Multiple sequence alignment - TraesCS7A01G217200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G217200 | chr7A | 100.000 | 7463 | 0 | 0 | 1 | 7463 | 183718156 | 183710694 | 0.000000e+00 | 13782.0 |
1 | TraesCS7A01G217200 | chr7A | 85.061 | 3367 | 304 | 105 | 950 | 4179 | 30810493 | 30813797 | 0.000000e+00 | 3247.0 |
2 | TraesCS7A01G217200 | chr7A | 86.498 | 1385 | 134 | 23 | 4316 | 5686 | 30813929 | 30815274 | 0.000000e+00 | 1472.0 |
3 | TraesCS7A01G217200 | chr7A | 83.555 | 602 | 65 | 18 | 6163 | 6740 | 30816528 | 30817119 | 3.960000e-147 | 532.0 |
4 | TraesCS7A01G217200 | chr7A | 85.882 | 85 | 2 | 6 | 5674 | 5752 | 30816227 | 30816307 | 1.730000e-11 | 82.4 |
5 | TraesCS7A01G217200 | chr7A | 100.000 | 42 | 0 | 0 | 6672 | 6713 | 183651672 | 183651631 | 2.230000e-10 | 78.7 |
6 | TraesCS7A01G217200 | chr7D | 94.716 | 5791 | 226 | 28 | 1 | 5754 | 179188833 | 179183086 | 0.000000e+00 | 8925.0 |
7 | TraesCS7A01G217200 | chr7D | 85.278 | 3179 | 300 | 88 | 1121 | 4184 | 30304558 | 30307683 | 0.000000e+00 | 3123.0 |
8 | TraesCS7A01G217200 | chr7D | 91.892 | 1258 | 42 | 22 | 5845 | 7071 | 179183079 | 179181851 | 0.000000e+00 | 1703.0 |
9 | TraesCS7A01G217200 | chr7D | 86.812 | 1380 | 130 | 22 | 4321 | 5686 | 30307816 | 30309157 | 0.000000e+00 | 1493.0 |
10 | TraesCS7A01G217200 | chr7D | 84.808 | 599 | 59 | 17 | 6134 | 6707 | 30310581 | 30311172 | 2.340000e-159 | 573.0 |
11 | TraesCS7A01G217200 | chr7D | 94.059 | 101 | 5 | 1 | 7087 | 7186 | 179181729 | 179181629 | 1.300000e-32 | 152.0 |
12 | TraesCS7A01G217200 | chr7D | 87.313 | 134 | 7 | 3 | 950 | 1083 | 30304282 | 30304405 | 2.170000e-30 | 145.0 |
13 | TraesCS7A01G217200 | chr7D | 92.222 | 90 | 7 | 0 | 25 | 114 | 356895689 | 356895600 | 2.190000e-25 | 128.0 |
14 | TraesCS7A01G217200 | chr7D | 87.059 | 85 | 4 | 3 | 5674 | 5752 | 30310273 | 30310356 | 1.030000e-13 | 89.8 |
15 | TraesCS7A01G217200 | chr7B | 93.115 | 3413 | 167 | 36 | 2669 | 6043 | 145374794 | 145371412 | 0.000000e+00 | 4939.0 |
16 | TraesCS7A01G217200 | chr7B | 94.620 | 1301 | 63 | 5 | 1307 | 2603 | 145376271 | 145374974 | 0.000000e+00 | 2008.0 |
17 | TraesCS7A01G217200 | chr7B | 89.406 | 1095 | 43 | 24 | 6134 | 7199 | 145371415 | 145370365 | 0.000000e+00 | 1312.0 |
18 | TraesCS7A01G217200 | chr7B | 87.349 | 332 | 24 | 6 | 952 | 1279 | 145377633 | 145377316 | 1.530000e-96 | 364.0 |
19 | TraesCS7A01G217200 | chr7B | 98.077 | 52 | 1 | 0 | 2620 | 2671 | 145374926 | 145374875 | 2.870000e-14 | 91.6 |
20 | TraesCS7A01G217200 | chr7B | 94.444 | 54 | 2 | 1 | 62 | 114 | 733613883 | 733613830 | 1.730000e-11 | 82.4 |
21 | TraesCS7A01G217200 | chr4A | 86.143 | 1898 | 180 | 40 | 1114 | 2946 | 698427201 | 698429080 | 0.000000e+00 | 1971.0 |
22 | TraesCS7A01G217200 | chr4A | 86.630 | 1451 | 143 | 22 | 4317 | 5752 | 698430572 | 698431986 | 0.000000e+00 | 1557.0 |
23 | TraesCS7A01G217200 | chr4A | 85.290 | 1278 | 102 | 43 | 2951 | 4179 | 698429202 | 698430442 | 0.000000e+00 | 1240.0 |
24 | TraesCS7A01G217200 | chr4A | 86.015 | 522 | 56 | 15 | 6134 | 6646 | 698432211 | 698432724 | 1.830000e-150 | 544.0 |
25 | TraesCS7A01G217200 | chr4A | 83.988 | 331 | 41 | 10 | 6323 | 6646 | 698462805 | 698463130 | 2.620000e-79 | 307.0 |
26 | TraesCS7A01G217200 | chr4A | 89.691 | 194 | 16 | 3 | 6134 | 6326 | 698462202 | 698462392 | 2.080000e-60 | 244.0 |
27 | TraesCS7A01G217200 | chr4A | 89.815 | 108 | 8 | 2 | 969 | 1076 | 698426841 | 698426945 | 1.310000e-27 | 135.0 |
28 | TraesCS7A01G217200 | chr4A | 86.905 | 84 | 5 | 3 | 5674 | 5752 | 698456628 | 698456710 | 1.030000e-13 | 89.8 |
29 | TraesCS7A01G217200 | chr1A | 76.443 | 849 | 156 | 35 | 1388 | 2208 | 367436751 | 367435919 | 3.220000e-113 | 420.0 |
30 | TraesCS7A01G217200 | chr1A | 80.289 | 553 | 86 | 17 | 3006 | 3541 | 367435245 | 367434699 | 5.430000e-106 | 396.0 |
31 | TraesCS7A01G217200 | chr1A | 81.586 | 353 | 45 | 11 | 4424 | 4775 | 367433926 | 367433593 | 2.650000e-69 | 274.0 |
32 | TraesCS7A01G217200 | chr1A | 81.098 | 328 | 51 | 7 | 5287 | 5609 | 367432997 | 367432676 | 1.240000e-62 | 252.0 |
33 | TraesCS7A01G217200 | chr1A | 92.857 | 112 | 8 | 0 | 3950 | 4061 | 367434421 | 367434310 | 5.990000e-36 | 163.0 |
34 | TraesCS7A01G217200 | chr1A | 85.401 | 137 | 16 | 4 | 2430 | 2565 | 367435669 | 367435536 | 1.010000e-28 | 139.0 |
35 | TraesCS7A01G217200 | chr1A | 92.857 | 98 | 4 | 3 | 6040 | 6135 | 532672892 | 532672796 | 1.010000e-28 | 139.0 |
36 | TraesCS7A01G217200 | chr1D | 80.576 | 556 | 84 | 15 | 3006 | 3542 | 294467971 | 294467421 | 2.510000e-109 | 407.0 |
37 | TraesCS7A01G217200 | chr1D | 82.203 | 354 | 41 | 12 | 4424 | 4775 | 294466513 | 294466180 | 1.230000e-72 | 285.0 |
38 | TraesCS7A01G217200 | chr1D | 91.736 | 121 | 9 | 1 | 3942 | 4061 | 294467049 | 294466929 | 4.630000e-37 | 167.0 |
39 | TraesCS7A01G217200 | chr1D | 93.750 | 80 | 5 | 0 | 7384 | 7463 | 416282773 | 416282694 | 3.660000e-23 | 121.0 |
40 | TraesCS7A01G217200 | chr1B | 79.603 | 554 | 91 | 16 | 3006 | 3542 | 396148804 | 396148256 | 1.970000e-100 | 377.0 |
41 | TraesCS7A01G217200 | chr1B | 75.361 | 832 | 163 | 33 | 1403 | 2208 | 396150291 | 396149476 | 5.500000e-96 | 363.0 |
42 | TraesCS7A01G217200 | chr1B | 82.153 | 353 | 43 | 10 | 4424 | 4775 | 396147350 | 396147017 | 1.230000e-72 | 285.0 |
43 | TraesCS7A01G217200 | chr1B | 90.909 | 121 | 10 | 1 | 3942 | 4061 | 396147888 | 396147768 | 2.150000e-35 | 161.0 |
44 | TraesCS7A01G217200 | chr1B | 91.346 | 104 | 6 | 3 | 6039 | 6140 | 56752489 | 56752387 | 1.010000e-28 | 139.0 |
45 | TraesCS7A01G217200 | chr1B | 89.583 | 48 | 3 | 1 | 534 | 579 | 188444519 | 188444566 | 8.090000e-05 | 60.2 |
46 | TraesCS7A01G217200 | chrUn | 92.746 | 193 | 9 | 2 | 7189 | 7381 | 62520223 | 62520036 | 2.650000e-69 | 274.0 |
47 | TraesCS7A01G217200 | chrUn | 92.746 | 193 | 9 | 2 | 7189 | 7381 | 62579581 | 62579394 | 2.650000e-69 | 274.0 |
48 | TraesCS7A01G217200 | chrUn | 92.746 | 193 | 9 | 2 | 7189 | 7381 | 363886199 | 363886012 | 2.650000e-69 | 274.0 |
49 | TraesCS7A01G217200 | chrUn | 91.710 | 193 | 11 | 2 | 7189 | 7381 | 62523173 | 62522986 | 5.740000e-66 | 263.0 |
50 | TraesCS7A01G217200 | chrUn | 91.192 | 193 | 12 | 2 | 7189 | 7381 | 62395499 | 62395312 | 2.670000e-64 | 257.0 |
51 | TraesCS7A01G217200 | chrUn | 91.192 | 193 | 12 | 2 | 7189 | 7381 | 62451143 | 62450956 | 2.670000e-64 | 257.0 |
52 | TraesCS7A01G217200 | chrUn | 89.583 | 48 | 3 | 1 | 534 | 579 | 79709179 | 79709226 | 8.090000e-05 | 60.2 |
53 | TraesCS7A01G217200 | chr6A | 93.158 | 190 | 8 | 2 | 7189 | 7378 | 4426497 | 4426681 | 2.650000e-69 | 274.0 |
54 | TraesCS7A01G217200 | chr6A | 92.632 | 190 | 9 | 2 | 7189 | 7378 | 4297581 | 4297765 | 1.230000e-67 | 268.0 |
55 | TraesCS7A01G217200 | chr4B | 92.935 | 184 | 8 | 2 | 7189 | 7372 | 637366807 | 637366629 | 5.740000e-66 | 263.0 |
56 | TraesCS7A01G217200 | chr6D | 93.878 | 98 | 3 | 3 | 6040 | 6135 | 464266281 | 464266185 | 2.170000e-30 | 145.0 |
57 | TraesCS7A01G217200 | chr2D | 93.750 | 96 | 6 | 0 | 6040 | 6135 | 643762841 | 643762746 | 2.170000e-30 | 145.0 |
58 | TraesCS7A01G217200 | chr2D | 93.902 | 82 | 5 | 0 | 7382 | 7463 | 493165421 | 493165502 | 2.830000e-24 | 124.0 |
59 | TraesCS7A01G217200 | chr5D | 92.784 | 97 | 6 | 1 | 6040 | 6135 | 65990491 | 65990587 | 1.010000e-28 | 139.0 |
60 | TraesCS7A01G217200 | chr5D | 90.476 | 105 | 7 | 3 | 6040 | 6143 | 558970435 | 558970537 | 1.310000e-27 | 135.0 |
61 | TraesCS7A01G217200 | chr5D | 91.489 | 47 | 3 | 1 | 534 | 579 | 51196094 | 51196048 | 6.250000e-06 | 63.9 |
62 | TraesCS7A01G217200 | chr5D | 89.583 | 48 | 3 | 1 | 534 | 579 | 51119184 | 51119137 | 8.090000e-05 | 60.2 |
63 | TraesCS7A01G217200 | chr5D | 89.583 | 48 | 3 | 1 | 534 | 579 | 51156603 | 51156556 | 8.090000e-05 | 60.2 |
64 | TraesCS7A01G217200 | chr5D | 89.583 | 48 | 3 | 1 | 534 | 579 | 51177107 | 51177060 | 8.090000e-05 | 60.2 |
65 | TraesCS7A01G217200 | chr5D | 89.583 | 48 | 3 | 1 | 534 | 579 | 339303537 | 339303490 | 8.090000e-05 | 60.2 |
66 | TraesCS7A01G217200 | chr3D | 92.784 | 97 | 6 | 1 | 6040 | 6135 | 138076336 | 138076240 | 1.010000e-28 | 139.0 |
67 | TraesCS7A01G217200 | chr3D | 87.912 | 91 | 9 | 2 | 25 | 114 | 75769504 | 75769415 | 1.020000e-18 | 106.0 |
68 | TraesCS7A01G217200 | chr5A | 91.089 | 101 | 8 | 1 | 6037 | 6136 | 593472224 | 593472324 | 1.310000e-27 | 135.0 |
69 | TraesCS7A01G217200 | chr5A | 95.000 | 80 | 4 | 0 | 7384 | 7463 | 528554867 | 528554946 | 7.860000e-25 | 126.0 |
70 | TraesCS7A01G217200 | chr6B | 96.203 | 79 | 3 | 0 | 7384 | 7462 | 134208724 | 134208646 | 6.080000e-26 | 130.0 |
71 | TraesCS7A01G217200 | chr5B | 95.000 | 80 | 4 | 0 | 7384 | 7463 | 318172800 | 318172879 | 7.860000e-25 | 126.0 |
72 | TraesCS7A01G217200 | chr5B | 96.000 | 50 | 2 | 0 | 28 | 77 | 60971449 | 60971498 | 1.730000e-11 | 82.4 |
73 | TraesCS7A01G217200 | chr5B | 89.583 | 48 | 3 | 1 | 534 | 579 | 60976530 | 60976577 | 8.090000e-05 | 60.2 |
74 | TraesCS7A01G217200 | chr4D | 92.222 | 90 | 5 | 2 | 7374 | 7463 | 363245695 | 363245782 | 7.860000e-25 | 126.0 |
75 | TraesCS7A01G217200 | chr2B | 90.625 | 96 | 6 | 3 | 21 | 114 | 182355128 | 182355222 | 2.830000e-24 | 124.0 |
76 | TraesCS7A01G217200 | chr2B | 89.655 | 58 | 5 | 1 | 7 | 64 | 182355064 | 182355120 | 1.040000e-08 | 73.1 |
77 | TraesCS7A01G217200 | chr2B | 94.595 | 37 | 0 | 1 | 5754 | 5788 | 501008285 | 501008249 | 1.000000e-03 | 56.5 |
78 | TraesCS7A01G217200 | chr2A | 93.671 | 79 | 5 | 0 | 7385 | 7463 | 673281614 | 673281692 | 1.320000e-22 | 119.0 |
79 | TraesCS7A01G217200 | chr2A | 89.024 | 82 | 6 | 3 | 29 | 108 | 71077439 | 71077519 | 1.710000e-16 | 99.0 |
80 | TraesCS7A01G217200 | chr3A | 91.463 | 82 | 7 | 0 | 7382 | 7463 | 458189180 | 458189261 | 6.120000e-21 | 113.0 |
81 | TraesCS7A01G217200 | chr3A | 87.500 | 96 | 9 | 3 | 21 | 114 | 323383396 | 323383490 | 2.850000e-19 | 108.0 |
82 | TraesCS7A01G217200 | chr3B | 89.011 | 91 | 7 | 3 | 7374 | 7463 | 106026393 | 106026481 | 7.920000e-20 | 110.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G217200 | chr7A | 183710694 | 183718156 | 7462 | True | 13782.000000 | 13782 | 100.000000 | 1 | 7463 | 1 | chr7A.!!$R2 | 7462 |
1 | TraesCS7A01G217200 | chr7A | 30810493 | 30817119 | 6626 | False | 1333.350000 | 3247 | 85.249000 | 950 | 6740 | 4 | chr7A.!!$F1 | 5790 |
2 | TraesCS7A01G217200 | chr7D | 179181629 | 179188833 | 7204 | True | 3593.333333 | 8925 | 93.555667 | 1 | 7186 | 3 | chr7D.!!$R2 | 7185 |
3 | TraesCS7A01G217200 | chr7D | 30304282 | 30311172 | 6890 | False | 1084.760000 | 3123 | 86.254000 | 950 | 6707 | 5 | chr7D.!!$F1 | 5757 |
4 | TraesCS7A01G217200 | chr7B | 145370365 | 145377633 | 7268 | True | 1742.920000 | 4939 | 92.513400 | 952 | 7199 | 5 | chr7B.!!$R2 | 6247 |
5 | TraesCS7A01G217200 | chr4A | 698426841 | 698432724 | 5883 | False | 1089.400000 | 1971 | 86.778600 | 969 | 6646 | 5 | chr4A.!!$F2 | 5677 |
6 | TraesCS7A01G217200 | chr4A | 698462202 | 698463130 | 928 | False | 275.500000 | 307 | 86.839500 | 6134 | 6646 | 2 | chr4A.!!$F3 | 512 |
7 | TraesCS7A01G217200 | chr1A | 367432676 | 367436751 | 4075 | True | 274.000000 | 420 | 82.945667 | 1388 | 5609 | 6 | chr1A.!!$R2 | 4221 |
8 | TraesCS7A01G217200 | chr1D | 294466180 | 294467971 | 1791 | True | 286.333333 | 407 | 84.838333 | 3006 | 4775 | 3 | chr1D.!!$R2 | 1769 |
9 | TraesCS7A01G217200 | chr1B | 396147017 | 396150291 | 3274 | True | 296.500000 | 377 | 82.006500 | 1403 | 4775 | 4 | chr1B.!!$R2 | 3372 |
10 | TraesCS7A01G217200 | chrUn | 62520036 | 62523173 | 3137 | True | 268.500000 | 274 | 92.228000 | 7189 | 7381 | 2 | chrUn.!!$R5 | 192 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
175 | 176 | 0.108662 | CGACCTGCACATGCTCTGTA | 60.109 | 55.0 | 5.31 | 0.00 | 42.66 | 2.74 | F |
767 | 782 | 0.250901 | ACTTGATGGTCCTGGTGCAC | 60.251 | 55.0 | 8.80 | 8.80 | 0.00 | 4.57 | F |
1676 | 2979 | 0.749091 | TGGATGGAGCTTCAATGCCG | 60.749 | 55.0 | 0.00 | 0.00 | 0.00 | 5.69 | F |
3142 | 4803 | 2.092375 | AGTAACCCCTGCTAGAATTGCC | 60.092 | 50.0 | 0.00 | 0.00 | 0.00 | 4.52 | F |
3199 | 4860 | 2.341846 | TGGGTGTTCAAGTCCTTGTC | 57.658 | 50.0 | 6.90 | 3.34 | 41.16 | 3.18 | F |
4907 | 6840 | 0.250166 | GCTACCAAGTGTGAACCGGT | 60.250 | 55.0 | 0.00 | 0.00 | 0.00 | 5.28 | F |
5678 | 7733 | 1.379527 | GCTATGTTGCGTAGGCCTTT | 58.620 | 50.0 | 12.58 | 0.00 | 38.85 | 3.11 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1193 | 1440 | 0.179032 | ACTTGACGATGTTGGCCACA | 60.179 | 50.000 | 3.88 | 7.85 | 40.71 | 4.17 | R |
2247 | 3595 | 2.911819 | ACGCCACCAAAATCAATACG | 57.088 | 45.000 | 0.00 | 0.00 | 0.00 | 3.06 | R |
3199 | 4860 | 2.170187 | CTCCAGTTCCCTTGGATCAGAG | 59.830 | 54.545 | 0.00 | 0.00 | 43.46 | 3.35 | R |
4269 | 6105 | 2.174319 | GGTAAGCTGCTACGCTGGC | 61.174 | 63.158 | 0.90 | 0.00 | 40.79 | 4.85 | R |
5181 | 7179 | 3.721087 | ATTCACCGACCAGGAAAGAAT | 57.279 | 42.857 | 0.00 | 0.00 | 45.00 | 2.40 | R |
6035 | 9281 | 1.192146 | TGGGACACAGGGAGTAGCAC | 61.192 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 | R |
7285 | 14084 | 1.030457 | CCCACGTTCGGCTATACTCT | 58.970 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
93 | 94 | 4.514577 | CCCCGCGCTCCTGTACAG | 62.515 | 72.222 | 16.34 | 16.34 | 0.00 | 2.74 |
136 | 137 | 1.525077 | GTTCACAACTGCCCCACGA | 60.525 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
175 | 176 | 0.108662 | CGACCTGCACATGCTCTGTA | 60.109 | 55.000 | 5.31 | 0.00 | 42.66 | 2.74 |
176 | 177 | 1.472201 | CGACCTGCACATGCTCTGTAT | 60.472 | 52.381 | 5.31 | 0.00 | 42.66 | 2.29 |
177 | 178 | 2.636830 | GACCTGCACATGCTCTGTATT | 58.363 | 47.619 | 5.31 | 0.00 | 42.66 | 1.89 |
190 | 191 | 3.682858 | GCTCTGTATTAAACCACTTGCGA | 59.317 | 43.478 | 0.00 | 0.00 | 0.00 | 5.10 |
197 | 198 | 8.583810 | TGTATTAAACCACTTGCGATCTATAC | 57.416 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
198 | 199 | 8.198778 | TGTATTAAACCACTTGCGATCTATACA | 58.801 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
199 | 200 | 9.204570 | GTATTAAACCACTTGCGATCTATACAT | 57.795 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
200 | 201 | 5.991328 | AAACCACTTGCGATCTATACATG | 57.009 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
214 | 218 | 5.389520 | TCTATACATGCTAGCAGAAGAGGT | 58.610 | 41.667 | 23.89 | 14.96 | 0.00 | 3.85 |
224 | 228 | 4.249638 | AGCAGAAGAGGTCTAGTCTGAT | 57.750 | 45.455 | 11.36 | 3.88 | 39.94 | 2.90 |
228 | 232 | 4.035091 | CAGAAGAGGTCTAGTCTGATGACG | 59.965 | 50.000 | 3.48 | 0.00 | 40.50 | 4.35 |
229 | 233 | 6.143061 | CAGAAGAGGTCTAGTCTGATGACGA | 61.143 | 48.000 | 3.48 | 0.00 | 40.50 | 4.20 |
231 | 235 | 9.265135 | CAGAAGAGGTCTAGTCTGATGACGAAG | 62.265 | 48.148 | 3.48 | 0.00 | 40.50 | 3.79 |
244 | 248 | 4.621460 | TGATGACGAAGAAAGCTTTAGTCG | 59.379 | 41.667 | 28.86 | 28.86 | 41.15 | 4.18 |
245 | 249 | 3.973657 | TGACGAAGAAAGCTTTAGTCGT | 58.026 | 40.909 | 33.05 | 33.05 | 41.15 | 4.34 |
258 | 273 | 3.416119 | TTAGTCGTGAGCAATAGTCCG | 57.584 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
276 | 291 | 1.852895 | CCGTGAAGTCGCTATTGCTAC | 59.147 | 52.381 | 0.00 | 0.00 | 36.97 | 3.58 |
284 | 299 | 0.940126 | CGCTATTGCTACCAAGGCAG | 59.060 | 55.000 | 0.00 | 0.00 | 40.90 | 4.85 |
311 | 326 | 2.408271 | TGCACATCCTGATCTTCACC | 57.592 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
334 | 349 | 0.907486 | CTGTCATTGGAGCTCCCTGA | 59.093 | 55.000 | 29.95 | 26.61 | 35.38 | 3.86 |
342 | 357 | 3.582998 | TGGAGCTCCCTGATTTTATGG | 57.417 | 47.619 | 29.95 | 0.00 | 35.38 | 2.74 |
351 | 366 | 4.104738 | TCCCTGATTTTATGGAGGGTGATC | 59.895 | 45.833 | 0.00 | 0.00 | 44.99 | 2.92 |
419 | 434 | 0.883814 | GCCTCTCATTCGCCCAGATG | 60.884 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
437 | 452 | 3.303135 | TTGGAGCCTCGTCGCACT | 61.303 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
438 | 453 | 2.867855 | TTGGAGCCTCGTCGCACTT | 61.868 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
458 | 473 | 2.111384 | TGCTGGGTCATTCTCTACCTC | 58.889 | 52.381 | 0.00 | 0.00 | 35.97 | 3.85 |
459 | 474 | 2.292521 | TGCTGGGTCATTCTCTACCTCT | 60.293 | 50.000 | 0.00 | 0.00 | 35.97 | 3.69 |
460 | 475 | 2.769095 | GCTGGGTCATTCTCTACCTCTT | 59.231 | 50.000 | 0.00 | 0.00 | 35.97 | 2.85 |
461 | 476 | 3.198853 | GCTGGGTCATTCTCTACCTCTTT | 59.801 | 47.826 | 0.00 | 0.00 | 35.97 | 2.52 |
462 | 477 | 4.682050 | GCTGGGTCATTCTCTACCTCTTTC | 60.682 | 50.000 | 0.00 | 0.00 | 35.97 | 2.62 |
463 | 478 | 4.689062 | TGGGTCATTCTCTACCTCTTTCT | 58.311 | 43.478 | 0.00 | 0.00 | 35.97 | 2.52 |
464 | 479 | 4.712337 | TGGGTCATTCTCTACCTCTTTCTC | 59.288 | 45.833 | 0.00 | 0.00 | 35.97 | 2.87 |
465 | 480 | 4.959839 | GGGTCATTCTCTACCTCTTTCTCT | 59.040 | 45.833 | 0.00 | 0.00 | 35.97 | 3.10 |
466 | 481 | 6.130569 | GGGTCATTCTCTACCTCTTTCTCTA | 58.869 | 44.000 | 0.00 | 0.00 | 35.97 | 2.43 |
467 | 482 | 6.040054 | GGGTCATTCTCTACCTCTTTCTCTAC | 59.960 | 46.154 | 0.00 | 0.00 | 35.97 | 2.59 |
468 | 483 | 6.040054 | GGTCATTCTCTACCTCTTTCTCTACC | 59.960 | 46.154 | 0.00 | 0.00 | 32.72 | 3.18 |
469 | 484 | 6.831868 | GTCATTCTCTACCTCTTTCTCTACCT | 59.168 | 42.308 | 0.00 | 0.00 | 0.00 | 3.08 |
470 | 485 | 7.012989 | GTCATTCTCTACCTCTTTCTCTACCTC | 59.987 | 44.444 | 0.00 | 0.00 | 0.00 | 3.85 |
519 | 534 | 4.838486 | CGGAGCCTCGTCGCACTC | 62.838 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
572 | 587 | 2.452600 | TTGGTCAGGAATTATGCCCC | 57.547 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
592 | 607 | 9.605951 | ATGCCCCTATATAATTTGACTGAAAAT | 57.394 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
621 | 636 | 9.738832 | GATGTCTTAGACTATCTCAAAGTAACC | 57.261 | 37.037 | 13.86 | 0.00 | 33.15 | 2.85 |
633 | 648 | 5.610982 | TCTCAAAGTAACCATGCCCCTATAT | 59.389 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
637 | 652 | 7.888021 | TCAAAGTAACCATGCCCCTATATAATG | 59.112 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
646 | 661 | 5.609782 | TGCCCCTATATAATGGGACTGTAT | 58.390 | 41.667 | 17.50 | 0.00 | 46.15 | 2.29 |
671 | 686 | 2.431057 | GGTAGACTGTGTGGACTATGGG | 59.569 | 54.545 | 0.00 | 0.00 | 0.00 | 4.00 |
674 | 689 | 2.108168 | GACTGTGTGGACTATGGGCTA | 58.892 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
679 | 694 | 6.082031 | ACTGTGTGGACTATGGGCTATAATA | 58.918 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
767 | 782 | 0.250901 | ACTTGATGGTCCTGGTGCAC | 60.251 | 55.000 | 8.80 | 8.80 | 0.00 | 4.57 |
774 | 789 | 0.954452 | GGTCCTGGTGCACTTTTCTG | 59.046 | 55.000 | 17.98 | 3.83 | 0.00 | 3.02 |
808 | 823 | 9.530633 | GTAGTACTATATAAACTGCTTTGTGCT | 57.469 | 33.333 | 5.75 | 0.00 | 43.37 | 4.40 |
844 | 859 | 9.046296 | ACTAACAAACTATATGAACAGCATAGC | 57.954 | 33.333 | 0.00 | 0.00 | 42.45 | 2.97 |
1071 | 1093 | 1.224592 | GGATGTCCGCACCCAGAAT | 59.775 | 57.895 | 0.00 | 0.00 | 0.00 | 2.40 |
1257 | 1516 | 1.269936 | ACAAGGTACGTTCCTTCCACG | 60.270 | 52.381 | 22.18 | 14.02 | 44.87 | 4.94 |
1284 | 1557 | 5.679906 | CAAACGAATCCTGTTACTGAAGTG | 58.320 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1319 | 2604 | 4.017407 | AGGATCAGTGGAGTAGACAGGTTA | 60.017 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
1330 | 2615 | 5.219739 | AGTAGACAGGTTATGGATCCACAT | 58.780 | 41.667 | 18.99 | 4.55 | 34.90 | 3.21 |
1341 | 2626 | 7.201821 | GGTTATGGATCCACATTAGTTTTGAGG | 60.202 | 40.741 | 18.99 | 0.00 | 32.39 | 3.86 |
1343 | 2629 | 5.500234 | TGGATCCACATTAGTTTTGAGGAG | 58.500 | 41.667 | 11.44 | 0.00 | 37.29 | 3.69 |
1469 | 2755 | 1.153349 | GTTGGAGGTCGAGCATCCC | 60.153 | 63.158 | 18.15 | 14.54 | 46.85 | 3.85 |
1542 | 2842 | 7.951530 | ACCATTGCTTTGTTCTTAGATTTTG | 57.048 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1676 | 2979 | 0.749091 | TGGATGGAGCTTCAATGCCG | 60.749 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1683 | 2986 | 2.414691 | GGAGCTTCAATGCCGAGTTTTC | 60.415 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1738 | 3049 | 7.014615 | ACACATGATGCTCCTTTTCTTTTTACT | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1851 | 3179 | 4.587262 | AGTACCCCTTCCATTTTGAACAAC | 59.413 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
1950 | 3287 | 4.705507 | AGTATGTCGAGGAAAAGCTGTCTA | 59.294 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2175 | 3514 | 4.777366 | TCCTATGGTCATGTGTTCTTCAGA | 59.223 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
2237 | 3585 | 3.128242 | GTGGAGCTCAGAAATTGATGGTG | 59.872 | 47.826 | 17.19 | 0.00 | 34.68 | 4.17 |
2247 | 3595 | 3.648339 | AATTGATGGTGCAGTTGTCAC | 57.352 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
2442 | 3830 | 4.737054 | CCTTGGCTGAAACAATGTGATAC | 58.263 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2730 | 4264 | 8.983724 | GGCAAAATTTATTTACAACTTGTGCTA | 58.016 | 29.630 | 4.57 | 0.00 | 33.83 | 3.49 |
2833 | 4368 | 9.578439 | GTAATCTTACGTCTACCTTAATGTTGT | 57.422 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
2956 | 4617 | 5.650266 | TGATTCATTTAACATGCGGTTAGGT | 59.350 | 36.000 | 0.00 | 0.00 | 42.63 | 3.08 |
3142 | 4803 | 2.092375 | AGTAACCCCTGCTAGAATTGCC | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3168 | 4829 | 7.000472 | TGTCTTGATTTCAACCTTCAGAAGAT | 59.000 | 34.615 | 12.14 | 0.00 | 0.00 | 2.40 |
3199 | 4860 | 2.341846 | TGGGTGTTCAAGTCCTTGTC | 57.658 | 50.000 | 6.90 | 3.34 | 41.16 | 3.18 |
3244 | 4905 | 6.432783 | AGAAGATCCGTGAGAGGTATATTCAG | 59.567 | 42.308 | 0.00 | 0.00 | 29.63 | 3.02 |
3350 | 5034 | 6.084326 | TCCTGTTTGTTTCTAATTTCCTGC | 57.916 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
3356 | 5040 | 4.331968 | TGTTTCTAATTTCCTGCGATGGT | 58.668 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
3360 | 5044 | 5.607939 | TCTAATTTCCTGCGATGGTTCTA | 57.392 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
3543 | 5252 | 8.611757 | TGATATGTCATTGAAGGTATGTTTTCG | 58.388 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
3803 | 5541 | 3.418047 | CACCTTACGTTCCCTTCCAATT | 58.582 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
3888 | 5653 | 6.980593 | TGAATTTGAAAAGATGTACTGGGTG | 58.019 | 36.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3921 | 5687 | 7.280876 | GTGTATGTGGATATCACTTGTGTTGAT | 59.719 | 37.037 | 4.83 | 0.00 | 46.20 | 2.57 |
4079 | 5845 | 9.420118 | TGGTATGGCTTATTTCTTCATATTGTT | 57.580 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
4153 | 5937 | 4.880120 | TCTTGAATCTCATCCATGACTTGC | 59.120 | 41.667 | 0.00 | 0.00 | 32.50 | 4.01 |
4154 | 5938 | 3.548770 | TGAATCTCATCCATGACTTGCC | 58.451 | 45.455 | 0.00 | 0.00 | 32.50 | 4.52 |
4155 | 5939 | 3.201487 | TGAATCTCATCCATGACTTGCCT | 59.799 | 43.478 | 0.00 | 0.00 | 32.50 | 4.75 |
4156 | 5940 | 2.704464 | TCTCATCCATGACTTGCCTG | 57.296 | 50.000 | 0.00 | 0.00 | 32.50 | 4.85 |
4311 | 6180 | 5.691754 | CAGTCTTTTGTTTTGCAATAGGACC | 59.308 | 40.000 | 0.00 | 0.00 | 36.96 | 4.46 |
4313 | 6182 | 5.920840 | GTCTTTTGTTTTGCAATAGGACCTC | 59.079 | 40.000 | 0.00 | 0.00 | 36.96 | 3.85 |
4335 | 6207 | 8.985805 | ACCTCGTTAGTAATAAAACAACTTCTG | 58.014 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
4349 | 6221 | 5.380043 | ACAACTTCTGTCATTGATGTTCCT | 58.620 | 37.500 | 0.00 | 0.00 | 29.87 | 3.36 |
4352 | 6224 | 7.041098 | ACAACTTCTGTCATTGATGTTCCTAAC | 60.041 | 37.037 | 0.00 | 0.00 | 29.87 | 2.34 |
4400 | 6272 | 6.664515 | TCAAGCCAAAATTAACTACTTGTCG | 58.335 | 36.000 | 0.00 | 0.00 | 35.64 | 4.35 |
4612 | 6533 | 3.729716 | GCTAGCTTTACTACGACGAATGG | 59.270 | 47.826 | 7.70 | 0.00 | 0.00 | 3.16 |
4640 | 6561 | 5.645497 | CAGCATTAGTTTGAAAGCTAGAGGT | 59.355 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4641 | 6562 | 5.645497 | AGCATTAGTTTGAAAGCTAGAGGTG | 59.355 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4824 | 6745 | 1.141254 | TGTCGCCTTGTTGTTTCCCTA | 59.859 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
4907 | 6840 | 0.250166 | GCTACCAAGTGTGAACCGGT | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
5000 | 6939 | 6.553953 | TTCTTGTTGCTGGTCCATACTATA | 57.446 | 37.500 | 0.00 | 0.00 | 0.00 | 1.31 |
5003 | 6942 | 3.389983 | TGTTGCTGGTCCATACTATACCC | 59.610 | 47.826 | 0.00 | 0.00 | 31.97 | 3.69 |
5171 | 7167 | 5.528690 | TCTGCCATTTCACATAATAGTGCTC | 59.471 | 40.000 | 0.00 | 0.00 | 39.35 | 4.26 |
5181 | 7179 | 7.826690 | TCACATAATAGTGCTCGCATTAGATA | 58.173 | 34.615 | 0.00 | 0.00 | 39.35 | 1.98 |
5234 | 7266 | 8.891671 | TGTAAGTTATCGTTTTCTTGTAGGTT | 57.108 | 30.769 | 0.00 | 0.00 | 0.00 | 3.50 |
5236 | 7268 | 8.981647 | GTAAGTTATCGTTTTCTTGTAGGTTGA | 58.018 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
5243 | 7275 | 8.441312 | TCGTTTTCTTGTAGGTTGAAACTAAT | 57.559 | 30.769 | 0.00 | 0.00 | 30.66 | 1.73 |
5244 | 7276 | 8.895737 | TCGTTTTCTTGTAGGTTGAAACTAATT | 58.104 | 29.630 | 0.00 | 0.00 | 30.66 | 1.40 |
5348 | 7398 | 2.271800 | GTGTACCTGGAGAATCTTGCG | 58.728 | 52.381 | 0.00 | 0.00 | 33.73 | 4.85 |
5438 | 7490 | 5.695851 | AGGTTTGCTCAGTTATCTTTGTG | 57.304 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
5488 | 7543 | 5.762179 | TGATATACTAATGGGAGCAAGGG | 57.238 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
5495 | 7550 | 1.719063 | ATGGGAGCAAGGGTGTGTGT | 61.719 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
5678 | 7733 | 1.379527 | GCTATGTTGCGTAGGCCTTT | 58.620 | 50.000 | 12.58 | 0.00 | 38.85 | 3.11 |
5765 | 8988 | 8.441311 | AGCAATGATATACTCCCTCTATCAAA | 57.559 | 34.615 | 0.00 | 0.00 | 35.96 | 2.69 |
5767 | 8990 | 9.678260 | GCAATGATATACTCCCTCTATCAAAAT | 57.322 | 33.333 | 0.00 | 0.00 | 35.96 | 1.82 |
5899 | 9140 | 3.758554 | AGCTTTCTTTTGTATCGCACCAT | 59.241 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
6035 | 9281 | 0.175302 | TGCCCACTGCTGTTTTGTTG | 59.825 | 50.000 | 0.00 | 0.00 | 42.00 | 3.33 |
6047 | 9293 | 2.948979 | TGTTTTGTTGTGCTACTCCCTG | 59.051 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
6063 | 9309 | 4.600111 | ACTCCCTGTGTCCCAAAATAACTA | 59.400 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
6066 | 9312 | 5.491078 | TCCCTGTGTCCCAAAATAACTATCT | 59.509 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
6067 | 9313 | 5.823045 | CCCTGTGTCCCAAAATAACTATCTC | 59.177 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
6114 | 9360 | 5.599999 | AGTTGTACTGAAGTTGAGACACT | 57.400 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
6115 | 9361 | 5.978814 | AGTTGTACTGAAGTTGAGACACTT | 58.021 | 37.500 | 0.00 | 0.00 | 39.84 | 3.16 |
6161 | 9409 | 4.336433 | CACATGTTCAGTTTGTGTCTTCCT | 59.664 | 41.667 | 0.00 | 0.00 | 36.77 | 3.36 |
6165 | 9413 | 6.174720 | TGTTCAGTTTGTGTCTTCCTCTAT | 57.825 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
6301 | 9583 | 1.478105 | GATCATTCAGGTTGGTTGGCC | 59.522 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
6458 | 10159 | 1.349357 | GGAAGAGTCTGGCCAAGAAGT | 59.651 | 52.381 | 7.01 | 0.00 | 36.40 | 3.01 |
6488 | 10189 | 0.668535 | GCCATTTTACGATCCCTGGC | 59.331 | 55.000 | 7.17 | 7.17 | 42.00 | 4.85 |
6527 | 10230 | 1.414181 | GGCTGGCTGCTTATAGACTCA | 59.586 | 52.381 | 16.14 | 0.00 | 42.39 | 3.41 |
6627 | 10336 | 5.046376 | TGGATGTATGAGTGATTGAGTGTGT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
6655 | 10370 | 1.101331 | GTGTGGGTAGTAGGACTCGG | 58.899 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
6778 | 10514 | 5.460646 | CATCATGTTCGGCCCAATTAATAC | 58.539 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
6815 | 10553 | 8.892723 | TGGTTTAATATGTGAGCAATTAGACAG | 58.107 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
6929 | 10673 | 6.506500 | TTTTACACCTTTTCCACGTTTGTA | 57.493 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
6937 | 10681 | 5.470777 | CCTTTTCCACGTTTGTATTGGTAGA | 59.529 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
7136 | 10986 | 5.682212 | GCAACCTTGTTTCTTTTGGATCAGT | 60.682 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
7175 | 11026 | 3.255642 | TCTTTTCTTTTGCGGGAAGATGG | 59.744 | 43.478 | 0.00 | 0.00 | 33.48 | 3.51 |
7187 | 11038 | 2.755103 | GGGAAGATGGACATGTTTCACC | 59.245 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
7207 | 11058 | 1.363744 | GAGAAGTGCATCCCTGAACG | 58.636 | 55.000 | 0.00 | 0.00 | 35.89 | 3.95 |
7283 | 14082 | 3.146618 | TCAGCTAAGCGTGCTAGTTAC | 57.853 | 47.619 | 0.00 | 0.00 | 38.92 | 2.50 |
7284 | 14083 | 2.753452 | TCAGCTAAGCGTGCTAGTTACT | 59.247 | 45.455 | 0.00 | 0.00 | 38.92 | 2.24 |
7285 | 14084 | 3.943381 | TCAGCTAAGCGTGCTAGTTACTA | 59.057 | 43.478 | 0.00 | 0.00 | 38.92 | 1.82 |
7302 | 14101 | 5.236047 | AGTTACTAGAGTATAGCCGAACGTG | 59.764 | 44.000 | 0.00 | 0.00 | 0.00 | 4.49 |
7331 | 14130 | 5.522460 | AGCAAACTGAAACGTATATGCGTAT | 59.478 | 36.000 | 19.28 | 7.17 | 45.00 | 3.06 |
7346 | 14145 | 3.482436 | TGCGTATTCAAAGGACCAAACT | 58.518 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
7378 | 14177 | 1.291877 | CTGACACAAGCAGGGTACGC | 61.292 | 60.000 | 0.77 | 0.77 | 30.42 | 4.42 |
7381 | 14180 | 4.308458 | ACAAGCAGGGTACGCGCA | 62.308 | 61.111 | 21.71 | 0.00 | 0.00 | 6.09 |
7382 | 14181 | 3.788766 | CAAGCAGGGTACGCGCAC | 61.789 | 66.667 | 21.71 | 2.26 | 0.00 | 5.34 |
7389 | 14188 | 4.015382 | GGTACGCGCACGGCAAAA | 62.015 | 61.111 | 5.73 | 0.00 | 46.04 | 2.44 |
7390 | 14189 | 2.174835 | GTACGCGCACGGCAAAAT | 59.825 | 55.556 | 5.73 | 0.00 | 46.04 | 1.82 |
7391 | 14190 | 1.441349 | GTACGCGCACGGCAAAATT | 60.441 | 52.632 | 5.73 | 0.00 | 46.04 | 1.82 |
7392 | 14191 | 1.441182 | TACGCGCACGGCAAAATTG | 60.441 | 52.632 | 5.73 | 0.00 | 46.04 | 2.32 |
7393 | 14192 | 1.842698 | TACGCGCACGGCAAAATTGA | 61.843 | 50.000 | 5.73 | 0.00 | 46.04 | 2.57 |
7394 | 14193 | 1.801113 | CGCGCACGGCAAAATTGAT | 60.801 | 52.632 | 8.75 | 0.00 | 43.84 | 2.57 |
7395 | 14194 | 0.522286 | CGCGCACGGCAAAATTGATA | 60.522 | 50.000 | 8.75 | 0.00 | 43.84 | 2.15 |
7396 | 14195 | 1.623359 | GCGCACGGCAAAATTGATAA | 58.377 | 45.000 | 0.30 | 0.00 | 42.87 | 1.75 |
7397 | 14196 | 1.989165 | GCGCACGGCAAAATTGATAAA | 59.011 | 42.857 | 0.30 | 0.00 | 42.87 | 1.40 |
7398 | 14197 | 2.602660 | GCGCACGGCAAAATTGATAAAT | 59.397 | 40.909 | 0.30 | 0.00 | 42.87 | 1.40 |
7399 | 14198 | 3.061965 | GCGCACGGCAAAATTGATAAATT | 59.938 | 39.130 | 0.30 | 0.00 | 42.87 | 1.82 |
7400 | 14199 | 4.435386 | GCGCACGGCAAAATTGATAAATTT | 60.435 | 37.500 | 0.30 | 0.00 | 42.87 | 1.82 |
7401 | 14200 | 5.014483 | CGCACGGCAAAATTGATAAATTTG | 58.986 | 37.500 | 1.29 | 0.00 | 37.17 | 2.32 |
7402 | 14201 | 5.164012 | CGCACGGCAAAATTGATAAATTTGA | 60.164 | 36.000 | 1.29 | 0.00 | 36.41 | 2.69 |
7403 | 14202 | 6.014898 | GCACGGCAAAATTGATAAATTTGAC | 58.985 | 36.000 | 1.29 | 2.84 | 38.43 | 3.18 |
7404 | 14203 | 6.533185 | CACGGCAAAATTGATAAATTTGACC | 58.467 | 36.000 | 1.29 | 5.81 | 38.55 | 4.02 |
7405 | 14204 | 6.368516 | CACGGCAAAATTGATAAATTTGACCT | 59.631 | 34.615 | 13.98 | 3.76 | 38.55 | 3.85 |
7406 | 14205 | 7.543868 | CACGGCAAAATTGATAAATTTGACCTA | 59.456 | 33.333 | 13.98 | 0.00 | 38.55 | 3.08 |
7407 | 14206 | 8.257306 | ACGGCAAAATTGATAAATTTGACCTAT | 58.743 | 29.630 | 13.98 | 4.24 | 38.55 | 2.57 |
7408 | 14207 | 8.542132 | CGGCAAAATTGATAAATTTGACCTATG | 58.458 | 33.333 | 13.98 | 5.22 | 38.55 | 2.23 |
7409 | 14208 | 9.598517 | GGCAAAATTGATAAATTTGACCTATGA | 57.401 | 29.630 | 1.29 | 0.00 | 36.32 | 2.15 |
7424 | 14223 | 9.474920 | TTTGACCTATGAACAAAATCAAATCAC | 57.525 | 29.630 | 0.00 | 0.00 | 31.51 | 3.06 |
7425 | 14224 | 8.175925 | TGACCTATGAACAAAATCAAATCACA | 57.824 | 30.769 | 0.00 | 0.00 | 32.06 | 3.58 |
7426 | 14225 | 8.298854 | TGACCTATGAACAAAATCAAATCACAG | 58.701 | 33.333 | 0.00 | 0.00 | 32.06 | 3.66 |
7427 | 14226 | 8.408043 | ACCTATGAACAAAATCAAATCACAGA | 57.592 | 30.769 | 0.00 | 0.00 | 32.06 | 3.41 |
7428 | 14227 | 8.859090 | ACCTATGAACAAAATCAAATCACAGAA | 58.141 | 29.630 | 0.00 | 0.00 | 32.06 | 3.02 |
7429 | 14228 | 9.865321 | CCTATGAACAAAATCAAATCACAGAAT | 57.135 | 29.630 | 0.00 | 0.00 | 32.06 | 2.40 |
7432 | 14231 | 9.767228 | ATGAACAAAATCAAATCACAGAATGAA | 57.233 | 25.926 | 0.00 | 0.00 | 35.17 | 2.57 |
7433 | 14232 | 9.033481 | TGAACAAAATCAAATCACAGAATGAAC | 57.967 | 29.630 | 0.00 | 0.00 | 41.93 | 3.18 |
7434 | 14233 | 9.252962 | GAACAAAATCAAATCACAGAATGAACT | 57.747 | 29.630 | 0.00 | 0.00 | 41.93 | 3.01 |
7435 | 14234 | 8.583810 | ACAAAATCAAATCACAGAATGAACTG | 57.416 | 30.769 | 0.00 | 0.00 | 41.93 | 3.16 |
7436 | 14235 | 8.415553 | ACAAAATCAAATCACAGAATGAACTGA | 58.584 | 29.630 | 0.00 | 0.00 | 41.93 | 3.41 |
7437 | 14236 | 8.697067 | CAAAATCAAATCACAGAATGAACTGAC | 58.303 | 33.333 | 0.00 | 0.00 | 41.93 | 3.51 |
7438 | 14237 | 5.947228 | TCAAATCACAGAATGAACTGACC | 57.053 | 39.130 | 0.00 | 0.00 | 41.93 | 4.02 |
7439 | 14238 | 4.452114 | TCAAATCACAGAATGAACTGACCG | 59.548 | 41.667 | 0.00 | 0.00 | 41.93 | 4.79 |
7440 | 14239 | 3.685139 | ATCACAGAATGAACTGACCGT | 57.315 | 42.857 | 0.00 | 0.00 | 41.93 | 4.83 |
7441 | 14240 | 2.754472 | TCACAGAATGAACTGACCGTG | 58.246 | 47.619 | 0.00 | 0.00 | 39.69 | 4.94 |
7442 | 14241 | 2.364002 | TCACAGAATGAACTGACCGTGA | 59.636 | 45.455 | 0.00 | 0.00 | 39.69 | 4.35 |
7443 | 14242 | 3.130633 | CACAGAATGAACTGACCGTGAA | 58.869 | 45.455 | 0.00 | 0.00 | 39.69 | 3.18 |
7444 | 14243 | 3.559655 | CACAGAATGAACTGACCGTGAAA | 59.440 | 43.478 | 0.00 | 0.00 | 39.69 | 2.69 |
7445 | 14244 | 3.560068 | ACAGAATGAACTGACCGTGAAAC | 59.440 | 43.478 | 0.00 | 0.00 | 39.69 | 2.78 |
7446 | 14245 | 3.809832 | CAGAATGAACTGACCGTGAAACT | 59.190 | 43.478 | 0.00 | 0.00 | 39.69 | 2.66 |
7447 | 14246 | 4.988540 | CAGAATGAACTGACCGTGAAACTA | 59.011 | 41.667 | 0.00 | 0.00 | 39.69 | 2.24 |
7448 | 14247 | 5.639506 | CAGAATGAACTGACCGTGAAACTAT | 59.360 | 40.000 | 0.00 | 0.00 | 39.69 | 2.12 |
7449 | 14248 | 6.147821 | CAGAATGAACTGACCGTGAAACTATT | 59.852 | 38.462 | 0.00 | 0.00 | 39.69 | 1.73 |
7450 | 14249 | 6.710744 | AGAATGAACTGACCGTGAAACTATTT | 59.289 | 34.615 | 0.00 | 0.00 | 31.75 | 1.40 |
7451 | 14250 | 6.877611 | ATGAACTGACCGTGAAACTATTTT | 57.122 | 33.333 | 0.00 | 0.00 | 31.75 | 1.82 |
7452 | 14251 | 7.972832 | ATGAACTGACCGTGAAACTATTTTA | 57.027 | 32.000 | 0.00 | 0.00 | 31.75 | 1.52 |
7453 | 14252 | 7.181143 | TGAACTGACCGTGAAACTATTTTAC | 57.819 | 36.000 | 0.00 | 0.00 | 31.75 | 2.01 |
7455 | 14254 | 4.151157 | ACTGACCGTGAAACTATTTTACGC | 59.849 | 41.667 | 11.74 | 2.47 | 46.98 | 4.42 |
7456 | 14255 | 3.121611 | TGACCGTGAAACTATTTTACGCG | 59.878 | 43.478 | 3.53 | 3.53 | 46.98 | 6.01 |
7457 | 14256 | 2.412770 | ACCGTGAAACTATTTTACGCGG | 59.587 | 45.455 | 12.47 | 18.86 | 46.98 | 6.46 |
7458 | 14257 | 2.424341 | CGTGAAACTATTTTACGCGGC | 58.576 | 47.619 | 12.47 | 0.00 | 43.78 | 6.53 |
7459 | 14258 | 2.093152 | CGTGAAACTATTTTACGCGGCT | 59.907 | 45.455 | 12.47 | 0.00 | 43.78 | 5.52 |
7460 | 14259 | 3.413558 | GTGAAACTATTTTACGCGGCTG | 58.586 | 45.455 | 12.47 | 0.00 | 0.00 | 4.85 |
7461 | 14260 | 3.123959 | GTGAAACTATTTTACGCGGCTGA | 59.876 | 43.478 | 12.47 | 0.00 | 0.00 | 4.26 |
7462 | 14261 | 3.123959 | TGAAACTATTTTACGCGGCTGAC | 59.876 | 43.478 | 12.47 | 0.00 | 0.00 | 3.51 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
120 | 121 | 2.425592 | CTCGTGGGGCAGTTGTGA | 59.574 | 61.111 | 0.00 | 0.00 | 0.00 | 3.58 |
175 | 176 | 7.307989 | GCATGTATAGATCGCAAGTGGTTTAAT | 60.308 | 37.037 | 0.00 | 0.00 | 39.48 | 1.40 |
176 | 177 | 6.018262 | GCATGTATAGATCGCAAGTGGTTTAA | 60.018 | 38.462 | 0.00 | 0.00 | 39.48 | 1.52 |
177 | 178 | 5.465390 | GCATGTATAGATCGCAAGTGGTTTA | 59.535 | 40.000 | 0.00 | 0.00 | 39.48 | 2.01 |
190 | 191 | 6.015918 | ACCTCTTCTGCTAGCATGTATAGAT | 58.984 | 40.000 | 19.72 | 0.00 | 0.00 | 1.98 |
197 | 198 | 3.636300 | ACTAGACCTCTTCTGCTAGCATG | 59.364 | 47.826 | 19.72 | 12.53 | 35.55 | 4.06 |
198 | 199 | 3.888930 | GACTAGACCTCTTCTGCTAGCAT | 59.111 | 47.826 | 19.72 | 0.07 | 35.55 | 3.79 |
199 | 200 | 3.053991 | AGACTAGACCTCTTCTGCTAGCA | 60.054 | 47.826 | 18.22 | 18.22 | 35.55 | 3.49 |
200 | 201 | 3.315191 | CAGACTAGACCTCTTCTGCTAGC | 59.685 | 52.174 | 8.10 | 8.10 | 35.55 | 3.42 |
214 | 218 | 4.702612 | AGCTTTCTTCGTCATCAGACTAGA | 59.297 | 41.667 | 0.00 | 0.00 | 42.73 | 2.43 |
224 | 228 | 3.734231 | CACGACTAAAGCTTTCTTCGTCA | 59.266 | 43.478 | 30.56 | 9.49 | 36.34 | 4.35 |
228 | 232 | 3.741344 | TGCTCACGACTAAAGCTTTCTTC | 59.259 | 43.478 | 16.57 | 12.00 | 36.96 | 2.87 |
229 | 233 | 3.728845 | TGCTCACGACTAAAGCTTTCTT | 58.271 | 40.909 | 16.57 | 3.27 | 36.96 | 2.52 |
231 | 235 | 4.670227 | ATTGCTCACGACTAAAGCTTTC | 57.330 | 40.909 | 16.57 | 0.00 | 36.96 | 2.62 |
232 | 236 | 5.238583 | ACTATTGCTCACGACTAAAGCTTT | 58.761 | 37.500 | 17.30 | 17.30 | 36.96 | 3.51 |
240 | 244 | 1.135373 | CACGGACTATTGCTCACGACT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
244 | 248 | 2.924290 | GACTTCACGGACTATTGCTCAC | 59.076 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
245 | 249 | 2.415491 | CGACTTCACGGACTATTGCTCA | 60.415 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
292 | 307 | 1.629861 | TGGTGAAGATCAGGATGTGCA | 59.370 | 47.619 | 0.00 | 0.00 | 37.40 | 4.57 |
296 | 311 | 2.879026 | CAGCATGGTGAAGATCAGGATG | 59.121 | 50.000 | 20.20 | 0.00 | 37.54 | 3.51 |
302 | 317 | 3.066342 | CCAATGACAGCATGGTGAAGATC | 59.934 | 47.826 | 30.46 | 17.52 | 43.62 | 2.75 |
308 | 323 | 0.454600 | GCTCCAATGACAGCATGGTG | 59.545 | 55.000 | 22.91 | 22.91 | 43.62 | 4.17 |
311 | 326 | 1.022735 | GGAGCTCCAATGACAGCATG | 58.977 | 55.000 | 28.43 | 0.00 | 38.18 | 4.06 |
379 | 394 | 0.111253 | CCTGGCCTTGTTGTCCTTCT | 59.889 | 55.000 | 3.32 | 0.00 | 0.00 | 2.85 |
380 | 395 | 0.110486 | TCCTGGCCTTGTTGTCCTTC | 59.890 | 55.000 | 3.32 | 0.00 | 0.00 | 3.46 |
381 | 396 | 0.111253 | CTCCTGGCCTTGTTGTCCTT | 59.889 | 55.000 | 3.32 | 0.00 | 0.00 | 3.36 |
419 | 434 | 3.112709 | GTGCGACGAGGCTCCAAC | 61.113 | 66.667 | 9.32 | 0.00 | 0.00 | 3.77 |
437 | 452 | 2.501723 | GAGGTAGAGAATGACCCAGCAA | 59.498 | 50.000 | 0.00 | 0.00 | 36.27 | 3.91 |
438 | 453 | 2.111384 | GAGGTAGAGAATGACCCAGCA | 58.889 | 52.381 | 0.00 | 0.00 | 36.27 | 4.41 |
458 | 473 | 6.183360 | CCTTGAGCTTAGAGAGGTAGAGAAAG | 60.183 | 46.154 | 0.00 | 0.00 | 35.91 | 2.62 |
459 | 474 | 5.654650 | CCTTGAGCTTAGAGAGGTAGAGAAA | 59.345 | 44.000 | 0.00 | 0.00 | 35.91 | 2.52 |
460 | 475 | 5.197451 | CCTTGAGCTTAGAGAGGTAGAGAA | 58.803 | 45.833 | 0.00 | 0.00 | 35.91 | 2.87 |
461 | 476 | 4.385865 | CCCTTGAGCTTAGAGAGGTAGAGA | 60.386 | 50.000 | 0.00 | 0.00 | 35.91 | 3.10 |
462 | 477 | 3.888930 | CCCTTGAGCTTAGAGAGGTAGAG | 59.111 | 52.174 | 0.00 | 0.00 | 35.91 | 2.43 |
463 | 478 | 3.269906 | ACCCTTGAGCTTAGAGAGGTAGA | 59.730 | 47.826 | 0.00 | 0.00 | 35.91 | 2.59 |
464 | 479 | 3.383185 | CACCCTTGAGCTTAGAGAGGTAG | 59.617 | 52.174 | 0.00 | 0.00 | 35.91 | 3.18 |
465 | 480 | 3.366396 | CACCCTTGAGCTTAGAGAGGTA | 58.634 | 50.000 | 0.00 | 0.00 | 35.91 | 3.08 |
466 | 481 | 2.183679 | CACCCTTGAGCTTAGAGAGGT | 58.816 | 52.381 | 0.00 | 0.00 | 39.22 | 3.85 |
467 | 482 | 1.484240 | CCACCCTTGAGCTTAGAGAGG | 59.516 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
468 | 483 | 2.430332 | CTCCACCCTTGAGCTTAGAGAG | 59.570 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
469 | 484 | 2.225394 | ACTCCACCCTTGAGCTTAGAGA | 60.225 | 50.000 | 0.00 | 0.00 | 32.98 | 3.10 |
470 | 485 | 2.093764 | CACTCCACCCTTGAGCTTAGAG | 60.094 | 54.545 | 0.00 | 0.00 | 32.98 | 2.43 |
519 | 534 | 6.851222 | ATATGGTCAGAAATTAACAGAGCG | 57.149 | 37.500 | 0.00 | 0.00 | 0.00 | 5.03 |
555 | 570 | 5.717119 | ATATAGGGGCATAATTCCTGACC | 57.283 | 43.478 | 4.52 | 4.52 | 41.46 | 4.02 |
558 | 573 | 9.699410 | TCAAATTATATAGGGGCATAATTCCTG | 57.301 | 33.333 | 0.00 | 0.00 | 36.68 | 3.86 |
592 | 607 | 8.815565 | ACTTTGAGATAGTCTAAGACATCTCA | 57.184 | 34.615 | 19.59 | 19.59 | 44.66 | 3.27 |
633 | 648 | 7.787904 | ACAGTCTACCATAATACAGTCCCATTA | 59.212 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
637 | 652 | 5.363005 | ACACAGTCTACCATAATACAGTCCC | 59.637 | 44.000 | 0.00 | 0.00 | 0.00 | 4.46 |
646 | 661 | 5.362717 | CCATAGTCCACACAGTCTACCATAA | 59.637 | 44.000 | 0.00 | 0.00 | 0.00 | 1.90 |
679 | 694 | 7.847711 | AGACATAGGCACAAATCTAGTCTAT | 57.152 | 36.000 | 0.00 | 0.00 | 32.58 | 1.98 |
861 | 877 | 2.026822 | ACCAGGATCATCAAGTCCACAC | 60.027 | 50.000 | 0.00 | 0.00 | 36.96 | 3.82 |
1071 | 1093 | 2.188947 | AGGGGGAGGGGAGTTACCA | 61.189 | 63.158 | 0.00 | 0.00 | 41.20 | 3.25 |
1097 | 1344 | 2.100631 | CCGTGGAATCTGGCGTGAC | 61.101 | 63.158 | 0.00 | 0.00 | 0.00 | 3.67 |
1193 | 1440 | 0.179032 | ACTTGACGATGTTGGCCACA | 60.179 | 50.000 | 3.88 | 7.85 | 40.71 | 4.17 |
1232 | 1479 | 1.613836 | AGGAACGTACCTTGTCGAGT | 58.386 | 50.000 | 0.00 | 0.00 | 36.86 | 4.18 |
1257 | 1516 | 4.024387 | TCAGTAACAGGATTCGTTTGCAAC | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
1269 | 1528 | 2.571653 | CCCATCCACTTCAGTAACAGGA | 59.428 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1284 | 1557 | 0.689623 | CTGATCCTGGCTACCCATCC | 59.310 | 60.000 | 0.00 | 0.00 | 41.21 | 3.51 |
1319 | 2604 | 6.069440 | TCTCCTCAAAACTAATGTGGATCCAT | 60.069 | 38.462 | 19.62 | 4.39 | 39.12 | 3.41 |
1330 | 2615 | 2.979678 | AGGGCTGTCTCCTCAAAACTAA | 59.020 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
1341 | 2626 | 2.613223 | GGACTGTAACAAGGGCTGTCTC | 60.613 | 54.545 | 0.00 | 0.00 | 37.23 | 3.36 |
1343 | 2629 | 1.071699 | TGGACTGTAACAAGGGCTGTC | 59.928 | 52.381 | 0.00 | 0.00 | 37.23 | 3.51 |
1495 | 2791 | 3.807622 | TCAAACAAAACGAGGTCAGCTAG | 59.192 | 43.478 | 0.00 | 0.00 | 0.00 | 3.42 |
1676 | 2979 | 7.875554 | AGAGAAACTCATAGACAAGGAAAACTC | 59.124 | 37.037 | 0.00 | 0.00 | 32.06 | 3.01 |
1683 | 2986 | 4.869297 | CAGCAGAGAAACTCATAGACAAGG | 59.131 | 45.833 | 0.00 | 0.00 | 32.06 | 3.61 |
1738 | 3049 | 4.323028 | CCTCACAAGTTCATTGGCTCTCTA | 60.323 | 45.833 | 0.00 | 0.00 | 43.68 | 2.43 |
1882 | 3218 | 5.951747 | AGCTGGCAGAATATGAAGGTAAAAA | 59.048 | 36.000 | 20.86 | 0.00 | 0.00 | 1.94 |
2237 | 3585 | 4.616802 | CCAAAATCAATACGTGACAACTGC | 59.383 | 41.667 | 0.00 | 0.00 | 39.72 | 4.40 |
2247 | 3595 | 2.911819 | ACGCCACCAAAATCAATACG | 57.088 | 45.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2455 | 3843 | 6.430000 | GCTTCTACAACCTAAGAAACCATTGA | 59.570 | 38.462 | 0.00 | 0.00 | 31.61 | 2.57 |
2718 | 4246 | 5.009854 | AGCAAAACAATAGCACAAGTTGT | 57.990 | 34.783 | 1.64 | 1.64 | 37.66 | 3.32 |
2720 | 4248 | 7.307337 | GCATAAAGCAAAACAATAGCACAAGTT | 60.307 | 33.333 | 0.00 | 0.00 | 44.79 | 2.66 |
2755 | 4289 | 6.713903 | ATGTCTAATACATCCAGCAGGAAATG | 59.286 | 38.462 | 0.32 | 0.00 | 46.15 | 2.32 |
2833 | 4368 | 5.178096 | TGAATATCAGGAAAAGGACAGCA | 57.822 | 39.130 | 0.00 | 0.00 | 0.00 | 4.41 |
2881 | 4420 | 9.555727 | GGCATTACAGTATTAATACAGGAGAAA | 57.444 | 33.333 | 24.05 | 11.89 | 35.74 | 2.52 |
2919 | 4463 | 4.411256 | AATGAATCAAACATCATGGCCC | 57.589 | 40.909 | 0.00 | 0.00 | 36.44 | 5.80 |
2956 | 4617 | 4.734398 | AAGTGGCACAAAGAACAATTCA | 57.266 | 36.364 | 21.41 | 0.00 | 44.16 | 2.57 |
3142 | 4803 | 6.484643 | TCTTCTGAAGGTTGAAATCAAGACAG | 59.515 | 38.462 | 16.83 | 4.78 | 36.39 | 3.51 |
3168 | 4829 | 4.412796 | TGAACACCCATTTGCATTTTCA | 57.587 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
3199 | 4860 | 2.170187 | CTCCAGTTCCCTTGGATCAGAG | 59.830 | 54.545 | 0.00 | 0.00 | 43.46 | 3.35 |
3299 | 4978 | 5.055144 | TGAGAGAGCATATTCATTGCAGAC | 58.945 | 41.667 | 0.00 | 0.00 | 42.62 | 3.51 |
3350 | 5034 | 3.731867 | GCAAAAGGCATGTAGAACCATCG | 60.732 | 47.826 | 0.00 | 0.00 | 43.97 | 3.84 |
3423 | 5130 | 5.471456 | ACGTCAGATTCTCTGCAAAAAGAAT | 59.529 | 36.000 | 15.00 | 15.00 | 43.95 | 2.40 |
3446 | 5155 | 3.508762 | TCTCAATTCGCTCCTTCGTTAC | 58.491 | 45.455 | 0.00 | 0.00 | 0.00 | 2.50 |
3543 | 5252 | 7.757941 | AATTATCTAACTCTACCCGAGGTAC | 57.242 | 40.000 | 0.00 | 0.00 | 44.33 | 3.34 |
3803 | 5541 | 7.054124 | AGGACAAAAACTTCAGATTGAGTACA | 58.946 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
3888 | 5653 | 6.119144 | GTGATATCCACATACACAACAACC | 57.881 | 41.667 | 0.00 | 0.00 | 45.03 | 3.77 |
3921 | 5687 | 7.663905 | ACACCAATACAGCAGATTTAGTTACAA | 59.336 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
4134 | 5909 | 3.564644 | CAGGCAAGTCATGGATGAGATTC | 59.435 | 47.826 | 0.00 | 0.00 | 37.51 | 2.52 |
4181 | 5985 | 6.145535 | AGAATCTTTTAAACAGAAGCAAGCG | 58.854 | 36.000 | 0.00 | 0.00 | 0.00 | 4.68 |
4269 | 6105 | 2.174319 | GGTAAGCTGCTACGCTGGC | 61.174 | 63.158 | 0.90 | 0.00 | 40.79 | 4.85 |
4335 | 6207 | 9.884465 | GCATTATTAGTTAGGAACATCAATGAC | 57.116 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
4400 | 6272 | 7.769044 | TGCAGATTCTTGTTACTTTAGGATACC | 59.231 | 37.037 | 0.00 | 0.00 | 37.17 | 2.73 |
4612 | 6533 | 4.301628 | AGCTTTCAAACTAATGCTGTTGC | 58.698 | 39.130 | 0.00 | 0.00 | 38.15 | 4.17 |
4640 | 6561 | 6.760298 | TGCATAAAAGAAAAGCAATTGTGACA | 59.240 | 30.769 | 7.40 | 0.00 | 31.42 | 3.58 |
4641 | 6562 | 7.176285 | TGCATAAAAGAAAAGCAATTGTGAC | 57.824 | 32.000 | 7.40 | 0.00 | 31.42 | 3.67 |
4978 | 6917 | 5.163343 | GGTATAGTATGGACCAGCAACAAGA | 60.163 | 44.000 | 0.00 | 0.00 | 33.16 | 3.02 |
5017 | 6985 | 3.817709 | TTGAAAACAAGGCCTCAAAGG | 57.182 | 42.857 | 5.23 | 0.00 | 38.80 | 3.11 |
5074 | 7043 | 8.437575 | ACTTTTAACTGTTCCTATTCTCCTCAA | 58.562 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
5076 | 7045 | 8.095169 | TGACTTTTAACTGTTCCTATTCTCCTC | 58.905 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
5171 | 7167 | 5.119279 | CGACCAGGAAAGAATATCTAATGCG | 59.881 | 44.000 | 0.00 | 0.00 | 0.00 | 4.73 |
5181 | 7179 | 3.721087 | ATTCACCGACCAGGAAAGAAT | 57.279 | 42.857 | 0.00 | 0.00 | 45.00 | 2.40 |
5265 | 7315 | 5.047590 | CCTGCATGCATGACCAATATACATT | 60.048 | 40.000 | 30.64 | 0.00 | 0.00 | 2.71 |
5278 | 7328 | 1.100510 | AGCAACTACCTGCATGCATG | 58.899 | 50.000 | 22.97 | 22.70 | 45.18 | 4.06 |
5279 | 7329 | 1.100510 | CAGCAACTACCTGCATGCAT | 58.899 | 50.000 | 22.97 | 10.26 | 45.18 | 3.96 |
5280 | 7330 | 0.961857 | CCAGCAACTACCTGCATGCA | 60.962 | 55.000 | 21.29 | 21.29 | 45.18 | 3.96 |
5281 | 7331 | 0.962356 | ACCAGCAACTACCTGCATGC | 60.962 | 55.000 | 11.82 | 11.82 | 45.18 | 4.06 |
5348 | 7398 | 1.909302 | TCCCTGGATCCAAGAGTTGTC | 59.091 | 52.381 | 17.00 | 0.00 | 0.00 | 3.18 |
5438 | 7490 | 5.409826 | GGTTCAGTATGCAAGTATCATAGGC | 59.590 | 44.000 | 0.00 | 0.00 | 34.76 | 3.93 |
5488 | 7543 | 1.583054 | GAGGACCTGTCAACACACAC | 58.417 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
5495 | 7550 | 1.334160 | TAACAGCGAGGACCTGTCAA | 58.666 | 50.000 | 0.00 | 0.00 | 42.37 | 3.18 |
5635 | 7690 | 4.429108 | GAGCCATAATCCGCTTAGATCTC | 58.571 | 47.826 | 0.00 | 0.00 | 34.84 | 2.75 |
5669 | 7724 | 5.408909 | GTGAAACTAGTCTTCAAAGGCCTAC | 59.591 | 44.000 | 5.16 | 0.00 | 34.68 | 3.18 |
5678 | 7733 | 3.314693 | AGGGTGGTGAAACTAGTCTTCA | 58.685 | 45.455 | 13.22 | 13.22 | 36.74 | 3.02 |
5817 | 9056 | 7.281100 | GGAAACCAAGGAGATATTGTCTTACAG | 59.719 | 40.741 | 0.00 | 0.00 | 37.29 | 2.74 |
5819 | 9058 | 7.339482 | AGGAAACCAAGGAGATATTGTCTTAC | 58.661 | 38.462 | 0.00 | 0.00 | 37.29 | 2.34 |
5823 | 9062 | 6.539103 | GTGTAGGAAACCAAGGAGATATTGTC | 59.461 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
5922 | 9165 | 4.624452 | GTGCACTTACCTAACGACTTAAGG | 59.376 | 45.833 | 10.32 | 0.00 | 0.00 | 2.69 |
6035 | 9281 | 1.192146 | TGGGACACAGGGAGTAGCAC | 61.192 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
6047 | 9293 | 7.923414 | AGTTGAGATAGTTATTTTGGGACAC | 57.077 | 36.000 | 0.00 | 0.00 | 39.29 | 3.67 |
6114 | 9360 | 4.641868 | AGTACTCCCTCCATCCCAAATAA | 58.358 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
6115 | 9361 | 4.295905 | AGTACTCCCTCCATCCCAAATA | 57.704 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
6161 | 9409 | 6.389830 | ACAAAGTTGAACATGTGCAATAGA | 57.610 | 33.333 | 22.15 | 0.00 | 0.00 | 1.98 |
6165 | 9413 | 5.233225 | TCAAACAAAGTTGAACATGTGCAA | 58.767 | 33.333 | 15.66 | 15.66 | 34.59 | 4.08 |
6362 | 10059 | 1.862827 | CAAACTGCAGAGCAAAAAGGC | 59.137 | 47.619 | 23.35 | 0.00 | 38.41 | 4.35 |
6458 | 10159 | 2.421775 | CGTAAAATGGCATGTGGCTACA | 59.578 | 45.455 | 4.99 | 4.99 | 44.01 | 2.74 |
6488 | 10189 | 2.883574 | CCATGGCATAACAAACAGCAG | 58.116 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
6527 | 10230 | 4.082026 | GGAAAATCACAAGCAGCAACCTAT | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
6627 | 10336 | 7.302948 | AGTCCTACTACCCACACATAATGATA | 58.697 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
6815 | 10553 | 5.105063 | GGCTAAACATCCTTTTCATCAAGC | 58.895 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
6929 | 10673 | 8.706322 | AAAACAAACCTACAGAATCTACCAAT | 57.294 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
6937 | 10681 | 8.664669 | ATTATGGGAAAACAAACCTACAGAAT | 57.335 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
7105 | 10955 | 5.606348 | AAAGAAACAAGGTTGCCAACATA | 57.394 | 34.783 | 10.18 | 0.00 | 0.00 | 2.29 |
7136 | 10986 | 3.435105 | AAGAAACGCAAACATGCTCAA | 57.565 | 38.095 | 0.00 | 0.00 | 0.00 | 3.02 |
7149 | 10999 | 3.073144 | TCCCGCAAAAGAAAAGAAACG | 57.927 | 42.857 | 0.00 | 0.00 | 0.00 | 3.60 |
7175 | 11026 | 2.096218 | GCACTTCTCGGTGAAACATGTC | 60.096 | 50.000 | 0.00 | 0.00 | 39.98 | 3.06 |
7187 | 11038 | 1.363744 | GTTCAGGGATGCACTTCTCG | 58.636 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
7283 | 14082 | 2.225963 | CCCACGTTCGGCTATACTCTAG | 59.774 | 54.545 | 0.00 | 0.00 | 0.00 | 2.43 |
7284 | 14083 | 2.158769 | TCCCACGTTCGGCTATACTCTA | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
7285 | 14084 | 1.030457 | CCCACGTTCGGCTATACTCT | 58.970 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
7302 | 14101 | 1.594331 | ACGTTTCAGTTTGCTCTCCC | 58.406 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
7331 | 14130 | 3.445805 | GGTGTCAAGTTTGGTCCTTTGAA | 59.554 | 43.478 | 0.00 | 0.00 | 31.98 | 2.69 |
7346 | 14145 | 3.274095 | TGTGTCAGATTGTGGTGTCAA | 57.726 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
7378 | 14177 | 4.838665 | AATTTATCAATTTTGCCGTGCG | 57.161 | 36.364 | 0.00 | 0.00 | 0.00 | 5.34 |
7381 | 14180 | 6.463360 | AGGTCAAATTTATCAATTTTGCCGT | 58.537 | 32.000 | 0.00 | 0.00 | 40.09 | 5.68 |
7382 | 14181 | 6.966435 | AGGTCAAATTTATCAATTTTGCCG | 57.034 | 33.333 | 0.00 | 0.00 | 40.09 | 5.69 |
7383 | 14182 | 9.598517 | TCATAGGTCAAATTTATCAATTTTGCC | 57.401 | 29.630 | 0.00 | 1.90 | 40.09 | 4.52 |
7398 | 14197 | 9.474920 | GTGATTTGATTTTGTTCATAGGTCAAA | 57.525 | 29.630 | 0.00 | 0.00 | 38.14 | 2.69 |
7399 | 14198 | 8.637099 | TGTGATTTGATTTTGTTCATAGGTCAA | 58.363 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
7400 | 14199 | 8.175925 | TGTGATTTGATTTTGTTCATAGGTCA | 57.824 | 30.769 | 0.00 | 0.00 | 0.00 | 4.02 |
7401 | 14200 | 8.514594 | TCTGTGATTTGATTTTGTTCATAGGTC | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
7402 | 14201 | 8.408043 | TCTGTGATTTGATTTTGTTCATAGGT | 57.592 | 30.769 | 0.00 | 0.00 | 0.00 | 3.08 |
7403 | 14202 | 9.865321 | ATTCTGTGATTTGATTTTGTTCATAGG | 57.135 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
7406 | 14205 | 9.767228 | TTCATTCTGTGATTTGATTTTGTTCAT | 57.233 | 25.926 | 0.00 | 0.00 | 36.54 | 2.57 |
7407 | 14206 | 9.033481 | GTTCATTCTGTGATTTGATTTTGTTCA | 57.967 | 29.630 | 0.00 | 0.00 | 36.54 | 3.18 |
7408 | 14207 | 9.252962 | AGTTCATTCTGTGATTTGATTTTGTTC | 57.747 | 29.630 | 0.00 | 0.00 | 36.54 | 3.18 |
7409 | 14208 | 9.037737 | CAGTTCATTCTGTGATTTGATTTTGTT | 57.962 | 29.630 | 0.00 | 0.00 | 36.54 | 2.83 |
7410 | 14209 | 8.415553 | TCAGTTCATTCTGTGATTTGATTTTGT | 58.584 | 29.630 | 0.00 | 0.00 | 36.54 | 2.83 |
7411 | 14210 | 8.697067 | GTCAGTTCATTCTGTGATTTGATTTTG | 58.303 | 33.333 | 0.00 | 0.00 | 36.54 | 2.44 |
7412 | 14211 | 7.869429 | GGTCAGTTCATTCTGTGATTTGATTTT | 59.131 | 33.333 | 0.00 | 0.00 | 36.54 | 1.82 |
7413 | 14212 | 7.373493 | GGTCAGTTCATTCTGTGATTTGATTT | 58.627 | 34.615 | 0.00 | 0.00 | 36.54 | 2.17 |
7414 | 14213 | 6.348786 | CGGTCAGTTCATTCTGTGATTTGATT | 60.349 | 38.462 | 0.00 | 0.00 | 36.54 | 2.57 |
7415 | 14214 | 5.122869 | CGGTCAGTTCATTCTGTGATTTGAT | 59.877 | 40.000 | 0.00 | 0.00 | 36.54 | 2.57 |
7416 | 14215 | 4.452114 | CGGTCAGTTCATTCTGTGATTTGA | 59.548 | 41.667 | 0.00 | 0.00 | 36.54 | 2.69 |
7417 | 14216 | 4.214119 | ACGGTCAGTTCATTCTGTGATTTG | 59.786 | 41.667 | 0.00 | 0.00 | 36.54 | 2.32 |
7418 | 14217 | 4.214119 | CACGGTCAGTTCATTCTGTGATTT | 59.786 | 41.667 | 0.00 | 0.00 | 38.86 | 2.17 |
7419 | 14218 | 3.748048 | CACGGTCAGTTCATTCTGTGATT | 59.252 | 43.478 | 0.00 | 0.00 | 38.86 | 2.57 |
7420 | 14219 | 3.006859 | TCACGGTCAGTTCATTCTGTGAT | 59.993 | 43.478 | 0.00 | 0.00 | 40.00 | 3.06 |
7421 | 14220 | 2.364002 | TCACGGTCAGTTCATTCTGTGA | 59.636 | 45.455 | 0.00 | 0.00 | 41.77 | 3.58 |
7422 | 14221 | 2.754472 | TCACGGTCAGTTCATTCTGTG | 58.246 | 47.619 | 0.00 | 0.00 | 38.19 | 3.66 |
7423 | 14222 | 3.469008 | TTCACGGTCAGTTCATTCTGT | 57.531 | 42.857 | 0.00 | 0.00 | 36.85 | 3.41 |
7424 | 14223 | 3.809832 | AGTTTCACGGTCAGTTCATTCTG | 59.190 | 43.478 | 0.00 | 0.00 | 36.85 | 3.02 |
7425 | 14224 | 4.073293 | AGTTTCACGGTCAGTTCATTCT | 57.927 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
7426 | 14225 | 6.481954 | AATAGTTTCACGGTCAGTTCATTC | 57.518 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
7427 | 14226 | 6.877611 | AAATAGTTTCACGGTCAGTTCATT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
7428 | 14227 | 6.877611 | AAAATAGTTTCACGGTCAGTTCAT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
7429 | 14228 | 6.074195 | CGTAAAATAGTTTCACGGTCAGTTCA | 60.074 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
7430 | 14229 | 6.294363 | CGTAAAATAGTTTCACGGTCAGTTC | 58.706 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
7431 | 14230 | 5.333568 | GCGTAAAATAGTTTCACGGTCAGTT | 60.334 | 40.000 | 14.63 | 0.00 | 33.39 | 3.16 |
7432 | 14231 | 4.151157 | GCGTAAAATAGTTTCACGGTCAGT | 59.849 | 41.667 | 14.63 | 0.00 | 33.39 | 3.41 |
7433 | 14232 | 4.634991 | GCGTAAAATAGTTTCACGGTCAG | 58.365 | 43.478 | 14.63 | 0.00 | 33.39 | 3.51 |
7434 | 14233 | 3.121611 | CGCGTAAAATAGTTTCACGGTCA | 59.878 | 43.478 | 0.00 | 0.00 | 33.39 | 4.02 |
7435 | 14234 | 3.482436 | CCGCGTAAAATAGTTTCACGGTC | 60.482 | 47.826 | 4.92 | 2.62 | 34.41 | 4.79 |
7436 | 14235 | 2.412770 | CCGCGTAAAATAGTTTCACGGT | 59.587 | 45.455 | 4.92 | 0.00 | 34.41 | 4.83 |
7437 | 14236 | 2.785342 | GCCGCGTAAAATAGTTTCACGG | 60.785 | 50.000 | 15.43 | 15.43 | 38.56 | 4.94 |
7438 | 14237 | 2.093152 | AGCCGCGTAAAATAGTTTCACG | 59.907 | 45.455 | 4.92 | 10.93 | 35.78 | 4.35 |
7439 | 14238 | 3.123959 | TCAGCCGCGTAAAATAGTTTCAC | 59.876 | 43.478 | 4.92 | 0.00 | 0.00 | 3.18 |
7440 | 14239 | 3.123959 | GTCAGCCGCGTAAAATAGTTTCA | 59.876 | 43.478 | 4.92 | 0.00 | 0.00 | 2.69 |
7441 | 14240 | 3.667050 | GTCAGCCGCGTAAAATAGTTTC | 58.333 | 45.455 | 4.92 | 0.00 | 0.00 | 2.78 |
7442 | 14241 | 3.734776 | GTCAGCCGCGTAAAATAGTTT | 57.265 | 42.857 | 4.92 | 0.00 | 0.00 | 2.66 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.