Multiple sequence alignment - TraesCS7A01G216700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G216700 chr7A 100.000 5453 0 0 1 5453 183484409 183478957 0.000000e+00 10070.0
1 TraesCS7A01G216700 chr7A 95.091 2098 94 3 2621 4718 183654350 183652262 0.000000e+00 3295.0
2 TraesCS7A01G216700 chr7A 92.439 1468 102 5 1129 2596 183308990 183307532 0.000000e+00 2087.0
3 TraesCS7A01G216700 chr7A 94.705 1322 68 2 2621 3941 183307252 183305932 0.000000e+00 2052.0
4 TraesCS7A01G216700 chr7A 92.857 1274 73 6 1161 2431 182856895 182855637 0.000000e+00 1832.0
5 TraesCS7A01G216700 chr7A 89.627 1446 107 22 1161 2598 183655969 183654559 0.000000e+00 1799.0
6 TraesCS7A01G216700 chr7A 94.810 1079 54 2 3917 4994 183305908 183304831 0.000000e+00 1681.0
7 TraesCS7A01G216700 chr7A 95.753 259 11 0 2868 3126 182855638 182855380 8.450000e-113 418.0
8 TraesCS7A01G216700 chr7A 99.005 201 2 0 5253 5453 308215031 308214831 1.440000e-95 361.0
9 TraesCS7A01G216700 chr7A 86.120 317 28 10 694 1007 183656303 183656000 1.460000e-85 327.0
10 TraesCS7A01G216700 chr7A 81.620 321 57 2 4011 4330 183641237 183640918 1.160000e-66 265.0
11 TraesCS7A01G216700 chr7A 83.495 206 19 9 88 291 183656885 183656693 1.560000e-40 178.0
12 TraesCS7A01G216700 chr7A 90.977 133 7 3 4859 4991 183652183 183652056 2.020000e-39 174.0
13 TraesCS7A01G216700 chr7A 84.571 175 15 6 430 603 183656530 183656367 4.370000e-36 163.0
14 TraesCS7A01G216700 chr7A 83.429 175 20 6 430 602 183309563 183309396 2.630000e-33 154.0
15 TraesCS7A01G216700 chr7D 96.941 5002 108 14 1 4991 178941827 178936860 0.000000e+00 8347.0
16 TraesCS7A01G216700 chr7D 92.721 1470 96 6 1129 2596 178861918 178860458 0.000000e+00 2111.0
17 TraesCS7A01G216700 chr7D 94.937 1264 51 3 2678 3941 178860205 178858955 0.000000e+00 1967.0
18 TraesCS7A01G216700 chr7D 90.772 1463 120 13 1144 2598 179123587 179122132 0.000000e+00 1940.0
19 TraesCS7A01G216700 chr7D 94.952 733 37 0 3917 4649 178858931 178858199 0.000000e+00 1149.0
20 TraesCS7A01G216700 chr7D 76.797 1461 306 30 2872 4314 178990013 178988568 0.000000e+00 789.0
21 TraesCS7A01G216700 chr7D 76.083 1547 272 60 694 2218 178992299 178990829 0.000000e+00 717.0
22 TraesCS7A01G216700 chr7D 91.228 228 18 2 5027 5252 92255041 92255268 5.300000e-80 309.0
23 TraesCS7A01G216700 chr7D 92.908 141 10 0 2621 2761 179121923 179121783 7.160000e-49 206.0
24 TraesCS7A01G216700 chr7D 79.635 329 27 12 1 327 178862798 178862508 3.330000e-47 200.0
25 TraesCS7A01G216700 chr7D 84.659 176 13 9 430 603 179124118 179123955 4.370000e-36 163.0
26 TraesCS7A01G216700 chr7D 82.286 175 22 7 430 602 178862491 178862324 5.690000e-30 143.0
27 TraesCS7A01G216700 chr7D 90.291 103 6 4 88 188 179124419 179124319 1.230000e-26 132.0
28 TraesCS7A01G216700 chr7D 95.745 47 1 1 4676 4722 178858192 178858147 2.110000e-09 75.0
29 TraesCS7A01G216700 chr7B 97.025 4302 115 8 694 4993 144813862 144809572 0.000000e+00 7223.0
30 TraesCS7A01G216700 chr7B 93.875 2106 109 8 2621 4722 145053557 145051468 0.000000e+00 3157.0
31 TraesCS7A01G216700 chr7B 87.910 1919 177 29 694 2598 145055643 145053766 0.000000e+00 2207.0
32 TraesCS7A01G216700 chr7B 92.930 1471 96 4 1129 2598 144736695 144735232 0.000000e+00 2134.0
33 TraesCS7A01G216700 chr7B 92.879 1320 91 1 2625 3941 144734956 144733637 0.000000e+00 1914.0
34 TraesCS7A01G216700 chr7B 93.869 734 39 2 3916 4649 144733614 144732887 0.000000e+00 1101.0
35 TraesCS7A01G216700 chr7B 94.645 691 34 3 1 689 144814520 144813831 0.000000e+00 1068.0
36 TraesCS7A01G216700 chr7B 77.080 1466 293 35 2872 4314 145028609 145027164 0.000000e+00 806.0
37 TraesCS7A01G216700 chr7B 76.338 1551 267 65 694 2218 145030901 145029425 0.000000e+00 739.0
38 TraesCS7A01G216700 chr7B 81.148 244 28 10 88 329 145056109 145055882 4.340000e-41 180.0
39 TraesCS7A01G216700 chr7B 91.667 132 6 2 4860 4991 145051390 145051264 1.560000e-40 178.0
40 TraesCS7A01G216700 chr7B 84.483 174 14 6 430 603 145055867 145055707 5.650000e-35 159.0
41 TraesCS7A01G216700 chr7B 82.759 174 22 6 430 602 144737254 144737088 1.220000e-31 148.0
42 TraesCS7A01G216700 chr7B 94.340 53 2 1 4670 4722 144732886 144732835 4.530000e-11 80.5
43 TraesCS7A01G216700 chr7B 97.436 39 1 0 4992 5030 144809546 144809508 3.530000e-07 67.6
44 TraesCS7A01G216700 chr4A 99.010 202 2 0 5252 5453 564794863 564795064 4.010000e-96 363.0
45 TraesCS7A01G216700 chr4A 98.515 202 3 0 5252 5453 679761373 679761172 1.870000e-94 357.0
46 TraesCS7A01G216700 chr4A 87.660 235 24 5 5021 5252 724233717 724233485 9.000000e-68 268.0
47 TraesCS7A01G216700 chrUn 99.005 201 2 0 5253 5453 161348960 161348760 1.440000e-95 361.0
48 TraesCS7A01G216700 chr3A 99.005 201 2 0 5253 5453 113387662 113387862 1.440000e-95 361.0
49 TraesCS7A01G216700 chr1A 98.515 202 3 0 5252 5453 121401372 121401171 1.870000e-94 357.0
50 TraesCS7A01G216700 chr1A 98.507 201 3 0 5253 5453 442711875 442711675 6.720000e-94 355.0
51 TraesCS7A01G216700 chr1A 98.507 201 3 0 5253 5453 448943457 448943657 6.720000e-94 355.0
52 TraesCS7A01G216700 chr2A 98.030 203 1 3 5251 5453 192028384 192028185 3.130000e-92 350.0
53 TraesCS7A01G216700 chr2A 87.838 222 23 3 5030 5250 753049364 753049146 1.950000e-64 257.0
54 TraesCS7A01G216700 chr3B 92.889 225 13 2 5030 5252 434061910 434062133 1.890000e-84 324.0
55 TraesCS7A01G216700 chr5B 91.284 218 18 1 5030 5246 282083087 282083304 4.130000e-76 296.0
56 TraesCS7A01G216700 chr5B 89.640 222 20 3 5032 5251 527186665 527186885 4.160000e-71 279.0
57 TraesCS7A01G216700 chr5A 89.610 231 21 3 5024 5251 548730375 548730605 1.920000e-74 291.0
58 TraesCS7A01G216700 chr6B 89.238 223 23 1 5030 5251 353178368 353178590 1.500000e-70 278.0
59 TraesCS7A01G216700 chr1B 88.444 225 21 5 5024 5246 629836986 629837207 3.240000e-67 267.0
60 TraesCS7A01G216700 chr1B 90.196 102 7 3 336 436 70183123 70183024 4.430000e-26 130.0
61 TraesCS7A01G216700 chr4B 84.314 102 15 1 326 426 112037255 112037356 1.250000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G216700 chr7A 183478957 183484409 5452 True 10070.000000 10070 100.000000 1 5453 1 chr7A.!!$R1 5452
1 TraesCS7A01G216700 chr7A 183304831 183309563 4732 True 1493.500000 2087 91.345750 430 4994 4 chr7A.!!$R5 4564
2 TraesCS7A01G216700 chr7A 182855380 182856895 1515 True 1125.000000 1832 94.305000 1161 3126 2 chr7A.!!$R4 1965
3 TraesCS7A01G216700 chr7A 183652056 183656885 4829 True 989.333333 3295 88.313500 88 4991 6 chr7A.!!$R6 4903
4 TraesCS7A01G216700 chr7D 178936860 178941827 4967 True 8347.000000 8347 96.941000 1 4991 1 chr7D.!!$R1 4990
5 TraesCS7A01G216700 chr7D 178858147 178862798 4651 True 940.833333 2111 90.046000 1 4722 6 chr7D.!!$R2 4721
6 TraesCS7A01G216700 chr7D 178988568 178992299 3731 True 753.000000 789 76.440000 694 4314 2 chr7D.!!$R3 3620
7 TraesCS7A01G216700 chr7D 179121783 179124419 2636 True 610.250000 1940 89.657500 88 2761 4 chr7D.!!$R4 2673
8 TraesCS7A01G216700 chr7B 144809508 144814520 5012 True 2786.200000 7223 96.368667 1 5030 3 chr7B.!!$R2 5029
9 TraesCS7A01G216700 chr7B 145051264 145056109 4845 True 1176.200000 3157 87.816600 88 4991 5 chr7B.!!$R4 4903
10 TraesCS7A01G216700 chr7B 144732835 144737254 4419 True 1075.500000 2134 91.355400 430 4722 5 chr7B.!!$R1 4292
11 TraesCS7A01G216700 chr7B 145027164 145030901 3737 True 772.500000 806 76.709000 694 4314 2 chr7B.!!$R3 3620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 762 0.531090 TCGTCTTGAACACCAACCCG 60.531 55.000 0.00 0.00 0.00 5.28 F
1411 1686 0.315886 CTGCAATGCAACAGCCTTCA 59.684 50.000 9.92 0.00 38.41 3.02 F
1521 1796 1.289160 TGGACCTATTCAGCCTGCTT 58.711 50.000 0.00 0.00 0.00 3.91 F
2229 2513 1.780503 AGGTCAAAACAAGCAGCCTT 58.219 45.000 0.00 0.00 0.00 4.35 F
3135 3773 2.127534 GTTACCAAACGGCGTGCG 60.128 61.111 15.70 7.76 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 2649 0.472471 TCTTGTGGTTCAGGGGTGTC 59.528 55.000 0.00 0.00 0.00 3.67 R
2367 2651 0.537371 GGTCTTGTGGTTCAGGGGTG 60.537 60.000 0.00 0.00 0.00 4.61 R
3453 4094 2.076863 GCTTGGTATGTGACAGTCACC 58.923 52.381 27.51 14.84 46.40 4.02 R
3823 4476 1.350684 TCTTCCTAGTGTGCCATGCAA 59.649 47.619 0.00 0.00 41.47 4.08 R
5077 5839 0.110554 GCGTGCGTTTGTATCGGTTT 60.111 50.000 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
450 628 7.044798 GGAGTAGAACTCTATGCTCAAACATT 58.955 38.462 6.99 0.00 44.46 2.71
456 634 9.236006 AGAACTCTATGCTCAAACATTAACATT 57.764 29.630 0.00 0.00 0.00 2.71
552 731 6.779860 TCCCTTTAAGACTTTAATCAGCTGT 58.220 36.000 14.67 0.00 0.00 4.40
582 762 0.531090 TCGTCTTGAACACCAACCCG 60.531 55.000 0.00 0.00 0.00 5.28
647 843 9.138596 ACCTTTCTGGAGAAGTCTATATACTTC 57.861 37.037 18.62 18.62 45.47 3.01
797 1006 4.800471 GCCTTTAACATGCTATCTTTGTGC 59.200 41.667 0.00 0.00 0.00 4.57
911 1127 8.654230 TTTGAATCCTTCAGATATCTTCTTCG 57.346 34.615 1.33 0.00 41.38 3.79
1411 1686 0.315886 CTGCAATGCAACAGCCTTCA 59.684 50.000 9.92 0.00 38.41 3.02
1521 1796 1.289160 TGGACCTATTCAGCCTGCTT 58.711 50.000 0.00 0.00 0.00 3.91
1921 2205 4.154942 TGTTCTCCGGAGTAACTACCTTT 58.845 43.478 30.17 0.00 0.00 3.11
2229 2513 1.780503 AGGTCAAAACAAGCAGCCTT 58.219 45.000 0.00 0.00 0.00 4.35
2365 2649 4.134379 ACTGATACACCTGCAGAAGATG 57.866 45.455 17.39 10.30 33.94 2.90
2367 2651 4.118410 CTGATACACCTGCAGAAGATGAC 58.882 47.826 17.39 1.63 0.00 3.06
3135 3773 2.127534 GTTACCAAACGGCGTGCG 60.128 61.111 15.70 7.76 0.00 5.34
3261 3899 5.789521 TGCAGTGTACTTGCTTATGTTCTA 58.210 37.500 19.04 0.00 0.00 2.10
3823 4476 3.735237 TTCAAGTTCTGCTCTCTTCGT 57.265 42.857 0.00 0.00 0.00 3.85
4317 5021 5.661458 GTGTATGTCTATGCACTAGTTGGT 58.339 41.667 0.00 0.00 43.81 3.67
4358 5062 5.709631 TGCTGCTCCTAATTATTGTGTCAAA 59.290 36.000 0.00 0.00 0.00 2.69
4384 5088 3.781079 TTGCAAAATATCGGAAGGCAG 57.219 42.857 0.00 0.00 0.00 4.85
4539 5243 2.032799 TCTGCGAACAATTTGTGTGTCC 59.967 45.455 2.13 0.00 40.60 4.02
4578 5282 7.194607 TCTTCATGTTCAGATTTGACTTGAC 57.805 36.000 0.00 0.00 31.71 3.18
4662 5367 4.371786 CTCGAGCCTAAAACTGCATATCA 58.628 43.478 0.00 0.00 0.00 2.15
4720 5425 8.180267 GGCAATGAGGATTATCTTCATTATTCG 58.820 37.037 25.10 16.75 46.92 3.34
4734 5439 5.211454 TCATTATTCGTTTGTTGCACACTG 58.789 37.500 0.00 0.00 0.00 3.66
4744 5449 5.527511 TTGTTGCACACTGAATTTTTGTG 57.472 34.783 9.52 9.52 42.96 3.33
4757 5462 6.205784 TGAATTTTTGTGTTCGAGATTGGTC 58.794 36.000 0.00 0.00 0.00 4.02
4835 5549 5.644644 AGAATTTTGAGCTTTATTCCGCTG 58.355 37.500 0.00 0.00 36.45 5.18
4850 5564 1.003718 GCTGCGGAAGTTGGTACCT 60.004 57.895 14.36 0.00 0.00 3.08
4942 5677 2.495866 CATCCATTTGTGGGGCGC 59.504 61.111 0.00 0.00 0.00 6.53
4996 5758 2.554032 CCAGGCTTGTTTTGTACTCTGG 59.446 50.000 0.00 0.00 0.00 3.86
5030 5792 7.497249 AGTGTAAAGGGAGTAGTAGTACATACG 59.503 40.741 10.33 0.00 39.55 3.06
5031 5793 7.495934 GTGTAAAGGGAGTAGTAGTACATACGA 59.504 40.741 10.33 0.00 39.55 3.43
5032 5794 8.046708 TGTAAAGGGAGTAGTAGTACATACGAA 58.953 37.037 10.33 0.00 39.55 3.85
5033 5795 7.944729 AAAGGGAGTAGTAGTACATACGAAA 57.055 36.000 10.33 0.00 39.55 3.46
5034 5796 7.944729 AAGGGAGTAGTAGTACATACGAAAA 57.055 36.000 10.33 0.00 39.55 2.29
5035 5797 7.944729 AGGGAGTAGTAGTACATACGAAAAA 57.055 36.000 10.33 0.00 39.55 1.94
5036 5798 7.994194 AGGGAGTAGTAGTACATACGAAAAAG 58.006 38.462 10.33 0.00 39.55 2.27
5037 5799 7.067981 AGGGAGTAGTAGTACATACGAAAAAGG 59.932 40.741 10.33 0.00 39.55 3.11
5038 5800 6.694844 GGAGTAGTAGTACATACGAAAAAGGC 59.305 42.308 10.33 0.00 39.55 4.35
5039 5801 7.401955 AGTAGTAGTACATACGAAAAAGGCT 57.598 36.000 10.33 0.00 39.55 4.58
5040 5802 7.834803 AGTAGTAGTACATACGAAAAAGGCTT 58.165 34.615 10.33 0.00 39.55 4.35
5041 5803 8.309656 AGTAGTAGTACATACGAAAAAGGCTTT 58.690 33.333 6.68 6.68 39.55 3.51
5042 5804 7.592439 AGTAGTACATACGAAAAAGGCTTTC 57.408 36.000 13.76 0.41 39.55 2.62
5060 5822 6.737254 GCTTTCGCCCTGCTTTATATATAA 57.263 37.500 0.81 0.81 0.00 0.98
5061 5823 7.141100 GCTTTCGCCCTGCTTTATATATAAA 57.859 36.000 15.47 15.47 0.00 1.40
5077 5839 9.634021 TTATATATAAAGCAATGACCAACCACA 57.366 29.630 2.56 0.00 0.00 4.17
5078 5840 6.849085 ATATAAAGCAATGACCAACCACAA 57.151 33.333 0.00 0.00 0.00 3.33
5079 5841 3.902881 AAAGCAATGACCAACCACAAA 57.097 38.095 0.00 0.00 0.00 2.83
5080 5842 2.888834 AGCAATGACCAACCACAAAC 57.111 45.000 0.00 0.00 0.00 2.93
5081 5843 1.412343 AGCAATGACCAACCACAAACC 59.588 47.619 0.00 0.00 0.00 3.27
5082 5844 1.867698 GCAATGACCAACCACAAACCG 60.868 52.381 0.00 0.00 0.00 4.44
5083 5845 1.678627 CAATGACCAACCACAAACCGA 59.321 47.619 0.00 0.00 0.00 4.69
5084 5846 2.286365 ATGACCAACCACAAACCGAT 57.714 45.000 0.00 0.00 0.00 4.18
5085 5847 2.932855 TGACCAACCACAAACCGATA 57.067 45.000 0.00 0.00 0.00 2.92
5086 5848 2.496111 TGACCAACCACAAACCGATAC 58.504 47.619 0.00 0.00 0.00 2.24
5087 5849 2.158798 TGACCAACCACAAACCGATACA 60.159 45.455 0.00 0.00 0.00 2.29
5088 5850 2.879646 GACCAACCACAAACCGATACAA 59.120 45.455 0.00 0.00 0.00 2.41
5089 5851 3.288964 ACCAACCACAAACCGATACAAA 58.711 40.909 0.00 0.00 0.00 2.83
5090 5852 3.067040 ACCAACCACAAACCGATACAAAC 59.933 43.478 0.00 0.00 0.00 2.93
5091 5853 3.293262 CAACCACAAACCGATACAAACG 58.707 45.455 0.00 0.00 0.00 3.60
5092 5854 1.264826 ACCACAAACCGATACAAACGC 59.735 47.619 0.00 0.00 0.00 4.84
5093 5855 1.264557 CCACAAACCGATACAAACGCA 59.735 47.619 0.00 0.00 0.00 5.24
5094 5856 2.303537 CACAAACCGATACAAACGCAC 58.696 47.619 0.00 0.00 0.00 5.34
5095 5857 1.070443 ACAAACCGATACAAACGCACG 60.070 47.619 0.00 0.00 0.00 5.34
5096 5858 0.110554 AAACCGATACAAACGCACGC 60.111 50.000 0.00 0.00 0.00 5.34
5097 5859 1.903783 AACCGATACAAACGCACGCC 61.904 55.000 0.00 0.00 0.00 5.68
5098 5860 2.384309 CCGATACAAACGCACGCCA 61.384 57.895 0.00 0.00 0.00 5.69
5099 5861 1.701545 CCGATACAAACGCACGCCAT 61.702 55.000 0.00 0.00 0.00 4.40
5100 5862 0.315059 CGATACAAACGCACGCCATC 60.315 55.000 0.00 0.00 0.00 3.51
5101 5863 0.724549 GATACAAACGCACGCCATCA 59.275 50.000 0.00 0.00 0.00 3.07
5102 5864 0.446222 ATACAAACGCACGCCATCAC 59.554 50.000 0.00 0.00 0.00 3.06
5103 5865 0.880718 TACAAACGCACGCCATCACA 60.881 50.000 0.00 0.00 0.00 3.58
5104 5866 1.009108 CAAACGCACGCCATCACAA 60.009 52.632 0.00 0.00 0.00 3.33
5105 5867 1.008995 AAACGCACGCCATCACAAC 60.009 52.632 0.00 0.00 0.00 3.32
5106 5868 1.719725 AAACGCACGCCATCACAACA 61.720 50.000 0.00 0.00 0.00 3.33
5107 5869 2.127270 CGCACGCCATCACAACAC 60.127 61.111 0.00 0.00 0.00 3.32
5108 5870 2.891221 CGCACGCCATCACAACACA 61.891 57.895 0.00 0.00 0.00 3.72
5109 5871 1.370414 GCACGCCATCACAACACAC 60.370 57.895 0.00 0.00 0.00 3.82
5110 5872 1.082821 CACGCCATCACAACACACG 60.083 57.895 0.00 0.00 0.00 4.49
5111 5873 2.127270 CGCCATCACAACACACGC 60.127 61.111 0.00 0.00 0.00 5.34
5112 5874 2.891221 CGCCATCACAACACACGCA 61.891 57.895 0.00 0.00 0.00 5.24
5113 5875 1.370414 GCCATCACAACACACGCAC 60.370 57.895 0.00 0.00 0.00 5.34
5114 5876 2.020926 CCATCACAACACACGCACA 58.979 52.632 0.00 0.00 0.00 4.57
5115 5877 0.316937 CCATCACAACACACGCACAC 60.317 55.000 0.00 0.00 0.00 3.82
5116 5878 0.316937 CATCACAACACACGCACACC 60.317 55.000 0.00 0.00 0.00 4.16
5117 5879 0.463654 ATCACAACACACGCACACCT 60.464 50.000 0.00 0.00 0.00 4.00
5118 5880 1.087202 TCACAACACACGCACACCTC 61.087 55.000 0.00 0.00 0.00 3.85
5119 5881 1.817941 ACAACACACGCACACCTCC 60.818 57.895 0.00 0.00 0.00 4.30
5120 5882 1.817520 CAACACACGCACACCTCCA 60.818 57.895 0.00 0.00 0.00 3.86
5121 5883 1.078072 AACACACGCACACCTCCAA 60.078 52.632 0.00 0.00 0.00 3.53
5122 5884 1.095228 AACACACGCACACCTCCAAG 61.095 55.000 0.00 0.00 0.00 3.61
5123 5885 2.111043 ACACGCACACCTCCAAGG 59.889 61.111 0.00 0.00 42.49 3.61
5124 5886 3.357079 CACGCACACCTCCAAGGC 61.357 66.667 0.00 0.00 39.63 4.35
5125 5887 3.872603 ACGCACACCTCCAAGGCA 61.873 61.111 0.00 0.00 39.63 4.75
5126 5888 2.594303 CGCACACCTCCAAGGCAA 60.594 61.111 0.00 0.00 39.63 4.52
5127 5889 2.620112 CGCACACCTCCAAGGCAAG 61.620 63.158 0.00 0.00 39.63 4.01
5128 5890 1.228245 GCACACCTCCAAGGCAAGA 60.228 57.895 0.00 0.00 39.63 3.02
5129 5891 0.610232 GCACACCTCCAAGGCAAGAT 60.610 55.000 0.00 0.00 39.63 2.40
5130 5892 1.340017 GCACACCTCCAAGGCAAGATA 60.340 52.381 0.00 0.00 39.63 1.98
5131 5893 2.359900 CACACCTCCAAGGCAAGATAC 58.640 52.381 0.00 0.00 39.63 2.24
5132 5894 1.985159 ACACCTCCAAGGCAAGATACA 59.015 47.619 0.00 0.00 39.63 2.29
5133 5895 2.578021 ACACCTCCAAGGCAAGATACAT 59.422 45.455 0.00 0.00 39.63 2.29
5134 5896 3.780294 ACACCTCCAAGGCAAGATACATA 59.220 43.478 0.00 0.00 39.63 2.29
5135 5897 4.227300 ACACCTCCAAGGCAAGATACATAA 59.773 41.667 0.00 0.00 39.63 1.90
5136 5898 5.192927 CACCTCCAAGGCAAGATACATAAA 58.807 41.667 0.00 0.00 39.63 1.40
5137 5899 5.297776 CACCTCCAAGGCAAGATACATAAAG 59.702 44.000 0.00 0.00 39.63 1.85
5138 5900 4.276926 CCTCCAAGGCAAGATACATAAAGC 59.723 45.833 0.00 0.00 0.00 3.51
5139 5901 5.116084 TCCAAGGCAAGATACATAAAGCT 57.884 39.130 0.00 0.00 0.00 3.74
5140 5902 4.883585 TCCAAGGCAAGATACATAAAGCTG 59.116 41.667 0.00 0.00 0.00 4.24
5141 5903 4.883585 CCAAGGCAAGATACATAAAGCTGA 59.116 41.667 0.00 0.00 0.00 4.26
5142 5904 5.008415 CCAAGGCAAGATACATAAAGCTGAG 59.992 44.000 0.00 0.00 0.00 3.35
5143 5905 5.365021 AGGCAAGATACATAAAGCTGAGT 57.635 39.130 0.00 0.00 0.00 3.41
5144 5906 5.121811 AGGCAAGATACATAAAGCTGAGTG 58.878 41.667 0.00 0.00 0.00 3.51
5145 5907 4.260948 GGCAAGATACATAAAGCTGAGTGC 60.261 45.833 0.00 0.00 43.29 4.40
5146 5908 4.333649 GCAAGATACATAAAGCTGAGTGCA 59.666 41.667 0.00 0.00 45.94 4.57
5147 5909 5.503683 GCAAGATACATAAAGCTGAGTGCAG 60.504 44.000 0.00 0.00 45.94 4.41
5155 5917 2.029518 CTGAGTGCAGCGACACCA 59.970 61.111 8.33 6.02 41.67 4.17
5156 5918 2.280119 TGAGTGCAGCGACACCAC 60.280 61.111 8.33 4.77 41.67 4.16
5157 5919 3.044305 GAGTGCAGCGACACCACC 61.044 66.667 8.33 0.00 41.67 4.61
5158 5920 4.626081 AGTGCAGCGACACCACCC 62.626 66.667 8.33 0.00 41.67 4.61
5161 5923 4.947147 GCAGCGACACCACCCCAA 62.947 66.667 0.00 0.00 0.00 4.12
5162 5924 2.669569 CAGCGACACCACCCCAAG 60.670 66.667 0.00 0.00 0.00 3.61
5163 5925 4.643387 AGCGACACCACCCCAAGC 62.643 66.667 0.00 0.00 0.00 4.01
5164 5926 4.947147 GCGACACCACCCCAAGCA 62.947 66.667 0.00 0.00 0.00 3.91
5165 5927 2.978010 CGACACCACCCCAAGCAC 60.978 66.667 0.00 0.00 0.00 4.40
5166 5928 2.515901 GACACCACCCCAAGCACT 59.484 61.111 0.00 0.00 0.00 4.40
5167 5929 1.758592 GACACCACCCCAAGCACTA 59.241 57.895 0.00 0.00 0.00 2.74
5168 5930 0.605589 GACACCACCCCAAGCACTAC 60.606 60.000 0.00 0.00 0.00 2.73
5169 5931 1.349542 ACACCACCCCAAGCACTACA 61.350 55.000 0.00 0.00 0.00 2.74
5170 5932 0.179004 CACCACCCCAAGCACTACAA 60.179 55.000 0.00 0.00 0.00 2.41
5171 5933 0.110486 ACCACCCCAAGCACTACAAG 59.890 55.000 0.00 0.00 0.00 3.16
5172 5934 0.400213 CCACCCCAAGCACTACAAGA 59.600 55.000 0.00 0.00 0.00 3.02
5173 5935 1.611673 CCACCCCAAGCACTACAAGAG 60.612 57.143 0.00 0.00 0.00 2.85
5174 5936 1.347707 CACCCCAAGCACTACAAGAGA 59.652 52.381 0.00 0.00 0.00 3.10
5175 5937 2.054799 ACCCCAAGCACTACAAGAGAA 58.945 47.619 0.00 0.00 0.00 2.87
5176 5938 2.039084 ACCCCAAGCACTACAAGAGAAG 59.961 50.000 0.00 0.00 0.00 2.85
5177 5939 2.616510 CCCCAAGCACTACAAGAGAAGG 60.617 54.545 0.00 0.00 0.00 3.46
5178 5940 2.079925 CCAAGCACTACAAGAGAAGGC 58.920 52.381 0.00 0.00 0.00 4.35
5179 5941 1.728971 CAAGCACTACAAGAGAAGGCG 59.271 52.381 0.00 0.00 0.00 5.52
5180 5942 0.247736 AGCACTACAAGAGAAGGCGG 59.752 55.000 0.00 0.00 0.00 6.13
5181 5943 0.741221 GCACTACAAGAGAAGGCGGG 60.741 60.000 0.00 0.00 0.00 6.13
5182 5944 0.108138 CACTACAAGAGAAGGCGGGG 60.108 60.000 0.00 0.00 0.00 5.73
5183 5945 1.153349 CTACAAGAGAAGGCGGGGC 60.153 63.158 0.00 0.00 0.00 5.80
5196 5958 4.754667 GGGGCCTCGACCGTGAAC 62.755 72.222 0.84 0.00 0.00 3.18
5197 5959 3.998672 GGGCCTCGACCGTGAACA 61.999 66.667 0.84 0.00 0.00 3.18
5198 5960 2.737376 GGCCTCGACCGTGAACAC 60.737 66.667 0.00 0.00 0.00 3.32
5216 5978 4.919653 GCCACTGCGAAGAGATGA 57.080 55.556 0.00 0.00 0.00 2.92
5217 5979 3.143675 GCCACTGCGAAGAGATGAA 57.856 52.632 0.00 0.00 0.00 2.57
5218 5980 1.005340 GCCACTGCGAAGAGATGAAG 58.995 55.000 0.00 0.00 0.00 3.02
5219 5981 1.005340 CCACTGCGAAGAGATGAAGC 58.995 55.000 0.00 0.00 0.00 3.86
5220 5982 1.005340 CACTGCGAAGAGATGAAGCC 58.995 55.000 0.00 0.00 0.00 4.35
5221 5983 0.459237 ACTGCGAAGAGATGAAGCCG 60.459 55.000 0.00 0.00 0.00 5.52
5222 5984 1.760268 CTGCGAAGAGATGAAGCCGC 61.760 60.000 0.00 0.00 42.52 6.53
5223 5985 1.811266 GCGAAGAGATGAAGCCGCA 60.811 57.895 0.00 0.00 41.89 5.69
5224 5986 1.156645 GCGAAGAGATGAAGCCGCAT 61.157 55.000 0.00 0.00 41.89 4.73
5225 5987 1.869754 GCGAAGAGATGAAGCCGCATA 60.870 52.381 0.00 0.00 41.89 3.14
5226 5988 2.473816 CGAAGAGATGAAGCCGCATAA 58.526 47.619 0.00 0.00 0.00 1.90
5227 5989 2.474359 CGAAGAGATGAAGCCGCATAAG 59.526 50.000 0.00 0.00 0.00 1.73
5228 5990 3.722147 GAAGAGATGAAGCCGCATAAGA 58.278 45.455 0.00 0.00 0.00 2.10
5229 5991 3.104843 AGAGATGAAGCCGCATAAGAC 57.895 47.619 0.00 0.00 0.00 3.01
5230 5992 1.789464 GAGATGAAGCCGCATAAGACG 59.211 52.381 0.00 0.00 0.00 4.18
5231 5993 1.409064 AGATGAAGCCGCATAAGACGA 59.591 47.619 0.00 0.00 0.00 4.20
5232 5994 2.159099 AGATGAAGCCGCATAAGACGAA 60.159 45.455 0.00 0.00 0.00 3.85
5233 5995 1.355971 TGAAGCCGCATAAGACGAAC 58.644 50.000 0.00 0.00 0.00 3.95
5234 5996 0.651031 GAAGCCGCATAAGACGAACC 59.349 55.000 0.00 0.00 0.00 3.62
5235 5997 1.082117 AAGCCGCATAAGACGAACCG 61.082 55.000 0.00 0.00 0.00 4.44
5236 5998 1.808390 GCCGCATAAGACGAACCGT 60.808 57.895 0.00 0.00 45.10 4.83
5237 5999 1.995991 CCGCATAAGACGAACCGTG 59.004 57.895 0.00 0.00 41.37 4.94
5238 6000 1.418342 CCGCATAAGACGAACCGTGG 61.418 60.000 0.00 0.00 41.37 4.94
5239 6001 1.418342 CGCATAAGACGAACCGTGGG 61.418 60.000 0.00 0.00 41.37 4.61
5240 6002 1.702491 GCATAAGACGAACCGTGGGC 61.702 60.000 0.00 0.00 41.37 5.36
5241 6003 0.108329 CATAAGACGAACCGTGGGCT 60.108 55.000 0.00 0.00 41.37 5.19
5242 6004 0.175073 ATAAGACGAACCGTGGGCTC 59.825 55.000 0.00 0.00 41.37 4.70
5243 6005 1.880819 TAAGACGAACCGTGGGCTCC 61.881 60.000 0.00 0.00 41.37 4.70
5244 6006 3.998672 GACGAACCGTGGGCTCCA 61.999 66.667 0.00 0.00 41.37 3.86
5245 6007 3.524648 GACGAACCGTGGGCTCCAA 62.525 63.158 0.00 0.00 41.37 3.53
5246 6008 2.046314 CGAACCGTGGGCTCCAAT 60.046 61.111 0.00 0.00 34.18 3.16
5247 6009 2.398554 CGAACCGTGGGCTCCAATG 61.399 63.158 0.00 0.00 34.18 2.82
5248 6010 2.676471 AACCGTGGGCTCCAATGC 60.676 61.111 0.00 0.00 34.18 3.56
5255 6017 2.124736 GGCTCCAATGCGGCTGTA 60.125 61.111 0.00 0.00 33.14 2.74
5256 6018 1.748879 GGCTCCAATGCGGCTGTAA 60.749 57.895 0.00 0.00 33.14 2.41
5257 6019 1.429423 GCTCCAATGCGGCTGTAAC 59.571 57.895 0.00 0.00 33.14 2.50
5258 6020 1.305219 GCTCCAATGCGGCTGTAACA 61.305 55.000 0.00 0.00 33.14 2.41
5259 6021 0.447801 CTCCAATGCGGCTGTAACAC 59.552 55.000 0.00 0.00 33.14 3.32
5260 6022 0.958382 TCCAATGCGGCTGTAACACC 60.958 55.000 0.00 0.00 33.14 4.16
5261 6023 1.506262 CAATGCGGCTGTAACACCC 59.494 57.895 0.00 0.00 0.00 4.61
5262 6024 1.074072 AATGCGGCTGTAACACCCA 59.926 52.632 0.00 0.00 0.00 4.51
5263 6025 1.241315 AATGCGGCTGTAACACCCAC 61.241 55.000 0.00 0.00 0.00 4.61
5264 6026 3.419759 GCGGCTGTAACACCCACG 61.420 66.667 0.00 0.00 0.00 4.94
5265 6027 2.340809 CGGCTGTAACACCCACGA 59.659 61.111 0.00 0.00 0.00 4.35
5266 6028 1.079405 CGGCTGTAACACCCACGAT 60.079 57.895 0.00 0.00 0.00 3.73
5267 6029 1.358725 CGGCTGTAACACCCACGATG 61.359 60.000 0.00 0.00 0.00 3.84
5268 6030 1.644786 GGCTGTAACACCCACGATGC 61.645 60.000 0.00 0.00 0.00 3.91
5269 6031 1.966493 GCTGTAACACCCACGATGCG 61.966 60.000 0.00 0.00 0.00 4.73
5270 6032 1.358725 CTGTAACACCCACGATGCGG 61.359 60.000 0.00 0.00 0.00 5.69
5271 6033 2.435234 TAACACCCACGATGCGGC 60.435 61.111 0.00 0.00 0.00 6.53
5272 6034 2.949909 TAACACCCACGATGCGGCT 61.950 57.895 0.00 0.00 0.00 5.52
5273 6035 1.605971 TAACACCCACGATGCGGCTA 61.606 55.000 0.00 0.00 0.00 3.93
5274 6036 2.108976 CACCCACGATGCGGCTAT 59.891 61.111 0.00 0.00 0.00 2.97
5275 6037 1.365999 CACCCACGATGCGGCTATA 59.634 57.895 0.00 0.00 0.00 1.31
5276 6038 0.037326 CACCCACGATGCGGCTATAT 60.037 55.000 0.00 0.00 0.00 0.86
5277 6039 0.246635 ACCCACGATGCGGCTATATC 59.753 55.000 0.00 0.00 0.00 1.63
5278 6040 0.532573 CCCACGATGCGGCTATATCT 59.467 55.000 0.00 0.00 0.00 1.98
5279 6041 1.469940 CCCACGATGCGGCTATATCTC 60.470 57.143 0.00 0.00 0.00 2.75
5280 6042 1.469940 CCACGATGCGGCTATATCTCC 60.470 57.143 0.00 0.00 0.00 3.71
5281 6043 0.818296 ACGATGCGGCTATATCTCCC 59.182 55.000 0.00 0.00 0.00 4.30
5282 6044 0.817654 CGATGCGGCTATATCTCCCA 59.182 55.000 0.00 0.00 0.00 4.37
5283 6045 1.469940 CGATGCGGCTATATCTCCCAC 60.470 57.143 0.00 0.00 0.00 4.61
5284 6046 0.532573 ATGCGGCTATATCTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
5285 6047 0.826256 TGCGGCTATATCTCCCACGT 60.826 55.000 0.00 0.00 0.00 4.49
5286 6048 0.388649 GCGGCTATATCTCCCACGTG 60.389 60.000 9.08 9.08 0.00 4.49
5287 6049 0.959553 CGGCTATATCTCCCACGTGT 59.040 55.000 15.65 0.00 0.00 4.49
5288 6050 1.068472 CGGCTATATCTCCCACGTGTC 60.068 57.143 15.65 0.00 0.00 3.67
5289 6051 1.068472 GGCTATATCTCCCACGTGTCG 60.068 57.143 15.65 4.04 0.00 4.35
5290 6052 1.068472 GCTATATCTCCCACGTGTCGG 60.068 57.143 15.65 9.74 0.00 4.79
5291 6053 2.501261 CTATATCTCCCACGTGTCGGA 58.499 52.381 15.65 13.73 0.00 4.55
5292 6054 1.319541 ATATCTCCCACGTGTCGGAG 58.680 55.000 26.30 26.30 46.07 4.63
5293 6055 1.381928 TATCTCCCACGTGTCGGAGC 61.382 60.000 27.01 0.00 44.61 4.70
5294 6056 3.680786 CTCCCACGTGTCGGAGCA 61.681 66.667 22.68 0.35 39.36 4.26
5295 6057 2.994995 TCCCACGTGTCGGAGCAT 60.995 61.111 15.65 0.00 0.00 3.79
5296 6058 2.815211 CCCACGTGTCGGAGCATG 60.815 66.667 15.65 0.00 0.00 4.06
5297 6059 2.261361 CCACGTGTCGGAGCATGA 59.739 61.111 15.65 0.00 0.00 3.07
5298 6060 2.094659 CCACGTGTCGGAGCATGAC 61.095 63.158 15.65 0.00 36.88 3.06
5299 6061 1.080501 CACGTGTCGGAGCATGACT 60.081 57.895 7.58 0.00 37.26 3.41
5300 6062 0.667487 CACGTGTCGGAGCATGACTT 60.667 55.000 7.58 0.00 37.26 3.01
5301 6063 0.885879 ACGTGTCGGAGCATGACTTA 59.114 50.000 0.00 0.00 37.26 2.24
5302 6064 1.135373 ACGTGTCGGAGCATGACTTAG 60.135 52.381 0.00 0.00 37.26 2.18
5303 6065 1.132453 CGTGTCGGAGCATGACTTAGA 59.868 52.381 0.00 0.00 37.26 2.10
5304 6066 2.792890 CGTGTCGGAGCATGACTTAGAG 60.793 54.545 0.00 0.00 37.26 2.43
5305 6067 1.751351 TGTCGGAGCATGACTTAGAGG 59.249 52.381 0.00 0.00 37.26 3.69
5306 6068 0.747255 TCGGAGCATGACTTAGAGGC 59.253 55.000 0.00 0.00 0.00 4.70
5307 6069 0.461548 CGGAGCATGACTTAGAGGCA 59.538 55.000 0.00 0.00 37.84 4.75
5309 6071 2.297315 CGGAGCATGACTTAGAGGCATA 59.703 50.000 0.00 0.00 43.49 3.14
5310 6072 3.243873 CGGAGCATGACTTAGAGGCATAA 60.244 47.826 0.00 0.00 43.49 1.90
5311 6073 4.061596 GGAGCATGACTTAGAGGCATAAC 58.938 47.826 0.00 0.00 43.49 1.89
5312 6074 4.061596 GAGCATGACTTAGAGGCATAACC 58.938 47.826 0.00 0.00 43.49 2.85
5313 6075 2.802816 GCATGACTTAGAGGCATAACCG 59.197 50.000 0.00 0.00 43.49 4.44
5314 6076 2.596904 TGACTTAGAGGCATAACCGC 57.403 50.000 0.00 0.00 46.52 5.68
5315 6077 1.828595 TGACTTAGAGGCATAACCGCA 59.171 47.619 0.00 0.00 46.52 5.69
5316 6078 2.434336 TGACTTAGAGGCATAACCGCAT 59.566 45.455 0.00 0.00 46.52 4.73
5317 6079 3.639561 TGACTTAGAGGCATAACCGCATA 59.360 43.478 0.00 0.00 46.52 3.14
5318 6080 4.238514 GACTTAGAGGCATAACCGCATAG 58.761 47.826 0.00 0.00 46.52 2.23
5319 6081 3.641906 ACTTAGAGGCATAACCGCATAGT 59.358 43.478 0.00 0.00 46.52 2.12
5320 6082 4.831155 ACTTAGAGGCATAACCGCATAGTA 59.169 41.667 0.00 0.00 46.52 1.82
5321 6083 3.944055 AGAGGCATAACCGCATAGTAG 57.056 47.619 0.00 0.00 46.52 2.57
5322 6084 2.563179 AGAGGCATAACCGCATAGTAGG 59.437 50.000 0.00 0.00 46.52 3.18
5323 6085 1.002087 AGGCATAACCGCATAGTAGGC 59.998 52.381 0.00 0.00 46.52 3.93
5324 6086 1.270625 GGCATAACCGCATAGTAGGCA 60.271 52.381 7.67 0.00 0.00 4.75
5325 6087 2.615493 GGCATAACCGCATAGTAGGCAT 60.615 50.000 7.67 0.00 0.00 4.40
5326 6088 2.416547 GCATAACCGCATAGTAGGCATG 59.583 50.000 7.67 4.25 0.00 4.06
5327 6089 3.664107 CATAACCGCATAGTAGGCATGT 58.336 45.455 7.67 0.39 0.00 3.21
5328 6090 2.710096 AACCGCATAGTAGGCATGTT 57.290 45.000 7.67 6.73 0.00 2.71
5329 6091 1.953559 ACCGCATAGTAGGCATGTTG 58.046 50.000 7.67 0.00 0.00 3.33
5330 6092 0.588252 CCGCATAGTAGGCATGTTGC 59.412 55.000 7.67 0.00 44.08 4.17
5339 6101 4.102113 GCATGTTGCAAGAGGGGT 57.898 55.556 10.42 0.00 44.26 4.95
5340 6102 3.264574 GCATGTTGCAAGAGGGGTA 57.735 52.632 10.42 0.00 44.26 3.69
5341 6103 1.544724 GCATGTTGCAAGAGGGGTAA 58.455 50.000 10.42 0.00 44.26 2.85
5342 6104 2.102578 GCATGTTGCAAGAGGGGTAAT 58.897 47.619 10.42 0.00 44.26 1.89
5343 6105 2.099756 GCATGTTGCAAGAGGGGTAATC 59.900 50.000 10.42 0.00 44.26 1.75
5344 6106 3.624777 CATGTTGCAAGAGGGGTAATCT 58.375 45.455 0.00 0.00 0.00 2.40
5345 6107 3.806949 TGTTGCAAGAGGGGTAATCTT 57.193 42.857 0.00 0.00 37.49 2.40
5346 6108 4.112634 TGTTGCAAGAGGGGTAATCTTT 57.887 40.909 0.00 0.00 34.80 2.52
5347 6109 5.249780 TGTTGCAAGAGGGGTAATCTTTA 57.750 39.130 0.00 0.00 34.80 1.85
5348 6110 5.007682 TGTTGCAAGAGGGGTAATCTTTAC 58.992 41.667 0.00 0.00 34.80 2.01
5349 6111 4.919774 TGCAAGAGGGGTAATCTTTACA 57.080 40.909 0.00 0.00 34.80 2.41
5350 6112 4.585879 TGCAAGAGGGGTAATCTTTACAC 58.414 43.478 0.00 0.00 34.80 2.90
5351 6113 4.042311 TGCAAGAGGGGTAATCTTTACACA 59.958 41.667 2.41 0.00 34.80 3.72
5352 6114 5.193679 GCAAGAGGGGTAATCTTTACACAT 58.806 41.667 2.41 0.00 34.80 3.21
5353 6115 5.297029 GCAAGAGGGGTAATCTTTACACATC 59.703 44.000 6.27 6.27 34.80 3.06
5354 6116 5.632034 AGAGGGGTAATCTTTACACATCC 57.368 43.478 9.87 2.12 32.63 3.51
5355 6117 4.412528 AGAGGGGTAATCTTTACACATCCC 59.587 45.833 9.87 6.17 32.63 3.85
5356 6118 4.116113 AGGGGTAATCTTTACACATCCCA 58.884 43.478 10.27 0.00 35.77 4.37
5357 6119 4.731929 AGGGGTAATCTTTACACATCCCAT 59.268 41.667 10.27 0.00 35.77 4.00
5358 6120 4.827284 GGGGTAATCTTTACACATCCCATG 59.173 45.833 2.41 0.00 35.77 3.66
5359 6121 5.445964 GGGTAATCTTTACACATCCCATGT 58.554 41.667 0.00 0.00 46.22 3.21
5360 6122 6.409925 GGGGTAATCTTTACACATCCCATGTA 60.410 42.308 2.41 0.00 42.70 2.29
5361 6123 6.485648 GGGTAATCTTTACACATCCCATGTAC 59.514 42.308 0.00 0.00 42.70 2.90
5362 6124 7.280356 GGTAATCTTTACACATCCCATGTACT 58.720 38.462 0.00 0.00 42.70 2.73
5363 6125 7.226720 GGTAATCTTTACACATCCCATGTACTG 59.773 40.741 0.00 0.00 42.70 2.74
5364 6126 6.560003 ATCTTTACACATCCCATGTACTGA 57.440 37.500 0.00 0.00 42.70 3.41
5365 6127 6.367374 TCTTTACACATCCCATGTACTGAA 57.633 37.500 0.00 0.00 42.70 3.02
5366 6128 6.957631 TCTTTACACATCCCATGTACTGAAT 58.042 36.000 0.00 0.00 42.70 2.57
5367 6129 8.084985 TCTTTACACATCCCATGTACTGAATA 57.915 34.615 0.00 0.00 42.70 1.75
5368 6130 8.544622 TCTTTACACATCCCATGTACTGAATAA 58.455 33.333 0.00 0.00 42.70 1.40
5369 6131 8.731275 TTTACACATCCCATGTACTGAATAAG 57.269 34.615 0.00 0.00 42.70 1.73
5370 6132 6.560003 ACACATCCCATGTACTGAATAAGA 57.440 37.500 0.00 0.00 42.70 2.10
5371 6133 6.957631 ACACATCCCATGTACTGAATAAGAA 58.042 36.000 0.00 0.00 42.70 2.52
5372 6134 7.402054 ACACATCCCATGTACTGAATAAGAAA 58.598 34.615 0.00 0.00 42.70 2.52
5373 6135 7.554118 ACACATCCCATGTACTGAATAAGAAAG 59.446 37.037 0.00 0.00 42.70 2.62
5374 6136 7.554118 CACATCCCATGTACTGAATAAGAAAGT 59.446 37.037 0.00 0.00 42.70 2.66
5375 6137 7.554118 ACATCCCATGTACTGAATAAGAAAGTG 59.446 37.037 0.00 0.00 42.78 3.16
5376 6138 7.252612 TCCCATGTACTGAATAAGAAAGTGA 57.747 36.000 0.00 0.00 0.00 3.41
5377 6139 7.861629 TCCCATGTACTGAATAAGAAAGTGAT 58.138 34.615 0.00 0.00 0.00 3.06
5378 6140 8.988060 TCCCATGTACTGAATAAGAAAGTGATA 58.012 33.333 0.00 0.00 0.00 2.15
5379 6141 9.613428 CCCATGTACTGAATAAGAAAGTGATAA 57.387 33.333 0.00 0.00 0.00 1.75
5388 6150 8.730680 TGAATAAGAAAGTGATAAAGAGTTGGC 58.269 33.333 0.00 0.00 0.00 4.52
5389 6151 8.870075 AATAAGAAAGTGATAAAGAGTTGGCT 57.130 30.769 0.00 0.00 0.00 4.75
5390 6152 8.870075 ATAAGAAAGTGATAAAGAGTTGGCTT 57.130 30.769 0.00 0.00 0.00 4.35
5391 6153 9.959721 ATAAGAAAGTGATAAAGAGTTGGCTTA 57.040 29.630 0.00 0.00 0.00 3.09
5392 6154 7.674471 AGAAAGTGATAAAGAGTTGGCTTAC 57.326 36.000 0.00 0.00 0.00 2.34
5393 6155 7.224297 AGAAAGTGATAAAGAGTTGGCTTACA 58.776 34.615 0.00 0.00 0.00 2.41
5394 6156 7.719633 AGAAAGTGATAAAGAGTTGGCTTACAA 59.280 33.333 0.00 0.00 36.54 2.41
5395 6157 8.409358 AAAGTGATAAAGAGTTGGCTTACAAT 57.591 30.769 0.00 0.00 41.95 2.71
5396 6158 7.617041 AGTGATAAAGAGTTGGCTTACAATC 57.383 36.000 0.00 0.00 41.95 2.67
5397 6159 6.313905 AGTGATAAAGAGTTGGCTTACAATCG 59.686 38.462 0.00 0.00 41.95 3.34
5398 6160 3.831715 AAAGAGTTGGCTTACAATCGC 57.168 42.857 0.00 0.00 41.95 4.58
5399 6161 1.739067 AGAGTTGGCTTACAATCGCC 58.261 50.000 0.00 0.00 46.46 5.54
5405 6167 1.448985 GGCTTACAATCGCCACTTCA 58.551 50.000 0.00 0.00 45.59 3.02
5406 6168 1.130561 GGCTTACAATCGCCACTTCAC 59.869 52.381 0.00 0.00 45.59 3.18
5407 6169 1.804151 GCTTACAATCGCCACTTCACA 59.196 47.619 0.00 0.00 0.00 3.58
5408 6170 2.412847 GCTTACAATCGCCACTTCACAC 60.413 50.000 0.00 0.00 0.00 3.82
5409 6171 2.535012 TACAATCGCCACTTCACACA 57.465 45.000 0.00 0.00 0.00 3.72
5410 6172 1.674359 ACAATCGCCACTTCACACAA 58.326 45.000 0.00 0.00 0.00 3.33
5411 6173 2.229792 ACAATCGCCACTTCACACAAT 58.770 42.857 0.00 0.00 0.00 2.71
5412 6174 3.407698 ACAATCGCCACTTCACACAATA 58.592 40.909 0.00 0.00 0.00 1.90
5413 6175 3.188460 ACAATCGCCACTTCACACAATAC 59.812 43.478 0.00 0.00 0.00 1.89
5414 6176 2.535012 TCGCCACTTCACACAATACA 57.465 45.000 0.00 0.00 0.00 2.29
5415 6177 3.052455 TCGCCACTTCACACAATACAT 57.948 42.857 0.00 0.00 0.00 2.29
5416 6178 4.195225 TCGCCACTTCACACAATACATA 57.805 40.909 0.00 0.00 0.00 2.29
5417 6179 4.570930 TCGCCACTTCACACAATACATAA 58.429 39.130 0.00 0.00 0.00 1.90
5418 6180 4.998033 TCGCCACTTCACACAATACATAAA 59.002 37.500 0.00 0.00 0.00 1.40
5419 6181 5.645929 TCGCCACTTCACACAATACATAAAT 59.354 36.000 0.00 0.00 0.00 1.40
5420 6182 6.819146 TCGCCACTTCACACAATACATAAATA 59.181 34.615 0.00 0.00 0.00 1.40
5421 6183 7.497579 TCGCCACTTCACACAATACATAAATAT 59.502 33.333 0.00 0.00 0.00 1.28
5422 6184 8.769891 CGCCACTTCACACAATACATAAATATA 58.230 33.333 0.00 0.00 0.00 0.86
5446 6208 9.970553 ATAGCATTACATCATCCAGAATACAAT 57.029 29.630 0.00 0.00 0.00 2.71
5447 6209 8.332996 AGCATTACATCATCCAGAATACAATC 57.667 34.615 0.00 0.00 0.00 2.67
5448 6210 7.940688 AGCATTACATCATCCAGAATACAATCA 59.059 33.333 0.00 0.00 0.00 2.57
5449 6211 8.570488 GCATTACATCATCCAGAATACAATCAA 58.430 33.333 0.00 0.00 0.00 2.57
5451 6213 8.681486 TTACATCATCCAGAATACAATCAAGG 57.319 34.615 0.00 0.00 0.00 3.61
5452 6214 6.666678 ACATCATCCAGAATACAATCAAGGT 58.333 36.000 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.292828 AGCCTAACAGCCAAACACAT 57.707 45.000 0.00 0.00 0.00 3.21
582 762 4.395542 ACGTCAACTATCAGAGTCTACACC 59.604 45.833 0.00 0.00 37.44 4.16
783 990 4.216257 ACGAAAACAGCACAAAGATAGCAT 59.784 37.500 0.00 0.00 0.00 3.79
797 1006 4.755123 AGTCTATGTCCCAAACGAAAACAG 59.245 41.667 0.00 0.00 0.00 3.16
863 1078 5.501156 AGATAATTCAAGGGTGGTTCTGAC 58.499 41.667 0.00 0.00 0.00 3.51
911 1127 5.794894 TCATCAGGTAAGAGTTTCTTGGAC 58.205 41.667 1.71 0.00 37.29 4.02
1411 1686 6.887013 AGATGATTAAGACAAGAGATGCAGT 58.113 36.000 0.00 0.00 0.00 4.40
2229 2513 2.555199 CCCAATTTTTCCACGCAACAA 58.445 42.857 0.00 0.00 0.00 2.83
2365 2649 0.472471 TCTTGTGGTTCAGGGGTGTC 59.528 55.000 0.00 0.00 0.00 3.67
2367 2651 0.537371 GGTCTTGTGGTTCAGGGGTG 60.537 60.000 0.00 0.00 0.00 4.61
2819 3442 2.754552 TGATTGGGTACTTGATTGCTGC 59.245 45.455 0.00 0.00 0.00 5.25
3135 3773 4.574828 ACCACTATCATCGTTATTGGCAAC 59.425 41.667 0.00 0.00 0.00 4.17
3453 4094 2.076863 GCTTGGTATGTGACAGTCACC 58.923 52.381 27.51 14.84 46.40 4.02
3823 4476 1.350684 TCTTCCTAGTGTGCCATGCAA 59.649 47.619 0.00 0.00 41.47 4.08
3925 4629 5.560966 TTTTCTTCGACAACTGAAGCTTT 57.439 34.783 0.00 0.00 42.02 3.51
4281 4985 5.140747 AGACATACACTGAAGTCCTCAAC 57.859 43.478 0.00 0.00 32.17 3.18
4317 5021 1.553248 AGCAGGATTACTACAACGCCA 59.447 47.619 0.00 0.00 0.00 5.69
4384 5088 3.116174 AGTTAATCCCACTTCCCTCTCC 58.884 50.000 0.00 0.00 0.00 3.71
4539 5243 5.883661 ACATGAAGAAAAATGCTGATACGG 58.116 37.500 0.00 0.00 0.00 4.02
4578 5282 0.464373 ACAGACAGCAACACCAGTGG 60.464 55.000 7.91 7.91 34.19 4.00
4662 5367 3.018856 TCCATTACACGACGATGTACCT 58.981 45.455 0.00 0.00 34.79 3.08
4734 5439 5.339611 CGACCAATCTCGAACACAAAAATTC 59.660 40.000 0.00 0.00 35.58 2.17
4744 5449 2.810650 AGTATGCGACCAATCTCGAAC 58.189 47.619 0.00 0.00 35.58 3.95
4835 5549 2.109425 AATGAGGTACCAACTTCCGC 57.891 50.000 15.94 0.00 30.85 5.54
4850 5564 3.439857 ACAAGCCAGAAAGCCTAATGA 57.560 42.857 0.00 0.00 0.00 2.57
4942 5677 8.970859 ACTTGTTTTAGATGAGAATATGGGAG 57.029 34.615 0.00 0.00 0.00 4.30
5051 5813 9.634021 TGTGGTTGGTCATTGCTTTATATATAA 57.366 29.630 0.81 0.81 0.00 0.98
5052 5814 9.634021 TTGTGGTTGGTCATTGCTTTATATATA 57.366 29.630 0.00 0.00 0.00 0.86
5053 5815 8.532186 TTGTGGTTGGTCATTGCTTTATATAT 57.468 30.769 0.00 0.00 0.00 0.86
5054 5816 7.946381 TTGTGGTTGGTCATTGCTTTATATA 57.054 32.000 0.00 0.00 0.00 0.86
5055 5817 6.849085 TTGTGGTTGGTCATTGCTTTATAT 57.151 33.333 0.00 0.00 0.00 0.86
5056 5818 6.451393 GTTTGTGGTTGGTCATTGCTTTATA 58.549 36.000 0.00 0.00 0.00 0.98
5057 5819 5.296748 GTTTGTGGTTGGTCATTGCTTTAT 58.703 37.500 0.00 0.00 0.00 1.40
5058 5820 4.442192 GGTTTGTGGTTGGTCATTGCTTTA 60.442 41.667 0.00 0.00 0.00 1.85
5059 5821 3.530535 GTTTGTGGTTGGTCATTGCTTT 58.469 40.909 0.00 0.00 0.00 3.51
5060 5822 2.158971 GGTTTGTGGTTGGTCATTGCTT 60.159 45.455 0.00 0.00 0.00 3.91
5061 5823 1.412343 GGTTTGTGGTTGGTCATTGCT 59.588 47.619 0.00 0.00 0.00 3.91
5062 5824 1.864565 GGTTTGTGGTTGGTCATTGC 58.135 50.000 0.00 0.00 0.00 3.56
5063 5825 1.678627 TCGGTTTGTGGTTGGTCATTG 59.321 47.619 0.00 0.00 0.00 2.82
5064 5826 2.060050 TCGGTTTGTGGTTGGTCATT 57.940 45.000 0.00 0.00 0.00 2.57
5065 5827 2.286365 ATCGGTTTGTGGTTGGTCAT 57.714 45.000 0.00 0.00 0.00 3.06
5066 5828 2.158798 TGTATCGGTTTGTGGTTGGTCA 60.159 45.455 0.00 0.00 0.00 4.02
5067 5829 2.496111 TGTATCGGTTTGTGGTTGGTC 58.504 47.619 0.00 0.00 0.00 4.02
5068 5830 2.642154 TGTATCGGTTTGTGGTTGGT 57.358 45.000 0.00 0.00 0.00 3.67
5069 5831 3.634283 GTTTGTATCGGTTTGTGGTTGG 58.366 45.455 0.00 0.00 0.00 3.77
5070 5832 3.293262 CGTTTGTATCGGTTTGTGGTTG 58.707 45.455 0.00 0.00 0.00 3.77
5071 5833 2.287129 GCGTTTGTATCGGTTTGTGGTT 60.287 45.455 0.00 0.00 0.00 3.67
5072 5834 1.264826 GCGTTTGTATCGGTTTGTGGT 59.735 47.619 0.00 0.00 0.00 4.16
5073 5835 1.264557 TGCGTTTGTATCGGTTTGTGG 59.735 47.619 0.00 0.00 0.00 4.17
5074 5836 2.303537 GTGCGTTTGTATCGGTTTGTG 58.696 47.619 0.00 0.00 0.00 3.33
5075 5837 1.070443 CGTGCGTTTGTATCGGTTTGT 60.070 47.619 0.00 0.00 0.00 2.83
5076 5838 1.586908 CGTGCGTTTGTATCGGTTTG 58.413 50.000 0.00 0.00 0.00 2.93
5077 5839 0.110554 GCGTGCGTTTGTATCGGTTT 60.111 50.000 0.00 0.00 0.00 3.27
5078 5840 1.494189 GCGTGCGTTTGTATCGGTT 59.506 52.632 0.00 0.00 0.00 4.44
5079 5841 2.385091 GGCGTGCGTTTGTATCGGT 61.385 57.895 0.00 0.00 0.00 4.69
5080 5842 1.701545 ATGGCGTGCGTTTGTATCGG 61.702 55.000 0.00 0.00 0.00 4.18
5081 5843 0.315059 GATGGCGTGCGTTTGTATCG 60.315 55.000 0.00 0.00 0.00 2.92
5082 5844 0.724549 TGATGGCGTGCGTTTGTATC 59.275 50.000 0.00 0.00 0.00 2.24
5083 5845 0.446222 GTGATGGCGTGCGTTTGTAT 59.554 50.000 0.00 0.00 0.00 2.29
5084 5846 0.880718 TGTGATGGCGTGCGTTTGTA 60.881 50.000 0.00 0.00 0.00 2.41
5085 5847 1.719725 TTGTGATGGCGTGCGTTTGT 61.720 50.000 0.00 0.00 0.00 2.83
5086 5848 1.009108 TTGTGATGGCGTGCGTTTG 60.009 52.632 0.00 0.00 0.00 2.93
5087 5849 1.008995 GTTGTGATGGCGTGCGTTT 60.009 52.632 0.00 0.00 0.00 3.60
5088 5850 2.183504 TGTTGTGATGGCGTGCGTT 61.184 52.632 0.00 0.00 0.00 4.84
5089 5851 2.590291 TGTTGTGATGGCGTGCGT 60.590 55.556 0.00 0.00 0.00 5.24
5090 5852 2.127270 GTGTTGTGATGGCGTGCG 60.127 61.111 0.00 0.00 0.00 5.34
5091 5853 1.370414 GTGTGTTGTGATGGCGTGC 60.370 57.895 0.00 0.00 0.00 5.34
5092 5854 1.082821 CGTGTGTTGTGATGGCGTG 60.083 57.895 0.00 0.00 0.00 5.34
5093 5855 2.892334 GCGTGTGTTGTGATGGCGT 61.892 57.895 0.00 0.00 0.00 5.68
5094 5856 2.127270 GCGTGTGTTGTGATGGCG 60.127 61.111 0.00 0.00 0.00 5.69
5095 5857 1.370414 GTGCGTGTGTTGTGATGGC 60.370 57.895 0.00 0.00 0.00 4.40
5096 5858 0.316937 GTGTGCGTGTGTTGTGATGG 60.317 55.000 0.00 0.00 0.00 3.51
5097 5859 0.316937 GGTGTGCGTGTGTTGTGATG 60.317 55.000 0.00 0.00 0.00 3.07
5098 5860 0.463654 AGGTGTGCGTGTGTTGTGAT 60.464 50.000 0.00 0.00 0.00 3.06
5099 5861 1.078778 AGGTGTGCGTGTGTTGTGA 60.079 52.632 0.00 0.00 0.00 3.58
5100 5862 1.351707 GAGGTGTGCGTGTGTTGTG 59.648 57.895 0.00 0.00 0.00 3.33
5101 5863 1.817941 GGAGGTGTGCGTGTGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
5102 5864 1.372838 TTGGAGGTGTGCGTGTGTTG 61.373 55.000 0.00 0.00 0.00 3.33
5103 5865 1.078072 TTGGAGGTGTGCGTGTGTT 60.078 52.632 0.00 0.00 0.00 3.32
5104 5866 1.523711 CTTGGAGGTGTGCGTGTGT 60.524 57.895 0.00 0.00 0.00 3.72
5105 5867 2.253758 CCTTGGAGGTGTGCGTGTG 61.254 63.158 0.00 0.00 0.00 3.82
5106 5868 2.111043 CCTTGGAGGTGTGCGTGT 59.889 61.111 0.00 0.00 0.00 4.49
5107 5869 3.357079 GCCTTGGAGGTGTGCGTG 61.357 66.667 0.00 0.00 37.80 5.34
5108 5870 3.414136 TTGCCTTGGAGGTGTGCGT 62.414 57.895 0.00 0.00 37.80 5.24
5109 5871 2.594303 TTGCCTTGGAGGTGTGCG 60.594 61.111 0.00 0.00 37.80 5.34
5110 5872 0.610232 ATCTTGCCTTGGAGGTGTGC 60.610 55.000 0.00 0.00 37.80 4.57
5111 5873 2.290260 TGTATCTTGCCTTGGAGGTGTG 60.290 50.000 0.00 0.00 37.80 3.82
5112 5874 1.985159 TGTATCTTGCCTTGGAGGTGT 59.015 47.619 0.00 0.00 37.80 4.16
5113 5875 2.787473 TGTATCTTGCCTTGGAGGTG 57.213 50.000 0.00 0.00 37.80 4.00
5114 5876 5.440610 CTTTATGTATCTTGCCTTGGAGGT 58.559 41.667 0.00 0.00 37.80 3.85
5115 5877 4.276926 GCTTTATGTATCTTGCCTTGGAGG 59.723 45.833 0.00 0.00 38.80 4.30
5116 5878 5.008415 CAGCTTTATGTATCTTGCCTTGGAG 59.992 44.000 0.00 0.00 0.00 3.86
5117 5879 4.883585 CAGCTTTATGTATCTTGCCTTGGA 59.116 41.667 0.00 0.00 0.00 3.53
5118 5880 4.883585 TCAGCTTTATGTATCTTGCCTTGG 59.116 41.667 0.00 0.00 0.00 3.61
5119 5881 5.587844 ACTCAGCTTTATGTATCTTGCCTTG 59.412 40.000 0.00 0.00 0.00 3.61
5120 5882 5.587844 CACTCAGCTTTATGTATCTTGCCTT 59.412 40.000 0.00 0.00 0.00 4.35
5121 5883 5.121811 CACTCAGCTTTATGTATCTTGCCT 58.878 41.667 0.00 0.00 0.00 4.75
5122 5884 4.260948 GCACTCAGCTTTATGTATCTTGCC 60.261 45.833 0.00 0.00 41.15 4.52
5123 5885 4.333649 TGCACTCAGCTTTATGTATCTTGC 59.666 41.667 0.00 0.00 45.94 4.01
5124 5886 6.045698 CTGCACTCAGCTTTATGTATCTTG 57.954 41.667 0.00 0.00 45.94 3.02
5138 5900 2.029518 TGGTGTCGCTGCACTCAG 59.970 61.111 0.00 0.00 43.16 3.35
5139 5901 2.280119 GTGGTGTCGCTGCACTCA 60.280 61.111 0.00 0.00 39.21 3.41
5140 5902 3.044305 GGTGGTGTCGCTGCACTC 61.044 66.667 0.00 0.00 39.21 3.51
5141 5903 4.626081 GGGTGGTGTCGCTGCACT 62.626 66.667 0.00 0.00 39.21 4.40
5144 5906 4.947147 TTGGGGTGGTGTCGCTGC 62.947 66.667 0.00 0.00 0.00 5.25
5145 5907 2.669569 CTTGGGGTGGTGTCGCTG 60.670 66.667 0.00 0.00 0.00 5.18
5146 5908 4.643387 GCTTGGGGTGGTGTCGCT 62.643 66.667 0.00 0.00 0.00 4.93
5147 5909 4.947147 TGCTTGGGGTGGTGTCGC 62.947 66.667 0.00 0.00 0.00 5.19
5148 5910 2.107041 TAGTGCTTGGGGTGGTGTCG 62.107 60.000 0.00 0.00 0.00 4.35
5149 5911 0.605589 GTAGTGCTTGGGGTGGTGTC 60.606 60.000 0.00 0.00 0.00 3.67
5150 5912 1.349542 TGTAGTGCTTGGGGTGGTGT 61.350 55.000 0.00 0.00 0.00 4.16
5151 5913 0.179004 TTGTAGTGCTTGGGGTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
5152 5914 0.110486 CTTGTAGTGCTTGGGGTGGT 59.890 55.000 0.00 0.00 0.00 4.16
5153 5915 0.400213 TCTTGTAGTGCTTGGGGTGG 59.600 55.000 0.00 0.00 0.00 4.61
5154 5916 1.347707 TCTCTTGTAGTGCTTGGGGTG 59.652 52.381 0.00 0.00 0.00 4.61
5155 5917 1.729586 TCTCTTGTAGTGCTTGGGGT 58.270 50.000 0.00 0.00 0.00 4.95
5156 5918 2.616510 CCTTCTCTTGTAGTGCTTGGGG 60.617 54.545 0.00 0.00 0.00 4.96
5157 5919 2.704572 CCTTCTCTTGTAGTGCTTGGG 58.295 52.381 0.00 0.00 0.00 4.12
5158 5920 2.079925 GCCTTCTCTTGTAGTGCTTGG 58.920 52.381 0.00 0.00 0.00 3.61
5159 5921 1.728971 CGCCTTCTCTTGTAGTGCTTG 59.271 52.381 0.00 0.00 0.00 4.01
5160 5922 1.338200 CCGCCTTCTCTTGTAGTGCTT 60.338 52.381 0.00 0.00 0.00 3.91
5161 5923 0.247736 CCGCCTTCTCTTGTAGTGCT 59.752 55.000 0.00 0.00 0.00 4.40
5162 5924 0.741221 CCCGCCTTCTCTTGTAGTGC 60.741 60.000 0.00 0.00 0.00 4.40
5163 5925 0.108138 CCCCGCCTTCTCTTGTAGTG 60.108 60.000 0.00 0.00 0.00 2.74
5164 5926 1.900545 GCCCCGCCTTCTCTTGTAGT 61.901 60.000 0.00 0.00 0.00 2.73
5165 5927 1.153349 GCCCCGCCTTCTCTTGTAG 60.153 63.158 0.00 0.00 0.00 2.74
5166 5928 2.666098 GGCCCCGCCTTCTCTTGTA 61.666 63.158 0.00 0.00 46.69 2.41
5167 5929 4.035102 GGCCCCGCCTTCTCTTGT 62.035 66.667 0.00 0.00 46.69 3.16
5179 5941 4.754667 GTTCACGGTCGAGGCCCC 62.755 72.222 0.00 0.00 0.00 5.80
5180 5942 3.998672 TGTTCACGGTCGAGGCCC 61.999 66.667 0.00 0.00 0.00 5.80
5181 5943 2.737376 GTGTTCACGGTCGAGGCC 60.737 66.667 0.00 0.00 0.00 5.19
5182 5944 3.103911 CGTGTTCACGGTCGAGGC 61.104 66.667 16.17 0.00 0.00 4.70
5183 5945 3.103911 GCGTGTTCACGGTCGAGG 61.104 66.667 23.27 0.00 0.00 4.63
5184 5946 3.103911 GGCGTGTTCACGGTCGAG 61.104 66.667 23.27 0.00 0.00 4.04
5185 5947 3.902086 TGGCGTGTTCACGGTCGA 61.902 61.111 23.27 5.71 0.00 4.20
5186 5948 3.698463 GTGGCGTGTTCACGGTCG 61.698 66.667 23.27 2.35 0.00 4.79
5187 5949 2.279918 AGTGGCGTGTTCACGGTC 60.280 61.111 23.27 10.12 39.86 4.79
5188 5950 2.587753 CAGTGGCGTGTTCACGGT 60.588 61.111 23.27 0.00 39.86 4.83
5189 5951 4.012895 GCAGTGGCGTGTTCACGG 62.013 66.667 23.27 9.98 39.86 4.94
5199 5961 1.005340 CTTCATCTCTTCGCAGTGGC 58.995 55.000 0.00 0.00 0.00 5.01
5200 5962 1.005340 GCTTCATCTCTTCGCAGTGG 58.995 55.000 0.00 0.00 0.00 4.00
5201 5963 1.005340 GGCTTCATCTCTTCGCAGTG 58.995 55.000 0.00 0.00 0.00 3.66
5202 5964 0.459237 CGGCTTCATCTCTTCGCAGT 60.459 55.000 0.00 0.00 0.00 4.40
5203 5965 1.760268 GCGGCTTCATCTCTTCGCAG 61.760 60.000 0.00 0.00 42.27 5.18
5204 5966 1.811266 GCGGCTTCATCTCTTCGCA 60.811 57.895 0.00 0.00 42.27 5.10
5205 5967 1.156645 ATGCGGCTTCATCTCTTCGC 61.157 55.000 0.00 0.00 42.90 4.70
5206 5968 2.140065 TATGCGGCTTCATCTCTTCG 57.860 50.000 0.00 0.00 0.00 3.79
5207 5969 3.492756 GTCTTATGCGGCTTCATCTCTTC 59.507 47.826 0.00 0.00 0.00 2.87
5208 5970 3.462021 GTCTTATGCGGCTTCATCTCTT 58.538 45.455 0.00 0.00 0.00 2.85
5209 5971 2.544694 CGTCTTATGCGGCTTCATCTCT 60.545 50.000 0.00 0.00 0.00 3.10
5210 5972 1.789464 CGTCTTATGCGGCTTCATCTC 59.211 52.381 0.00 0.00 0.00 2.75
5211 5973 1.409064 TCGTCTTATGCGGCTTCATCT 59.591 47.619 0.00 0.00 0.00 2.90
5212 5974 1.852942 TCGTCTTATGCGGCTTCATC 58.147 50.000 0.00 0.00 0.00 2.92
5213 5975 1.933853 GTTCGTCTTATGCGGCTTCAT 59.066 47.619 0.00 0.00 0.00 2.57
5214 5976 1.355971 GTTCGTCTTATGCGGCTTCA 58.644 50.000 0.00 0.00 0.00 3.02
5215 5977 0.651031 GGTTCGTCTTATGCGGCTTC 59.349 55.000 0.00 0.00 0.00 3.86
5216 5978 1.082117 CGGTTCGTCTTATGCGGCTT 61.082 55.000 0.00 0.00 0.00 4.35
5217 5979 1.518572 CGGTTCGTCTTATGCGGCT 60.519 57.895 0.00 0.00 0.00 5.52
5218 5980 1.808390 ACGGTTCGTCTTATGCGGC 60.808 57.895 0.00 0.00 33.69 6.53
5219 5981 1.418342 CCACGGTTCGTCTTATGCGG 61.418 60.000 0.00 0.00 38.32 5.69
5220 5982 1.418342 CCCACGGTTCGTCTTATGCG 61.418 60.000 0.00 0.00 38.32 4.73
5221 5983 1.702491 GCCCACGGTTCGTCTTATGC 61.702 60.000 0.00 0.00 38.32 3.14
5222 5984 0.108329 AGCCCACGGTTCGTCTTATG 60.108 55.000 0.00 0.00 38.32 1.90
5223 5985 0.175073 GAGCCCACGGTTCGTCTTAT 59.825 55.000 0.00 0.00 38.32 1.73
5224 5986 1.588082 GAGCCCACGGTTCGTCTTA 59.412 57.895 0.00 0.00 38.32 2.10
5225 5987 2.342648 GAGCCCACGGTTCGTCTT 59.657 61.111 0.00 0.00 38.32 3.01
5226 5988 3.692406 GGAGCCCACGGTTCGTCT 61.692 66.667 0.00 0.00 38.32 4.18
5227 5989 2.798148 ATTGGAGCCCACGGTTCGTC 62.798 60.000 0.00 0.00 38.32 4.20
5228 5990 2.890766 ATTGGAGCCCACGGTTCGT 61.891 57.895 0.00 0.00 42.36 3.85
5229 5991 2.046314 ATTGGAGCCCACGGTTCG 60.046 61.111 0.00 0.00 33.63 3.95
5230 5992 2.700773 GCATTGGAGCCCACGGTTC 61.701 63.158 0.00 0.00 30.78 3.62
5231 5993 2.676471 GCATTGGAGCCCACGGTT 60.676 61.111 0.00 0.00 30.78 4.44
5237 5999 3.697439 TACAGCCGCATTGGAGCCC 62.697 63.158 0.00 0.00 42.00 5.19
5238 6000 1.748879 TTACAGCCGCATTGGAGCC 60.749 57.895 0.00 0.00 42.00 4.70
5239 6001 1.305219 TGTTACAGCCGCATTGGAGC 61.305 55.000 0.00 0.00 42.00 4.70
5240 6002 0.447801 GTGTTACAGCCGCATTGGAG 59.552 55.000 0.00 0.00 42.00 3.86
5241 6003 0.958382 GGTGTTACAGCCGCATTGGA 60.958 55.000 2.78 0.00 42.00 3.53
5242 6004 1.506262 GGTGTTACAGCCGCATTGG 59.494 57.895 2.78 0.00 42.50 3.16
5243 6005 1.506262 GGGTGTTACAGCCGCATTG 59.494 57.895 18.05 0.00 42.21 2.82
5244 6006 3.996614 GGGTGTTACAGCCGCATT 58.003 55.556 18.05 0.00 42.21 3.56
5250 6012 1.794222 GCATCGTGGGTGTTACAGC 59.206 57.895 5.94 5.94 0.00 4.40
5251 6013 1.358725 CCGCATCGTGGGTGTTACAG 61.359 60.000 0.00 0.00 0.00 2.74
5252 6014 1.374885 CCGCATCGTGGGTGTTACA 60.375 57.895 0.00 0.00 0.00 2.41
5253 6015 2.746803 GCCGCATCGTGGGTGTTAC 61.747 63.158 0.00 0.00 33.18 2.50
5254 6016 1.605971 TAGCCGCATCGTGGGTGTTA 61.606 55.000 8.47 0.00 44.01 2.41
5255 6017 2.252072 ATAGCCGCATCGTGGGTGTT 62.252 55.000 8.47 0.00 44.01 3.32
5256 6018 1.396607 TATAGCCGCATCGTGGGTGT 61.397 55.000 8.47 4.53 44.01 4.16
5257 6019 0.037326 ATATAGCCGCATCGTGGGTG 60.037 55.000 8.47 0.00 44.01 4.61
5258 6020 0.246635 GATATAGCCGCATCGTGGGT 59.753 55.000 3.52 3.52 46.10 4.51
5259 6021 0.532573 AGATATAGCCGCATCGTGGG 59.467 55.000 0.00 0.00 33.18 4.61
5260 6022 1.469940 GGAGATATAGCCGCATCGTGG 60.470 57.143 0.00 0.00 36.10 4.94
5261 6023 1.469940 GGGAGATATAGCCGCATCGTG 60.470 57.143 0.00 0.00 0.00 4.35
5262 6024 0.818296 GGGAGATATAGCCGCATCGT 59.182 55.000 0.00 0.00 0.00 3.73
5263 6025 0.817654 TGGGAGATATAGCCGCATCG 59.182 55.000 0.00 0.00 0.00 3.84
5264 6026 1.469940 CGTGGGAGATATAGCCGCATC 60.470 57.143 0.00 0.00 0.00 3.91
5265 6027 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.000 0.00 0.00 0.00 4.73
5266 6028 0.826256 ACGTGGGAGATATAGCCGCA 60.826 55.000 0.00 0.00 0.00 5.69
5267 6029 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.000 7.95 0.00 0.00 6.53
5268 6030 0.959553 ACACGTGGGAGATATAGCCG 59.040 55.000 21.57 0.00 0.00 5.52
5269 6031 1.068472 CGACACGTGGGAGATATAGCC 60.068 57.143 21.57 0.00 0.00 3.93
5270 6032 1.068472 CCGACACGTGGGAGATATAGC 60.068 57.143 21.57 0.00 0.00 2.97
5271 6033 2.501261 TCCGACACGTGGGAGATATAG 58.499 52.381 21.57 0.00 32.32 1.31
5272 6034 2.643995 TCCGACACGTGGGAGATATA 57.356 50.000 21.57 0.00 32.32 0.86
5273 6035 3.507675 TCCGACACGTGGGAGATAT 57.492 52.632 21.57 0.00 32.32 1.63
5278 6040 2.994995 ATGCTCCGACACGTGGGA 60.995 61.111 21.57 16.34 36.07 4.37
5279 6041 2.815211 CATGCTCCGACACGTGGG 60.815 66.667 21.57 12.60 0.00 4.61
5280 6042 2.094659 GTCATGCTCCGACACGTGG 61.095 63.158 21.57 1.58 33.43 4.94
5281 6043 0.667487 AAGTCATGCTCCGACACGTG 60.667 55.000 15.48 15.48 35.77 4.49
5282 6044 0.885879 TAAGTCATGCTCCGACACGT 59.114 50.000 0.00 0.00 35.77 4.49
5283 6045 1.132453 TCTAAGTCATGCTCCGACACG 59.868 52.381 0.00 0.00 35.77 4.49
5284 6046 2.480416 CCTCTAAGTCATGCTCCGACAC 60.480 54.545 0.00 0.00 35.77 3.67
5285 6047 1.751351 CCTCTAAGTCATGCTCCGACA 59.249 52.381 0.00 0.00 35.77 4.35
5286 6048 1.537135 GCCTCTAAGTCATGCTCCGAC 60.537 57.143 0.00 0.00 0.00 4.79
5287 6049 0.747255 GCCTCTAAGTCATGCTCCGA 59.253 55.000 0.00 0.00 0.00 4.55
5288 6050 0.461548 TGCCTCTAAGTCATGCTCCG 59.538 55.000 0.00 0.00 0.00 4.63
5289 6051 2.926778 ATGCCTCTAAGTCATGCTCC 57.073 50.000 0.00 0.00 0.00 4.70
5290 6052 4.061596 GGTTATGCCTCTAAGTCATGCTC 58.938 47.826 0.00 0.00 0.00 4.26
5291 6053 3.493350 CGGTTATGCCTCTAAGTCATGCT 60.493 47.826 0.00 0.00 34.25 3.79
5292 6054 2.802816 CGGTTATGCCTCTAAGTCATGC 59.197 50.000 0.00 0.00 34.25 4.06
5293 6055 2.802816 GCGGTTATGCCTCTAAGTCATG 59.197 50.000 0.00 0.00 34.25 3.07
5294 6056 2.434336 TGCGGTTATGCCTCTAAGTCAT 59.566 45.455 0.00 0.00 34.25 3.06
5295 6057 1.828595 TGCGGTTATGCCTCTAAGTCA 59.171 47.619 0.00 0.00 34.25 3.41
5296 6058 2.596904 TGCGGTTATGCCTCTAAGTC 57.403 50.000 0.00 0.00 34.25 3.01
5297 6059 3.641906 ACTATGCGGTTATGCCTCTAAGT 59.358 43.478 0.00 0.00 34.25 2.24
5298 6060 4.258702 ACTATGCGGTTATGCCTCTAAG 57.741 45.455 0.00 0.00 34.25 2.18
5299 6061 4.219944 CCTACTATGCGGTTATGCCTCTAA 59.780 45.833 0.00 0.00 34.25 2.10
5300 6062 3.762288 CCTACTATGCGGTTATGCCTCTA 59.238 47.826 0.00 0.00 34.25 2.43
5301 6063 2.563179 CCTACTATGCGGTTATGCCTCT 59.437 50.000 0.00 0.00 34.25 3.69
5302 6064 2.931320 GCCTACTATGCGGTTATGCCTC 60.931 54.545 0.00 0.00 34.25 4.70
5303 6065 1.002087 GCCTACTATGCGGTTATGCCT 59.998 52.381 0.00 0.00 34.25 4.75
5304 6066 1.270625 TGCCTACTATGCGGTTATGCC 60.271 52.381 0.00 0.00 0.00 4.40
5305 6067 2.163818 TGCCTACTATGCGGTTATGC 57.836 50.000 0.00 0.00 0.00 3.14
5306 6068 3.664107 ACATGCCTACTATGCGGTTATG 58.336 45.455 0.00 0.00 0.00 1.90
5307 6069 4.065088 CAACATGCCTACTATGCGGTTAT 58.935 43.478 0.00 0.00 30.75 1.89
5308 6070 3.462982 CAACATGCCTACTATGCGGTTA 58.537 45.455 0.00 0.00 30.75 2.85
5309 6071 2.288666 CAACATGCCTACTATGCGGTT 58.711 47.619 0.00 0.00 31.62 4.44
5310 6072 1.953559 CAACATGCCTACTATGCGGT 58.046 50.000 0.00 0.00 0.00 5.68
5311 6073 0.588252 GCAACATGCCTACTATGCGG 59.412 55.000 0.00 0.00 37.42 5.69
5312 6074 1.298602 TGCAACATGCCTACTATGCG 58.701 50.000 0.00 0.00 44.23 4.73
5313 6075 2.945008 TCTTGCAACATGCCTACTATGC 59.055 45.455 0.00 0.00 44.23 3.14
5314 6076 3.562973 CCTCTTGCAACATGCCTACTATG 59.437 47.826 0.00 0.00 44.23 2.23
5315 6077 3.434167 CCCTCTTGCAACATGCCTACTAT 60.434 47.826 0.00 0.00 44.23 2.12
5316 6078 2.092968 CCCTCTTGCAACATGCCTACTA 60.093 50.000 0.00 0.00 44.23 1.82
5317 6079 1.340405 CCCTCTTGCAACATGCCTACT 60.340 52.381 0.00 0.00 44.23 2.57
5318 6080 1.098050 CCCTCTTGCAACATGCCTAC 58.902 55.000 0.00 0.00 44.23 3.18
5319 6081 0.034186 CCCCTCTTGCAACATGCCTA 60.034 55.000 0.00 0.00 44.23 3.93
5320 6082 1.304713 CCCCTCTTGCAACATGCCT 60.305 57.895 0.00 0.00 44.23 4.75
5321 6083 0.323360 TACCCCTCTTGCAACATGCC 60.323 55.000 0.00 0.00 44.23 4.40
5322 6084 1.544724 TTACCCCTCTTGCAACATGC 58.455 50.000 0.00 0.00 45.29 4.06
5323 6085 3.624777 AGATTACCCCTCTTGCAACATG 58.375 45.455 0.00 0.00 0.00 3.21
5324 6086 4.322057 AAGATTACCCCTCTTGCAACAT 57.678 40.909 0.00 0.00 31.84 2.71
5325 6087 3.806949 AAGATTACCCCTCTTGCAACA 57.193 42.857 0.00 0.00 31.84 3.33
5326 6088 5.007682 TGTAAAGATTACCCCTCTTGCAAC 58.992 41.667 0.00 0.00 33.34 4.17
5327 6089 5.007682 GTGTAAAGATTACCCCTCTTGCAA 58.992 41.667 0.00 0.00 33.34 4.08
5328 6090 4.042311 TGTGTAAAGATTACCCCTCTTGCA 59.958 41.667 0.00 0.00 33.34 4.08
5329 6091 4.585879 TGTGTAAAGATTACCCCTCTTGC 58.414 43.478 0.00 0.00 33.34 4.01
5330 6092 5.823045 GGATGTGTAAAGATTACCCCTCTTG 59.177 44.000 0.00 0.00 33.34 3.02
5331 6093 5.104067 GGGATGTGTAAAGATTACCCCTCTT 60.104 44.000 0.00 0.00 34.46 2.85
5332 6094 4.412528 GGGATGTGTAAAGATTACCCCTCT 59.587 45.833 0.00 0.00 0.00 3.69
5333 6095 4.165372 TGGGATGTGTAAAGATTACCCCTC 59.835 45.833 0.00 0.00 35.69 4.30
5334 6096 4.116113 TGGGATGTGTAAAGATTACCCCT 58.884 43.478 0.00 0.00 35.69 4.79
5335 6097 4.513406 TGGGATGTGTAAAGATTACCCC 57.487 45.455 0.00 0.00 35.69 4.95
5336 6098 5.445964 ACATGGGATGTGTAAAGATTACCC 58.554 41.667 0.00 0.00 43.01 3.69
5337 6099 7.226720 CAGTACATGGGATGTGTAAAGATTACC 59.773 40.741 0.00 0.00 44.60 2.85
5338 6100 7.985184 TCAGTACATGGGATGTGTAAAGATTAC 59.015 37.037 0.00 0.00 44.60 1.89
5339 6101 8.084985 TCAGTACATGGGATGTGTAAAGATTA 57.915 34.615 0.00 0.00 44.60 1.75
5340 6102 6.957631 TCAGTACATGGGATGTGTAAAGATT 58.042 36.000 0.00 0.00 44.60 2.40
5341 6103 6.560003 TCAGTACATGGGATGTGTAAAGAT 57.440 37.500 0.00 0.00 44.60 2.40
5342 6104 6.367374 TTCAGTACATGGGATGTGTAAAGA 57.633 37.500 0.00 0.00 44.60 2.52
5343 6105 8.731275 TTATTCAGTACATGGGATGTGTAAAG 57.269 34.615 0.00 0.00 44.60 1.85
5344 6106 8.544622 TCTTATTCAGTACATGGGATGTGTAAA 58.455 33.333 0.00 0.00 44.60 2.01
5345 6107 8.084985 TCTTATTCAGTACATGGGATGTGTAA 57.915 34.615 0.00 0.00 44.60 2.41
5346 6108 7.669089 TCTTATTCAGTACATGGGATGTGTA 57.331 36.000 0.00 0.00 44.60 2.90
5347 6109 6.560003 TCTTATTCAGTACATGGGATGTGT 57.440 37.500 0.00 0.00 44.60 3.72
5348 6110 7.554118 ACTTTCTTATTCAGTACATGGGATGTG 59.446 37.037 0.00 0.00 44.60 3.21
5349 6111 7.554118 CACTTTCTTATTCAGTACATGGGATGT 59.446 37.037 0.00 0.00 46.92 3.06
5350 6112 7.770433 TCACTTTCTTATTCAGTACATGGGATG 59.230 37.037 0.00 0.00 0.00 3.51
5351 6113 7.861629 TCACTTTCTTATTCAGTACATGGGAT 58.138 34.615 0.00 0.00 0.00 3.85
5352 6114 7.252612 TCACTTTCTTATTCAGTACATGGGA 57.747 36.000 0.00 0.00 0.00 4.37
5353 6115 9.613428 TTATCACTTTCTTATTCAGTACATGGG 57.387 33.333 0.00 0.00 0.00 4.00
5362 6124 8.730680 GCCAACTCTTTATCACTTTCTTATTCA 58.269 33.333 0.00 0.00 0.00 2.57
5363 6125 8.951243 AGCCAACTCTTTATCACTTTCTTATTC 58.049 33.333 0.00 0.00 0.00 1.75
5364 6126 8.870075 AGCCAACTCTTTATCACTTTCTTATT 57.130 30.769 0.00 0.00 0.00 1.40
5365 6127 8.870075 AAGCCAACTCTTTATCACTTTCTTAT 57.130 30.769 0.00 0.00 0.00 1.73
5366 6128 9.216117 GTAAGCCAACTCTTTATCACTTTCTTA 57.784 33.333 0.00 0.00 0.00 2.10
5367 6129 7.719633 TGTAAGCCAACTCTTTATCACTTTCTT 59.280 33.333 0.00 0.00 0.00 2.52
5368 6130 7.224297 TGTAAGCCAACTCTTTATCACTTTCT 58.776 34.615 0.00 0.00 0.00 2.52
5369 6131 7.435068 TGTAAGCCAACTCTTTATCACTTTC 57.565 36.000 0.00 0.00 0.00 2.62
5370 6132 7.817418 TTGTAAGCCAACTCTTTATCACTTT 57.183 32.000 0.00 0.00 0.00 2.66
5371 6133 7.148407 CGATTGTAAGCCAACTCTTTATCACTT 60.148 37.037 0.00 0.00 35.44 3.16
5372 6134 6.313905 CGATTGTAAGCCAACTCTTTATCACT 59.686 38.462 0.00 0.00 35.44 3.41
5373 6135 6.478588 CGATTGTAAGCCAACTCTTTATCAC 58.521 40.000 0.00 0.00 35.44 3.06
5374 6136 5.064707 GCGATTGTAAGCCAACTCTTTATCA 59.935 40.000 0.00 0.00 35.44 2.15
5375 6137 5.502606 GCGATTGTAAGCCAACTCTTTATC 58.497 41.667 0.00 0.00 35.44 1.75
5376 6138 5.485662 GCGATTGTAAGCCAACTCTTTAT 57.514 39.130 0.00 0.00 35.44 1.40
5377 6139 4.939509 GCGATTGTAAGCCAACTCTTTA 57.060 40.909 0.00 0.00 35.44 1.85
5378 6140 3.831715 GCGATTGTAAGCCAACTCTTT 57.168 42.857 0.00 0.00 35.44 2.52
5387 6149 1.804151 TGTGAAGTGGCGATTGTAAGC 59.196 47.619 0.00 0.00 0.00 3.09
5388 6150 2.805671 TGTGTGAAGTGGCGATTGTAAG 59.194 45.455 0.00 0.00 0.00 2.34
5389 6151 2.839975 TGTGTGAAGTGGCGATTGTAA 58.160 42.857 0.00 0.00 0.00 2.41
5390 6152 2.535012 TGTGTGAAGTGGCGATTGTA 57.465 45.000 0.00 0.00 0.00 2.41
5391 6153 1.674359 TTGTGTGAAGTGGCGATTGT 58.326 45.000 0.00 0.00 0.00 2.71
5392 6154 2.995466 ATTGTGTGAAGTGGCGATTG 57.005 45.000 0.00 0.00 0.00 2.67
5393 6155 3.407698 TGTATTGTGTGAAGTGGCGATT 58.592 40.909 0.00 0.00 0.00 3.34
5394 6156 3.052455 TGTATTGTGTGAAGTGGCGAT 57.948 42.857 0.00 0.00 0.00 4.58
5395 6157 2.535012 TGTATTGTGTGAAGTGGCGA 57.465 45.000 0.00 0.00 0.00 5.54
5396 6158 4.937696 TTATGTATTGTGTGAAGTGGCG 57.062 40.909 0.00 0.00 0.00 5.69
5420 6182 9.970553 ATTGTATTCTGGATGATGTAATGCTAT 57.029 29.630 0.00 0.00 0.00 2.97
5421 6183 9.440773 GATTGTATTCTGGATGATGTAATGCTA 57.559 33.333 0.00 0.00 0.00 3.49
5422 6184 7.940688 TGATTGTATTCTGGATGATGTAATGCT 59.059 33.333 0.00 0.00 0.00 3.79
5423 6185 8.102800 TGATTGTATTCTGGATGATGTAATGC 57.897 34.615 0.00 0.00 0.00 3.56
5425 6187 9.293404 CCTTGATTGTATTCTGGATGATGTAAT 57.707 33.333 0.00 0.00 0.00 1.89
5426 6188 8.274322 ACCTTGATTGTATTCTGGATGATGTAA 58.726 33.333 0.00 0.00 0.00 2.41
5427 6189 7.805163 ACCTTGATTGTATTCTGGATGATGTA 58.195 34.615 0.00 0.00 0.00 2.29
5428 6190 6.666678 ACCTTGATTGTATTCTGGATGATGT 58.333 36.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.