGTGGGGCA 59.457 55.000 0.00 0.00 0.00 5.36
4540 5167 0.179034 GGAGAGATGTCATGTGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
4541 5168 0.471617 GGGAGAGATGTCATGTGGGG 59.528 60.000 0.00 0.00 0.00 4.96
4542 5169 0.471617 GGGGAGAGATGTCATGTGGG 59.528 60.000 0.00 0.00 0.00 4.61
4543 5170 0.471617 GGGGGAGAGATGTCATGTGG 59.528 60.000 0.00 0.00 0.00 4.17
4561 5188 4.200283 GAGCTGCTCGTCGAGGGG 62.200 72.222 23.09 2.31 0.00 4.79
4577 5204 0.388649 GCTTTTCAGCTCGAGGACGA 60.389 55.000 15.58 0.00 43.51 4.20
4578 5205 1.678269 CGCTTTTCAGCTCGAGGACG 61.678 60.000 15.58 0.15 44.85 4.79
4579 5206 1.355066 CCGCTTTTCAGCTCGAGGAC 61.355 60.000 15.58 0.00 44.85 3.85
4580 5207 1.079819 CCGCTTTTCAGCTCGAGGA 60.080 57.895 15.58 0.22 44.85 3.71
4581 5208 2.103042 CCCGCTTTTCAGCTCGAGG 61.103 63.158 15.58 0.00 44.85 4.63
4582 5209 2.103042 CCCCGCTTTTCAGCTCGAG 61.103 63.158 8.45 8.45 44.85 4.04
4583 5210 1.537814 TACCCCGCTTTTCAGCTCGA 61.538 55.000 0.00 0.00 44.85 4.04
4584 5211 1.079405 TACCCCGCTTTTCAGCTCG 60.079 57.895 0.00 0.00 44.85 5.03
4585 5212 1.369839 GCTACCCCGCTTTTCAGCTC 61.370 60.000 0.00 0.00 44.85 4.09
4586 5213 1.377333 GCTACCCCGCTTTTCAGCT 60.377 57.895 0.00 0.00 44.85 4.24
4587 5214 2.750888 CGCTACCCCGCTTTTCAGC 61.751 63.158 0.00 0.00 43.41 4.26
4588 5215 3.486263 CGCTACCCCGCTTTTCAG 58.514 61.111 0.00 0.00 0.00 3.02
4597 5224 3.346631 TTTCGTCGAGCGCTACCCC 62.347 63.158 11.50 0.00 41.07 4.95
4598 5225 2.157073 GTTTCGTCGAGCGCTACCC 61.157 63.158 11.50 0.00 41.07 3.69
4599 5226 1.154073 AGTTTCGTCGAGCGCTACC 60.154 57.895 11.50 0.00 41.07 3.18
4600 5227 0.728466 ACAGTTTCGTCGAGCGCTAC 60.728 55.000 11.50 4.73 41.07 3.58
4601 5228 0.453950 GACAGTTTCGTCGAGCGCTA 60.454 55.000 11.50 0.00 41.07 4.26
4602 5229 1.729838 GACAGTTTCGTCGAGCGCT 60.730 57.895 11.27 11.27 41.07 5.92
4603 5230 1.545614 TTGACAGTTTCGTCGAGCGC 61.546 55.000 0.00 0.00 38.84 5.92
4604 5231 0.431233 CTTGACAGTTTCGTCGAGCG 59.569 55.000 0.00 0.00 39.85 5.03
4605 5232 1.767289 TCTTGACAGTTTCGTCGAGC 58.233 50.000 0.00 0.00 44.15 5.03
4606 5233 2.917971 GGATCTTGACAGTTTCGTCGAG 59.082 50.000 0.00 2.46 45.35 4.04
4607 5234 2.557056 AGGATCTTGACAGTTTCGTCGA 59.443 45.455 0.00 0.00 38.84 4.20
4608 5235 2.917971 GAGGATCTTGACAGTTTCGTCG 59.082 50.000 0.00 0.00 38.84 5.12
4609 5236 3.254892 GGAGGATCTTGACAGTTTCGTC 58.745 50.000 0.00 0.00 33.76 4.20
4610 5237 2.028020 GGGAGGATCTTGACAGTTTCGT 60.028 50.000 0.00 0.00 33.73 3.85
4611 5238 2.028112 TGGGAGGATCTTGACAGTTTCG 60.028 50.000 0.00 0.00 33.73 3.46
4612 5239 3.703001 TGGGAGGATCTTGACAGTTTC 57.297 47.619 0.00 0.00 33.73 2.78
4613 5240 3.331889 ACATGGGAGGATCTTGACAGTTT 59.668 43.478 0.00 0.00 33.73 2.66
4614 5241 2.915604 ACATGGGAGGATCTTGACAGTT 59.084 45.455 0.00 0.00 33.73 3.16
4615 5242 2.555664 ACATGGGAGGATCTTGACAGT 58.444 47.619 0.00 0.00 33.73 3.55
4616 5243 3.494048 GCTACATGGGAGGATCTTGACAG 60.494 52.174 0.00 0.00 33.73 3.51
4617 5244 2.435805 GCTACATGGGAGGATCTTGACA 59.564 50.000 0.00 0.00 33.73 3.58
4618 5245 2.703007 AGCTACATGGGAGGATCTTGAC 59.297 50.000 0.00 0.00 33.73 3.18
4619 5246 2.702478 CAGCTACATGGGAGGATCTTGA 59.298 50.000 0.00 0.00 33.73 3.02
4620 5247 3.123157 CAGCTACATGGGAGGATCTTG 57.877 52.381 0.00 0.00 33.73 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.