Multiple sequence alignment - TraesCS7A01G216200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7A01G216200
chr7A
100.000
4227
0
0
1
4227
182619322
182615096
0
7806
1
TraesCS7A01G216200
chr7D
92.891
4276
209
43
1
4227
178612231
178608002
0
6124
2
TraesCS7A01G216200
chr7B
93.484
3729
158
39
1
3686
144664723
144661037
0
5461
3
TraesCS7A01G216200
chr7B
91.522
519
26
10
3713
4227
144661041
144660537
0
699
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7A01G216200
chr7A
182615096
182619322
4226
True
7806
7806
100.000
1
4227
1
chr7A.!!$R1
4226
1
TraesCS7A01G216200
chr7D
178608002
178612231
4229
True
6124
6124
92.891
1
4227
1
chr7D.!!$R1
4226
2
TraesCS7A01G216200
chr7B
144660537
144664723
4186
True
3080
5461
92.503
1
4227
2
chr7B.!!$R1
4226
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
277
297
0.392461
TGATTTCCCGCTTTCCCTCG
60.392
55.000
0.00
0.0
0.00
4.63
F
707
732
0.546122
AGTTGTGGCTTGTGACAGGA
59.454
50.000
0.00
0.0
0.00
3.86
F
1359
1384
1.919012
TGGAAGTGCCAGGTTGACA
59.081
52.632
0.00
0.0
43.33
3.58
F
2554
2585
0.603707
CACTTCGGAAGAGCAGCCAA
60.604
55.000
23.74
0.0
43.69
4.52
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1332
1357
0.472044
TGGCACTTCCACTTGCACTA
59.528
50.000
0.00
0.00
40.72
2.74
R
1569
1594
0.884259
CACTGCCGATGTCACCACAA
60.884
55.000
0.00
0.00
35.64
3.33
R
2565
2596
1.311859
CTCTGCACAAGCTGGTTGAA
58.688
50.000
24.71
9.72
42.74
2.69
R
3526
3576
1.601914
CCAAGCAGGTAAAAACACCGC
60.602
52.381
0.00
0.00
43.84
5.68
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
47
48
3.945285
TCTCGCACCTTTTCTTGTTCTTT
59.055
39.130
0.00
0.00
0.00
2.52
77
78
0.541863
TTTCCCCTGCTTCGATCTCC
59.458
55.000
0.00
0.00
0.00
3.71
84
85
1.323271
TGCTTCGATCTCCGGCTCTT
61.323
55.000
0.00
0.00
39.14
2.85
119
120
4.389772
CGTTACCGGACCGTGATC
57.610
61.111
9.46
0.00
0.00
2.92
141
142
1.303309
GCCATGTTTAGATCTGCGCT
58.697
50.000
9.73
0.00
0.00
5.92
176
186
2.481568
GCCGCCGTTTACTCTTTTTACT
59.518
45.455
0.00
0.00
0.00
2.24
223
233
1.553308
GCATTCCGCAGATCAAAAGC
58.447
50.000
0.00
0.00
41.79
3.51
277
297
0.392461
TGATTTCCCGCTTTCCCTCG
60.392
55.000
0.00
0.00
0.00
4.63
283
303
1.583495
CCCGCTTTCCCTCGGTTTTC
61.583
60.000
0.00
0.00
43.87
2.29
284
304
0.605589
CCGCTTTCCCTCGGTTTTCT
60.606
55.000
0.00
0.00
40.72
2.52
385
409
1.060553
CACCGTTTCCAATCGATCGTG
59.939
52.381
15.94
6.88
0.00
4.35
560
585
1.137872
GAGTGGGGAGTGCTACATCTG
59.862
57.143
0.00
0.00
0.00
2.90
589
614
7.279981
TCCATAGTGTTGCATGATTACAGTTAC
59.720
37.037
0.00
0.00
0.00
2.50
613
638
0.884704
CGGTTGGACAGGTTCAGTGG
60.885
60.000
0.00
0.00
0.00
4.00
614
639
1.172812
GGTTGGACAGGTTCAGTGGC
61.173
60.000
0.00
0.00
0.00
5.01
707
732
0.546122
AGTTGTGGCTTGTGACAGGA
59.454
50.000
0.00
0.00
0.00
3.86
782
807
4.074970
TGGAGGTTCTTTCTTGATCTTGC
58.925
43.478
0.00
0.00
0.00
4.01
789
814
4.330250
TCTTTCTTGATCTTGCTTGGGAG
58.670
43.478
0.00
0.00
0.00
4.30
806
831
2.154462
GGAGTGATGGTTGACTGTTGG
58.846
52.381
0.00
0.00
0.00
3.77
963
988
5.308497
TCAAACCCTTGATTGACCAGTAGTA
59.692
40.000
0.00
0.00
36.62
1.82
976
1001
3.117888
ACCAGTAGTATTGCAATCTGGGG
60.118
47.826
32.28
22.45
44.39
4.96
1118
1143
3.257624
AGTTCGAGTAAACCCAGTACAGG
59.742
47.826
0.00
0.00
0.00
4.00
1263
1288
4.040095
CCTGCAGATGATGAGAAGGATACA
59.960
45.833
17.39
0.00
41.41
2.29
1332
1357
2.709934
AGATAAGGATCATGGTGCAGCT
59.290
45.455
18.08
0.00
34.17
4.24
1359
1384
1.919012
TGGAAGTGCCAGGTTGACA
59.081
52.632
0.00
0.00
43.33
3.58
1392
1417
6.494952
TGAGACTGGAGAAAGAGGTATTAGT
58.505
40.000
0.00
0.00
0.00
2.24
1428
1453
4.709840
ACAGGCAGTGATGTCAGC
57.290
55.556
0.00
0.00
0.00
4.26
1524
1549
5.597430
TCCAGATGATCAGGACTAGAGAT
57.403
43.478
2.06
0.00
26.13
2.75
1735
1760
4.766891
TGGATCATCCTTTTCTTCCAACAC
59.233
41.667
4.96
0.00
37.46
3.32
1749
1774
3.945346
TCCAACACTGTACACACACTTT
58.055
40.909
0.00
0.00
0.00
2.66
1758
1783
4.430007
TGTACACACACTTTGAGACTGAC
58.570
43.478
0.00
0.00
0.00
3.51
1770
1795
4.944619
TGAGACTGACAAGTTCTCATGT
57.055
40.909
6.89
0.00
36.50
3.21
1773
1798
4.880759
AGACTGACAAGTTCTCATGTCTG
58.119
43.478
10.29
10.10
44.86
3.51
1785
1810
5.762179
TCTCATGTCTGGTTATGGAGTTT
57.238
39.130
0.00
0.00
0.00
2.66
1854
1879
5.948992
AGTATTTTCCAGAACAAGCTGTC
57.051
39.130
0.00
0.00
34.06
3.51
2015
2042
3.939592
AGCCAAGAATAGCGGAAAGTTAC
59.060
43.478
0.00
0.00
0.00
2.50
2020
2047
7.210873
CCAAGAATAGCGGAAAGTTACTATCT
58.789
38.462
0.00
0.00
0.00
1.98
2044
2071
7.877612
TCTGTTTCAAGTTAGCTGAATGTATGA
59.122
33.333
0.00
0.00
0.00
2.15
2054
2081
6.290294
AGCTGAATGTATGAAAAATTGCCT
57.710
33.333
0.00
0.00
0.00
4.75
2072
2100
2.223805
GCCTGTAATGTGCTAATTGGCC
60.224
50.000
11.64
0.00
32.50
5.36
2074
2102
3.067180
CCTGTAATGTGCTAATTGGCCAG
59.933
47.826
11.64
9.50
0.00
4.85
2082
2110
4.039852
TGTGCTAATTGGCCAGATATCGTA
59.960
41.667
11.64
0.00
0.00
3.43
2093
2121
4.867047
GCCAGATATCGTATGATCTTGTGG
59.133
45.833
14.87
14.87
35.78
4.17
2251
2279
9.383519
AGCGACATAAATATCCCAGTAATATTG
57.616
33.333
0.00
0.00
31.35
1.90
2252
2280
9.162764
GCGACATAAATATCCCAGTAATATTGT
57.837
33.333
0.00
0.00
31.35
2.71
2262
2290
8.691661
ATCCCAGTAATATTGTTGTGAATACC
57.308
34.615
0.00
0.00
0.00
2.73
2319
2350
3.806625
AAAAACTGCTGCACACTGATT
57.193
38.095
0.00
0.00
0.00
2.57
2504
2535
1.067071
GCTGTACAGTTAGCCCGACTT
60.067
52.381
23.44
0.00
33.89
3.01
2524
2555
5.449553
ACTTTAATCAGGTCATCCAATCCC
58.550
41.667
0.00
0.00
35.89
3.85
2554
2585
0.603707
CACTTCGGAAGAGCAGCCAA
60.604
55.000
23.74
0.00
43.69
4.52
2565
2596
1.302832
GCAGCCAAGCCTACTGTGT
60.303
57.895
0.00
0.00
33.87
3.72
2617
2648
2.171209
TACAGCCATCGTGCACAGCT
62.171
55.000
18.64
15.48
0.00
4.24
2770
2801
4.766373
TCATTTGTTGGCACACATGAGTAT
59.234
37.500
0.00
0.00
42.62
2.12
2942
2973
1.283613
TGCGTTTCCCAGAATACCCAT
59.716
47.619
0.00
0.00
0.00
4.00
3272
3303
9.434420
TTTCCCATTTGTTTTGCATAATTAGAG
57.566
29.630
0.00
0.00
0.00
2.43
3285
3316
6.542370
TGCATAATTAGAGGTTGTAGGCTTTC
59.458
38.462
0.00
0.00
0.00
2.62
3338
3369
7.740346
CGTATGTAGATTTTTGTGTCTGTCAAC
59.260
37.037
0.00
0.00
0.00
3.18
3345
3376
8.352942
AGATTTTTGTGTCTGTCAACCTATTTC
58.647
33.333
0.00
0.00
0.00
2.17
3369
3401
5.008217
CCTGTTTTGTAGTGAACGAATGGAA
59.992
40.000
0.00
0.00
31.33
3.53
3433
3465
6.867662
ATCTTTGTGAGTTGAAATCTTCGT
57.132
33.333
0.00
0.00
0.00
3.85
3435
3467
3.878086
TGTGAGTTGAAATCTTCGTGC
57.122
42.857
0.00
0.00
0.00
5.34
3436
3468
3.202097
TGTGAGTTGAAATCTTCGTGCA
58.798
40.909
0.00
0.00
0.00
4.57
3437
3469
3.248363
TGTGAGTTGAAATCTTCGTGCAG
59.752
43.478
0.00
0.00
0.00
4.41
3468
3501
4.725556
TTAAGCTCAGTTTTGTACAGCG
57.274
40.909
0.00
0.00
32.54
5.18
3520
3570
1.952193
CAAGCCTTGTTTTGTTGGGG
58.048
50.000
0.00
0.00
0.00
4.96
3521
3571
1.484240
CAAGCCTTGTTTTGTTGGGGA
59.516
47.619
0.00
0.00
0.00
4.81
3522
3572
1.119684
AGCCTTGTTTTGTTGGGGAC
58.880
50.000
0.00
0.00
0.00
4.46
3526
3576
3.306019
GCCTTGTTTTGTTGGGGACTATG
60.306
47.826
0.00
0.00
0.00
2.23
3658
3709
5.822519
TGATTGAAGTAGGGTAATCATGTGC
59.177
40.000
0.00
0.00
35.34
4.57
3665
3716
3.966979
AGGGTAATCATGTGCATGTCAA
58.033
40.909
11.38
0.00
39.72
3.18
3702
3753
7.593644
GGCACTGATGACGTTATTTAACTTTTT
59.406
33.333
0.00
0.00
34.12
1.94
3703
3754
9.601971
GCACTGATGACGTTATTTAACTTTTTA
57.398
29.630
0.00
0.00
34.12
1.52
3726
3777
3.137446
AGTTGCTGAGCTCACTGATTT
57.863
42.857
13.74
0.00
0.00
2.17
3727
3778
2.812591
AGTTGCTGAGCTCACTGATTTG
59.187
45.455
13.74
2.01
0.00
2.32
3728
3779
2.551459
GTTGCTGAGCTCACTGATTTGT
59.449
45.455
13.74
0.00
0.00
2.83
3730
3781
1.736681
GCTGAGCTCACTGATTTGTCC
59.263
52.381
13.74
0.00
0.00
4.02
3731
3782
2.614987
GCTGAGCTCACTGATTTGTCCT
60.615
50.000
13.74
0.00
0.00
3.85
3773
3824
9.778741
CTCCCTATCAACAATTATGCTACTAAA
57.221
33.333
0.00
0.00
0.00
1.85
3794
3845
6.759497
AAATGATTGGCTACAACTTCTACC
57.241
37.500
0.00
0.00
39.87
3.18
3802
3853
5.105064
TGGCTACAACTTCTACCTAACCATC
60.105
44.000
0.00
0.00
0.00
3.51
3822
3888
4.193826
TCTTCTCTGTCCAGTTATGCAC
57.806
45.455
0.00
0.00
0.00
4.57
3826
3892
2.668457
CTCTGTCCAGTTATGCACGTTC
59.332
50.000
0.00
0.00
0.00
3.95
3850
3916
9.897744
TTCTGCAAAATGTTTATGAAGTCTTAG
57.102
29.630
0.00
0.00
0.00
2.18
3893
3960
6.990798
TCATCTGTATGTTTCCAAATGCAAA
58.009
32.000
0.00
0.00
34.50
3.68
3990
4058
4.828072
AGAAAGAACCCCACAGAGATAC
57.172
45.455
0.00
0.00
0.00
2.24
4017
4085
5.353123
TGAAAAGCTCCATGTACGGTAAATC
59.647
40.000
0.00
0.00
0.00
2.17
4032
4100
9.042008
GTACGGTAAATCATCTCATTTGTACAT
57.958
33.333
0.00
0.00
30.38
2.29
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
47
48
1.699137
AGGGGAAATGCTGCCATGA
59.301
52.632
0.00
0.00
37.23
3.07
77
78
1.219393
GGAAGAGGGACAAGAGCCG
59.781
63.158
0.00
0.00
0.00
5.52
84
85
2.683933
GCGGGAGGAAGAGGGACA
60.684
66.667
0.00
0.00
0.00
4.02
119
120
0.947244
GCAGATCTAAACATGGCCGG
59.053
55.000
0.00
0.00
0.00
6.13
176
186
4.435436
AATCTCGCGGTCGCTGCA
62.435
61.111
6.13
0.00
39.32
4.41
248
258
1.242076
CGGGAAATCATCATGGAGCC
58.758
55.000
0.00
0.00
0.00
4.70
252
262
2.035066
GGAAAGCGGGAAATCATCATGG
59.965
50.000
0.00
0.00
0.00
3.66
253
263
2.035066
GGGAAAGCGGGAAATCATCATG
59.965
50.000
0.00
0.00
0.00
3.07
254
264
2.091665
AGGGAAAGCGGGAAATCATCAT
60.092
45.455
0.00
0.00
0.00
2.45
256
266
1.950216
GAGGGAAAGCGGGAAATCATC
59.050
52.381
0.00
0.00
0.00
2.92
283
303
1.506493
ACGCAGACTTTCTTGCAGAG
58.494
50.000
0.00
0.00
0.00
3.35
284
304
1.953559
AACGCAGACTTTCTTGCAGA
58.046
45.000
0.00
0.00
0.00
4.26
365
385
1.060553
CACGATCGATTGGAAACGGTG
59.939
52.381
24.34
0.32
34.45
4.94
367
387
0.650512
CCACGATCGATTGGAAACGG
59.349
55.000
24.34
5.47
34.46
4.44
385
409
1.062525
CTCGCAGGCGCATTTTACC
59.937
57.895
10.83
0.00
38.40
2.85
503
528
1.300481
GTTAGGGATCCGCAAAGAGC
58.700
55.000
5.45
0.00
40.87
4.09
560
585
4.579454
AATCATGCAACACTATGGATGC
57.421
40.909
0.00
0.00
45.52
3.91
589
614
3.491598
AACCTGTCCAACCGCCCAG
62.492
63.158
0.00
0.00
0.00
4.45
613
638
0.036010
ATATATGGCACTGGCGAGGC
60.036
55.000
0.00
0.58
42.47
4.70
614
639
2.159043
CCTATATATGGCACTGGCGAGG
60.159
54.545
0.00
0.00
42.47
4.63
707
732
3.964031
ACCAAAGTGAGAGAGAAGTGAGT
59.036
43.478
0.00
0.00
0.00
3.41
782
807
2.224621
ACAGTCAACCATCACTCCCAAG
60.225
50.000
0.00
0.00
0.00
3.61
789
814
2.571212
TCACCAACAGTCAACCATCAC
58.429
47.619
0.00
0.00
0.00
3.06
806
831
6.064846
TCAACTCAAAGAGCAAAAGATCAC
57.935
37.500
0.00
0.00
32.04
3.06
963
988
1.077663
ACCTGAACCCCAGATTGCAAT
59.922
47.619
12.83
12.83
45.78
3.56
976
1001
3.002759
GCTCTGACAACTGAAACCTGAAC
59.997
47.826
0.00
0.00
0.00
3.18
1118
1143
1.159285
GGGCAATTTTCTTGGCAAGC
58.841
50.000
22.31
9.50
45.48
4.01
1152
1177
3.003793
GGACTTCTTTGTTTGGACTGCTC
59.996
47.826
0.00
0.00
0.00
4.26
1263
1288
4.281688
CCATCTGTGTTTCCATTTTCCACT
59.718
41.667
0.00
0.00
0.00
4.00
1332
1357
0.472044
TGGCACTTCCACTTGCACTA
59.528
50.000
0.00
0.00
40.72
2.74
1359
1384
1.713647
TCTCCAGTCTCAGACCTTCCT
59.286
52.381
0.00
0.00
32.18
3.36
1428
1453
4.139420
CTGCACGCGCTTTCCTCG
62.139
66.667
5.73
0.00
39.64
4.63
1524
1549
1.304282
GCTGAGGCCAAGAATCCCA
59.696
57.895
5.01
0.00
0.00
4.37
1569
1594
0.884259
CACTGCCGATGTCACCACAA
60.884
55.000
0.00
0.00
35.64
3.33
1735
1760
4.504461
GTCAGTCTCAAAGTGTGTGTACAG
59.496
45.833
0.00
0.00
37.52
2.74
1749
1774
4.586421
AGACATGAGAACTTGTCAGTCTCA
59.414
41.667
0.00
12.66
46.61
3.27
1758
1783
5.491070
TCCATAACCAGACATGAGAACTTG
58.509
41.667
0.00
0.00
0.00
3.16
1770
1795
2.378547
AGGGCAAAACTCCATAACCAGA
59.621
45.455
0.00
0.00
0.00
3.86
1773
1798
1.824852
CCAGGGCAAAACTCCATAACC
59.175
52.381
0.00
0.00
0.00
2.85
1785
1810
2.121506
AAGTCTCCCCCAGGGCAA
60.122
61.111
0.00
0.00
43.94
4.52
1854
1879
7.517417
GCGTAAAAGATGGATCAGACATACTTG
60.517
40.741
0.00
0.00
0.00
3.16
1955
1982
2.009774
GGGAACACACAGAATCGGATG
58.990
52.381
0.00
0.00
0.00
3.51
1995
2022
7.169982
CAGATAGTAACTTTCCGCTATTCTTGG
59.830
40.741
0.00
0.00
0.00
3.61
1996
2023
7.707035
ACAGATAGTAACTTTCCGCTATTCTTG
59.293
37.037
0.00
0.00
0.00
3.02
2015
2042
8.261492
ACATTCAGCTAACTTGAAACAGATAG
57.739
34.615
0.00
0.00
38.01
2.08
2020
2047
7.977789
TCATACATTCAGCTAACTTGAAACA
57.022
32.000
0.00
0.00
38.01
2.83
2044
2071
7.119553
CCAATTAGCACATTACAGGCAATTTTT
59.880
33.333
0.00
0.00
0.00
1.94
2054
2081
3.961849
TCTGGCCAATTAGCACATTACA
58.038
40.909
7.01
0.00
0.00
2.41
2072
2100
8.768957
ATTTCCACAAGATCATACGATATCTG
57.231
34.615
0.34
0.00
32.79
2.90
2074
2102
8.993121
ACAATTTCCACAAGATCATACGATATC
58.007
33.333
0.00
0.00
29.66
1.63
2082
2110
5.473162
TCGTTGACAATTTCCACAAGATCAT
59.527
36.000
0.00
0.00
0.00
2.45
2093
2121
5.034152
TGTTGCTTTCTCGTTGACAATTTC
58.966
37.500
0.00
0.00
0.00
2.17
2141
2169
5.833131
TCTGAAGCAAAGTAGATGGGTTTTT
59.167
36.000
0.00
0.00
0.00
1.94
2146
2174
6.115446
TGTAATCTGAAGCAAAGTAGATGGG
58.885
40.000
0.00
0.00
30.77
4.00
2154
2182
5.163591
TGCATGGATGTAATCTGAAGCAAAG
60.164
40.000
0.00
0.00
44.71
2.77
2306
2337
3.847467
GCAATATCGAATCAGTGTGCAGC
60.847
47.826
0.00
0.00
0.00
5.25
2319
2350
9.108284
TGTGATTAAGAAGAAATGCAATATCGA
57.892
29.630
0.00
0.00
0.00
3.59
2343
2374
7.372260
AGGATTTCTGCTACATAGAATCTGT
57.628
36.000
0.00
0.00
34.42
3.41
2504
2535
3.714280
TCGGGATTGGATGACCTGATTAA
59.286
43.478
0.00
0.00
34.63
1.40
2524
2555
1.497991
TCCGAAGTGCTTCTGTTTCG
58.502
50.000
9.84
0.00
41.35
3.46
2554
2585
1.543429
GCTGGTTGAACACAGTAGGCT
60.543
52.381
12.93
0.00
37.07
4.58
2565
2596
1.311859
CTCTGCACAAGCTGGTTGAA
58.688
50.000
24.71
9.72
42.74
2.69
2617
2648
1.470996
GGCCAAAGCATGTTGTGGGA
61.471
55.000
19.42
0.00
42.56
4.37
2770
2801
4.280819
CTTTGATAATCTCAGGGGCCAAA
58.719
43.478
4.39
0.00
34.68
3.28
2942
2973
3.136763
CTCTTGCTGAGAAGCTCACAAA
58.863
45.455
0.00
0.00
45.39
2.83
3248
3279
7.180051
ACCTCTAATTATGCAAAACAAATGGGA
59.820
33.333
0.00
0.00
0.00
4.37
3250
3281
8.658609
CAACCTCTAATTATGCAAAACAAATGG
58.341
33.333
0.00
0.00
0.00
3.16
3251
3282
9.206870
ACAACCTCTAATTATGCAAAACAAATG
57.793
29.630
0.00
0.00
0.00
2.32
3254
3285
8.519526
CCTACAACCTCTAATTATGCAAAACAA
58.480
33.333
0.00
0.00
0.00
2.83
3255
3286
7.362574
GCCTACAACCTCTAATTATGCAAAACA
60.363
37.037
0.00
0.00
0.00
2.83
3256
3287
6.972901
GCCTACAACCTCTAATTATGCAAAAC
59.027
38.462
0.00
0.00
0.00
2.43
3257
3288
6.889722
AGCCTACAACCTCTAATTATGCAAAA
59.110
34.615
0.00
0.00
0.00
2.44
3285
3316
1.929169
CTGTCAGACACATACATGCGG
59.071
52.381
0.00
0.00
33.23
5.69
3338
3369
6.425721
TCGTTCACTACAAAACAGGAAATAGG
59.574
38.462
0.00
0.00
0.00
2.57
3345
3376
4.513692
TCCATTCGTTCACTACAAAACAGG
59.486
41.667
0.00
0.00
0.00
4.00
3392
3424
8.067784
CACAAAGATTAGCGACTTCAAAACTTA
58.932
33.333
0.00
0.00
0.00
2.24
3435
3467
3.750130
ACTGAGCTTAATTCTGCACACTG
59.250
43.478
0.00
3.91
0.00
3.66
3436
3468
4.013267
ACTGAGCTTAATTCTGCACACT
57.987
40.909
0.00
0.00
0.00
3.55
3437
3469
4.756084
AACTGAGCTTAATTCTGCACAC
57.244
40.909
0.00
0.00
0.00
3.82
3520
3570
3.425758
GCAGGTAAAAACACCGCATAGTC
60.426
47.826
0.00
0.00
43.84
2.59
3521
3571
2.486592
GCAGGTAAAAACACCGCATAGT
59.513
45.455
0.00
0.00
43.84
2.12
3522
3572
2.747446
AGCAGGTAAAAACACCGCATAG
59.253
45.455
10.24
0.00
43.84
2.23
3526
3576
1.601914
CCAAGCAGGTAAAAACACCGC
60.602
52.381
0.00
0.00
43.84
5.68
3658
3709
2.553602
TGCCTTAGTGCAAGTTGACATG
59.446
45.455
7.16
0.00
38.56
3.21
3665
3716
2.038952
TCATCAGTGCCTTAGTGCAAGT
59.961
45.455
0.00
0.00
44.11
3.16
3675
3726
5.488341
AGTTAAATAACGTCATCAGTGCCT
58.512
37.500
0.00
0.00
40.96
4.75
3702
3753
5.604758
ATCAGTGAGCTCAGCAACTTATA
57.395
39.130
18.89
0.00
0.00
0.98
3703
3754
3.969287
TCAGTGAGCTCAGCAACTTAT
57.031
42.857
18.89
0.00
0.00
1.73
3773
3824
5.700402
AGGTAGAAGTTGTAGCCAATCAT
57.300
39.130
5.68
0.00
32.11
2.45
3794
3845
5.413309
AACTGGACAGAGAAGATGGTTAG
57.587
43.478
6.29
0.00
0.00
2.34
3802
3853
2.926200
CGTGCATAACTGGACAGAGAAG
59.074
50.000
6.29
0.00
43.36
2.85
3822
3888
6.857964
AGACTTCATAAACATTTTGCAGAACG
59.142
34.615
0.00
0.00
0.00
3.95
3826
3892
7.274250
GCCTAAGACTTCATAAACATTTTGCAG
59.726
37.037
0.00
0.00
0.00
4.41
3850
3916
2.038952
TGATATAGATGCACCTGTGGCC
59.961
50.000
0.00
0.00
0.00
5.36
4017
4085
6.647895
TCGATCCATGATGTACAAATGAGATG
59.352
38.462
18.68
13.82
0.00
2.90
4032
4100
8.560355
TGAATTTTAAACTTCTCGATCCATGA
57.440
30.769
16.45
0.00
0.00
3.07
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.