Multiple sequence alignment - TraesCS7A01G217900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G217900 chr7A 100.000 3255 0 0 1 3255 184568032 184571286 0.000000e+00 6011.0
1 TraesCS7A01G217900 chr7A 95.238 819 36 3 2438 3255 251319467 251318651 0.000000e+00 1293.0
2 TraesCS7A01G217900 chr7A 93.262 282 19 0 1 282 184365392 184365673 1.810000e-112 416.0
3 TraesCS7A01G217900 chr7A 75.494 506 111 8 1828 2326 191172210 191172709 5.430000e-58 235.0
4 TraesCS7A01G217900 chr7B 95.622 1462 59 3 978 2436 146045882 146047341 0.000000e+00 2340.0
5 TraesCS7A01G217900 chr7B 84.137 498 61 10 328 821 146044710 146045193 1.770000e-127 466.0
6 TraesCS7A01G217900 chr7D 95.336 922 39 3 943 1861 180205647 180206567 0.000000e+00 1461.0
7 TraesCS7A01G217900 chr7D 96.460 226 5 2 2214 2436 180206570 180206795 1.430000e-98 370.0
8 TraesCS7A01G217900 chr7D 85.269 353 46 6 289 638 180204877 180205226 3.090000e-95 359.0
9 TraesCS7A01G217900 chr1A 95.030 825 35 5 2433 3254 221877661 221876840 0.000000e+00 1291.0
10 TraesCS7A01G217900 chr1A 95.122 820 34 5 2438 3255 391651975 391651160 0.000000e+00 1288.0
11 TraesCS7A01G217900 chr1A 94.988 818 38 3 2439 3255 221869736 221868921 0.000000e+00 1280.0
12 TraesCS7A01G217900 chr1A 83.886 211 29 5 55 263 5618733 5618526 2.560000e-46 196.0
13 TraesCS7A01G217900 chr6A 94.884 821 38 4 2436 3255 258604969 258604152 0.000000e+00 1280.0
14 TraesCS7A01G217900 chr6A 94.878 820 38 4 2438 3255 303179325 303178508 0.000000e+00 1279.0
15 TraesCS7A01G217900 chr3A 94.884 821 38 3 2435 3255 311504663 311503847 0.000000e+00 1280.0
16 TraesCS7A01G217900 chr3A 94.878 820 39 3 2438 3255 374888515 374889333 0.000000e+00 1279.0
17 TraesCS7A01G217900 chr4A 94.884 821 36 5 2436 3255 46390193 46391008 0.000000e+00 1279.0
18 TraesCS7A01G217900 chr4A 87.018 285 36 1 4 288 673493900 673493617 1.460000e-83 320.0
19 TraesCS7A01G217900 chr4A 86.268 284 38 1 5 288 673671218 673670936 1.130000e-79 307.0
20 TraesCS7A01G217900 chr4A 85.821 268 35 2 1 266 487622963 487622697 6.880000e-72 281.0
21 TraesCS7A01G217900 chr4A 73.112 662 144 26 1788 2432 632616177 632616821 4.260000e-49 206.0
22 TraesCS7A01G217900 chr5D 92.361 288 22 0 1 288 15076692 15076979 8.410000e-111 411.0
23 TraesCS7A01G217900 chr5D 91.319 288 25 0 1 288 15038808 15039095 8.460000e-106 394.0
24 TraesCS7A01G217900 chr5D 72.367 1339 265 57 1141 2436 552741852 552740576 3.130000e-85 326.0
25 TraesCS7A01G217900 chr5B 75.358 629 97 30 1331 1951 697819201 697819779 1.940000e-62 250.0
26 TraesCS7A01G217900 chr5B 73.342 814 154 29 1331 2129 697808063 697808828 3.240000e-60 243.0
27 TraesCS7A01G217900 chr5B 86.391 169 23 0 1325 1493 699282522 699282354 5.550000e-43 185.0
28 TraesCS7A01G217900 chr5B 86.765 68 9 0 1385 1452 55611802 55611735 3.480000e-10 76.8
29 TraesCS7A01G217900 chr6B 83.408 223 32 5 43 263 662900590 662900809 5.510000e-48 202.0
30 TraesCS7A01G217900 chr4B 81.277 235 34 9 33 262 608262143 608262372 7.170000e-42 182.0
31 TraesCS7A01G217900 chr6D 78.261 138 19 7 1109 1243 459064572 459064443 9.680000e-11 78.7
32 TraesCS7A01G217900 chr1B 94.444 36 1 1 1195 1229 53082842 53082807 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G217900 chr7A 184568032 184571286 3254 False 6011 6011 100.0000 1 3255 1 chr7A.!!$F2 3254
1 TraesCS7A01G217900 chr7A 251318651 251319467 816 True 1293 1293 95.2380 2438 3255 1 chr7A.!!$R1 817
2 TraesCS7A01G217900 chr7B 146044710 146047341 2631 False 1403 2340 89.8795 328 2436 2 chr7B.!!$F1 2108
3 TraesCS7A01G217900 chr7D 180204877 180206795 1918 False 730 1461 92.3550 289 2436 3 chr7D.!!$F1 2147
4 TraesCS7A01G217900 chr1A 221876840 221877661 821 True 1291 1291 95.0300 2433 3254 1 chr1A.!!$R3 821
5 TraesCS7A01G217900 chr1A 391651160 391651975 815 True 1288 1288 95.1220 2438 3255 1 chr1A.!!$R4 817
6 TraesCS7A01G217900 chr1A 221868921 221869736 815 True 1280 1280 94.9880 2439 3255 1 chr1A.!!$R2 816
7 TraesCS7A01G217900 chr6A 258604152 258604969 817 True 1280 1280 94.8840 2436 3255 1 chr6A.!!$R1 819
8 TraesCS7A01G217900 chr6A 303178508 303179325 817 True 1279 1279 94.8780 2438 3255 1 chr6A.!!$R2 817
9 TraesCS7A01G217900 chr3A 311503847 311504663 816 True 1280 1280 94.8840 2435 3255 1 chr3A.!!$R1 820
10 TraesCS7A01G217900 chr3A 374888515 374889333 818 False 1279 1279 94.8780 2438 3255 1 chr3A.!!$F1 817
11 TraesCS7A01G217900 chr4A 46390193 46391008 815 False 1279 1279 94.8840 2436 3255 1 chr4A.!!$F1 819
12 TraesCS7A01G217900 chr4A 632616177 632616821 644 False 206 206 73.1120 1788 2432 1 chr4A.!!$F2 644
13 TraesCS7A01G217900 chr5D 552740576 552741852 1276 True 326 326 72.3670 1141 2436 1 chr5D.!!$R1 1295
14 TraesCS7A01G217900 chr5B 697819201 697819779 578 False 250 250 75.3580 1331 1951 1 chr5B.!!$F2 620
15 TraesCS7A01G217900 chr5B 697808063 697808828 765 False 243 243 73.3420 1331 2129 1 chr5B.!!$F1 798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
902 1086 0.032952 TCGTTCGACAAAGGAGGTGG 59.967 55.0 0.0 0.0 0.0 4.61 F
903 1087 0.032952 CGTTCGACAAAGGAGGTGGA 59.967 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2011 2646 0.250684 TCCATCTGCAACGAAAGCCA 60.251 50.000 0.0 0.0 0.00 4.75 R
2849 3509 1.078848 AGGGTGCGAGATTGCTGAC 60.079 57.895 0.0 0.0 35.36 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.351054 CCTCCCAGCCACCCACAC 62.351 72.222 0.00 0.00 0.00 3.82
18 19 4.351054 CTCCCAGCCACCCACACC 62.351 72.222 0.00 0.00 0.00 4.16
19 20 4.918360 TCCCAGCCACCCACACCT 62.918 66.667 0.00 0.00 0.00 4.00
20 21 4.351054 CCCAGCCACCCACACCTC 62.351 72.222 0.00 0.00 0.00 3.85
21 22 3.252284 CCAGCCACCCACACCTCT 61.252 66.667 0.00 0.00 0.00 3.69
22 23 2.033141 CAGCCACCCACACCTCTG 59.967 66.667 0.00 0.00 0.00 3.35
23 24 2.448542 AGCCACCCACACCTCTGT 60.449 61.111 0.00 0.00 0.00 3.41
24 25 2.078665 AGCCACCCACACCTCTGTT 61.079 57.895 0.00 0.00 0.00 3.16
25 26 1.152756 GCCACCCACACCTCTGTTT 60.153 57.895 0.00 0.00 0.00 2.83
26 27 1.455383 GCCACCCACACCTCTGTTTG 61.455 60.000 0.00 0.00 0.00 2.93
27 28 0.823356 CCACCCACACCTCTGTTTGG 60.823 60.000 0.00 0.00 41.21 3.28
28 29 0.182537 CACCCACACCTCTGTTTGGA 59.817 55.000 0.00 0.00 43.72 3.53
29 30 1.149101 ACCCACACCTCTGTTTGGAT 58.851 50.000 0.00 0.00 43.72 3.41
30 31 2.039746 CACCCACACCTCTGTTTGGATA 59.960 50.000 0.00 0.00 43.72 2.59
31 32 2.714250 ACCCACACCTCTGTTTGGATAA 59.286 45.455 0.00 0.00 43.72 1.75
32 33 3.244911 ACCCACACCTCTGTTTGGATAAG 60.245 47.826 0.00 0.00 43.72 1.73
33 34 2.749621 CCACACCTCTGTTTGGATAAGC 59.250 50.000 0.00 0.00 43.72 3.09
34 35 2.416547 CACACCTCTGTTTGGATAAGCG 59.583 50.000 0.00 0.00 0.00 4.68
35 36 2.301870 ACACCTCTGTTTGGATAAGCGA 59.698 45.455 0.00 0.00 0.00 4.93
36 37 2.932614 CACCTCTGTTTGGATAAGCGAG 59.067 50.000 0.00 0.00 0.00 5.03
37 38 2.567615 ACCTCTGTTTGGATAAGCGAGT 59.432 45.455 0.00 0.00 0.00 4.18
38 39 3.008049 ACCTCTGTTTGGATAAGCGAGTT 59.992 43.478 0.00 0.00 0.00 3.01
39 40 4.222145 ACCTCTGTTTGGATAAGCGAGTTA 59.778 41.667 0.00 0.00 0.00 2.24
40 41 4.567159 CCTCTGTTTGGATAAGCGAGTTAC 59.433 45.833 0.00 0.00 0.00 2.50
41 42 5.142061 TCTGTTTGGATAAGCGAGTTACA 57.858 39.130 0.00 0.00 0.00 2.41
42 43 5.543714 TCTGTTTGGATAAGCGAGTTACAA 58.456 37.500 0.00 0.00 0.00 2.41
43 44 5.637810 TCTGTTTGGATAAGCGAGTTACAAG 59.362 40.000 0.00 0.00 0.00 3.16
44 45 4.153475 TGTTTGGATAAGCGAGTTACAAGC 59.847 41.667 0.00 0.00 0.00 4.01
45 46 2.901249 TGGATAAGCGAGTTACAAGCC 58.099 47.619 0.00 0.00 0.00 4.35
46 47 2.235155 TGGATAAGCGAGTTACAAGCCA 59.765 45.455 0.00 0.00 0.00 4.75
47 48 2.608090 GGATAAGCGAGTTACAAGCCAC 59.392 50.000 0.00 0.00 0.00 5.01
48 49 2.823924 TAAGCGAGTTACAAGCCACA 57.176 45.000 0.00 0.00 0.00 4.17
49 50 1.961793 AAGCGAGTTACAAGCCACAA 58.038 45.000 0.00 0.00 0.00 3.33
50 51 1.226746 AGCGAGTTACAAGCCACAAC 58.773 50.000 0.00 0.00 0.00 3.32
51 52 1.202651 AGCGAGTTACAAGCCACAACT 60.203 47.619 0.00 0.00 35.27 3.16
52 53 1.069906 GCGAGTTACAAGCCACAACTG 60.070 52.381 0.00 0.00 32.79 3.16
53 54 1.531149 CGAGTTACAAGCCACAACTGG 59.469 52.381 0.00 0.00 41.13 4.00
54 55 2.805295 CGAGTTACAAGCCACAACTGGA 60.805 50.000 0.00 0.00 40.55 3.86
55 56 2.808543 GAGTTACAAGCCACAACTGGAG 59.191 50.000 0.00 0.00 40.55 3.86
56 57 1.266989 GTTACAAGCCACAACTGGAGC 59.733 52.381 0.00 0.00 40.55 4.70
57 58 0.250727 TACAAGCCACAACTGGAGCC 60.251 55.000 0.00 0.00 40.55 4.70
58 59 2.281761 AAGCCACAACTGGAGCCG 60.282 61.111 0.00 0.00 40.55 5.52
59 60 3.120086 AAGCCACAACTGGAGCCGT 62.120 57.895 0.00 0.00 40.55 5.68
60 61 3.050275 GCCACAACTGGAGCCGTC 61.050 66.667 0.00 0.00 40.55 4.79
61 62 2.358737 CCACAACTGGAGCCGTCC 60.359 66.667 0.00 0.00 40.55 4.79
69 70 2.674754 GGAGCCGTCCAAATCCCA 59.325 61.111 0.00 0.00 43.31 4.37
70 71 1.452108 GGAGCCGTCCAAATCCCAG 60.452 63.158 0.00 0.00 43.31 4.45
71 72 2.044946 AGCCGTCCAAATCCCAGC 60.045 61.111 0.00 0.00 0.00 4.85
72 73 3.140814 GCCGTCCAAATCCCAGCC 61.141 66.667 0.00 0.00 0.00 4.85
73 74 2.824041 CCGTCCAAATCCCAGCCG 60.824 66.667 0.00 0.00 0.00 5.52
74 75 2.267642 CGTCCAAATCCCAGCCGA 59.732 61.111 0.00 0.00 0.00 5.54
75 76 1.376683 CGTCCAAATCCCAGCCGAA 60.377 57.895 0.00 0.00 0.00 4.30
76 77 1.369091 CGTCCAAATCCCAGCCGAAG 61.369 60.000 0.00 0.00 0.00 3.79
77 78 0.035439 GTCCAAATCCCAGCCGAAGA 60.035 55.000 0.00 0.00 0.00 2.87
78 79 0.035439 TCCAAATCCCAGCCGAAGAC 60.035 55.000 0.00 0.00 0.00 3.01
79 80 0.322456 CCAAATCCCAGCCGAAGACA 60.322 55.000 0.00 0.00 0.00 3.41
80 81 1.533625 CAAATCCCAGCCGAAGACAA 58.466 50.000 0.00 0.00 0.00 3.18
81 82 1.885887 CAAATCCCAGCCGAAGACAAA 59.114 47.619 0.00 0.00 0.00 2.83
82 83 1.534729 AATCCCAGCCGAAGACAAAC 58.465 50.000 0.00 0.00 0.00 2.93
83 84 0.673644 ATCCCAGCCGAAGACAAACG 60.674 55.000 0.00 0.00 0.00 3.60
84 85 1.597027 CCCAGCCGAAGACAAACGT 60.597 57.895 0.00 0.00 0.00 3.99
85 86 0.320073 CCCAGCCGAAGACAAACGTA 60.320 55.000 0.00 0.00 0.00 3.57
86 87 1.504359 CCAGCCGAAGACAAACGTAA 58.496 50.000 0.00 0.00 0.00 3.18
87 88 1.193874 CCAGCCGAAGACAAACGTAAC 59.806 52.381 0.00 0.00 0.00 2.50
88 89 1.862201 CAGCCGAAGACAAACGTAACA 59.138 47.619 0.00 0.00 0.00 2.41
89 90 2.285756 CAGCCGAAGACAAACGTAACAA 59.714 45.455 0.00 0.00 0.00 2.83
90 91 2.286025 AGCCGAAGACAAACGTAACAAC 59.714 45.455 0.00 0.00 0.00 3.32
91 92 2.286025 GCCGAAGACAAACGTAACAACT 59.714 45.455 0.00 0.00 0.00 3.16
92 93 3.603173 GCCGAAGACAAACGTAACAACTC 60.603 47.826 0.00 0.00 0.00 3.01
93 94 3.060070 CCGAAGACAAACGTAACAACTCC 60.060 47.826 0.00 0.00 0.00 3.85
94 95 3.800506 CGAAGACAAACGTAACAACTCCT 59.199 43.478 0.00 0.00 0.00 3.69
95 96 4.317839 CGAAGACAAACGTAACAACTCCTG 60.318 45.833 0.00 0.00 0.00 3.86
96 97 4.133013 AGACAAACGTAACAACTCCTGT 57.867 40.909 0.00 0.00 41.27 4.00
97 98 5.266733 AGACAAACGTAACAACTCCTGTA 57.733 39.130 0.00 0.00 37.23 2.74
98 99 5.287226 AGACAAACGTAACAACTCCTGTAG 58.713 41.667 0.00 0.00 37.23 2.74
99 100 3.805971 ACAAACGTAACAACTCCTGTAGC 59.194 43.478 0.00 0.00 37.23 3.58
100 101 4.056050 CAAACGTAACAACTCCTGTAGCT 58.944 43.478 0.00 0.00 37.23 3.32
101 102 5.221303 ACAAACGTAACAACTCCTGTAGCTA 60.221 40.000 0.00 0.00 37.23 3.32
102 103 5.656213 AACGTAACAACTCCTGTAGCTAT 57.344 39.130 0.00 0.00 37.23 2.97
103 104 6.764308 AACGTAACAACTCCTGTAGCTATA 57.236 37.500 0.00 0.00 37.23 1.31
104 105 6.956202 ACGTAACAACTCCTGTAGCTATAT 57.044 37.500 0.00 0.00 37.23 0.86
105 106 8.455903 AACGTAACAACTCCTGTAGCTATATA 57.544 34.615 0.00 0.00 37.23 0.86
106 107 8.455903 ACGTAACAACTCCTGTAGCTATATAA 57.544 34.615 0.00 0.00 37.23 0.98
107 108 9.075678 ACGTAACAACTCCTGTAGCTATATAAT 57.924 33.333 0.00 0.00 37.23 1.28
108 109 9.343103 CGTAACAACTCCTGTAGCTATATAATG 57.657 37.037 0.00 0.00 37.23 1.90
109 110 9.640963 GTAACAACTCCTGTAGCTATATAATGG 57.359 37.037 0.00 0.00 37.23 3.16
110 111 7.857404 ACAACTCCTGTAGCTATATAATGGT 57.143 36.000 0.00 0.00 36.10 3.55
111 112 8.951614 ACAACTCCTGTAGCTATATAATGGTA 57.048 34.615 0.00 0.00 36.10 3.25
112 113 8.804204 ACAACTCCTGTAGCTATATAATGGTAC 58.196 37.037 0.00 9.40 36.10 3.34
135 136 3.058160 CTCAGCGGGCCCAGTTTG 61.058 66.667 24.92 13.81 0.00 2.93
136 137 4.659172 TCAGCGGGCCCAGTTTGG 62.659 66.667 24.92 4.93 37.25 3.28
154 155 2.439156 GCTAGCAAGCCACTGGGG 60.439 66.667 10.63 0.00 43.40 4.96
155 156 2.971598 GCTAGCAAGCCACTGGGGA 61.972 63.158 10.63 0.00 43.40 4.81
156 157 1.685224 CTAGCAAGCCACTGGGGAA 59.315 57.895 0.00 0.00 40.01 3.97
157 158 0.393537 CTAGCAAGCCACTGGGGAAG 60.394 60.000 0.00 0.00 40.01 3.46
158 159 2.484287 TAGCAAGCCACTGGGGAAGC 62.484 60.000 0.00 0.00 40.01 3.86
159 160 2.437897 CAAGCCACTGGGGAAGCT 59.562 61.111 0.00 0.00 40.01 3.74
160 161 1.228675 CAAGCCACTGGGGAAGCTT 60.229 57.895 0.00 0.00 46.10 3.74
161 162 0.829182 CAAGCCACTGGGGAAGCTTT 60.829 55.000 0.00 0.00 42.74 3.51
162 163 0.105504 AAGCCACTGGGGAAGCTTTT 60.106 50.000 0.00 0.00 42.74 2.27
163 164 0.105504 AGCCACTGGGGAAGCTTTTT 60.106 50.000 0.00 0.00 40.01 1.94
164 165 0.033920 GCCACTGGGGAAGCTTTTTG 59.966 55.000 0.00 0.00 40.01 2.44
165 166 0.681175 CCACTGGGGAAGCTTTTTGG 59.319 55.000 0.00 0.00 40.01 3.28
166 167 0.681175 CACTGGGGAAGCTTTTTGGG 59.319 55.000 0.00 0.00 0.00 4.12
167 168 1.121407 ACTGGGGAAGCTTTTTGGGC 61.121 55.000 0.00 0.00 0.00 5.36
168 169 1.830587 CTGGGGAAGCTTTTTGGGCC 61.831 60.000 0.00 0.00 0.00 5.80
169 170 2.656646 GGGAAGCTTTTTGGGCCG 59.343 61.111 0.00 0.00 0.00 6.13
170 171 2.656646 GGAAGCTTTTTGGGCCGG 59.343 61.111 0.00 0.00 0.00 6.13
171 172 2.207229 GGAAGCTTTTTGGGCCGGT 61.207 57.895 1.90 0.00 0.00 5.28
172 173 1.745890 GAAGCTTTTTGGGCCGGTT 59.254 52.632 1.90 0.00 0.00 4.44
173 174 0.599991 GAAGCTTTTTGGGCCGGTTG 60.600 55.000 1.90 0.00 0.00 3.77
174 175 2.030412 GCTTTTTGGGCCGGTTGG 59.970 61.111 1.90 0.00 38.77 3.77
175 176 2.503382 GCTTTTTGGGCCGGTTGGA 61.503 57.895 1.90 0.00 37.49 3.53
176 177 1.365999 CTTTTTGGGCCGGTTGGAC 59.634 57.895 1.90 0.00 45.75 4.02
177 178 1.075896 TTTTTGGGCCGGTTGGACT 60.076 52.632 1.90 0.00 45.75 3.85
178 179 0.688087 TTTTTGGGCCGGTTGGACTT 60.688 50.000 1.90 0.00 45.75 3.01
179 180 1.395826 TTTTGGGCCGGTTGGACTTG 61.396 55.000 1.90 0.00 45.75 3.16
180 181 3.801068 TTGGGCCGGTTGGACTTGG 62.801 63.158 1.90 0.00 45.75 3.61
184 185 3.966543 CCGGTTGGACTTGGGCCT 61.967 66.667 4.53 0.00 37.49 5.19
185 186 2.359975 CGGTTGGACTTGGGCCTC 60.360 66.667 4.53 0.00 0.00 4.70
186 187 2.359975 GGTTGGACTTGGGCCTCG 60.360 66.667 4.53 0.00 0.00 4.63
187 188 2.359975 GTTGGACTTGGGCCTCGG 60.360 66.667 4.53 0.00 0.00 4.63
188 189 2.852075 TTGGACTTGGGCCTCGGT 60.852 61.111 4.53 0.03 0.00 4.69
189 190 2.457323 TTGGACTTGGGCCTCGGTT 61.457 57.895 4.53 0.00 0.00 4.44
190 191 2.046217 GGACTTGGGCCTCGGTTC 60.046 66.667 4.53 0.00 0.00 3.62
191 192 2.593956 GGACTTGGGCCTCGGTTCT 61.594 63.158 4.53 0.00 0.00 3.01
192 193 1.375326 GACTTGGGCCTCGGTTCTT 59.625 57.895 4.53 0.00 0.00 2.52
193 194 0.250770 GACTTGGGCCTCGGTTCTTT 60.251 55.000 4.53 0.00 0.00 2.52
194 195 0.250770 ACTTGGGCCTCGGTTCTTTC 60.251 55.000 4.53 0.00 0.00 2.62
195 196 0.036875 CTTGGGCCTCGGTTCTTTCT 59.963 55.000 4.53 0.00 0.00 2.52
196 197 0.250727 TTGGGCCTCGGTTCTTTCTG 60.251 55.000 4.53 0.00 0.00 3.02
197 198 1.125093 TGGGCCTCGGTTCTTTCTGA 61.125 55.000 4.53 0.00 0.00 3.27
198 199 0.391793 GGGCCTCGGTTCTTTCTGAG 60.392 60.000 0.84 0.00 39.68 3.35
199 200 0.321996 GGCCTCGGTTCTTTCTGAGT 59.678 55.000 0.00 0.00 38.69 3.41
200 201 1.270893 GGCCTCGGTTCTTTCTGAGTT 60.271 52.381 0.00 0.00 38.69 3.01
201 202 1.801178 GCCTCGGTTCTTTCTGAGTTG 59.199 52.381 0.00 0.00 38.69 3.16
202 203 2.417719 CCTCGGTTCTTTCTGAGTTGG 58.582 52.381 0.00 0.00 38.69 3.77
203 204 1.801178 CTCGGTTCTTTCTGAGTTGGC 59.199 52.381 0.00 0.00 36.43 4.52
204 205 1.140052 TCGGTTCTTTCTGAGTTGGCA 59.860 47.619 0.00 0.00 0.00 4.92
205 206 1.264288 CGGTTCTTTCTGAGTTGGCAC 59.736 52.381 0.00 0.00 0.00 5.01
206 207 2.576615 GGTTCTTTCTGAGTTGGCACT 58.423 47.619 0.00 0.00 35.17 4.40
213 214 2.659610 GAGTTGGCACTCCGCTCT 59.340 61.111 5.98 0.00 43.50 4.09
214 215 1.004440 GAGTTGGCACTCCGCTCTT 60.004 57.895 5.98 0.00 43.50 2.85
215 216 1.294659 GAGTTGGCACTCCGCTCTTG 61.295 60.000 5.98 0.00 43.50 3.02
216 217 1.598130 GTTGGCACTCCGCTCTTGT 60.598 57.895 0.00 0.00 41.91 3.16
217 218 1.301716 TTGGCACTCCGCTCTTGTC 60.302 57.895 0.00 0.00 41.91 3.18
218 219 2.811317 GGCACTCCGCTCTTGTCG 60.811 66.667 0.00 0.00 41.91 4.35
220 221 2.811317 CACTCCGCTCTTGTCGGC 60.811 66.667 0.00 0.00 46.05 5.54
221 222 3.303135 ACTCCGCTCTTGTCGGCA 61.303 61.111 0.00 0.00 46.05 5.69
222 223 2.811317 CTCCGCTCTTGTCGGCAC 60.811 66.667 0.00 0.00 46.05 5.01
235 236 3.490890 GGCACGGTCTTGATCAGC 58.509 61.111 0.00 0.00 0.00 4.26
236 237 1.078848 GGCACGGTCTTGATCAGCT 60.079 57.895 0.00 0.00 0.00 4.24
237 238 0.175760 GGCACGGTCTTGATCAGCTA 59.824 55.000 0.00 0.00 0.00 3.32
238 239 1.281899 GCACGGTCTTGATCAGCTAC 58.718 55.000 0.00 0.00 0.00 3.58
239 240 1.404181 GCACGGTCTTGATCAGCTACA 60.404 52.381 0.00 0.00 0.00 2.74
240 241 2.534298 CACGGTCTTGATCAGCTACAG 58.466 52.381 0.00 0.00 0.00 2.74
241 242 1.478510 ACGGTCTTGATCAGCTACAGG 59.521 52.381 0.00 0.00 0.00 4.00
242 243 1.202463 CGGTCTTGATCAGCTACAGGG 60.202 57.143 0.00 0.00 0.00 4.45
243 244 1.474143 GGTCTTGATCAGCTACAGGGC 60.474 57.143 0.00 0.00 0.00 5.19
244 245 1.484240 GTCTTGATCAGCTACAGGGCT 59.516 52.381 0.00 0.00 44.10 5.19
245 246 2.093235 GTCTTGATCAGCTACAGGGCTT 60.093 50.000 0.00 0.00 41.00 4.35
246 247 2.573462 TCTTGATCAGCTACAGGGCTTT 59.427 45.455 0.00 0.00 41.00 3.51
247 248 2.698855 TGATCAGCTACAGGGCTTTC 57.301 50.000 0.00 0.00 41.00 2.62
248 249 2.191400 TGATCAGCTACAGGGCTTTCT 58.809 47.619 0.00 0.00 41.00 2.52
249 250 2.573462 TGATCAGCTACAGGGCTTTCTT 59.427 45.455 0.00 0.00 41.00 2.52
250 251 2.770164 TCAGCTACAGGGCTTTCTTC 57.230 50.000 0.00 0.00 41.00 2.87
251 252 1.977854 TCAGCTACAGGGCTTTCTTCA 59.022 47.619 0.00 0.00 41.00 3.02
252 253 2.027745 TCAGCTACAGGGCTTTCTTCAG 60.028 50.000 0.00 0.00 41.00 3.02
253 254 1.981495 AGCTACAGGGCTTTCTTCAGT 59.019 47.619 0.00 0.00 39.86 3.41
254 255 3.055819 CAGCTACAGGGCTTTCTTCAGTA 60.056 47.826 0.00 0.00 41.00 2.74
255 256 3.777522 AGCTACAGGGCTTTCTTCAGTAT 59.222 43.478 0.00 0.00 39.86 2.12
256 257 4.123506 GCTACAGGGCTTTCTTCAGTATC 58.876 47.826 0.00 0.00 0.00 2.24
257 258 4.141824 GCTACAGGGCTTTCTTCAGTATCT 60.142 45.833 0.00 0.00 0.00 1.98
258 259 4.917906 ACAGGGCTTTCTTCAGTATCTT 57.082 40.909 0.00 0.00 0.00 2.40
259 260 4.837972 ACAGGGCTTTCTTCAGTATCTTC 58.162 43.478 0.00 0.00 0.00 2.87
260 261 4.287067 ACAGGGCTTTCTTCAGTATCTTCA 59.713 41.667 0.00 0.00 0.00 3.02
261 262 4.874966 CAGGGCTTTCTTCAGTATCTTCAG 59.125 45.833 0.00 0.00 0.00 3.02
262 263 4.080638 AGGGCTTTCTTCAGTATCTTCAGG 60.081 45.833 0.00 0.00 0.00 3.86
263 264 4.195416 GGCTTTCTTCAGTATCTTCAGGG 58.805 47.826 0.00 0.00 0.00 4.45
264 265 4.080863 GGCTTTCTTCAGTATCTTCAGGGA 60.081 45.833 0.00 0.00 0.00 4.20
265 266 5.397334 GGCTTTCTTCAGTATCTTCAGGGAT 60.397 44.000 0.00 0.00 0.00 3.85
266 267 6.183361 GGCTTTCTTCAGTATCTTCAGGGATA 60.183 42.308 0.00 0.00 0.00 2.59
267 268 6.928492 GCTTTCTTCAGTATCTTCAGGGATAG 59.072 42.308 0.00 0.00 0.00 2.08
268 269 6.412362 TTCTTCAGTATCTTCAGGGATAGC 57.588 41.667 0.00 0.00 0.00 2.97
269 270 5.458595 TCTTCAGTATCTTCAGGGATAGCA 58.541 41.667 0.00 0.00 0.00 3.49
270 271 5.538053 TCTTCAGTATCTTCAGGGATAGCAG 59.462 44.000 0.00 0.00 0.00 4.24
271 272 4.155709 TCAGTATCTTCAGGGATAGCAGG 58.844 47.826 0.00 0.00 0.00 4.85
272 273 3.900601 CAGTATCTTCAGGGATAGCAGGT 59.099 47.826 0.00 0.00 0.00 4.00
273 274 5.080337 CAGTATCTTCAGGGATAGCAGGTA 58.920 45.833 0.00 0.00 0.00 3.08
274 275 5.047660 CAGTATCTTCAGGGATAGCAGGTAC 60.048 48.000 0.00 0.00 0.00 3.34
275 276 3.689872 TCTTCAGGGATAGCAGGTACT 57.310 47.619 0.00 0.00 43.88 2.73
286 287 3.289525 AGGTACTGAGCCGCTGAC 58.710 61.111 0.00 0.00 37.18 3.51
287 288 1.606601 AGGTACTGAGCCGCTGACA 60.607 57.895 0.00 0.00 37.18 3.58
296 297 3.414700 CCGCTGACACCTTCGCAC 61.415 66.667 0.00 0.00 0.00 5.34
297 298 3.767230 CGCTGACACCTTCGCACG 61.767 66.667 0.00 0.00 0.00 5.34
315 316 2.490217 CACTCCGGTCCAGCTACG 59.510 66.667 0.00 0.00 0.00 3.51
321 322 1.592400 CCGGTCCAGCTACGACTCAA 61.592 60.000 11.70 0.00 0.00 3.02
324 325 0.889306 GTCCAGCTACGACTCAACCT 59.111 55.000 5.98 0.00 0.00 3.50
325 326 0.888619 TCCAGCTACGACTCAACCTG 59.111 55.000 0.00 0.00 0.00 4.00
326 327 0.737715 CCAGCTACGACTCAACCTGC 60.738 60.000 0.00 0.00 0.00 4.85
333 334 1.004277 CGACTCAACCTGCAGACGAC 61.004 60.000 17.39 0.00 30.71 4.34
385 386 1.635281 CGCGCTGAAGAAGATGAGC 59.365 57.895 5.56 0.00 0.00 4.26
387 388 1.297664 GCGCTGAAGAAGATGAGCAT 58.702 50.000 0.00 0.00 0.00 3.79
388 389 2.477825 GCGCTGAAGAAGATGAGCATA 58.522 47.619 0.00 0.00 0.00 3.14
403 404 0.744414 GCATAGTGGCTTCGCTTGGA 60.744 55.000 0.00 0.00 32.81 3.53
420 421 3.941657 GAAGCGGGCGAGCAGAAGT 62.942 63.158 6.37 0.00 40.15 3.01
441 443 1.621317 TGAACAAGGCCGATGAGTACA 59.379 47.619 17.19 8.80 0.00 2.90
461 464 2.730524 GGAGACAGAGAGCTGGGGC 61.731 68.421 0.00 0.00 46.60 5.80
462 465 1.986757 GAGACAGAGAGCTGGGGCA 60.987 63.158 0.00 0.00 46.60 5.36
512 515 2.353956 GCGCGAGATGCAGATCGA 60.354 61.111 23.12 0.00 46.97 3.59
518 522 0.662970 GAGATGCAGATCGACGGAGC 60.663 60.000 0.00 0.00 33.34 4.70
531 535 1.253593 ACGGAGCTGCAGATGAGACA 61.254 55.000 20.43 0.00 0.00 3.41
543 547 3.371063 GAGACACCGTGGAGGCGA 61.371 66.667 3.03 0.00 46.52 5.54
581 585 0.453793 CGCTGAAGAGAGATGGTCGT 59.546 55.000 0.00 0.00 0.00 4.34
594 598 4.736896 GTCGTGGGTGAGACGGCC 62.737 72.222 0.00 0.00 35.39 6.13
595 599 4.988716 TCGTGGGTGAGACGGCCT 62.989 66.667 0.00 0.00 37.43 5.19
627 632 2.280457 GGCCGGCAGCTCATAGTC 60.280 66.667 30.85 1.84 43.05 2.59
632 637 2.279120 GCAGCTCATAGTCGCGCT 60.279 61.111 5.56 4.52 0.00 5.92
648 653 4.906792 CTAGCAGAGCGGGGCAGC 62.907 72.222 0.00 0.00 37.41 5.25
668 673 2.475466 GCGGTGATGTGCCCATGAG 61.475 63.158 0.00 0.00 0.00 2.90
674 679 1.339342 TGATGTGCCCATGAGTGACTG 60.339 52.381 0.00 0.00 0.00 3.51
681 686 0.604511 CCATGAGTGACTGCTGTGCA 60.605 55.000 0.00 0.00 36.92 4.57
720 725 3.869246 GGTGACGAGAGAAGAGAGTAGAG 59.131 52.174 0.00 0.00 0.00 2.43
723 728 4.464951 TGACGAGAGAAGAGAGTAGAGAGT 59.535 45.833 0.00 0.00 0.00 3.24
726 731 6.513180 ACGAGAGAAGAGAGTAGAGAGTATG 58.487 44.000 0.00 0.00 0.00 2.39
730 735 5.054477 AGAAGAGAGTAGAGAGTATGCGTC 58.946 45.833 0.00 0.00 0.00 5.19
750 755 1.805345 CCGGGCGTATGTGTTTAACAA 59.195 47.619 0.00 0.00 43.61 2.83
771 776 3.926616 ACGAACGATCCTTGAGTTTGAT 58.073 40.909 0.14 0.00 34.35 2.57
801 806 5.984725 TCCTCAATGGCTTTAAGATTCGTA 58.015 37.500 0.00 0.00 35.26 3.43
824 829 8.687301 CGTACAGAAAAATCAAACAACAATACC 58.313 33.333 0.00 0.00 0.00 2.73
828 833 7.224362 CAGAAAAATCAAACAACAATACCAGCA 59.776 33.333 0.00 0.00 0.00 4.41
833 838 4.826733 TCAAACAACAATACCAGCATCAGT 59.173 37.500 0.00 0.00 0.00 3.41
835 840 4.019792 ACAACAATACCAGCATCAGTGA 57.980 40.909 0.00 0.00 0.00 3.41
836 841 4.592942 ACAACAATACCAGCATCAGTGAT 58.407 39.130 0.00 0.00 0.00 3.06
838 843 6.359804 ACAACAATACCAGCATCAGTGATAT 58.640 36.000 5.03 0.00 0.00 1.63
839 844 6.830324 ACAACAATACCAGCATCAGTGATATT 59.170 34.615 5.03 0.00 0.00 1.28
840 845 6.872628 ACAATACCAGCATCAGTGATATTG 57.127 37.500 16.99 16.99 35.59 1.90
841 846 5.766670 ACAATACCAGCATCAGTGATATTGG 59.233 40.000 23.69 23.69 34.38 3.16
842 847 3.939740 ACCAGCATCAGTGATATTGGT 57.060 42.857 24.65 24.65 34.96 3.67
843 848 6.686484 ATACCAGCATCAGTGATATTGGTA 57.314 37.500 30.69 30.69 40.75 3.25
845 850 5.311265 ACCAGCATCAGTGATATTGGTATG 58.689 41.667 27.13 9.54 36.70 2.39
846 851 5.072193 ACCAGCATCAGTGATATTGGTATGA 59.928 40.000 27.13 0.00 36.70 2.15
847 852 5.642491 CCAGCATCAGTGATATTGGTATGAG 59.358 44.000 19.77 2.34 0.00 2.90
848 853 6.461640 CAGCATCAGTGATATTGGTATGAGA 58.538 40.000 5.03 0.00 0.00 3.27
849 854 6.932960 CAGCATCAGTGATATTGGTATGAGAA 59.067 38.462 5.03 0.00 0.00 2.87
850 855 7.443272 CAGCATCAGTGATATTGGTATGAGAAA 59.557 37.037 5.03 0.00 0.00 2.52
851 856 8.162085 AGCATCAGTGATATTGGTATGAGAAAT 58.838 33.333 5.03 0.00 0.00 2.17
852 857 8.449397 GCATCAGTGATATTGGTATGAGAAATC 58.551 37.037 5.03 0.00 0.00 2.17
853 858 9.498176 CATCAGTGATATTGGTATGAGAAATCA 57.502 33.333 5.03 0.00 0.00 2.57
856 861 9.112725 CAGTGATATTGGTATGAGAAATCAACA 57.887 33.333 0.00 0.00 0.00 3.33
857 862 9.334947 AGTGATATTGGTATGAGAAATCAACAG 57.665 33.333 0.00 0.00 0.00 3.16
869 1053 7.934457 TGAGAAATCAACAGAAGGAAAGAAAG 58.066 34.615 0.00 0.00 0.00 2.62
875 1059 9.591792 AATCAACAGAAGGAAAGAAAGAAAAAG 57.408 29.630 0.00 0.00 0.00 2.27
877 1061 8.244113 TCAACAGAAGGAAAGAAAGAAAAAGAC 58.756 33.333 0.00 0.00 0.00 3.01
878 1062 7.703058 ACAGAAGGAAAGAAAGAAAAAGACA 57.297 32.000 0.00 0.00 0.00 3.41
879 1063 7.539436 ACAGAAGGAAAGAAAGAAAAAGACAC 58.461 34.615 0.00 0.00 0.00 3.67
880 1064 6.688813 CAGAAGGAAAGAAAGAAAAAGACACG 59.311 38.462 0.00 0.00 0.00 4.49
882 1066 5.880341 AGGAAAGAAAGAAAAAGACACGTG 58.120 37.500 15.48 15.48 0.00 4.49
883 1067 5.414765 AGGAAAGAAAGAAAAAGACACGTGT 59.585 36.000 23.64 23.64 0.00 4.49
884 1068 5.737757 GGAAAGAAAGAAAAAGACACGTGTC 59.262 40.000 35.83 35.83 45.08 3.67
895 1079 0.918619 ACACGTGTCGTTCGACAAAG 59.081 50.000 25.60 23.03 45.20 2.77
897 1081 0.101040 ACGTGTCGTTCGACAAAGGA 59.899 50.000 25.60 4.19 45.20 3.36
898 1082 0.776451 CGTGTCGTTCGACAAAGGAG 59.224 55.000 25.60 13.12 45.20 3.69
900 1084 0.748450 TGTCGTTCGACAAAGGAGGT 59.252 50.000 22.64 0.00 41.49 3.85
901 1085 1.137513 GTCGTTCGACAAAGGAGGTG 58.862 55.000 18.42 0.00 32.67 4.00
902 1086 0.032952 TCGTTCGACAAAGGAGGTGG 59.967 55.000 0.00 0.00 0.00 4.61
903 1087 0.032952 CGTTCGACAAAGGAGGTGGA 59.967 55.000 0.00 0.00 0.00 4.02
904 1088 1.337823 CGTTCGACAAAGGAGGTGGAT 60.338 52.381 0.00 0.00 0.00 3.41
906 1090 0.036388 TCGACAAAGGAGGTGGATGC 60.036 55.000 0.00 0.00 0.00 3.91
907 1091 1.026718 CGACAAAGGAGGTGGATGCC 61.027 60.000 0.00 0.00 0.00 4.40
910 1094 1.000396 AAAGGAGGTGGATGCCTGC 60.000 57.895 0.00 0.00 45.84 4.85
911 1095 2.505364 AAAGGAGGTGGATGCCTGCC 62.505 60.000 0.02 0.00 46.54 4.85
912 1096 3.415087 GGAGGTGGATGCCTGCCT 61.415 66.667 0.00 0.00 40.56 4.75
914 1098 1.751927 GAGGTGGATGCCTGCCTTG 60.752 63.158 0.00 0.00 39.34 3.61
915 1099 2.036256 GGTGGATGCCTGCCTTGT 59.964 61.111 0.00 0.00 0.00 3.16
916 1100 1.207488 AGGTGGATGCCTGCCTTGTA 61.207 55.000 0.00 0.00 37.50 2.41
917 1101 0.323360 GGTGGATGCCTGCCTTGTAA 60.323 55.000 0.00 0.00 0.00 2.41
921 1105 0.947244 GATGCCTGCCTTGTAATCCG 59.053 55.000 0.00 0.00 0.00 4.18
922 1106 1.103398 ATGCCTGCCTTGTAATCCGC 61.103 55.000 0.00 0.00 0.00 5.54
925 1109 2.124901 TGCCTTGTAATCCGCCGG 60.125 61.111 0.00 0.00 0.00 6.13
926 1110 3.583086 GCCTTGTAATCCGCCGGC 61.583 66.667 19.07 19.07 0.00 6.13
927 1111 2.189521 CCTTGTAATCCGCCGGCT 59.810 61.111 26.68 8.22 0.00 5.52
928 1112 2.180204 CCTTGTAATCCGCCGGCTG 61.180 63.158 26.68 19.63 0.00 4.85
929 1113 1.153449 CTTGTAATCCGCCGGCTGA 60.153 57.895 26.68 24.98 0.00 4.26
930 1114 0.742990 CTTGTAATCCGCCGGCTGAA 60.743 55.000 24.89 9.77 0.00 3.02
931 1115 0.742990 TTGTAATCCGCCGGCTGAAG 60.743 55.000 24.89 8.49 0.00 3.02
932 1116 1.887707 GTAATCCGCCGGCTGAAGG 60.888 63.158 24.89 18.04 0.00 3.46
933 1117 3.101796 TAATCCGCCGGCTGAAGGG 62.102 63.158 24.89 17.64 0.00 3.95
939 1123 2.770048 CCGGCTGAAGGGGAGGAT 60.770 66.667 0.00 0.00 0.00 3.24
940 1124 2.378634 CCGGCTGAAGGGGAGGATT 61.379 63.158 0.00 0.00 0.00 3.01
941 1125 1.609783 CGGCTGAAGGGGAGGATTT 59.390 57.895 0.00 0.00 0.00 2.17
1040 1646 2.484264 CGTCTGTTCCCAATCAGTTTCC 59.516 50.000 0.00 0.00 33.89 3.13
1076 1682 2.741612 TGCAAGCACCAAATCGAAAAG 58.258 42.857 0.00 0.00 0.00 2.27
1078 1684 2.676076 CAAGCACCAAATCGAAAAGGG 58.324 47.619 0.00 0.00 0.00 3.95
1375 1996 3.060615 CTCCCCGACGACGTCCTT 61.061 66.667 21.63 0.00 37.88 3.36
1392 2013 0.826715 CTTCGAGGAATCCTGGAGCA 59.173 55.000 6.50 0.00 39.41 4.26
1403 2024 2.203640 TGGAGCACCTCGACCTGT 60.204 61.111 0.71 0.00 37.04 4.00
1555 2176 4.451150 GCCGACGTCATGGAGGCA 62.451 66.667 21.86 0.00 46.48 4.75
1624 2245 1.007502 GTGCAAGTGCGCCATCAAA 60.008 52.632 4.18 0.00 45.15 2.69
1697 2327 3.646976 TCGAGGACGCTATCGCCG 61.647 66.667 0.00 0.00 38.79 6.46
1907 2537 2.432146 ACCGATCTCATTAGAGCTTGCA 59.568 45.455 0.00 0.00 41.81 4.08
1987 2622 3.964221 GATCGACACGCCACGCTCA 62.964 63.158 0.00 0.00 0.00 4.26
1988 2623 3.567478 ATCGACACGCCACGCTCAA 62.567 57.895 0.00 0.00 0.00 3.02
1996 2631 2.270205 CCACGCTCAAGGCTCCAT 59.730 61.111 0.00 0.00 39.13 3.41
2011 2646 2.920524 CTCCATGAGCTCTGCTTCATT 58.079 47.619 16.19 0.00 39.88 2.57
2068 2703 2.158871 ACCCAAACTTACAGAAGTGCGA 60.159 45.455 0.00 0.00 45.50 5.10
2070 2705 3.502211 CCCAAACTTACAGAAGTGCGATT 59.498 43.478 0.00 0.00 45.50 3.34
2080 2715 3.686241 CAGAAGTGCGATTCCAATCTTCA 59.314 43.478 0.00 0.00 35.30 3.02
2113 2748 4.524318 CCGGTGCGGTTCGGCTAT 62.524 66.667 0.00 0.00 42.73 2.97
2138 2773 1.230635 GGAGCTTCGCTGCTTGTTCA 61.231 55.000 0.00 0.00 43.58 3.18
2146 2781 2.162208 TCGCTGCTTGTTCATCATTTCC 59.838 45.455 0.00 0.00 0.00 3.13
2165 2800 3.128349 TCCCGTATCATAAGCTTTTCGC 58.872 45.455 3.20 0.00 39.57 4.70
2285 2927 2.863704 GCCACATGAGTTTTTGTCTGCC 60.864 50.000 0.00 0.00 0.00 4.85
2339 2989 8.362639 AGCAATTTCATCTGTCTATTTGTGTTT 58.637 29.630 0.00 0.00 0.00 2.83
2351 3004 6.972328 GTCTATTTGTGTTTCTCTTGTTGCAA 59.028 34.615 0.00 0.00 0.00 4.08
2362 3015 3.899734 TCTTGTTGCAAATGTGGATTCG 58.100 40.909 0.00 0.00 0.00 3.34
2473 3126 1.068472 GCTATATCTCCCACGTGTCGG 60.068 57.143 15.65 9.74 0.00 4.79
2476 3129 0.750546 TATCTCCCACGTGTCGGAGG 60.751 60.000 29.36 18.02 44.99 4.30
2494 3147 3.574826 GGAGGACGACTTAGAGGCATAAT 59.425 47.826 0.00 0.00 0.00 1.28
2495 3148 4.039366 GGAGGACGACTTAGAGGCATAATT 59.961 45.833 0.00 0.00 0.00 1.40
2748 3406 5.820947 ACTAGAACGAAACAACACAAAGGAT 59.179 36.000 0.00 0.00 0.00 3.24
2758 3416 7.454260 AACAACACAAAGGATAAGATCTTCC 57.546 36.000 12.24 8.39 0.00 3.46
2760 3418 7.004086 ACAACACAAAGGATAAGATCTTCCAA 58.996 34.615 12.24 0.00 34.27 3.53
2846 3506 2.531206 GAAGTATCTGTGAGTCACGGC 58.469 52.381 24.77 12.66 40.25 5.68
2849 3509 0.733150 TATCTGTGAGTCACGGCGAG 59.267 55.000 24.77 13.59 40.25 5.03
2896 3556 7.360438 CGATCAAGACTATTTAAGCTTATGGGC 60.360 40.741 7.08 0.00 0.00 5.36
3172 3833 5.352016 CCGAACGTTAACAAATTCCCATCTA 59.648 40.000 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.351054 GTGTGGGTGGCTGGGAGG 62.351 72.222 0.00 0.00 0.00 4.30
2 3 4.918360 AGGTGTGGGTGGCTGGGA 62.918 66.667 0.00 0.00 0.00 4.37
3 4 4.351054 GAGGTGTGGGTGGCTGGG 62.351 72.222 0.00 0.00 0.00 4.45
4 5 3.252284 AGAGGTGTGGGTGGCTGG 61.252 66.667 0.00 0.00 0.00 4.85
5 6 2.033141 CAGAGGTGTGGGTGGCTG 59.967 66.667 0.00 0.00 0.00 4.85
6 7 1.645402 AAACAGAGGTGTGGGTGGCT 61.645 55.000 0.00 0.00 36.84 4.75
7 8 1.152756 AAACAGAGGTGTGGGTGGC 60.153 57.895 0.00 0.00 36.84 5.01
8 9 2.719376 CAAACAGAGGTGTGGGTGG 58.281 57.895 0.00 0.00 36.84 4.61
13 14 2.416547 CGCTTATCCAAACAGAGGTGTG 59.583 50.000 0.00 0.00 36.84 3.82
14 15 2.301870 TCGCTTATCCAAACAGAGGTGT 59.698 45.455 0.00 0.00 39.19 4.16
15 16 2.932614 CTCGCTTATCCAAACAGAGGTG 59.067 50.000 0.00 0.00 0.00 4.00
16 17 2.567615 ACTCGCTTATCCAAACAGAGGT 59.432 45.455 0.00 0.00 0.00 3.85
17 18 3.252974 ACTCGCTTATCCAAACAGAGG 57.747 47.619 0.00 0.00 0.00 3.69
18 19 5.168569 TGTAACTCGCTTATCCAAACAGAG 58.831 41.667 0.00 0.00 0.00 3.35
19 20 5.142061 TGTAACTCGCTTATCCAAACAGA 57.858 39.130 0.00 0.00 0.00 3.41
20 21 5.671329 GCTTGTAACTCGCTTATCCAAACAG 60.671 44.000 0.00 0.00 0.00 3.16
21 22 4.153475 GCTTGTAACTCGCTTATCCAAACA 59.847 41.667 0.00 0.00 0.00 2.83
22 23 4.436986 GGCTTGTAACTCGCTTATCCAAAC 60.437 45.833 0.00 0.00 0.00 2.93
23 24 3.687698 GGCTTGTAACTCGCTTATCCAAA 59.312 43.478 0.00 0.00 0.00 3.28
24 25 3.267483 GGCTTGTAACTCGCTTATCCAA 58.733 45.455 0.00 0.00 0.00 3.53
25 26 2.235155 TGGCTTGTAACTCGCTTATCCA 59.765 45.455 0.00 0.00 0.00 3.41
26 27 2.608090 GTGGCTTGTAACTCGCTTATCC 59.392 50.000 0.00 0.00 0.00 2.59
27 28 3.259064 TGTGGCTTGTAACTCGCTTATC 58.741 45.455 0.00 0.00 0.00 1.75
28 29 3.328382 TGTGGCTTGTAACTCGCTTAT 57.672 42.857 0.00 0.00 0.00 1.73
29 30 2.803956 GTTGTGGCTTGTAACTCGCTTA 59.196 45.455 0.00 0.00 0.00 3.09
30 31 1.602377 GTTGTGGCTTGTAACTCGCTT 59.398 47.619 0.00 0.00 0.00 4.68
31 32 1.202651 AGTTGTGGCTTGTAACTCGCT 60.203 47.619 0.00 0.00 29.12 4.93
32 33 1.069906 CAGTTGTGGCTTGTAACTCGC 60.070 52.381 0.00 0.00 32.69 5.03
33 34 1.531149 CCAGTTGTGGCTTGTAACTCG 59.469 52.381 0.00 0.00 36.89 4.18
34 35 2.808543 CTCCAGTTGTGGCTTGTAACTC 59.191 50.000 0.00 0.00 44.60 3.01
35 36 2.851195 CTCCAGTTGTGGCTTGTAACT 58.149 47.619 0.00 0.00 44.60 2.24
36 37 1.266989 GCTCCAGTTGTGGCTTGTAAC 59.733 52.381 0.00 0.00 44.60 2.50
37 38 1.604604 GCTCCAGTTGTGGCTTGTAA 58.395 50.000 0.00 0.00 44.60 2.41
38 39 0.250727 GGCTCCAGTTGTGGCTTGTA 60.251 55.000 0.00 0.00 44.60 2.41
39 40 1.529244 GGCTCCAGTTGTGGCTTGT 60.529 57.895 0.00 0.00 44.60 3.16
40 41 2.620112 CGGCTCCAGTTGTGGCTTG 61.620 63.158 0.00 0.00 44.60 4.01
41 42 2.281761 CGGCTCCAGTTGTGGCTT 60.282 61.111 0.00 0.00 44.60 4.35
42 43 3.537206 GACGGCTCCAGTTGTGGCT 62.537 63.158 0.00 0.00 44.60 4.75
43 44 3.050275 GACGGCTCCAGTTGTGGC 61.050 66.667 0.00 0.00 44.60 5.01
44 45 2.358737 GGACGGCTCCAGTTGTGG 60.359 66.667 0.00 0.00 46.63 4.17
45 46 2.425592 TGGACGGCTCCAGTTGTG 59.574 61.111 0.00 0.00 42.15 3.33
51 52 2.196997 CTGGGATTTGGACGGCTCCA 62.197 60.000 0.00 2.10 45.68 3.86
52 53 1.452108 CTGGGATTTGGACGGCTCC 60.452 63.158 0.00 0.00 37.04 4.70
53 54 2.115291 GCTGGGATTTGGACGGCTC 61.115 63.158 0.00 0.00 33.81 4.70
54 55 2.044946 GCTGGGATTTGGACGGCT 60.045 61.111 0.00 0.00 33.81 5.52
55 56 3.140814 GGCTGGGATTTGGACGGC 61.141 66.667 0.00 0.00 35.80 5.68
56 57 2.813226 TTCGGCTGGGATTTGGACGG 62.813 60.000 0.00 0.00 31.76 4.79
57 58 1.369091 CTTCGGCTGGGATTTGGACG 61.369 60.000 0.00 0.00 0.00 4.79
58 59 0.035439 TCTTCGGCTGGGATTTGGAC 60.035 55.000 0.00 0.00 0.00 4.02
59 60 0.035439 GTCTTCGGCTGGGATTTGGA 60.035 55.000 0.00 0.00 0.00 3.53
60 61 0.322456 TGTCTTCGGCTGGGATTTGG 60.322 55.000 0.00 0.00 0.00 3.28
61 62 1.533625 TTGTCTTCGGCTGGGATTTG 58.466 50.000 0.00 0.00 0.00 2.32
62 63 1.886542 GTTTGTCTTCGGCTGGGATTT 59.113 47.619 0.00 0.00 0.00 2.17
63 64 1.534729 GTTTGTCTTCGGCTGGGATT 58.465 50.000 0.00 0.00 0.00 3.01
64 65 0.673644 CGTTTGTCTTCGGCTGGGAT 60.674 55.000 0.00 0.00 0.00 3.85
65 66 1.301401 CGTTTGTCTTCGGCTGGGA 60.301 57.895 0.00 0.00 0.00 4.37
66 67 0.320073 TACGTTTGTCTTCGGCTGGG 60.320 55.000 0.00 0.00 0.00 4.45
67 68 1.193874 GTTACGTTTGTCTTCGGCTGG 59.806 52.381 0.00 0.00 0.00 4.85
68 69 1.862201 TGTTACGTTTGTCTTCGGCTG 59.138 47.619 0.00 0.00 0.00 4.85
69 70 2.228138 TGTTACGTTTGTCTTCGGCT 57.772 45.000 0.00 0.00 0.00 5.52
70 71 2.286025 AGTTGTTACGTTTGTCTTCGGC 59.714 45.455 0.00 0.00 0.00 5.54
71 72 3.060070 GGAGTTGTTACGTTTGTCTTCGG 60.060 47.826 0.00 0.00 0.00 4.30
72 73 3.800506 AGGAGTTGTTACGTTTGTCTTCG 59.199 43.478 0.00 0.00 0.00 3.79
73 74 4.569564 ACAGGAGTTGTTACGTTTGTCTTC 59.430 41.667 0.00 0.00 36.31 2.87
74 75 4.510571 ACAGGAGTTGTTACGTTTGTCTT 58.489 39.130 0.00 0.00 36.31 3.01
75 76 4.133013 ACAGGAGTTGTTACGTTTGTCT 57.867 40.909 0.00 0.00 36.31 3.41
76 77 4.084693 GCTACAGGAGTTGTTACGTTTGTC 60.085 45.833 0.00 0.00 41.29 3.18
77 78 3.805971 GCTACAGGAGTTGTTACGTTTGT 59.194 43.478 0.00 0.00 41.29 2.83
78 79 4.056050 AGCTACAGGAGTTGTTACGTTTG 58.944 43.478 0.00 0.00 41.29 2.93
79 80 4.332428 AGCTACAGGAGTTGTTACGTTT 57.668 40.909 0.00 0.00 41.29 3.60
80 81 5.656213 ATAGCTACAGGAGTTGTTACGTT 57.344 39.130 0.00 0.00 41.29 3.99
81 82 6.956202 ATATAGCTACAGGAGTTGTTACGT 57.044 37.500 0.00 0.00 41.29 3.57
82 83 9.343103 CATTATATAGCTACAGGAGTTGTTACG 57.657 37.037 0.00 0.00 41.29 3.18
83 84 9.640963 CCATTATATAGCTACAGGAGTTGTTAC 57.359 37.037 0.00 0.00 41.29 2.50
84 85 9.375974 ACCATTATATAGCTACAGGAGTTGTTA 57.624 33.333 0.00 0.00 41.29 2.41
85 86 8.263854 ACCATTATATAGCTACAGGAGTTGTT 57.736 34.615 0.00 0.00 41.29 2.83
86 87 7.857404 ACCATTATATAGCTACAGGAGTTGT 57.143 36.000 0.00 0.00 43.96 3.32
87 88 8.803235 TGTACCATTATATAGCTACAGGAGTTG 58.197 37.037 0.00 0.00 0.00 3.16
88 89 8.804204 GTGTACCATTATATAGCTACAGGAGTT 58.196 37.037 0.00 0.00 0.00 3.01
89 90 7.396623 GGTGTACCATTATATAGCTACAGGAGT 59.603 40.741 0.00 0.00 35.64 3.85
90 91 7.147880 GGGTGTACCATTATATAGCTACAGGAG 60.148 44.444 0.00 0.00 39.85 3.69
91 92 6.666546 GGGTGTACCATTATATAGCTACAGGA 59.333 42.308 0.00 0.00 39.85 3.86
92 93 6.405508 CGGGTGTACCATTATATAGCTACAGG 60.406 46.154 0.00 0.00 40.22 4.00
93 94 6.561614 CGGGTGTACCATTATATAGCTACAG 58.438 44.000 0.00 0.00 40.22 2.74
94 95 5.105635 GCGGGTGTACCATTATATAGCTACA 60.106 44.000 0.00 0.00 40.22 2.74
95 96 5.126707 AGCGGGTGTACCATTATATAGCTAC 59.873 44.000 0.00 0.00 40.22 3.58
96 97 5.266788 AGCGGGTGTACCATTATATAGCTA 58.733 41.667 0.00 0.00 40.22 3.32
97 98 4.094476 AGCGGGTGTACCATTATATAGCT 58.906 43.478 3.11 0.00 40.22 3.32
98 99 4.081862 TGAGCGGGTGTACCATTATATAGC 60.082 45.833 3.11 0.00 40.22 2.97
99 100 5.651530 CTGAGCGGGTGTACCATTATATAG 58.348 45.833 3.11 0.00 40.22 1.31
100 101 4.081862 GCTGAGCGGGTGTACCATTATATA 60.082 45.833 3.11 0.00 40.22 0.86
101 102 3.306780 GCTGAGCGGGTGTACCATTATAT 60.307 47.826 3.11 0.00 40.22 0.86
102 103 2.036733 GCTGAGCGGGTGTACCATTATA 59.963 50.000 3.11 0.00 40.22 0.98
103 104 1.202651 GCTGAGCGGGTGTACCATTAT 60.203 52.381 3.11 0.00 40.22 1.28
104 105 0.177141 GCTGAGCGGGTGTACCATTA 59.823 55.000 3.11 0.00 40.22 1.90
105 106 1.078426 GCTGAGCGGGTGTACCATT 60.078 57.895 3.11 0.00 40.22 3.16
106 107 2.584608 GCTGAGCGGGTGTACCAT 59.415 61.111 3.11 0.00 40.22 3.55
118 119 3.058160 CAAACTGGGCCCGCTGAG 61.058 66.667 19.37 11.73 0.00 3.35
119 120 4.659172 CCAAACTGGGCCCGCTGA 62.659 66.667 19.37 0.00 32.67 4.26
128 129 1.885871 GCTTGCTAGCCCAAACTGG 59.114 57.895 13.29 0.00 41.74 4.00
138 139 0.393537 CTTCCCCAGTGGCTTGCTAG 60.394 60.000 2.61 0.00 0.00 3.42
139 140 1.685224 CTTCCCCAGTGGCTTGCTA 59.315 57.895 2.61 0.00 0.00 3.49
140 141 2.437897 CTTCCCCAGTGGCTTGCT 59.562 61.111 2.61 0.00 0.00 3.91
141 142 3.376918 GCTTCCCCAGTGGCTTGC 61.377 66.667 2.61 1.17 0.00 4.01
142 143 0.829182 AAAGCTTCCCCAGTGGCTTG 60.829 55.000 2.61 0.00 43.05 4.01
143 144 0.105504 AAAAGCTTCCCCAGTGGCTT 60.106 50.000 2.61 0.13 45.31 4.35
144 145 0.105504 AAAAAGCTTCCCCAGTGGCT 60.106 50.000 2.61 0.00 36.53 4.75
145 146 0.033920 CAAAAAGCTTCCCCAGTGGC 59.966 55.000 2.61 0.00 0.00 5.01
146 147 0.681175 CCAAAAAGCTTCCCCAGTGG 59.319 55.000 0.63 0.63 0.00 4.00
147 148 0.681175 CCCAAAAAGCTTCCCCAGTG 59.319 55.000 0.00 0.00 0.00 3.66
148 149 1.121407 GCCCAAAAAGCTTCCCCAGT 61.121 55.000 0.00 0.00 0.00 4.00
149 150 1.673477 GCCCAAAAAGCTTCCCCAG 59.327 57.895 0.00 0.00 0.00 4.45
150 151 1.841103 GGCCCAAAAAGCTTCCCCA 60.841 57.895 0.00 0.00 0.00 4.96
151 152 2.942796 CGGCCCAAAAAGCTTCCCC 61.943 63.158 0.00 0.00 0.00 4.81
152 153 2.656646 CGGCCCAAAAAGCTTCCC 59.343 61.111 0.00 0.00 0.00 3.97
153 154 1.754380 AACCGGCCCAAAAAGCTTCC 61.754 55.000 0.00 0.00 0.00 3.46
154 155 0.599991 CAACCGGCCCAAAAAGCTTC 60.600 55.000 0.00 0.00 0.00 3.86
155 156 1.445518 CAACCGGCCCAAAAAGCTT 59.554 52.632 0.00 0.00 0.00 3.74
156 157 2.506957 CCAACCGGCCCAAAAAGCT 61.507 57.895 0.00 0.00 0.00 3.74
157 158 2.030412 CCAACCGGCCCAAAAAGC 59.970 61.111 0.00 0.00 0.00 3.51
158 159 1.112916 AGTCCAACCGGCCCAAAAAG 61.113 55.000 0.00 0.00 0.00 2.27
159 160 0.688087 AAGTCCAACCGGCCCAAAAA 60.688 50.000 0.00 0.00 0.00 1.94
160 161 1.075896 AAGTCCAACCGGCCCAAAA 60.076 52.632 0.00 0.00 0.00 2.44
161 162 1.830408 CAAGTCCAACCGGCCCAAA 60.830 57.895 0.00 0.00 0.00 3.28
162 163 2.203422 CAAGTCCAACCGGCCCAA 60.203 61.111 0.00 0.00 0.00 4.12
163 164 4.278513 CCAAGTCCAACCGGCCCA 62.279 66.667 0.00 0.00 0.00 5.36
167 168 3.920093 GAGGCCCAAGTCCAACCGG 62.920 68.421 0.00 0.00 0.00 5.28
168 169 2.359975 GAGGCCCAAGTCCAACCG 60.360 66.667 0.00 0.00 0.00 4.44
169 170 2.359975 CGAGGCCCAAGTCCAACC 60.360 66.667 0.00 0.00 0.00 3.77
170 171 2.359975 CCGAGGCCCAAGTCCAAC 60.360 66.667 0.00 0.00 0.00 3.77
171 172 2.406002 GAACCGAGGCCCAAGTCCAA 62.406 60.000 0.00 0.00 0.00 3.53
172 173 2.852075 AACCGAGGCCCAAGTCCA 60.852 61.111 0.00 0.00 0.00 4.02
173 174 2.046217 GAACCGAGGCCCAAGTCC 60.046 66.667 0.00 0.00 0.00 3.85
174 175 0.250770 AAAGAACCGAGGCCCAAGTC 60.251 55.000 0.00 0.00 0.00 3.01
175 176 0.250770 GAAAGAACCGAGGCCCAAGT 60.251 55.000 0.00 0.00 0.00 3.16
176 177 0.036875 AGAAAGAACCGAGGCCCAAG 59.963 55.000 0.00 0.00 0.00 3.61
177 178 0.250727 CAGAAAGAACCGAGGCCCAA 60.251 55.000 0.00 0.00 0.00 4.12
178 179 1.125093 TCAGAAAGAACCGAGGCCCA 61.125 55.000 0.00 0.00 0.00 5.36
179 180 0.391793 CTCAGAAAGAACCGAGGCCC 60.392 60.000 0.00 0.00 0.00 5.80
180 181 0.321996 ACTCAGAAAGAACCGAGGCC 59.678 55.000 0.00 0.00 0.00 5.19
181 182 1.801178 CAACTCAGAAAGAACCGAGGC 59.199 52.381 0.00 0.00 0.00 4.70
182 183 2.417719 CCAACTCAGAAAGAACCGAGG 58.582 52.381 0.00 0.00 0.00 4.63
183 184 1.801178 GCCAACTCAGAAAGAACCGAG 59.199 52.381 0.00 0.00 0.00 4.63
184 185 1.140052 TGCCAACTCAGAAAGAACCGA 59.860 47.619 0.00 0.00 0.00 4.69
185 186 1.264288 GTGCCAACTCAGAAAGAACCG 59.736 52.381 0.00 0.00 0.00 4.44
186 187 2.576615 AGTGCCAACTCAGAAAGAACC 58.423 47.619 0.00 0.00 26.77 3.62
209 210 3.112709 GACCGTGCCGACAAGAGC 61.113 66.667 0.00 0.00 0.00 4.09
210 211 1.006102 AAGACCGTGCCGACAAGAG 60.006 57.895 0.00 0.00 0.00 2.85
211 212 1.300620 CAAGACCGTGCCGACAAGA 60.301 57.895 0.00 0.00 0.00 3.02
212 213 0.670546 ATCAAGACCGTGCCGACAAG 60.671 55.000 0.00 0.00 0.00 3.16
213 214 0.669318 GATCAAGACCGTGCCGACAA 60.669 55.000 0.00 0.00 0.00 3.18
214 215 1.080093 GATCAAGACCGTGCCGACA 60.080 57.895 0.00 0.00 0.00 4.35
215 216 1.078759 CTGATCAAGACCGTGCCGAC 61.079 60.000 0.00 0.00 0.00 4.79
216 217 1.215382 CTGATCAAGACCGTGCCGA 59.785 57.895 0.00 0.00 0.00 5.54
217 218 2.456119 GCTGATCAAGACCGTGCCG 61.456 63.158 0.00 0.00 0.00 5.69
218 219 0.175760 TAGCTGATCAAGACCGTGCC 59.824 55.000 0.00 0.00 0.00 5.01
219 220 1.281899 GTAGCTGATCAAGACCGTGC 58.718 55.000 0.00 0.00 0.00 5.34
220 221 2.534298 CTGTAGCTGATCAAGACCGTG 58.466 52.381 0.00 0.00 0.00 4.94
221 222 1.478510 CCTGTAGCTGATCAAGACCGT 59.521 52.381 0.00 0.00 0.00 4.83
222 223 1.202463 CCCTGTAGCTGATCAAGACCG 60.202 57.143 0.00 0.00 0.00 4.79
223 224 1.474143 GCCCTGTAGCTGATCAAGACC 60.474 57.143 0.00 0.00 0.00 3.85
224 225 1.484240 AGCCCTGTAGCTGATCAAGAC 59.516 52.381 0.00 0.00 42.95 3.01
225 226 1.871418 AGCCCTGTAGCTGATCAAGA 58.129 50.000 0.00 0.00 42.95 3.02
226 227 2.706339 AAGCCCTGTAGCTGATCAAG 57.294 50.000 0.00 0.00 44.11 3.02
227 228 2.573462 AGAAAGCCCTGTAGCTGATCAA 59.427 45.455 0.00 0.00 44.11 2.57
228 229 2.191400 AGAAAGCCCTGTAGCTGATCA 58.809 47.619 0.00 0.00 44.11 2.92
229 230 2.998316 AGAAAGCCCTGTAGCTGATC 57.002 50.000 0.00 0.00 44.11 2.92
230 231 2.573462 TGAAGAAAGCCCTGTAGCTGAT 59.427 45.455 0.00 0.00 44.11 2.90
231 232 1.977854 TGAAGAAAGCCCTGTAGCTGA 59.022 47.619 0.00 0.00 44.11 4.26
232 233 2.289945 ACTGAAGAAAGCCCTGTAGCTG 60.290 50.000 0.00 0.00 44.11 4.24
234 235 2.481289 ACTGAAGAAAGCCCTGTAGC 57.519 50.000 0.00 0.00 0.00 3.58
235 236 5.606348 AGATACTGAAGAAAGCCCTGTAG 57.394 43.478 0.00 0.00 0.00 2.74
236 237 5.483937 TGAAGATACTGAAGAAAGCCCTGTA 59.516 40.000 0.00 0.00 0.00 2.74
237 238 4.287067 TGAAGATACTGAAGAAAGCCCTGT 59.713 41.667 0.00 0.00 0.00 4.00
238 239 4.836825 TGAAGATACTGAAGAAAGCCCTG 58.163 43.478 0.00 0.00 0.00 4.45
239 240 4.080638 CCTGAAGATACTGAAGAAAGCCCT 60.081 45.833 0.00 0.00 0.00 5.19
240 241 4.195416 CCTGAAGATACTGAAGAAAGCCC 58.805 47.826 0.00 0.00 0.00 5.19
241 242 4.080863 TCCCTGAAGATACTGAAGAAAGCC 60.081 45.833 0.00 0.00 0.00 4.35
242 243 5.091261 TCCCTGAAGATACTGAAGAAAGC 57.909 43.478 0.00 0.00 0.00 3.51
243 244 6.928492 GCTATCCCTGAAGATACTGAAGAAAG 59.072 42.308 0.00 0.00 0.00 2.62
244 245 6.384015 TGCTATCCCTGAAGATACTGAAGAAA 59.616 38.462 0.00 0.00 0.00 2.52
245 246 5.899547 TGCTATCCCTGAAGATACTGAAGAA 59.100 40.000 0.00 0.00 0.00 2.52
246 247 5.458595 TGCTATCCCTGAAGATACTGAAGA 58.541 41.667 0.00 0.00 0.00 2.87
247 248 5.279406 CCTGCTATCCCTGAAGATACTGAAG 60.279 48.000 0.00 0.00 0.00 3.02
248 249 4.590647 CCTGCTATCCCTGAAGATACTGAA 59.409 45.833 0.00 0.00 0.00 3.02
249 250 4.155709 CCTGCTATCCCTGAAGATACTGA 58.844 47.826 0.00 0.00 0.00 3.41
250 251 3.900601 ACCTGCTATCCCTGAAGATACTG 59.099 47.826 0.00 0.00 0.00 2.74
251 252 4.206244 ACCTGCTATCCCTGAAGATACT 57.794 45.455 0.00 0.00 0.00 2.12
252 253 5.047660 CAGTACCTGCTATCCCTGAAGATAC 60.048 48.000 0.00 0.00 0.00 2.24
253 254 5.080337 CAGTACCTGCTATCCCTGAAGATA 58.920 45.833 0.00 0.00 0.00 1.98
254 255 3.900601 CAGTACCTGCTATCCCTGAAGAT 59.099 47.826 0.00 0.00 0.00 2.40
255 256 3.052869 TCAGTACCTGCTATCCCTGAAGA 60.053 47.826 0.00 0.00 0.00 2.87
256 257 3.300388 TCAGTACCTGCTATCCCTGAAG 58.700 50.000 0.00 0.00 0.00 3.02
257 258 3.300388 CTCAGTACCTGCTATCCCTGAA 58.700 50.000 0.00 0.00 0.00 3.02
258 259 2.950781 CTCAGTACCTGCTATCCCTGA 58.049 52.381 0.00 0.00 0.00 3.86
259 260 1.342819 GCTCAGTACCTGCTATCCCTG 59.657 57.143 0.00 0.00 0.00 4.45
260 261 1.710816 GCTCAGTACCTGCTATCCCT 58.289 55.000 0.00 0.00 0.00 4.20
261 262 0.682292 GGCTCAGTACCTGCTATCCC 59.318 60.000 0.00 0.00 0.00 3.85
262 263 0.315568 CGGCTCAGTACCTGCTATCC 59.684 60.000 0.00 0.00 0.00 2.59
263 264 0.319125 GCGGCTCAGTACCTGCTATC 60.319 60.000 0.00 0.00 0.00 2.08
264 265 0.757188 AGCGGCTCAGTACCTGCTAT 60.757 55.000 0.00 0.00 36.00 2.97
265 266 1.379977 AGCGGCTCAGTACCTGCTA 60.380 57.895 0.00 0.00 36.00 3.49
266 267 2.681778 AGCGGCTCAGTACCTGCT 60.682 61.111 0.00 0.00 33.97 4.24
267 268 2.510238 CAGCGGCTCAGTACCTGC 60.510 66.667 0.00 0.00 0.00 4.85
268 269 1.153745 GTCAGCGGCTCAGTACCTG 60.154 63.158 0.00 0.00 0.00 4.00
269 270 1.606601 TGTCAGCGGCTCAGTACCT 60.607 57.895 0.00 0.00 0.00 3.08
270 271 1.446272 GTGTCAGCGGCTCAGTACC 60.446 63.158 0.00 0.00 0.00 3.34
271 272 1.446272 GGTGTCAGCGGCTCAGTAC 60.446 63.158 0.00 0.00 0.00 2.73
272 273 1.185618 AAGGTGTCAGCGGCTCAGTA 61.186 55.000 0.00 0.00 0.00 2.74
273 274 2.441822 GAAGGTGTCAGCGGCTCAGT 62.442 60.000 0.00 0.00 0.00 3.41
274 275 1.739562 GAAGGTGTCAGCGGCTCAG 60.740 63.158 0.00 0.00 0.00 3.35
275 276 2.343758 GAAGGTGTCAGCGGCTCA 59.656 61.111 0.00 0.00 0.00 4.26
276 277 2.811317 CGAAGGTGTCAGCGGCTC 60.811 66.667 0.00 0.00 0.00 4.70
279 280 3.414700 GTGCGAAGGTGTCAGCGG 61.415 66.667 0.00 0.00 0.00 5.52
280 281 3.767230 CGTGCGAAGGTGTCAGCG 61.767 66.667 0.00 0.00 0.00 5.18
281 282 4.077188 GCGTGCGAAGGTGTCAGC 62.077 66.667 0.00 0.00 0.00 4.26
282 283 2.661537 TGCGTGCGAAGGTGTCAG 60.662 61.111 0.00 0.00 0.00 3.51
283 284 2.964925 GTGCGTGCGAAGGTGTCA 60.965 61.111 0.00 0.00 0.00 3.58
284 285 2.658707 GAGTGCGTGCGAAGGTGTC 61.659 63.158 0.00 0.00 0.00 3.67
285 286 2.661866 GAGTGCGTGCGAAGGTGT 60.662 61.111 0.00 0.00 0.00 4.16
286 287 3.414700 GGAGTGCGTGCGAAGGTG 61.415 66.667 0.00 0.00 0.00 4.00
296 297 3.449227 TAGCTGGACCGGAGTGCG 61.449 66.667 9.46 0.00 37.08 5.34
297 298 2.184579 GTAGCTGGACCGGAGTGC 59.815 66.667 9.46 6.94 34.33 4.40
304 305 0.108756 GGTTGAGTCGTAGCTGGACC 60.109 60.000 14.08 8.10 34.97 4.46
315 316 1.004277 CGTCGTCTGCAGGTTGAGTC 61.004 60.000 15.13 0.00 0.00 3.36
326 327 4.406173 AGTCGGCTGCGTCGTCTG 62.406 66.667 0.00 0.00 27.33 3.51
403 404 3.537206 AACTTCTGCTCGCCCGCTT 62.537 57.895 0.00 0.00 0.00 4.68
420 421 2.037902 TGTACTCATCGGCCTTGTTCAA 59.962 45.455 0.00 0.00 0.00 2.69
441 443 0.690411 CCCCAGCTCTCTGTCTCCAT 60.690 60.000 0.00 0.00 38.66 3.41
470 473 3.140141 AATGGCCATGGAACCGCG 61.140 61.111 21.63 0.00 0.00 6.46
512 515 1.253593 TGTCTCATCTGCAGCTCCGT 61.254 55.000 9.47 0.00 0.00 4.69
518 522 0.738762 CCACGGTGTCTCATCTGCAG 60.739 60.000 7.63 7.63 0.00 4.41
615 620 1.001240 CTAGCGCGACTATGAGCTGC 61.001 60.000 12.10 0.00 44.92 5.25
622 627 1.284408 GCTCTGCTAGCGCGACTAT 59.716 57.895 12.10 0.00 42.53 2.12
650 655 2.438254 TCATGGGCACATCACCGC 60.438 61.111 0.00 0.00 34.35 5.68
652 657 0.035152 TCACTCATGGGCACATCACC 60.035 55.000 0.00 0.00 34.35 4.02
654 659 0.986527 AGTCACTCATGGGCACATCA 59.013 50.000 0.00 0.00 34.35 3.07
658 663 1.002868 AGCAGTCACTCATGGGCAC 60.003 57.895 0.00 0.00 0.00 5.01
659 664 1.002990 CAGCAGTCACTCATGGGCA 60.003 57.895 0.00 0.00 0.00 5.36
668 673 1.577922 CACCATGCACAGCAGTCAC 59.422 57.895 0.00 0.00 43.65 3.67
674 679 2.652530 CAACCCACCATGCACAGC 59.347 61.111 0.00 0.00 0.00 4.40
681 686 1.933812 CCTACCCCCAACCCACCAT 60.934 63.158 0.00 0.00 0.00 3.55
720 725 2.138656 ATACGCCCGGACGCATACTC 62.139 60.000 11.11 0.00 36.19 2.59
723 728 2.337170 CATACGCCCGGACGCATA 59.663 61.111 11.11 0.00 36.19 3.14
726 731 4.807039 ACACATACGCCCGGACGC 62.807 66.667 11.11 0.18 36.19 5.19
730 735 1.440708 TGTTAAACACATACGCCCGG 58.559 50.000 0.00 0.00 0.00 5.73
750 755 3.380479 TCAAACTCAAGGATCGTTCGT 57.620 42.857 0.00 0.00 0.00 3.85
771 776 1.067295 AAGCCATTGAGGAGGACACA 58.933 50.000 0.00 0.00 41.22 3.72
801 806 7.224557 GCTGGTATTGTTGTTTGATTTTTCTGT 59.775 33.333 0.00 0.00 0.00 3.41
816 821 6.263842 CCAATATCACTGATGCTGGTATTGTT 59.736 38.462 12.38 0.00 0.00 2.83
824 829 6.461640 TCTCATACCAATATCACTGATGCTG 58.538 40.000 1.42 0.00 0.00 4.41
833 838 9.904198 TTCTGTTGATTTCTCATACCAATATCA 57.096 29.630 0.00 0.00 0.00 2.15
835 840 9.347240 CCTTCTGTTGATTTCTCATACCAATAT 57.653 33.333 0.00 0.00 0.00 1.28
836 841 8.548025 TCCTTCTGTTGATTTCTCATACCAATA 58.452 33.333 0.00 0.00 0.00 1.90
838 843 6.778821 TCCTTCTGTTGATTTCTCATACCAA 58.221 36.000 0.00 0.00 0.00 3.67
839 844 6.373005 TCCTTCTGTTGATTTCTCATACCA 57.627 37.500 0.00 0.00 0.00 3.25
840 845 7.607991 TCTTTCCTTCTGTTGATTTCTCATACC 59.392 37.037 0.00 0.00 0.00 2.73
841 846 8.553459 TCTTTCCTTCTGTTGATTTCTCATAC 57.447 34.615 0.00 0.00 0.00 2.39
842 847 9.573166 TTTCTTTCCTTCTGTTGATTTCTCATA 57.427 29.630 0.00 0.00 0.00 2.15
843 848 8.469309 TTTCTTTCCTTCTGTTGATTTCTCAT 57.531 30.769 0.00 0.00 0.00 2.90
845 850 8.159344 TCTTTCTTTCCTTCTGTTGATTTCTC 57.841 34.615 0.00 0.00 0.00 2.87
846 851 8.525290 TTCTTTCTTTCCTTCTGTTGATTTCT 57.475 30.769 0.00 0.00 0.00 2.52
847 852 9.586435 TTTTCTTTCTTTCCTTCTGTTGATTTC 57.414 29.630 0.00 0.00 0.00 2.17
848 853 9.942850 TTTTTCTTTCTTTCCTTCTGTTGATTT 57.057 25.926 0.00 0.00 0.00 2.17
849 854 9.591792 CTTTTTCTTTCTTTCCTTCTGTTGATT 57.408 29.630 0.00 0.00 0.00 2.57
850 855 8.971073 TCTTTTTCTTTCTTTCCTTCTGTTGAT 58.029 29.630 0.00 0.00 0.00 2.57
851 856 8.244113 GTCTTTTTCTTTCTTTCCTTCTGTTGA 58.756 33.333 0.00 0.00 0.00 3.18
852 857 8.028938 TGTCTTTTTCTTTCTTTCCTTCTGTTG 58.971 33.333 0.00 0.00 0.00 3.33
853 858 8.029522 GTGTCTTTTTCTTTCTTTCCTTCTGTT 58.970 33.333 0.00 0.00 0.00 3.16
856 861 6.374613 ACGTGTCTTTTTCTTTCTTTCCTTCT 59.625 34.615 0.00 0.00 0.00 2.85
857 862 6.469275 CACGTGTCTTTTTCTTTCTTTCCTTC 59.531 38.462 7.58 0.00 0.00 3.46
860 1044 5.637809 ACACGTGTCTTTTTCTTTCTTTCC 58.362 37.500 17.22 0.00 0.00 3.13
869 1053 2.279659 TCGAACGACACGTGTCTTTTTC 59.720 45.455 37.63 31.92 39.99 2.29
882 1066 1.137513 CACCTCCTTTGTCGAACGAC 58.862 55.000 18.48 18.48 44.77 4.34
883 1067 0.032952 CCACCTCCTTTGTCGAACGA 59.967 55.000 0.00 0.00 0.00 3.85
884 1068 0.032952 TCCACCTCCTTTGTCGAACG 59.967 55.000 0.00 0.00 0.00 3.95
886 1070 1.610624 GCATCCACCTCCTTTGTCGAA 60.611 52.381 0.00 0.00 0.00 3.71
887 1071 0.036388 GCATCCACCTCCTTTGTCGA 60.036 55.000 0.00 0.00 0.00 4.20
888 1072 1.026718 GGCATCCACCTCCTTTGTCG 61.027 60.000 0.00 0.00 0.00 4.35
889 1073 0.329596 AGGCATCCACCTCCTTTGTC 59.670 55.000 0.00 0.00 33.62 3.18
891 1075 1.318158 GCAGGCATCCACCTCCTTTG 61.318 60.000 0.00 0.00 38.26 2.77
895 1079 2.988839 AAGGCAGGCATCCACCTCC 61.989 63.158 0.00 0.00 38.26 4.30
897 1081 1.207488 TACAAGGCAGGCATCCACCT 61.207 55.000 0.00 0.00 42.30 4.00
898 1082 0.323360 TTACAAGGCAGGCATCCACC 60.323 55.000 0.00 0.00 0.00 4.61
900 1084 1.410083 GGATTACAAGGCAGGCATCCA 60.410 52.381 5.61 0.00 31.99 3.41
901 1085 1.322442 GGATTACAAGGCAGGCATCC 58.678 55.000 0.00 0.00 0.00 3.51
902 1086 0.947244 CGGATTACAAGGCAGGCATC 59.053 55.000 0.00 0.00 0.00 3.91
903 1087 1.103398 GCGGATTACAAGGCAGGCAT 61.103 55.000 0.00 0.00 0.00 4.40
904 1088 1.748879 GCGGATTACAAGGCAGGCA 60.749 57.895 0.00 0.00 0.00 4.75
906 1090 2.180204 CGGCGGATTACAAGGCAGG 61.180 63.158 0.00 0.00 0.00 4.85
907 1091 2.180204 CCGGCGGATTACAAGGCAG 61.180 63.158 24.41 0.00 0.00 4.85
910 1094 2.180204 CAGCCGGCGGATTACAAGG 61.180 63.158 33.44 6.28 0.00 3.61
911 1095 0.742990 TTCAGCCGGCGGATTACAAG 60.743 55.000 33.44 11.72 0.00 3.16
912 1096 0.742990 CTTCAGCCGGCGGATTACAA 60.743 55.000 33.44 13.73 0.00 2.41
914 1098 1.887707 CCTTCAGCCGGCGGATTAC 60.888 63.158 33.44 12.27 0.00 1.89
915 1099 2.504032 CCTTCAGCCGGCGGATTA 59.496 61.111 33.44 13.53 0.00 1.75
916 1100 4.489771 CCCTTCAGCCGGCGGATT 62.490 66.667 33.44 14.59 0.00 3.01
922 1106 1.926426 AAATCCTCCCCTTCAGCCGG 61.926 60.000 0.00 0.00 0.00 6.13
925 1109 2.514458 TTGAAATCCTCCCCTTCAGC 57.486 50.000 0.00 0.00 31.11 4.26
1040 1646 1.236616 TGCATTTCTGACGGCAGTGG 61.237 55.000 19.93 7.49 42.84 4.00
1049 1655 3.612241 CGATTTGGTGCTTGCATTTCTGA 60.612 43.478 0.00 0.00 0.00 3.27
1078 1684 4.918201 CGATTCCCCTCCTGCGCC 62.918 72.222 4.18 0.00 0.00 6.53
1252 1858 0.734309 CCAATCGCTTGTATGCAGCA 59.266 50.000 0.00 0.00 0.00 4.41
1255 1861 1.742831 GGAACCAATCGCTTGTATGCA 59.257 47.619 0.00 0.00 0.00 3.96
1320 1926 4.452733 CTCGGTCGAGGTTGGGCC 62.453 72.222 12.09 0.00 38.51 5.80
1328 1937 0.660488 CTGTCCTCATCTCGGTCGAG 59.340 60.000 13.56 13.56 43.21 4.04
1375 1996 1.330655 GGTGCTCCAGGATTCCTCGA 61.331 60.000 0.98 0.33 0.00 4.04
1697 2327 2.329339 GCATTCAATCTCGCCGCC 59.671 61.111 0.00 0.00 0.00 6.13
1907 2537 1.834263 GGTGAGGTGTCTGAGCCTATT 59.166 52.381 1.25 0.00 34.81 1.73
1996 2631 0.327259 AGCCAATGAAGCAGAGCTCA 59.673 50.000 17.77 0.00 38.25 4.26
2011 2646 0.250684 TCCATCTGCAACGAAAGCCA 60.251 50.000 0.00 0.00 0.00 4.75
2068 2703 2.972625 TCGAAGCGTGAAGATTGGAAT 58.027 42.857 0.00 0.00 30.24 3.01
2070 2705 2.448926 TTCGAAGCGTGAAGATTGGA 57.551 45.000 0.00 0.00 31.27 3.53
2080 2715 1.666872 CGGAGGGTTTTCGAAGCGT 60.667 57.895 0.00 0.00 0.00 5.07
2138 2773 7.307989 CGAAAAGCTTATGATACGGGAAATGAT 60.308 37.037 0.00 0.00 0.00 2.45
2285 2927 8.864069 AGAAGAAACACATACGATATTCAGAG 57.136 34.615 0.00 0.00 0.00 3.35
2339 2989 4.320421 CGAATCCACATTTGCAACAAGAGA 60.320 41.667 0.00 0.00 0.00 3.10
2351 3004 3.364460 TGTTCCATCCGAATCCACATT 57.636 42.857 0.00 0.00 31.67 2.71
2362 3015 1.303309 CTGCTTCGGATGTTCCATCC 58.697 55.000 12.32 12.32 35.91 3.51
2473 3126 4.857509 ATTATGCCTCTAAGTCGTCCTC 57.142 45.455 0.00 0.00 0.00 3.71
2548 3201 9.998106 GCCAACTATGTATCTCTTTTCCTTATA 57.002 33.333 0.00 0.00 0.00 0.98
2715 3373 7.168637 GTGTTGTTTCGTTCTAGTTGATCAGTA 59.831 37.037 0.00 0.00 0.00 2.74
2748 3406 3.964031 GGAGGAGCTCTTGGAAGATCTTA 59.036 47.826 14.64 0.00 32.10 2.10
2849 3509 1.078848 AGGGTGCGAGATTGCTGAC 60.079 57.895 0.00 0.00 35.36 3.51
2896 3556 4.770795 CTCCACCTCATACCTTTACCTTG 58.229 47.826 0.00 0.00 0.00 3.61
2939 3600 4.079980 TGCGTATGTTAGCCACCATATT 57.920 40.909 0.00 0.00 0.00 1.28
3189 3850 3.005367 GGGATTTGAACTTTCGAAAGCCA 59.995 43.478 32.49 26.76 39.63 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.