Multiple sequence alignment - TraesCS7A01G216100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G216100 chr7A 100.000 4467 0 0 1 4467 182611709 182616175 0.000000e+00 8250.0
1 TraesCS7A01G216100 chr7D 91.932 3012 154 49 1506 4467 178606133 178609105 0.000000e+00 4133.0
2 TraesCS7A01G216100 chr7D 92.878 688 30 7 696 1368 178605376 178606059 0.000000e+00 981.0
3 TraesCS7A01G216100 chr7D 93.277 119 3 3 291 408 178605276 178605390 2.140000e-38 171.0
4 TraesCS7A01G216100 chr7D 100.000 32 0 0 1360 1391 178606068 178606099 4.830000e-05 60.2
5 TraesCS7A01G216100 chr7B 91.481 2418 152 35 1504 3902 144658659 144661041 0.000000e+00 3275.0
6 TraesCS7A01G216100 chr7B 92.219 694 29 9 784 1458 144657974 144658661 0.000000e+00 959.0
7 TraesCS7A01G216100 chr7B 87.120 559 29 19 3929 4467 144661037 144661572 1.070000e-165 593.0
8 TraesCS7A01G216100 chr6D 93.624 298 19 0 402 699 58088800 58089097 3.170000e-121 446.0
9 TraesCS7A01G216100 chr3A 93.603 297 19 0 404 700 86117027 86117323 1.140000e-120 444.0
10 TraesCS7A01G216100 chr3A 91.776 304 25 0 405 708 168968857 168968554 1.490000e-114 424.0
11 TraesCS7A01G216100 chr6A 93.537 294 19 0 406 699 406255752 406256045 5.300000e-119 438.0
12 TraesCS7A01G216100 chr4A 92.384 302 21 2 399 698 93771392 93771091 3.190000e-116 429.0
13 TraesCS7A01G216100 chr4A 91.346 312 22 5 398 707 260643528 260643836 5.340000e-114 422.0
14 TraesCS7A01G216100 chr1A 91.586 309 26 0 400 708 103474029 103473721 1.150000e-115 427.0
15 TraesCS7A01G216100 chr5D 92.079 303 23 1 397 698 64969291 64969593 4.130000e-115 425.0
16 TraesCS7A01G216100 chr5B 91.558 308 24 2 400 706 616011031 616011337 1.490000e-114 424.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G216100 chr7A 182611709 182616175 4466 False 8250.0 8250 100.000000 1 4467 1 chr7A.!!$F1 4466
1 TraesCS7A01G216100 chr7D 178605276 178609105 3829 False 1336.3 4133 94.521750 291 4467 4 chr7D.!!$F1 4176
2 TraesCS7A01G216100 chr7B 144657974 144661572 3598 False 1609.0 3275 90.273333 784 4467 3 chr7B.!!$F1 3683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 271 0.032815 AAAAATGCCGTCCGTTTGGG 59.967 50.000 0.00 0.0 33.08 4.12 F
952 956 0.034380 ACTCCACCACGAGCTAGCTA 60.034 55.000 19.38 0.0 32.79 3.32 F
1786 1839 0.857675 ACCTGGCTGTTAGGGGTTTT 59.142 50.000 0.00 0.0 39.71 2.43 F
1787 1840 1.256812 CCTGGCTGTTAGGGGTTTTG 58.743 55.000 0.00 0.0 0.00 2.44 F
1793 1846 2.162681 CTGTTAGGGGTTTTGGAGCTG 58.837 52.381 0.00 0.0 0.00 4.24 F
3009 3073 0.040958 GTGATCAAATCGCCGATGCC 60.041 55.000 0.00 0.0 33.78 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 1825 0.251608 GGCAGCTCCAAAACCCCTAA 60.252 55.000 0.00 0.0 34.01 2.69 R
2822 2886 0.040958 CCTGAAAGTTGCGACAGTGC 60.041 55.000 6.90 0.0 0.00 4.40 R
2903 2967 0.813184 AATTTGGCGTCCAGATGCTG 59.187 50.000 11.42 0.0 42.72 4.41 R
3009 3073 1.135083 ACAGGGATAAGTTCAGCGACG 60.135 52.381 0.00 0.0 0.00 5.12 R
3374 3438 1.626686 ACTGCCTCTATGCTATCGCT 58.373 50.000 0.00 0.0 36.97 4.93 R
4091 4174 1.119684 AGCCTTGTTTTGTTGGGGAC 58.880 50.000 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.026879 CAGCGCGCCATCGTCTAG 61.027 66.667 30.33 2.51 38.14 2.43
25 26 3.518998 AGCGCGCCATCGTCTAGT 61.519 61.111 30.33 0.79 38.14 2.57
26 27 2.582498 GCGCGCCATCGTCTAGTT 60.582 61.111 23.24 0.00 38.14 2.24
27 28 2.165301 GCGCGCCATCGTCTAGTTT 61.165 57.895 23.24 0.00 38.14 2.66
28 29 1.693083 GCGCGCCATCGTCTAGTTTT 61.693 55.000 23.24 0.00 38.14 2.43
29 30 0.297820 CGCGCCATCGTCTAGTTTTC 59.702 55.000 0.00 0.00 38.14 2.29
30 31 1.355971 GCGCCATCGTCTAGTTTTCA 58.644 50.000 0.00 0.00 38.14 2.69
31 32 1.730064 GCGCCATCGTCTAGTTTTCAA 59.270 47.619 0.00 0.00 38.14 2.69
32 33 2.351726 GCGCCATCGTCTAGTTTTCAAT 59.648 45.455 0.00 0.00 38.14 2.57
33 34 3.181510 GCGCCATCGTCTAGTTTTCAATT 60.182 43.478 0.00 0.00 38.14 2.32
34 35 4.671766 GCGCCATCGTCTAGTTTTCAATTT 60.672 41.667 0.00 0.00 38.14 1.82
35 36 5.390613 CGCCATCGTCTAGTTTTCAATTTT 58.609 37.500 0.00 0.00 0.00 1.82
36 37 5.856455 CGCCATCGTCTAGTTTTCAATTTTT 59.144 36.000 0.00 0.00 0.00 1.94
70 71 7.869016 ATTAATGTAACATGGACTATCGTCG 57.131 36.000 0.00 0.00 41.16 5.12
71 72 3.703286 TGTAACATGGACTATCGTCGG 57.297 47.619 0.00 0.00 41.16 4.79
72 73 2.359848 TGTAACATGGACTATCGTCGGG 59.640 50.000 0.00 0.00 41.16 5.14
73 74 0.104304 AACATGGACTATCGTCGGGC 59.896 55.000 0.00 0.00 41.16 6.13
74 75 0.755698 ACATGGACTATCGTCGGGCT 60.756 55.000 0.00 0.00 41.16 5.19
75 76 0.389391 CATGGACTATCGTCGGGCTT 59.611 55.000 0.00 0.00 41.16 4.35
76 77 1.120530 ATGGACTATCGTCGGGCTTT 58.879 50.000 0.00 0.00 41.16 3.51
77 78 0.174845 TGGACTATCGTCGGGCTTTG 59.825 55.000 0.00 0.00 41.16 2.77
78 79 0.175073 GGACTATCGTCGGGCTTTGT 59.825 55.000 0.00 0.00 41.16 2.83
79 80 1.278238 GACTATCGTCGGGCTTTGTG 58.722 55.000 0.00 0.00 0.00 3.33
80 81 0.108329 ACTATCGTCGGGCTTTGTGG 60.108 55.000 0.00 0.00 0.00 4.17
81 82 1.429148 CTATCGTCGGGCTTTGTGGC 61.429 60.000 0.00 0.00 40.96 5.01
88 89 3.615709 GGCTTTGTGGCCGGCTTT 61.616 61.111 28.56 0.00 42.82 3.51
89 90 2.421314 GCTTTGTGGCCGGCTTTT 59.579 55.556 28.56 0.00 0.00 2.27
90 91 1.663173 GCTTTGTGGCCGGCTTTTA 59.337 52.632 28.56 7.82 0.00 1.52
91 92 0.246360 GCTTTGTGGCCGGCTTTTAT 59.754 50.000 28.56 0.00 0.00 1.40
92 93 1.994916 CTTTGTGGCCGGCTTTTATG 58.005 50.000 28.56 9.45 0.00 1.90
93 94 1.272212 CTTTGTGGCCGGCTTTTATGT 59.728 47.619 28.56 0.00 0.00 2.29
94 95 1.333177 TTGTGGCCGGCTTTTATGTT 58.667 45.000 28.56 0.00 0.00 2.71
95 96 1.333177 TGTGGCCGGCTTTTATGTTT 58.667 45.000 28.56 0.00 0.00 2.83
96 97 2.515854 TGTGGCCGGCTTTTATGTTTA 58.484 42.857 28.56 0.00 0.00 2.01
97 98 2.891580 TGTGGCCGGCTTTTATGTTTAA 59.108 40.909 28.56 0.00 0.00 1.52
98 99 3.511934 TGTGGCCGGCTTTTATGTTTAAT 59.488 39.130 28.56 0.00 0.00 1.40
99 100 4.021016 TGTGGCCGGCTTTTATGTTTAATT 60.021 37.500 28.56 0.00 0.00 1.40
100 101 5.185249 TGTGGCCGGCTTTTATGTTTAATTA 59.815 36.000 28.56 0.00 0.00 1.40
101 102 6.100668 GTGGCCGGCTTTTATGTTTAATTAA 58.899 36.000 28.56 0.00 0.00 1.40
102 103 6.590677 GTGGCCGGCTTTTATGTTTAATTAAA 59.409 34.615 28.56 6.54 0.00 1.52
103 104 7.279090 GTGGCCGGCTTTTATGTTTAATTAAAT 59.721 33.333 28.56 1.99 0.00 1.40
104 105 8.475639 TGGCCGGCTTTTATGTTTAATTAAATA 58.524 29.630 28.56 11.44 0.00 1.40
105 106 8.757789 GGCCGGCTTTTATGTTTAATTAAATAC 58.242 33.333 28.56 3.75 0.00 1.89
106 107 9.524106 GCCGGCTTTTATGTTTAATTAAATACT 57.476 29.630 22.15 4.90 0.00 2.12
155 156 4.352600 TTTTTATTTCCGCGCCGATAAA 57.647 36.364 0.00 7.68 0.00 1.40
156 157 4.352600 TTTTATTTCCGCGCCGATAAAA 57.647 36.364 18.95 18.95 33.78 1.52
157 158 4.352600 TTTATTTCCGCGCCGATAAAAA 57.647 36.364 0.00 0.00 0.00 1.94
158 159 4.555348 TTATTTCCGCGCCGATAAAAAT 57.445 36.364 0.00 0.09 0.00 1.82
159 160 2.181426 TTTCCGCGCCGATAAAAATG 57.819 45.000 0.00 0.00 0.00 2.32
160 161 0.378962 TTCCGCGCCGATAAAAATGG 59.621 50.000 0.00 0.00 0.00 3.16
161 162 0.462225 TCCGCGCCGATAAAAATGGA 60.462 50.000 0.00 0.00 0.00 3.41
162 163 0.591170 CCGCGCCGATAAAAATGGAT 59.409 50.000 0.00 0.00 0.00 3.41
163 164 1.399727 CCGCGCCGATAAAAATGGATC 60.400 52.381 0.00 0.00 0.00 3.36
164 165 1.721489 CGCGCCGATAAAAATGGATCG 60.721 52.381 0.00 0.00 43.59 3.69
168 169 2.989422 CGATAAAAATGGATCGGGCC 57.011 50.000 0.00 0.00 40.96 5.80
169 170 1.196808 CGATAAAAATGGATCGGGCCG 59.803 52.381 22.51 22.51 40.96 6.13
170 171 1.539827 GATAAAAATGGATCGGGCCGG 59.460 52.381 27.98 7.65 0.00 6.13
171 172 0.256464 TAAAAATGGATCGGGCCGGT 59.744 50.000 27.98 21.98 0.00 5.28
172 173 1.319614 AAAAATGGATCGGGCCGGTG 61.320 55.000 27.98 0.00 0.00 4.94
173 174 2.493273 AAAATGGATCGGGCCGGTGT 62.493 55.000 27.98 12.83 0.00 4.16
174 175 2.493273 AAATGGATCGGGCCGGTGTT 62.493 55.000 27.98 10.71 0.00 3.32
175 176 3.697439 ATGGATCGGGCCGGTGTTG 62.697 63.158 27.98 0.00 0.00 3.33
203 204 3.269347 CCGGCCCAAACGCGATAG 61.269 66.667 15.93 0.46 0.00 2.08
216 217 2.733127 CGATAGCGGACGTTTGTGT 58.267 52.632 0.00 0.00 0.00 3.72
217 218 1.065358 CGATAGCGGACGTTTGTGTT 58.935 50.000 0.00 0.00 0.00 3.32
218 219 1.058695 CGATAGCGGACGTTTGTGTTC 59.941 52.381 0.00 0.00 0.00 3.18
219 220 1.058695 GATAGCGGACGTTTGTGTTCG 59.941 52.381 0.00 0.00 43.78 3.95
220 221 0.248990 TAGCGGACGTTTGTGTTCGT 60.249 50.000 0.00 0.00 42.88 3.85
224 225 2.580661 GACGTTTGTGTTCGTCGGA 58.419 52.632 0.00 0.00 44.70 4.55
225 226 0.227986 GACGTTTGTGTTCGTCGGAC 59.772 55.000 0.00 0.00 44.70 4.79
226 227 1.147557 ACGTTTGTGTTCGTCGGACC 61.148 55.000 0.06 0.00 35.30 4.46
227 228 1.561250 GTTTGTGTTCGTCGGACCG 59.439 57.895 7.84 7.84 0.00 4.79
228 229 0.871163 GTTTGTGTTCGTCGGACCGA 60.871 55.000 13.88 13.88 34.52 4.69
237 238 3.991999 TCGGACCGACCTACACAG 58.008 61.111 13.88 0.00 36.31 3.66
238 239 1.376086 TCGGACCGACCTACACAGA 59.624 57.895 13.88 0.00 36.31 3.41
239 240 0.957395 TCGGACCGACCTACACAGAC 60.957 60.000 13.88 0.00 36.31 3.51
240 241 1.239296 CGGACCGACCTACACAGACA 61.239 60.000 8.64 0.00 36.31 3.41
241 242 0.963962 GGACCGACCTACACAGACAA 59.036 55.000 0.00 0.00 35.41 3.18
242 243 1.342174 GGACCGACCTACACAGACAAA 59.658 52.381 0.00 0.00 35.41 2.83
243 244 2.224113 GGACCGACCTACACAGACAAAA 60.224 50.000 0.00 0.00 35.41 2.44
244 245 3.460103 GACCGACCTACACAGACAAAAA 58.540 45.455 0.00 0.00 0.00 1.94
245 246 3.463944 ACCGACCTACACAGACAAAAAG 58.536 45.455 0.00 0.00 0.00 2.27
246 247 2.223377 CCGACCTACACAGACAAAAAGC 59.777 50.000 0.00 0.00 0.00 3.51
247 248 2.096909 CGACCTACACAGACAAAAAGCG 60.097 50.000 0.00 0.00 0.00 4.68
248 249 1.602377 ACCTACACAGACAAAAAGCGC 59.398 47.619 0.00 0.00 0.00 5.92
249 250 1.601903 CCTACACAGACAAAAAGCGCA 59.398 47.619 11.47 0.00 0.00 6.09
250 251 2.226437 CCTACACAGACAAAAAGCGCAT 59.774 45.455 11.47 0.00 0.00 4.73
251 252 3.435327 CCTACACAGACAAAAAGCGCATA 59.565 43.478 11.47 0.00 0.00 3.14
252 253 3.980646 ACACAGACAAAAAGCGCATAA 57.019 38.095 11.47 0.00 0.00 1.90
253 254 4.300189 ACACAGACAAAAAGCGCATAAA 57.700 36.364 11.47 0.00 0.00 1.40
254 255 4.677584 ACACAGACAAAAAGCGCATAAAA 58.322 34.783 11.47 0.00 0.00 1.52
255 256 5.105752 ACACAGACAAAAAGCGCATAAAAA 58.894 33.333 11.47 0.00 0.00 1.94
256 257 5.752955 ACACAGACAAAAAGCGCATAAAAAT 59.247 32.000 11.47 0.00 0.00 1.82
257 258 6.066410 CACAGACAAAAAGCGCATAAAAATG 58.934 36.000 11.47 1.54 0.00 2.32
258 259 5.074791 CAGACAAAAAGCGCATAAAAATGC 58.925 37.500 11.47 0.21 43.72 3.56
259 260 4.152223 AGACAAAAAGCGCATAAAAATGCC 59.848 37.500 11.47 0.00 44.27 4.40
260 261 3.120718 ACAAAAAGCGCATAAAAATGCCG 60.121 39.130 11.47 2.19 44.27 5.69
261 262 2.362169 AAAGCGCATAAAAATGCCGT 57.638 40.000 11.47 0.00 44.27 5.68
262 263 1.908065 AAGCGCATAAAAATGCCGTC 58.092 45.000 11.47 0.00 44.27 4.79
263 264 0.100503 AGCGCATAAAAATGCCGTCC 59.899 50.000 11.47 0.00 44.27 4.79
264 265 1.199852 GCGCATAAAAATGCCGTCCG 61.200 55.000 0.30 0.00 44.27 4.79
265 266 0.098025 CGCATAAAAATGCCGTCCGT 59.902 50.000 4.86 0.00 44.27 4.69
266 267 1.466697 CGCATAAAAATGCCGTCCGTT 60.467 47.619 4.86 0.00 44.27 4.44
267 268 2.601804 GCATAAAAATGCCGTCCGTTT 58.398 42.857 0.00 0.00 41.47 3.60
268 269 2.344142 GCATAAAAATGCCGTCCGTTTG 59.656 45.455 0.00 0.00 41.47 2.93
269 270 2.708386 TAAAAATGCCGTCCGTTTGG 57.292 45.000 0.00 0.00 33.08 3.28
270 271 0.032815 AAAAATGCCGTCCGTTTGGG 59.967 50.000 0.00 0.00 33.08 4.12
271 272 1.110518 AAAATGCCGTCCGTTTGGGT 61.111 50.000 0.00 0.00 37.00 4.51
272 273 1.520600 AAATGCCGTCCGTTTGGGTC 61.521 55.000 0.00 0.00 37.00 4.46
273 274 4.973055 TGCCGTCCGTTTGGGTCG 62.973 66.667 0.00 0.00 45.31 4.79
274 275 4.974989 GCCGTCCGTTTGGGTCGT 62.975 66.667 0.00 0.00 44.42 4.34
275 276 2.735857 CCGTCCGTTTGGGTCGTC 60.736 66.667 0.00 0.00 44.42 4.20
276 277 2.735857 CGTCCGTTTGGGTCGTCC 60.736 66.667 0.00 0.00 41.57 4.79
277 278 2.422591 GTCCGTTTGGGTCGTCCA 59.577 61.111 0.04 0.00 45.43 4.02
278 279 1.004200 GTCCGTTTGGGTCGTCCAT 60.004 57.895 0.04 0.00 46.52 3.41
279 280 0.604511 GTCCGTTTGGGTCGTCCATT 60.605 55.000 0.04 0.00 46.52 3.16
280 281 0.604243 TCCGTTTGGGTCGTCCATTG 60.604 55.000 0.04 0.00 46.52 2.82
281 282 0.604243 CCGTTTGGGTCGTCCATTGA 60.604 55.000 0.04 0.00 46.52 2.57
282 283 1.231221 CGTTTGGGTCGTCCATTGAA 58.769 50.000 0.04 0.00 46.52 2.69
283 284 1.196808 CGTTTGGGTCGTCCATTGAAG 59.803 52.381 0.04 0.00 46.52 3.02
284 285 2.227194 GTTTGGGTCGTCCATTGAAGT 58.773 47.619 0.04 0.00 46.52 3.01
285 286 2.621526 GTTTGGGTCGTCCATTGAAGTT 59.378 45.455 0.04 0.00 46.52 2.66
286 287 1.890876 TGGGTCGTCCATTGAAGTTG 58.109 50.000 0.04 0.00 41.46 3.16
287 288 0.521735 GGGTCGTCCATTGAAGTTGC 59.478 55.000 0.04 0.00 35.00 4.17
288 289 1.523758 GGTCGTCCATTGAAGTTGCT 58.476 50.000 0.00 0.00 0.00 3.91
289 290 1.464997 GGTCGTCCATTGAAGTTGCTC 59.535 52.381 0.00 0.00 0.00 4.26
299 300 8.677300 GTCCATTGAAGTTGCTCTTATTGATTA 58.323 33.333 0.00 0.00 36.40 1.75
351 352 4.288366 TCATCCACCTTGTTCTTCATACCA 59.712 41.667 0.00 0.00 0.00 3.25
385 386 3.853355 CCTATCAAAGGGCATCAGTCT 57.147 47.619 0.00 0.00 42.32 3.24
386 387 3.474600 CCTATCAAAGGGCATCAGTCTG 58.525 50.000 0.00 0.00 42.32 3.51
387 388 1.760192 ATCAAAGGGCATCAGTCTGC 58.240 50.000 0.00 0.00 41.53 4.26
388 389 0.401356 TCAAAGGGCATCAGTCTGCA 59.599 50.000 0.00 0.00 44.12 4.41
389 390 0.809385 CAAAGGGCATCAGTCTGCAG 59.191 55.000 7.63 7.63 44.12 4.41
402 403 3.187227 CAGTCTGCAGCAACTCGTAAATT 59.813 43.478 9.47 0.00 0.00 1.82
403 404 4.388773 CAGTCTGCAGCAACTCGTAAATTA 59.611 41.667 9.47 0.00 0.00 1.40
404 405 4.994852 AGTCTGCAGCAACTCGTAAATTAA 59.005 37.500 9.47 0.00 0.00 1.40
405 406 5.468746 AGTCTGCAGCAACTCGTAAATTAAA 59.531 36.000 9.47 0.00 0.00 1.52
406 407 5.790495 GTCTGCAGCAACTCGTAAATTAAAG 59.210 40.000 9.47 0.00 0.00 1.85
407 408 5.041951 TGCAGCAACTCGTAAATTAAAGG 57.958 39.130 0.00 0.00 0.00 3.11
408 409 4.083003 TGCAGCAACTCGTAAATTAAAGGG 60.083 41.667 0.00 0.00 0.00 3.95
409 410 4.155280 GCAGCAACTCGTAAATTAAAGGGA 59.845 41.667 0.00 0.00 0.00 4.20
410 411 5.163652 GCAGCAACTCGTAAATTAAAGGGAT 60.164 40.000 0.00 0.00 0.00 3.85
411 412 6.625081 GCAGCAACTCGTAAATTAAAGGGATT 60.625 38.462 0.00 0.00 0.00 3.01
412 413 7.312899 CAGCAACTCGTAAATTAAAGGGATTT 58.687 34.615 0.00 0.00 0.00 2.17
413 414 7.812669 CAGCAACTCGTAAATTAAAGGGATTTT 59.187 33.333 0.00 0.00 0.00 1.82
414 415 8.364894 AGCAACTCGTAAATTAAAGGGATTTTT 58.635 29.630 0.00 0.00 0.00 1.94
415 416 8.432359 GCAACTCGTAAATTAAAGGGATTTTTG 58.568 33.333 0.00 0.00 0.00 2.44
416 417 9.471084 CAACTCGTAAATTAAAGGGATTTTTGT 57.529 29.630 0.00 0.00 0.00 2.83
430 431 7.668525 GGGATTTTTGTATTCGTATCCCTAG 57.331 40.000 10.06 0.00 45.04 3.02
431 432 7.222161 GGGATTTTTGTATTCGTATCCCTAGT 58.778 38.462 10.06 0.00 45.04 2.57
432 433 7.718314 GGGATTTTTGTATTCGTATCCCTAGTT 59.282 37.037 10.06 0.00 45.04 2.24
433 434 8.557029 GGATTTTTGTATTCGTATCCCTAGTTG 58.443 37.037 0.00 0.00 0.00 3.16
434 435 7.852971 TTTTTGTATTCGTATCCCTAGTTGG 57.147 36.000 0.00 0.00 0.00 3.77
443 444 4.913126 CCTAGTTGGGTCACGCTC 57.087 61.111 0.00 0.00 0.00 5.03
444 445 1.153823 CCTAGTTGGGTCACGCTCG 60.154 63.158 0.00 0.00 0.00 5.03
445 446 1.592400 CCTAGTTGGGTCACGCTCGA 61.592 60.000 0.00 0.00 0.00 4.04
446 447 0.456312 CTAGTTGGGTCACGCTCGAC 60.456 60.000 0.00 0.00 35.03 4.20
447 448 0.892358 TAGTTGGGTCACGCTCGACT 60.892 55.000 0.00 0.00 44.37 4.18
448 449 2.022129 GTTGGGTCACGCTCGACTG 61.022 63.158 0.00 0.00 36.12 3.51
449 450 2.197605 TTGGGTCACGCTCGACTGA 61.198 57.895 0.00 0.00 36.12 3.41
450 451 1.532604 TTGGGTCACGCTCGACTGAT 61.533 55.000 0.00 0.00 36.12 2.90
451 452 1.215647 GGGTCACGCTCGACTGATT 59.784 57.895 0.00 0.00 36.12 2.57
452 453 0.389948 GGGTCACGCTCGACTGATTT 60.390 55.000 0.00 0.00 36.12 2.17
453 454 0.716108 GGTCACGCTCGACTGATTTG 59.284 55.000 0.00 0.00 36.12 2.32
454 455 0.093705 GTCACGCTCGACTGATTTGC 59.906 55.000 0.00 0.00 32.92 3.68
455 456 1.014044 TCACGCTCGACTGATTTGCC 61.014 55.000 0.00 0.00 0.00 4.52
456 457 1.741770 ACGCTCGACTGATTTGCCC 60.742 57.895 0.00 0.00 0.00 5.36
457 458 2.464459 CGCTCGACTGATTTGCCCC 61.464 63.158 0.00 0.00 0.00 5.80
458 459 1.078143 GCTCGACTGATTTGCCCCT 60.078 57.895 0.00 0.00 0.00 4.79
459 460 0.178068 GCTCGACTGATTTGCCCCTA 59.822 55.000 0.00 0.00 0.00 3.53
460 461 1.202698 GCTCGACTGATTTGCCCCTAT 60.203 52.381 0.00 0.00 0.00 2.57
461 462 2.746472 GCTCGACTGATTTGCCCCTATT 60.746 50.000 0.00 0.00 0.00 1.73
462 463 3.545703 CTCGACTGATTTGCCCCTATTT 58.454 45.455 0.00 0.00 0.00 1.40
463 464 3.947834 CTCGACTGATTTGCCCCTATTTT 59.052 43.478 0.00 0.00 0.00 1.82
464 465 4.340617 TCGACTGATTTGCCCCTATTTTT 58.659 39.130 0.00 0.00 0.00 1.94
487 488 8.804688 TTTTCAATAATTACGGTTTTGTCCAG 57.195 30.769 0.00 0.00 0.00 3.86
488 489 5.945155 TCAATAATTACGGTTTTGTCCAGC 58.055 37.500 0.00 0.00 0.00 4.85
489 490 5.708230 TCAATAATTACGGTTTTGTCCAGCT 59.292 36.000 0.00 0.00 0.00 4.24
490 491 5.813080 ATAATTACGGTTTTGTCCAGCTC 57.187 39.130 0.00 0.00 0.00 4.09
491 492 2.623878 TTACGGTTTTGTCCAGCTCA 57.376 45.000 0.00 0.00 0.00 4.26
492 493 1.873698 TACGGTTTTGTCCAGCTCAC 58.126 50.000 0.00 0.00 0.00 3.51
493 494 0.180406 ACGGTTTTGTCCAGCTCACT 59.820 50.000 0.00 0.00 0.00 3.41
494 495 1.308998 CGGTTTTGTCCAGCTCACTT 58.691 50.000 0.00 0.00 0.00 3.16
495 496 1.264288 CGGTTTTGTCCAGCTCACTTC 59.736 52.381 0.00 0.00 0.00 3.01
496 497 2.297701 GGTTTTGTCCAGCTCACTTCA 58.702 47.619 0.00 0.00 0.00 3.02
497 498 2.033424 GGTTTTGTCCAGCTCACTTCAC 59.967 50.000 0.00 0.00 0.00 3.18
498 499 2.945668 GTTTTGTCCAGCTCACTTCACT 59.054 45.455 0.00 0.00 0.00 3.41
499 500 2.533266 TTGTCCAGCTCACTTCACTC 57.467 50.000 0.00 0.00 0.00 3.51
500 501 0.315251 TGTCCAGCTCACTTCACTCG 59.685 55.000 0.00 0.00 0.00 4.18
501 502 1.011451 GTCCAGCTCACTTCACTCGC 61.011 60.000 0.00 0.00 0.00 5.03
502 503 1.739562 CCAGCTCACTTCACTCGCC 60.740 63.158 0.00 0.00 0.00 5.54
503 504 1.291588 CAGCTCACTTCACTCGCCT 59.708 57.895 0.00 0.00 0.00 5.52
504 505 0.320247 CAGCTCACTTCACTCGCCTT 60.320 55.000 0.00 0.00 0.00 4.35
505 506 0.320247 AGCTCACTTCACTCGCCTTG 60.320 55.000 0.00 0.00 0.00 3.61
506 507 0.601311 GCTCACTTCACTCGCCTTGT 60.601 55.000 0.00 0.00 0.00 3.16
507 508 1.143305 CTCACTTCACTCGCCTTGTG 58.857 55.000 0.00 0.00 36.82 3.33
508 509 0.464036 TCACTTCACTCGCCTTGTGT 59.536 50.000 0.00 0.00 36.83 3.72
509 510 1.134521 TCACTTCACTCGCCTTGTGTT 60.135 47.619 0.00 0.00 36.83 3.32
510 511 1.670811 CACTTCACTCGCCTTGTGTTT 59.329 47.619 0.00 0.00 36.83 2.83
511 512 2.097466 CACTTCACTCGCCTTGTGTTTT 59.903 45.455 0.00 0.00 36.83 2.43
512 513 2.752903 ACTTCACTCGCCTTGTGTTTTT 59.247 40.909 0.00 0.00 36.83 1.94
513 514 2.842208 TCACTCGCCTTGTGTTTTTG 57.158 45.000 0.00 0.00 36.83 2.44
514 515 1.199624 CACTCGCCTTGTGTTTTTGC 58.800 50.000 0.00 0.00 0.00 3.68
515 516 0.102300 ACTCGCCTTGTGTTTTTGCC 59.898 50.000 0.00 0.00 0.00 4.52
516 517 0.385390 CTCGCCTTGTGTTTTTGCCT 59.615 50.000 0.00 0.00 0.00 4.75
517 518 0.820871 TCGCCTTGTGTTTTTGCCTT 59.179 45.000 0.00 0.00 0.00 4.35
518 519 1.205893 TCGCCTTGTGTTTTTGCCTTT 59.794 42.857 0.00 0.00 0.00 3.11
519 520 1.592543 CGCCTTGTGTTTTTGCCTTTC 59.407 47.619 0.00 0.00 0.00 2.62
520 521 1.939934 GCCTTGTGTTTTTGCCTTTCC 59.060 47.619 0.00 0.00 0.00 3.13
521 522 2.200899 CCTTGTGTTTTTGCCTTTCCG 58.799 47.619 0.00 0.00 0.00 4.30
522 523 2.200899 CTTGTGTTTTTGCCTTTCCGG 58.799 47.619 0.00 0.00 0.00 5.14
523 524 0.461961 TGTGTTTTTGCCTTTCCGGG 59.538 50.000 0.00 0.00 0.00 5.73
524 525 0.747852 GTGTTTTTGCCTTTCCGGGA 59.252 50.000 0.00 0.00 0.00 5.14
525 526 1.343142 GTGTTTTTGCCTTTCCGGGAT 59.657 47.619 0.00 0.00 30.88 3.85
526 527 1.342819 TGTTTTTGCCTTTCCGGGATG 59.657 47.619 0.00 0.00 30.88 3.51
527 528 0.972883 TTTTTGCCTTTCCGGGATGG 59.027 50.000 10.47 10.47 40.09 3.51
528 529 0.178947 TTTTGCCTTTCCGGGATGGT 60.179 50.000 15.91 0.00 39.52 3.55
529 530 0.178947 TTTGCCTTTCCGGGATGGTT 60.179 50.000 15.91 0.00 39.52 3.67
530 531 0.610785 TTGCCTTTCCGGGATGGTTC 60.611 55.000 15.91 1.22 39.52 3.62
531 532 1.303282 GCCTTTCCGGGATGGTTCT 59.697 57.895 15.91 0.00 39.52 3.01
532 533 1.032114 GCCTTTCCGGGATGGTTCTG 61.032 60.000 15.91 0.00 39.52 3.02
533 534 0.618458 CCTTTCCGGGATGGTTCTGA 59.382 55.000 6.50 0.00 39.52 3.27
534 535 1.679032 CCTTTCCGGGATGGTTCTGAC 60.679 57.143 6.50 0.00 39.52 3.51
535 536 0.326927 TTTCCGGGATGGTTCTGACC 59.673 55.000 0.00 0.00 46.71 4.02
545 546 2.191128 GGTTCTGACCAATGAGCAGT 57.809 50.000 0.00 0.00 45.77 4.40
546 547 2.079925 GGTTCTGACCAATGAGCAGTC 58.920 52.381 0.00 0.00 45.77 3.51
547 548 1.728971 GTTCTGACCAATGAGCAGTCG 59.271 52.381 0.00 0.00 33.09 4.18
548 549 0.390340 TCTGACCAATGAGCAGTCGC 60.390 55.000 0.00 0.00 38.99 5.19
549 550 1.364626 CTGACCAATGAGCAGTCGCC 61.365 60.000 0.00 0.00 39.83 5.54
550 551 1.375908 GACCAATGAGCAGTCGCCA 60.376 57.895 0.00 0.00 39.83 5.69
551 552 1.639298 GACCAATGAGCAGTCGCCAC 61.639 60.000 0.00 0.00 39.83 5.01
552 553 2.743752 CCAATGAGCAGTCGCCACG 61.744 63.158 0.00 0.00 39.83 4.94
553 554 2.029288 CAATGAGCAGTCGCCACGT 61.029 57.895 0.00 0.00 39.83 4.49
554 555 2.029288 AATGAGCAGTCGCCACGTG 61.029 57.895 9.08 9.08 39.83 4.49
555 556 3.939837 ATGAGCAGTCGCCACGTGG 62.940 63.158 30.66 30.66 39.83 4.94
567 568 2.029964 ACGTGGCGAACCGTGATT 59.970 55.556 0.00 0.00 39.70 2.57
568 569 2.314647 ACGTGGCGAACCGTGATTG 61.315 57.895 0.00 0.00 39.70 2.67
569 570 2.867472 GTGGCGAACCGTGATTGG 59.133 61.111 0.00 0.00 39.70 3.16
570 571 1.964373 GTGGCGAACCGTGATTGGT 60.964 57.895 0.00 0.00 46.67 3.67
571 572 1.669760 TGGCGAACCGTGATTGGTC 60.670 57.895 0.00 0.00 42.89 4.02
572 573 2.736682 GGCGAACCGTGATTGGTCG 61.737 63.158 0.00 0.00 42.89 4.79
586 587 4.011517 GTCGGAACCGCCCCAGAA 62.012 66.667 8.48 0.00 39.59 3.02
587 588 3.702048 TCGGAACCGCCCCAGAAG 61.702 66.667 8.48 0.00 39.59 2.85
588 589 4.778143 CGGAACCGCCCCAGAAGG 62.778 72.222 0.00 0.00 0.00 3.46
601 602 2.758009 CCAGAAGGGCAAAAACACATG 58.242 47.619 0.00 0.00 0.00 3.21
602 603 2.102925 CCAGAAGGGCAAAAACACATGT 59.897 45.455 0.00 0.00 0.00 3.21
603 604 3.383761 CAGAAGGGCAAAAACACATGTC 58.616 45.455 0.00 0.00 0.00 3.06
604 605 3.030291 AGAAGGGCAAAAACACATGTCA 58.970 40.909 0.00 0.00 0.00 3.58
605 606 3.450457 AGAAGGGCAAAAACACATGTCAA 59.550 39.130 0.00 0.00 0.00 3.18
606 607 3.457610 AGGGCAAAAACACATGTCAAG 57.542 42.857 0.00 0.00 0.00 3.02
607 608 2.765699 AGGGCAAAAACACATGTCAAGT 59.234 40.909 0.00 0.00 0.00 3.16
608 609 2.865551 GGGCAAAAACACATGTCAAGTG 59.134 45.455 6.65 6.65 42.56 3.16
609 610 3.430098 GGGCAAAAACACATGTCAAGTGA 60.430 43.478 14.81 0.00 40.16 3.41
610 611 4.180057 GGCAAAAACACATGTCAAGTGAA 58.820 39.130 14.81 0.00 40.16 3.18
611 612 4.268405 GGCAAAAACACATGTCAAGTGAAG 59.732 41.667 14.81 1.65 40.16 3.02
612 613 4.864247 GCAAAAACACATGTCAAGTGAAGT 59.136 37.500 14.81 0.00 40.16 3.01
613 614 5.220265 GCAAAAACACATGTCAAGTGAAGTG 60.220 40.000 14.81 7.97 40.16 3.16
614 615 5.895636 AAAACACATGTCAAGTGAAGTGA 57.104 34.783 14.81 0.00 40.16 3.41
615 616 5.490139 AAACACATGTCAAGTGAAGTGAG 57.510 39.130 14.81 4.36 40.16 3.51
616 617 4.142609 ACACATGTCAAGTGAAGTGAGT 57.857 40.909 14.81 4.84 40.16 3.41
617 618 4.517285 ACACATGTCAAGTGAAGTGAGTT 58.483 39.130 14.81 0.00 40.16 3.01
618 619 4.333649 ACACATGTCAAGTGAAGTGAGTTG 59.666 41.667 14.81 0.00 40.16 3.16
619 620 3.879295 ACATGTCAAGTGAAGTGAGTTGG 59.121 43.478 0.00 0.00 0.00 3.77
620 621 2.917933 TGTCAAGTGAAGTGAGTTGGG 58.082 47.619 0.00 0.00 0.00 4.12
621 622 1.604278 GTCAAGTGAAGTGAGTTGGGC 59.396 52.381 0.00 0.00 0.00 5.36
622 623 1.211703 TCAAGTGAAGTGAGTTGGGCA 59.788 47.619 0.00 0.00 0.00 5.36
623 624 2.023673 CAAGTGAAGTGAGTTGGGCAA 58.976 47.619 0.00 0.00 0.00 4.52
624 625 2.426738 CAAGTGAAGTGAGTTGGGCAAA 59.573 45.455 0.00 0.00 0.00 3.68
625 626 2.733956 AGTGAAGTGAGTTGGGCAAAA 58.266 42.857 0.00 0.00 0.00 2.44
626 627 2.427095 AGTGAAGTGAGTTGGGCAAAAC 59.573 45.455 0.00 0.00 0.00 2.43
627 628 1.754226 TGAAGTGAGTTGGGCAAAACC 59.246 47.619 0.00 0.00 37.93 3.27
628 629 0.744281 AAGTGAGTTGGGCAAAACCG 59.256 50.000 0.00 0.00 40.62 4.44
629 630 0.395173 AGTGAGTTGGGCAAAACCGT 60.395 50.000 0.00 0.00 40.62 4.83
630 631 1.134037 AGTGAGTTGGGCAAAACCGTA 60.134 47.619 0.00 0.00 40.62 4.02
631 632 1.677052 GTGAGTTGGGCAAAACCGTAA 59.323 47.619 0.00 0.00 40.62 3.18
632 633 2.295070 GTGAGTTGGGCAAAACCGTAAT 59.705 45.455 0.00 0.00 40.62 1.89
633 634 2.959707 TGAGTTGGGCAAAACCGTAATT 59.040 40.909 0.00 0.00 40.62 1.40
634 635 3.243569 TGAGTTGGGCAAAACCGTAATTG 60.244 43.478 0.00 0.00 40.62 2.32
642 643 5.396750 GCAAAACCGTAATTGCTGAAAAA 57.603 34.783 12.44 0.00 46.42 1.94
662 663 6.451064 AAAAATAGGGGCAAATTAGTCGAG 57.549 37.500 0.00 0.00 0.00 4.04
663 664 2.614829 TAGGGGCAAATTAGTCGAGC 57.385 50.000 0.00 0.00 0.00 5.03
664 665 0.462047 AGGGGCAAATTAGTCGAGCG 60.462 55.000 0.00 0.00 0.00 5.03
665 666 0.743345 GGGGCAAATTAGTCGAGCGT 60.743 55.000 0.00 0.00 0.00 5.07
666 667 0.373716 GGGCAAATTAGTCGAGCGTG 59.626 55.000 0.00 0.00 0.00 5.34
667 668 1.355971 GGCAAATTAGTCGAGCGTGA 58.644 50.000 0.00 0.00 0.00 4.35
668 669 1.060698 GGCAAATTAGTCGAGCGTGAC 59.939 52.381 3.48 3.48 39.21 3.67
669 670 1.060698 GCAAATTAGTCGAGCGTGACC 59.939 52.381 7.62 0.00 39.77 4.02
670 671 1.659098 CAAATTAGTCGAGCGTGACCC 59.341 52.381 7.62 0.00 39.77 4.46
671 672 0.892755 AATTAGTCGAGCGTGACCCA 59.107 50.000 7.62 0.00 39.77 4.51
672 673 0.892755 ATTAGTCGAGCGTGACCCAA 59.107 50.000 7.62 3.83 39.77 4.12
673 674 0.038892 TTAGTCGAGCGTGACCCAAC 60.039 55.000 7.62 0.00 39.77 3.77
674 675 0.892358 TAGTCGAGCGTGACCCAACT 60.892 55.000 7.62 0.00 39.77 3.16
675 676 0.892358 AGTCGAGCGTGACCCAACTA 60.892 55.000 7.62 0.00 39.77 2.24
676 677 0.456312 GTCGAGCGTGACCCAACTAG 60.456 60.000 0.40 0.00 32.61 2.57
677 678 1.153823 CGAGCGTGACCCAACTAGG 60.154 63.158 0.00 0.00 37.03 3.02
688 689 1.949465 CCAACTAGGGGCACGAATAC 58.051 55.000 0.00 0.00 0.00 1.89
689 690 1.208535 CCAACTAGGGGCACGAATACA 59.791 52.381 0.00 0.00 0.00 2.29
690 691 2.355310 CCAACTAGGGGCACGAATACAA 60.355 50.000 0.00 0.00 0.00 2.41
691 692 3.541632 CAACTAGGGGCACGAATACAAT 58.458 45.455 0.00 0.00 0.00 2.71
692 693 3.926058 ACTAGGGGCACGAATACAATT 57.074 42.857 0.00 0.00 0.00 2.32
693 694 3.541632 ACTAGGGGCACGAATACAATTG 58.458 45.455 3.24 3.24 0.00 2.32
694 695 2.507407 AGGGGCACGAATACAATTGT 57.493 45.000 16.68 16.68 0.00 2.71
695 696 2.802719 AGGGGCACGAATACAATTGTT 58.197 42.857 17.78 0.00 0.00 2.83
696 697 2.752903 AGGGGCACGAATACAATTGTTC 59.247 45.455 17.78 8.31 0.00 3.18
697 698 2.159296 GGGGCACGAATACAATTGTTCC 60.159 50.000 17.78 5.52 0.00 3.62
698 699 2.752903 GGGCACGAATACAATTGTTCCT 59.247 45.455 17.78 1.21 0.00 3.36
699 700 3.942748 GGGCACGAATACAATTGTTCCTA 59.057 43.478 17.78 0.00 0.00 2.94
700 701 4.396790 GGGCACGAATACAATTGTTCCTAA 59.603 41.667 17.78 0.00 0.00 2.69
701 702 5.106078 GGGCACGAATACAATTGTTCCTAAA 60.106 40.000 17.78 0.00 0.00 1.85
702 703 6.405397 GGGCACGAATACAATTGTTCCTAAAT 60.405 38.462 17.78 0.00 0.00 1.40
703 704 7.033185 GGCACGAATACAATTGTTCCTAAATT 58.967 34.615 17.78 9.01 0.00 1.82
704 705 8.185505 GGCACGAATACAATTGTTCCTAAATTA 58.814 33.333 17.78 0.00 0.00 1.40
739 740 0.750850 TGCCACCGCCTAATCTCTAC 59.249 55.000 0.00 0.00 0.00 2.59
743 744 2.365617 CCACCGCCTAATCTCTACACAT 59.634 50.000 0.00 0.00 0.00 3.21
830 833 9.052759 TCAGGAAAAAGTCAAACTAGAACATAC 57.947 33.333 0.00 0.00 0.00 2.39
839 842 5.688621 TCAAACTAGAACATACACACACGAC 59.311 40.000 0.00 0.00 0.00 4.34
913 917 1.289066 CTTCGTCTCCGTTGCTCCA 59.711 57.895 0.00 0.00 35.01 3.86
916 920 1.519455 CGTCTCCGTTGCTCCATCC 60.519 63.158 0.00 0.00 0.00 3.51
952 956 0.034380 ACTCCACCACGAGCTAGCTA 60.034 55.000 19.38 0.00 32.79 3.32
1393 1441 2.407521 TGCGAGATCGATGAAGCTAC 57.592 50.000 0.54 0.00 43.02 3.58
1411 1459 6.408107 AGCTACCTTATTACTAGTTGCCTC 57.592 41.667 0.00 0.00 32.47 4.70
1417 1465 6.157994 ACCTTATTACTAGTTGCCTCCATGAA 59.842 38.462 0.00 0.00 0.00 2.57
1422 1470 4.833390 ACTAGTTGCCTCCATGAAGTAAC 58.167 43.478 0.00 0.00 0.00 2.50
1433 1481 6.128172 CCTCCATGAAGTAACAATCAGAACAC 60.128 42.308 0.00 0.00 0.00 3.32
1458 1506 6.689178 AACGATTTTGCAACATGAATGTAC 57.311 33.333 2.08 0.00 40.80 2.90
1459 1507 5.767269 ACGATTTTGCAACATGAATGTACA 58.233 33.333 2.08 0.00 40.80 2.90
1460 1508 6.212235 ACGATTTTGCAACATGAATGTACAA 58.788 32.000 2.08 2.53 40.80 2.41
1461 1509 6.699204 ACGATTTTGCAACATGAATGTACAAA 59.301 30.769 2.08 15.30 41.31 2.83
1462 1510 7.384660 ACGATTTTGCAACATGAATGTACAAAT 59.615 29.630 18.00 10.92 41.94 2.32
1463 1511 8.858186 CGATTTTGCAACATGAATGTACAAATA 58.142 29.630 18.00 12.53 41.94 1.40
1465 1513 9.709495 ATTTTGCAACATGAATGTACAAATAGT 57.291 25.926 18.00 9.83 41.94 2.12
1466 1514 8.518151 TTTGCAACATGAATGTACAAATAGTG 57.482 30.769 15.30 0.00 39.72 2.74
1467 1515 7.446001 TGCAACATGAATGTACAAATAGTGA 57.554 32.000 0.00 0.00 40.80 3.41
1468 1516 8.054152 TGCAACATGAATGTACAAATAGTGAT 57.946 30.769 0.00 0.00 40.80 3.06
1469 1517 7.969508 TGCAACATGAATGTACAAATAGTGATG 59.030 33.333 0.00 2.54 40.80 3.07
1470 1518 8.183536 GCAACATGAATGTACAAATAGTGATGA 58.816 33.333 0.00 0.00 40.80 2.92
1473 1521 9.842775 ACATGAATGTACAAATAGTGATGATCT 57.157 29.630 0.00 0.00 39.68 2.75
1479 1527 8.126871 TGTACAAATAGTGATGATCTAAACGC 57.873 34.615 0.00 0.00 0.00 4.84
1480 1528 7.979537 TGTACAAATAGTGATGATCTAAACGCT 59.020 33.333 0.00 0.00 0.00 5.07
1481 1529 7.470289 ACAAATAGTGATGATCTAAACGCTC 57.530 36.000 0.00 0.00 0.00 5.03
1482 1530 7.268586 ACAAATAGTGATGATCTAAACGCTCT 58.731 34.615 0.00 0.00 0.00 4.09
1483 1531 7.766278 ACAAATAGTGATGATCTAAACGCTCTT 59.234 33.333 0.00 0.00 0.00 2.85
1484 1532 9.249457 CAAATAGTGATGATCTAAACGCTCTTA 57.751 33.333 0.00 0.00 0.00 2.10
1485 1533 9.988815 AAATAGTGATGATCTAAACGCTCTTAT 57.011 29.630 0.00 0.00 0.00 1.73
1489 1537 9.988815 AGTGATGATCTAAACGCTCTTATATTT 57.011 29.630 0.00 0.00 0.00 1.40
1564 1612 1.754803 AGATCGACGGCTAACATTCCA 59.245 47.619 0.00 0.00 0.00 3.53
1669 1717 0.901580 ACAAGGGATTGGCTGGCAAG 60.902 55.000 21.37 9.55 0.00 4.01
1709 1757 3.450457 GTCATGATCTTGGACTGGTCTCT 59.550 47.826 0.00 0.00 0.00 3.10
1715 1763 2.920271 TCTTGGACTGGTCTCTAGAGGA 59.080 50.000 19.67 3.98 0.00 3.71
1719 1767 4.026744 TGGACTGGTCTCTAGAGGATTTG 58.973 47.826 19.67 9.02 0.00 2.32
1721 1769 4.282496 GACTGGTCTCTAGAGGATTTGGA 58.718 47.826 19.67 0.00 0.00 3.53
1722 1770 4.689062 ACTGGTCTCTAGAGGATTTGGAA 58.311 43.478 19.67 0.00 0.00 3.53
1776 1825 2.772191 TCCACCACACCTGGCTGT 60.772 61.111 0.00 0.00 42.08 4.40
1786 1839 0.857675 ACCTGGCTGTTAGGGGTTTT 59.142 50.000 0.00 0.00 39.71 2.43
1787 1840 1.256812 CCTGGCTGTTAGGGGTTTTG 58.743 55.000 0.00 0.00 0.00 2.44
1793 1846 2.162681 CTGTTAGGGGTTTTGGAGCTG 58.837 52.381 0.00 0.00 0.00 4.24
1830 1883 3.304764 GAAAAAGTCGGCCCGTCGC 62.305 63.158 1.63 0.00 0.00 5.19
1900 1953 4.142816 GGTTTTCATGGACTGATCTGTTCG 60.143 45.833 6.70 0.00 32.72 3.95
1915 1968 3.118920 TCTGTTCGGACTCACACTTTTCA 60.119 43.478 0.00 0.00 0.00 2.69
2019 2072 7.814587 CAGGTTTTTGCTTAAAAGGAGATTAGG 59.185 37.037 0.00 0.00 36.44 2.69
2036 2089 7.234577 GGAGATTAGGGTTCTCATCTTACATCT 59.765 40.741 3.39 0.00 41.16 2.90
2040 2093 5.222870 AGGGTTCTCATCTTACATCTCCAT 58.777 41.667 0.00 0.00 0.00 3.41
2249 2307 7.235399 TCAAGGCTGAATGATATGTGGAGTATA 59.765 37.037 0.00 0.00 0.00 1.47
2685 2749 4.749245 AAAGGCGTCTTTATGTTGTGAG 57.251 40.909 14.51 0.00 41.06 3.51
2822 2886 4.817517 AGATGCTGCAAAAATTTCTGGAG 58.182 39.130 6.36 8.54 34.40 3.86
2897 2961 3.049674 CTTCCTGCCGCGCTTTGA 61.050 61.111 5.56 0.00 0.00 2.69
2903 2967 4.229479 GCCGCGCTTTGAGCTAGC 62.229 66.667 6.62 6.62 39.60 3.42
3009 3073 0.040958 GTGATCAAATCGCCGATGCC 60.041 55.000 0.00 0.00 33.78 4.40
3054 3118 9.187455 GTTCTGAATATAAAGCAGCTAGTACTC 57.813 37.037 0.00 0.00 0.00 2.59
3239 3303 2.182827 AGAATGCACCTCTCTACTGCA 58.817 47.619 0.00 0.00 44.71 4.41
3276 3340 3.947196 TGTGATGACAAAGAAGTTGCAGT 59.053 39.130 0.00 0.00 41.31 4.40
3374 3438 2.412870 CGCCATCATCTACGCCAAATA 58.587 47.619 0.00 0.00 0.00 1.40
3581 3646 8.560355 TGAATTTTAAACTTCTCGATCCATGA 57.440 30.769 16.45 0.00 0.00 3.07
3596 3661 6.647895 TCGATCCATGATGTACAAATGAGATG 59.352 38.462 18.68 13.82 0.00 2.90
3762 3828 3.407424 TGATATAGATGCACCTGTGGC 57.593 47.619 0.00 0.00 0.00 5.01
3787 3854 7.274250 GCCTAAGACTTCATAAACATTTTGCAG 59.726 37.037 0.00 0.00 0.00 4.41
3791 3858 6.857964 AGACTTCATAAACATTTTGCAGAACG 59.142 34.615 0.00 0.00 0.00 3.95
3811 3893 2.926200 CGTGCATAACTGGACAGAGAAG 59.074 50.000 6.29 0.00 43.36 2.85
3816 3898 4.383552 GCATAACTGGACAGAGAAGATGGT 60.384 45.833 6.29 0.00 0.00 3.55
3819 3901 5.413309 AACTGGACAGAGAAGATGGTTAG 57.587 43.478 6.29 0.00 0.00 2.34
3840 3922 5.700402 AGGTAGAAGTTGTAGCCAATCAT 57.300 39.130 5.68 0.00 32.11 2.45
3910 3992 3.969287 TCAGTGAGCTCAGCAACTTAT 57.031 42.857 18.89 0.00 0.00 1.73
3911 3993 5.604758 ATCAGTGAGCTCAGCAACTTATA 57.395 39.130 18.89 0.00 0.00 0.98
3938 4020 5.488341 AGTTAAATAACGTCATCAGTGCCT 58.512 37.500 0.00 0.00 40.96 4.75
3948 4030 2.038952 TCATCAGTGCCTTAGTGCAAGT 59.961 45.455 0.00 0.00 44.11 3.16
3955 4037 2.553602 TGCCTTAGTGCAAGTTGACATG 59.446 45.455 7.16 0.00 38.56 3.21
4087 4170 1.601914 CCAAGCAGGTAAAAACACCGC 60.602 52.381 0.00 0.00 43.84 5.68
4091 4174 2.747446 AGCAGGTAAAAACACCGCATAG 59.253 45.455 10.24 0.00 43.84 2.23
4093 4176 3.425758 GCAGGTAAAAACACCGCATAGTC 60.426 47.826 0.00 0.00 43.84 2.59
4176 4277 4.756084 AACTGAGCTTAATTCTGCACAC 57.244 40.909 0.00 0.00 0.00 3.82
4177 4278 4.013267 ACTGAGCTTAATTCTGCACACT 57.987 40.909 0.00 0.00 0.00 3.55
4221 4322 8.067784 CACAAAGATTAGCGACTTCAAAACTTA 58.932 33.333 0.00 0.00 0.00 2.24
4268 4370 4.513692 TCCATTCGTTCACTACAAAACAGG 59.486 41.667 0.00 0.00 0.00 4.00
4275 4377 6.425721 TCGTTCACTACAAAACAGGAAATAGG 59.574 38.462 0.00 0.00 0.00 2.57
4328 4430 1.929169 CTGTCAGACACATACATGCGG 59.071 52.381 0.00 0.00 33.23 5.69
4356 4458 6.889722 AGCCTACAACCTCTAATTATGCAAAA 59.110 34.615 0.00 0.00 0.00 2.44
4357 4459 6.972901 GCCTACAACCTCTAATTATGCAAAAC 59.027 38.462 0.00 0.00 0.00 2.43
4360 4462 9.906660 CTACAACCTCTAATTATGCAAAACAAA 57.093 29.630 0.00 0.00 0.00 2.83
4363 4465 8.658609 CAACCTCTAATTATGCAAAACAAATGG 58.341 33.333 0.00 0.00 0.00 3.16
4364 4466 7.330262 ACCTCTAATTATGCAAAACAAATGGG 58.670 34.615 0.00 0.00 0.00 4.00
4365 4467 7.180051 ACCTCTAATTATGCAAAACAAATGGGA 59.820 33.333 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.026879 CTAGACGATGGCGCGCTG 61.027 66.667 32.29 19.99 42.48 5.18
8 9 2.558554 AAACTAGACGATGGCGCGCT 62.559 55.000 32.29 12.85 42.48 5.92
9 10 1.693083 AAAACTAGACGATGGCGCGC 61.693 55.000 25.94 25.94 42.48 6.86
10 11 0.297820 GAAAACTAGACGATGGCGCG 59.702 55.000 0.00 0.00 42.48 6.86
11 12 1.355971 TGAAAACTAGACGATGGCGC 58.644 50.000 0.00 0.00 42.48 6.53
12 13 4.600012 AATTGAAAACTAGACGATGGCG 57.400 40.909 0.00 0.00 44.79 5.69
62 63 1.429148 GCCACAAAGCCCGACGATAG 61.429 60.000 0.00 0.00 46.19 2.08
63 64 1.448893 GCCACAAAGCCCGACGATA 60.449 57.895 0.00 0.00 0.00 2.92
64 65 2.746277 GCCACAAAGCCCGACGAT 60.746 61.111 0.00 0.00 0.00 3.73
72 73 0.246360 ATAAAAGCCGGCCACAAAGC 59.754 50.000 26.15 0.00 0.00 3.51
73 74 1.272212 ACATAAAAGCCGGCCACAAAG 59.728 47.619 26.15 12.54 0.00 2.77
74 75 1.333177 ACATAAAAGCCGGCCACAAA 58.667 45.000 26.15 5.57 0.00 2.83
75 76 1.333177 AACATAAAAGCCGGCCACAA 58.667 45.000 26.15 7.30 0.00 3.33
76 77 1.333177 AAACATAAAAGCCGGCCACA 58.667 45.000 26.15 6.43 0.00 4.17
77 78 3.579335 TTAAACATAAAAGCCGGCCAC 57.421 42.857 26.15 0.00 0.00 5.01
78 79 4.810191 AATTAAACATAAAAGCCGGCCA 57.190 36.364 26.15 6.44 0.00 5.36
79 80 7.780008 ATTTAATTAAACATAAAAGCCGGCC 57.220 32.000 26.15 5.07 0.00 6.13
80 81 9.524106 AGTATTTAATTAAACATAAAAGCCGGC 57.476 29.630 21.89 21.89 0.00 6.13
134 135 4.352600 TTTATCGGCGCGGAAATAAAAA 57.647 36.364 22.03 13.35 0.00 1.94
135 136 4.352600 TTTTATCGGCGCGGAAATAAAA 57.647 36.364 22.03 22.20 33.46 1.52
136 137 4.352600 TTTTTATCGGCGCGGAAATAAA 57.647 36.364 22.03 18.21 0.00 1.40
137 138 4.283678 CATTTTTATCGGCGCGGAAATAA 58.716 39.130 22.03 13.52 0.00 1.40
138 139 3.304123 CCATTTTTATCGGCGCGGAAATA 60.304 43.478 22.03 7.94 0.00 1.40
139 140 2.542824 CCATTTTTATCGGCGCGGAAAT 60.543 45.455 22.03 13.45 0.00 2.17
140 141 1.202200 CCATTTTTATCGGCGCGGAAA 60.202 47.619 22.03 11.69 0.00 3.13
141 142 0.378962 CCATTTTTATCGGCGCGGAA 59.621 50.000 22.03 5.20 0.00 4.30
142 143 0.462225 TCCATTTTTATCGGCGCGGA 60.462 50.000 20.50 20.50 0.00 5.54
143 144 0.591170 ATCCATTTTTATCGGCGCGG 59.409 50.000 8.83 8.94 0.00 6.46
144 145 1.721489 CGATCCATTTTTATCGGCGCG 60.721 52.381 0.00 0.00 40.93 6.86
145 146 1.950472 CGATCCATTTTTATCGGCGC 58.050 50.000 0.00 0.00 40.93 6.53
149 150 1.196808 CGGCCCGATCCATTTTTATCG 59.803 52.381 0.00 0.00 43.53 2.92
150 151 1.539827 CCGGCCCGATCCATTTTTATC 59.460 52.381 3.71 0.00 0.00 1.75
151 152 1.133606 ACCGGCCCGATCCATTTTTAT 60.134 47.619 3.71 0.00 0.00 1.40
152 153 0.256464 ACCGGCCCGATCCATTTTTA 59.744 50.000 3.71 0.00 0.00 1.52
153 154 1.000145 ACCGGCCCGATCCATTTTT 60.000 52.632 3.71 0.00 0.00 1.94
154 155 1.752694 CACCGGCCCGATCCATTTT 60.753 57.895 3.71 0.00 0.00 1.82
155 156 2.124320 CACCGGCCCGATCCATTT 60.124 61.111 3.71 0.00 0.00 2.32
156 157 2.978946 AACACCGGCCCGATCCATT 61.979 57.895 3.71 0.00 0.00 3.16
157 158 3.407967 AACACCGGCCCGATCCAT 61.408 61.111 3.71 0.00 0.00 3.41
158 159 4.402528 CAACACCGGCCCGATCCA 62.403 66.667 3.71 0.00 0.00 3.41
186 187 3.269347 CTATCGCGTTTGGGCCGG 61.269 66.667 5.77 0.00 0.00 6.13
187 188 3.937062 GCTATCGCGTTTGGGCCG 61.937 66.667 5.77 0.00 0.00 6.13
197 198 1.343821 CACAAACGTCCGCTATCGC 59.656 57.895 0.00 0.00 0.00 4.58
198 199 1.058695 GAACACAAACGTCCGCTATCG 59.941 52.381 0.00 0.00 0.00 2.92
199 200 1.058695 CGAACACAAACGTCCGCTATC 59.941 52.381 0.00 0.00 0.00 2.08
200 201 1.065358 CGAACACAAACGTCCGCTAT 58.935 50.000 0.00 0.00 0.00 2.97
201 202 0.248990 ACGAACACAAACGTCCGCTA 60.249 50.000 0.00 0.00 38.34 4.26
202 203 1.519898 ACGAACACAAACGTCCGCT 60.520 52.632 0.00 0.00 38.34 5.52
203 204 3.008327 ACGAACACAAACGTCCGC 58.992 55.556 0.00 0.00 38.34 5.54
207 208 1.147557 GGTCCGACGAACACAAACGT 61.148 55.000 0.00 0.00 45.32 3.99
208 209 1.561250 GGTCCGACGAACACAAACG 59.439 57.895 0.00 0.00 0.00 3.60
209 210 0.871163 TCGGTCCGACGAACACAAAC 60.871 55.000 10.71 0.00 40.34 2.93
210 211 0.871163 GTCGGTCCGACGAACACAAA 60.871 55.000 27.59 0.00 46.56 2.83
211 212 1.299316 GTCGGTCCGACGAACACAA 60.299 57.895 27.59 0.00 46.56 3.33
212 213 2.332514 GTCGGTCCGACGAACACA 59.667 61.111 27.59 0.00 46.56 3.72
220 221 0.957395 GTCTGTGTAGGTCGGTCCGA 60.957 60.000 10.71 10.71 41.99 4.55
221 222 1.239296 TGTCTGTGTAGGTCGGTCCG 61.239 60.000 4.39 4.39 41.99 4.79
222 223 0.963962 TTGTCTGTGTAGGTCGGTCC 59.036 55.000 0.00 0.00 0.00 4.46
223 224 2.806608 TTTGTCTGTGTAGGTCGGTC 57.193 50.000 0.00 0.00 0.00 4.79
224 225 3.463944 CTTTTTGTCTGTGTAGGTCGGT 58.536 45.455 0.00 0.00 0.00 4.69
225 226 2.223377 GCTTTTTGTCTGTGTAGGTCGG 59.777 50.000 0.00 0.00 0.00 4.79
226 227 2.096909 CGCTTTTTGTCTGTGTAGGTCG 60.097 50.000 0.00 0.00 0.00 4.79
227 228 2.349532 GCGCTTTTTGTCTGTGTAGGTC 60.350 50.000 0.00 0.00 0.00 3.85
228 229 1.602377 GCGCTTTTTGTCTGTGTAGGT 59.398 47.619 0.00 0.00 0.00 3.08
229 230 1.601903 TGCGCTTTTTGTCTGTGTAGG 59.398 47.619 9.73 0.00 0.00 3.18
230 231 3.542712 ATGCGCTTTTTGTCTGTGTAG 57.457 42.857 9.73 0.00 0.00 2.74
231 232 5.425577 TTTATGCGCTTTTTGTCTGTGTA 57.574 34.783 9.73 0.00 0.00 2.90
232 233 3.980646 TTATGCGCTTTTTGTCTGTGT 57.019 38.095 9.73 0.00 0.00 3.72
233 234 5.633996 TTTTTATGCGCTTTTTGTCTGTG 57.366 34.783 9.73 0.00 0.00 3.66
234 235 5.333263 GCATTTTTATGCGCTTTTTGTCTGT 60.333 36.000 9.73 0.00 37.84 3.41
235 236 5.074791 GCATTTTTATGCGCTTTTTGTCTG 58.925 37.500 9.73 0.00 37.84 3.51
236 237 5.268107 GCATTTTTATGCGCTTTTTGTCT 57.732 34.783 9.73 0.00 37.84 3.41
247 248 2.271821 AACGGACGGCATTTTTATGC 57.728 45.000 0.00 1.58 46.27 3.14
248 249 2.920490 CCAAACGGACGGCATTTTTATG 59.080 45.455 0.00 0.00 0.00 1.90
249 250 2.094442 CCCAAACGGACGGCATTTTTAT 60.094 45.455 0.00 0.00 0.00 1.40
250 251 1.269998 CCCAAACGGACGGCATTTTTA 59.730 47.619 0.00 0.00 0.00 1.52
251 252 0.032815 CCCAAACGGACGGCATTTTT 59.967 50.000 0.00 0.00 0.00 1.94
252 253 1.110518 ACCCAAACGGACGGCATTTT 61.111 50.000 0.00 0.00 34.64 1.82
253 254 1.520600 GACCCAAACGGACGGCATTT 61.521 55.000 0.00 0.00 34.64 2.32
254 255 1.969589 GACCCAAACGGACGGCATT 60.970 57.895 0.00 0.00 34.64 3.56
255 256 2.359478 GACCCAAACGGACGGCAT 60.359 61.111 0.00 0.00 34.64 4.40
256 257 4.973055 CGACCCAAACGGACGGCA 62.973 66.667 0.00 0.00 44.72 5.69
260 261 2.422591 TGGACGACCCAAACGGAC 59.577 61.111 0.34 0.00 43.29 4.79
268 269 0.521735 GCAACTTCAATGGACGACCC 59.478 55.000 0.34 0.00 34.81 4.46
269 270 1.464997 GAGCAACTTCAATGGACGACC 59.535 52.381 0.00 0.00 0.00 4.79
270 271 2.417719 AGAGCAACTTCAATGGACGAC 58.582 47.619 0.00 0.00 0.00 4.34
271 272 2.839486 AGAGCAACTTCAATGGACGA 57.161 45.000 0.00 0.00 0.00 4.20
272 273 5.122239 TCAATAAGAGCAACTTCAATGGACG 59.878 40.000 0.00 0.00 39.72 4.79
273 274 6.500684 TCAATAAGAGCAACTTCAATGGAC 57.499 37.500 0.00 0.00 39.72 4.02
274 275 7.707624 AATCAATAAGAGCAACTTCAATGGA 57.292 32.000 0.00 0.00 39.72 3.41
275 276 8.680903 ACTAATCAATAAGAGCAACTTCAATGG 58.319 33.333 0.00 0.00 39.72 3.16
278 279 9.283768 TCAACTAATCAATAAGAGCAACTTCAA 57.716 29.630 0.00 0.00 39.72 2.69
279 280 8.846943 TCAACTAATCAATAAGAGCAACTTCA 57.153 30.769 0.00 0.00 39.72 3.02
351 352 3.620427 TGATAGGGCACAAACGTGTAT 57.380 42.857 0.00 0.00 35.72 2.29
385 386 4.083003 CCCTTTAATTTACGAGTTGCTGCA 60.083 41.667 0.00 0.00 0.00 4.41
386 387 4.155280 TCCCTTTAATTTACGAGTTGCTGC 59.845 41.667 0.00 0.00 0.00 5.25
387 388 5.873179 TCCCTTTAATTTACGAGTTGCTG 57.127 39.130 0.00 0.00 0.00 4.41
388 389 7.462571 AAATCCCTTTAATTTACGAGTTGCT 57.537 32.000 0.00 0.00 0.00 3.91
389 390 8.432359 CAAAAATCCCTTTAATTTACGAGTTGC 58.568 33.333 0.00 0.00 0.00 4.17
402 403 8.454570 GGGATACGAATACAAAAATCCCTTTA 57.545 34.615 10.33 0.00 46.08 1.85
403 404 7.342769 GGGATACGAATACAAAAATCCCTTT 57.657 36.000 10.33 0.00 46.08 3.11
404 405 6.954487 GGGATACGAATACAAAAATCCCTT 57.046 37.500 10.33 0.00 46.08 3.95
407 408 8.557029 CAACTAGGGATACGAATACAAAAATCC 58.443 37.037 0.00 0.00 33.59 3.01
408 409 8.557029 CCAACTAGGGATACGAATACAAAAATC 58.443 37.037 0.00 0.00 37.60 2.17
409 410 8.446599 CCAACTAGGGATACGAATACAAAAAT 57.553 34.615 0.00 0.00 37.60 1.82
410 411 7.852971 CCAACTAGGGATACGAATACAAAAA 57.147 36.000 0.00 0.00 37.60 1.94
426 427 1.153823 CGAGCGTGACCCAACTAGG 60.154 63.158 0.00 0.00 37.03 3.02
427 428 0.456312 GTCGAGCGTGACCCAACTAG 60.456 60.000 0.40 0.00 32.61 2.57
428 429 0.892358 AGTCGAGCGTGACCCAACTA 60.892 55.000 7.62 0.00 39.77 2.24
429 430 2.201022 AGTCGAGCGTGACCCAACT 61.201 57.895 7.62 0.00 39.77 3.16
430 431 2.022129 CAGTCGAGCGTGACCCAAC 61.022 63.158 7.62 0.00 39.77 3.77
431 432 1.532604 ATCAGTCGAGCGTGACCCAA 61.533 55.000 7.62 0.00 39.77 4.12
432 433 1.532604 AATCAGTCGAGCGTGACCCA 61.533 55.000 7.62 0.00 39.77 4.51
433 434 0.389948 AAATCAGTCGAGCGTGACCC 60.390 55.000 7.62 0.00 39.77 4.46
434 435 0.716108 CAAATCAGTCGAGCGTGACC 59.284 55.000 7.62 0.00 39.77 4.02
435 436 0.093705 GCAAATCAGTCGAGCGTGAC 59.906 55.000 3.48 3.48 39.21 3.67
436 437 1.014044 GGCAAATCAGTCGAGCGTGA 61.014 55.000 0.00 0.00 0.00 4.35
437 438 1.421485 GGCAAATCAGTCGAGCGTG 59.579 57.895 0.00 0.00 0.00 5.34
438 439 1.741770 GGGCAAATCAGTCGAGCGT 60.742 57.895 0.00 0.00 0.00 5.07
439 440 2.464459 GGGGCAAATCAGTCGAGCG 61.464 63.158 0.00 0.00 0.00 5.03
440 441 0.178068 TAGGGGCAAATCAGTCGAGC 59.822 55.000 0.00 0.00 0.00 5.03
441 442 2.918712 ATAGGGGCAAATCAGTCGAG 57.081 50.000 0.00 0.00 0.00 4.04
442 443 3.644966 AAATAGGGGCAAATCAGTCGA 57.355 42.857 0.00 0.00 0.00 4.20
443 444 4.718940 AAAAATAGGGGCAAATCAGTCG 57.281 40.909 0.00 0.00 0.00 4.18
461 462 9.250624 CTGGACAAAACCGTAATTATTGAAAAA 57.749 29.630 3.38 0.00 0.00 1.94
462 463 7.382759 GCTGGACAAAACCGTAATTATTGAAAA 59.617 33.333 3.38 0.00 0.00 2.29
463 464 6.864165 GCTGGACAAAACCGTAATTATTGAAA 59.136 34.615 3.38 0.00 0.00 2.69
464 465 6.207810 AGCTGGACAAAACCGTAATTATTGAA 59.792 34.615 3.38 0.00 0.00 2.69
465 466 5.708230 AGCTGGACAAAACCGTAATTATTGA 59.292 36.000 3.38 0.00 0.00 2.57
466 467 5.949735 AGCTGGACAAAACCGTAATTATTG 58.050 37.500 0.00 0.00 0.00 1.90
467 468 5.708230 TGAGCTGGACAAAACCGTAATTATT 59.292 36.000 0.00 0.00 0.00 1.40
468 469 5.123344 GTGAGCTGGACAAAACCGTAATTAT 59.877 40.000 0.00 0.00 0.00 1.28
469 470 4.453136 GTGAGCTGGACAAAACCGTAATTA 59.547 41.667 0.00 0.00 0.00 1.40
470 471 3.252458 GTGAGCTGGACAAAACCGTAATT 59.748 43.478 0.00 0.00 0.00 1.40
471 472 2.812011 GTGAGCTGGACAAAACCGTAAT 59.188 45.455 0.00 0.00 0.00 1.89
472 473 2.158871 AGTGAGCTGGACAAAACCGTAA 60.159 45.455 0.00 0.00 0.00 3.18
473 474 1.414919 AGTGAGCTGGACAAAACCGTA 59.585 47.619 0.00 0.00 0.00 4.02
474 475 0.180406 AGTGAGCTGGACAAAACCGT 59.820 50.000 0.00 0.00 0.00 4.83
475 476 1.264288 GAAGTGAGCTGGACAAAACCG 59.736 52.381 0.00 0.00 0.00 4.44
476 477 2.033424 GTGAAGTGAGCTGGACAAAACC 59.967 50.000 0.00 0.00 0.00 3.27
477 478 2.945668 AGTGAAGTGAGCTGGACAAAAC 59.054 45.455 0.00 0.00 0.00 2.43
478 479 3.206150 GAGTGAAGTGAGCTGGACAAAA 58.794 45.455 0.00 0.00 0.00 2.44
479 480 2.803133 CGAGTGAAGTGAGCTGGACAAA 60.803 50.000 0.00 0.00 0.00 2.83
480 481 1.269778 CGAGTGAAGTGAGCTGGACAA 60.270 52.381 0.00 0.00 0.00 3.18
481 482 0.315251 CGAGTGAAGTGAGCTGGACA 59.685 55.000 0.00 0.00 0.00 4.02
482 483 1.011451 GCGAGTGAAGTGAGCTGGAC 61.011 60.000 0.00 0.00 0.00 4.02
483 484 1.290324 GCGAGTGAAGTGAGCTGGA 59.710 57.895 0.00 0.00 0.00 3.86
484 485 1.739562 GGCGAGTGAAGTGAGCTGG 60.740 63.158 0.00 0.00 0.00 4.85
485 486 0.320247 AAGGCGAGTGAAGTGAGCTG 60.320 55.000 0.00 0.00 0.00 4.24
486 487 0.320247 CAAGGCGAGTGAAGTGAGCT 60.320 55.000 0.00 0.00 0.00 4.09
487 488 0.601311 ACAAGGCGAGTGAAGTGAGC 60.601 55.000 0.00 0.00 0.00 4.26
488 489 1.143305 CACAAGGCGAGTGAAGTGAG 58.857 55.000 6.52 0.00 39.30 3.51
489 490 0.464036 ACACAAGGCGAGTGAAGTGA 59.536 50.000 17.14 0.00 40.16 3.41
490 491 1.299541 AACACAAGGCGAGTGAAGTG 58.700 50.000 17.14 0.00 40.16 3.16
491 492 2.038387 AAACACAAGGCGAGTGAAGT 57.962 45.000 17.14 2.29 40.16 3.01
492 493 3.108144 CAAAAACACAAGGCGAGTGAAG 58.892 45.455 17.14 1.76 40.16 3.02
493 494 2.733858 GCAAAAACACAAGGCGAGTGAA 60.734 45.455 17.14 0.00 40.16 3.18
494 495 1.202245 GCAAAAACACAAGGCGAGTGA 60.202 47.619 17.14 0.00 40.16 3.41
495 496 1.199624 GCAAAAACACAAGGCGAGTG 58.800 50.000 10.18 10.18 42.56 3.51
496 497 0.102300 GGCAAAAACACAAGGCGAGT 59.898 50.000 0.00 0.00 0.00 4.18
497 498 0.385390 AGGCAAAAACACAAGGCGAG 59.615 50.000 0.00 0.00 0.00 5.03
498 499 0.820871 AAGGCAAAAACACAAGGCGA 59.179 45.000 0.00 0.00 0.00 5.54
499 500 1.592543 GAAAGGCAAAAACACAAGGCG 59.407 47.619 0.00 0.00 0.00 5.52
500 501 1.939934 GGAAAGGCAAAAACACAAGGC 59.060 47.619 0.00 0.00 0.00 4.35
501 502 2.200899 CGGAAAGGCAAAAACACAAGG 58.799 47.619 0.00 0.00 0.00 3.61
502 503 2.200899 CCGGAAAGGCAAAAACACAAG 58.799 47.619 0.00 0.00 0.00 3.16
503 504 1.134670 CCCGGAAAGGCAAAAACACAA 60.135 47.619 0.73 0.00 39.21 3.33
504 505 0.461961 CCCGGAAAGGCAAAAACACA 59.538 50.000 0.73 0.00 39.21 3.72
505 506 0.747852 TCCCGGAAAGGCAAAAACAC 59.252 50.000 0.73 0.00 39.21 3.32
506 507 1.342819 CATCCCGGAAAGGCAAAAACA 59.657 47.619 0.73 0.00 39.21 2.83
507 508 1.337728 CCATCCCGGAAAGGCAAAAAC 60.338 52.381 0.73 0.00 39.21 2.43
508 509 0.972883 CCATCCCGGAAAGGCAAAAA 59.027 50.000 0.73 0.00 39.21 1.94
509 510 0.178947 ACCATCCCGGAAAGGCAAAA 60.179 50.000 0.73 0.00 39.21 2.44
510 511 0.178947 AACCATCCCGGAAAGGCAAA 60.179 50.000 0.73 0.00 39.21 3.68
511 512 0.610785 GAACCATCCCGGAAAGGCAA 60.611 55.000 0.73 0.00 39.21 4.52
512 513 1.001393 GAACCATCCCGGAAAGGCA 60.001 57.895 0.73 0.00 39.21 4.75
513 514 1.032114 CAGAACCATCCCGGAAAGGC 61.032 60.000 0.73 0.00 39.21 4.35
514 515 0.618458 TCAGAACCATCCCGGAAAGG 59.382 55.000 0.73 3.31 38.63 3.11
515 516 1.679032 GGTCAGAACCATCCCGGAAAG 60.679 57.143 0.73 0.00 45.68 2.62
516 517 0.326927 GGTCAGAACCATCCCGGAAA 59.673 55.000 0.73 0.00 45.68 3.13
517 518 1.988015 GGTCAGAACCATCCCGGAA 59.012 57.895 0.73 0.00 45.68 4.30
518 519 3.721868 GGTCAGAACCATCCCGGA 58.278 61.111 0.73 0.00 45.68 5.14
526 527 2.079925 GACTGCTCATTGGTCAGAACC 58.920 52.381 11.29 0.00 46.66 3.62
527 528 1.728971 CGACTGCTCATTGGTCAGAAC 59.271 52.381 11.29 0.00 0.00 3.01
528 529 1.941209 GCGACTGCTCATTGGTCAGAA 60.941 52.381 11.29 0.00 38.39 3.02
529 530 0.390340 GCGACTGCTCATTGGTCAGA 60.390 55.000 11.29 0.00 38.39 3.27
530 531 1.364626 GGCGACTGCTCATTGGTCAG 61.365 60.000 0.00 5.07 42.25 3.51
531 532 1.375908 GGCGACTGCTCATTGGTCA 60.376 57.895 0.00 0.00 42.25 4.02
532 533 1.375908 TGGCGACTGCTCATTGGTC 60.376 57.895 0.00 0.00 42.25 4.02
533 534 1.672356 GTGGCGACTGCTCATTGGT 60.672 57.895 0.00 0.00 42.25 3.67
534 535 2.743752 CGTGGCGACTGCTCATTGG 61.744 63.158 0.00 0.00 42.25 3.16
535 536 2.029288 ACGTGGCGACTGCTCATTG 61.029 57.895 0.00 0.00 42.25 2.82
536 537 2.029288 CACGTGGCGACTGCTCATT 61.029 57.895 7.95 0.00 42.25 2.57
537 538 2.433145 CACGTGGCGACTGCTCAT 60.433 61.111 7.95 0.00 42.25 2.90
538 539 4.662961 CCACGTGGCGACTGCTCA 62.663 66.667 24.02 0.00 42.25 4.26
550 551 2.029964 AATCACGGTTCGCCACGT 59.970 55.556 0.00 0.00 45.25 4.49
551 552 2.474266 CAATCACGGTTCGCCACG 59.526 61.111 0.00 0.00 37.00 4.94
552 553 1.908066 GACCAATCACGGTTCGCCAC 61.908 60.000 0.00 0.00 40.22 5.01
553 554 1.669760 GACCAATCACGGTTCGCCA 60.670 57.895 0.00 0.00 40.22 5.69
554 555 2.736682 CGACCAATCACGGTTCGCC 61.737 63.158 0.00 0.00 40.22 5.54
555 556 2.736682 CCGACCAATCACGGTTCGC 61.737 63.158 0.00 0.00 43.53 4.70
556 557 3.470267 CCGACCAATCACGGTTCG 58.530 61.111 0.00 0.00 43.53 3.95
559 560 2.775032 CGGTTCCGACCAATCACGGT 62.775 60.000 5.19 0.00 46.91 4.83
560 561 2.098233 CGGTTCCGACCAATCACGG 61.098 63.158 5.19 0.00 46.91 4.94
561 562 2.736682 GCGGTTCCGACCAATCACG 61.737 63.158 15.69 0.00 46.91 4.35
562 563 2.396157 GGCGGTTCCGACCAATCAC 61.396 63.158 15.69 0.00 46.91 3.06
563 564 2.046700 GGCGGTTCCGACCAATCA 60.047 61.111 15.69 0.00 46.91 2.57
569 570 3.952628 CTTCTGGGGCGGTTCCGAC 62.953 68.421 15.69 12.36 36.62 4.79
570 571 3.702048 CTTCTGGGGCGGTTCCGA 61.702 66.667 15.69 0.00 34.94 4.55
571 572 4.778143 CCTTCTGGGGCGGTTCCG 62.778 72.222 6.90 6.90 34.94 4.30
581 582 2.102925 ACATGTGTTTTTGCCCTTCTGG 59.897 45.455 0.00 0.00 37.09 3.86
582 583 3.181477 TGACATGTGTTTTTGCCCTTCTG 60.181 43.478 1.15 0.00 0.00 3.02
583 584 3.030291 TGACATGTGTTTTTGCCCTTCT 58.970 40.909 1.15 0.00 0.00 2.85
584 585 3.451141 TGACATGTGTTTTTGCCCTTC 57.549 42.857 1.15 0.00 0.00 3.46
585 586 3.197549 ACTTGACATGTGTTTTTGCCCTT 59.802 39.130 1.15 0.00 0.00 3.95
586 587 2.765699 ACTTGACATGTGTTTTTGCCCT 59.234 40.909 1.15 0.00 0.00 5.19
587 588 2.865551 CACTTGACATGTGTTTTTGCCC 59.134 45.455 1.15 0.00 0.00 5.36
588 589 3.779759 TCACTTGACATGTGTTTTTGCC 58.220 40.909 18.05 0.00 36.83 4.52
589 590 4.864247 ACTTCACTTGACATGTGTTTTTGC 59.136 37.500 18.05 0.00 36.83 3.68
590 591 6.092092 TCACTTCACTTGACATGTGTTTTTG 58.908 36.000 18.05 12.26 36.83 2.44
591 592 6.071952 ACTCACTTCACTTGACATGTGTTTTT 60.072 34.615 18.05 2.82 36.83 1.94
592 593 5.415701 ACTCACTTCACTTGACATGTGTTTT 59.584 36.000 18.05 4.25 36.83 2.43
593 594 4.943705 ACTCACTTCACTTGACATGTGTTT 59.056 37.500 18.05 4.54 36.83 2.83
594 595 4.517285 ACTCACTTCACTTGACATGTGTT 58.483 39.130 18.05 4.83 36.83 3.32
595 596 4.142609 ACTCACTTCACTTGACATGTGT 57.857 40.909 18.05 0.00 36.83 3.72
596 597 4.260907 CCAACTCACTTCACTTGACATGTG 60.261 45.833 1.15 13.85 36.82 3.21
597 598 3.879295 CCAACTCACTTCACTTGACATGT 59.121 43.478 0.00 0.00 0.00 3.21
598 599 3.251729 CCCAACTCACTTCACTTGACATG 59.748 47.826 0.00 0.00 0.00 3.21
599 600 3.480470 CCCAACTCACTTCACTTGACAT 58.520 45.455 0.00 0.00 0.00 3.06
600 601 2.917933 CCCAACTCACTTCACTTGACA 58.082 47.619 0.00 0.00 0.00 3.58
601 602 1.604278 GCCCAACTCACTTCACTTGAC 59.396 52.381 0.00 0.00 0.00 3.18
602 603 1.211703 TGCCCAACTCACTTCACTTGA 59.788 47.619 0.00 0.00 0.00 3.02
603 604 1.679139 TGCCCAACTCACTTCACTTG 58.321 50.000 0.00 0.00 0.00 3.16
604 605 2.435372 TTGCCCAACTCACTTCACTT 57.565 45.000 0.00 0.00 0.00 3.16
605 606 2.427095 GTTTTGCCCAACTCACTTCACT 59.573 45.455 0.00 0.00 0.00 3.41
606 607 2.481276 GGTTTTGCCCAACTCACTTCAC 60.481 50.000 0.00 0.00 0.00 3.18
607 608 1.754226 GGTTTTGCCCAACTCACTTCA 59.246 47.619 0.00 0.00 0.00 3.02
608 609 1.269051 CGGTTTTGCCCAACTCACTTC 60.269 52.381 0.00 0.00 0.00 3.01
609 610 0.744281 CGGTTTTGCCCAACTCACTT 59.256 50.000 0.00 0.00 0.00 3.16
610 611 0.395173 ACGGTTTTGCCCAACTCACT 60.395 50.000 0.00 0.00 0.00 3.41
611 612 1.310904 TACGGTTTTGCCCAACTCAC 58.689 50.000 0.00 0.00 0.00 3.51
612 613 2.054232 TTACGGTTTTGCCCAACTCA 57.946 45.000 0.00 0.00 0.00 3.41
613 614 3.313690 CAATTACGGTTTTGCCCAACTC 58.686 45.455 0.00 0.00 0.00 3.01
614 615 2.547007 GCAATTACGGTTTTGCCCAACT 60.547 45.455 14.17 0.00 41.82 3.16
615 616 1.795872 GCAATTACGGTTTTGCCCAAC 59.204 47.619 14.17 0.00 41.82 3.77
616 617 2.156343 GCAATTACGGTTTTGCCCAA 57.844 45.000 14.17 0.00 41.82 4.12
617 618 3.896317 GCAATTACGGTTTTGCCCA 57.104 47.368 14.17 0.00 41.82 5.36
620 621 5.396750 TTTTTCAGCAATTACGGTTTTGC 57.603 34.783 16.27 16.27 46.68 3.68
639 640 5.163550 GCTCGACTAATTTGCCCCTATTTTT 60.164 40.000 0.00 0.00 0.00 1.94
640 641 4.338400 GCTCGACTAATTTGCCCCTATTTT 59.662 41.667 0.00 0.00 0.00 1.82
641 642 3.883489 GCTCGACTAATTTGCCCCTATTT 59.117 43.478 0.00 0.00 0.00 1.40
642 643 3.477530 GCTCGACTAATTTGCCCCTATT 58.522 45.455 0.00 0.00 0.00 1.73
643 644 2.548067 CGCTCGACTAATTTGCCCCTAT 60.548 50.000 0.00 0.00 0.00 2.57
644 645 1.202486 CGCTCGACTAATTTGCCCCTA 60.202 52.381 0.00 0.00 0.00 3.53
645 646 0.462047 CGCTCGACTAATTTGCCCCT 60.462 55.000 0.00 0.00 0.00 4.79
646 647 0.743345 ACGCTCGACTAATTTGCCCC 60.743 55.000 0.00 0.00 0.00 5.80
647 648 0.373716 CACGCTCGACTAATTTGCCC 59.626 55.000 0.00 0.00 0.00 5.36
648 649 1.060698 GTCACGCTCGACTAATTTGCC 59.939 52.381 0.00 0.00 32.92 4.52
649 650 1.060698 GGTCACGCTCGACTAATTTGC 59.939 52.381 0.00 0.00 36.12 3.68
650 651 1.659098 GGGTCACGCTCGACTAATTTG 59.341 52.381 0.00 0.00 36.12 2.32
651 652 1.274167 TGGGTCACGCTCGACTAATTT 59.726 47.619 0.00 0.00 36.12 1.82
652 653 0.892755 TGGGTCACGCTCGACTAATT 59.107 50.000 0.00 0.00 36.12 1.40
653 654 0.892755 TTGGGTCACGCTCGACTAAT 59.107 50.000 0.00 0.00 36.12 1.73
654 655 0.038892 GTTGGGTCACGCTCGACTAA 60.039 55.000 0.00 0.00 36.12 2.24
655 656 0.892358 AGTTGGGTCACGCTCGACTA 60.892 55.000 0.00 0.00 40.49 2.59
656 657 0.892358 TAGTTGGGTCACGCTCGACT 60.892 55.000 0.00 0.00 44.37 4.18
657 658 0.456312 CTAGTTGGGTCACGCTCGAC 60.456 60.000 0.00 0.00 35.03 4.20
658 659 1.592400 CCTAGTTGGGTCACGCTCGA 61.592 60.000 0.00 0.00 0.00 4.04
659 660 1.153823 CCTAGTTGGGTCACGCTCG 60.154 63.158 0.00 0.00 0.00 5.03
660 661 4.913126 CCTAGTTGGGTCACGCTC 57.087 61.111 0.00 0.00 0.00 5.03
669 670 1.208535 TGTATTCGTGCCCCTAGTTGG 59.791 52.381 0.00 0.00 0.00 3.77
670 671 2.684001 TGTATTCGTGCCCCTAGTTG 57.316 50.000 0.00 0.00 0.00 3.16
671 672 3.926058 ATTGTATTCGTGCCCCTAGTT 57.074 42.857 0.00 0.00 0.00 2.24
672 673 3.054655 ACAATTGTATTCGTGCCCCTAGT 60.055 43.478 9.97 0.00 0.00 2.57
673 674 3.541632 ACAATTGTATTCGTGCCCCTAG 58.458 45.455 9.97 0.00 0.00 3.02
674 675 3.637911 ACAATTGTATTCGTGCCCCTA 57.362 42.857 9.97 0.00 0.00 3.53
675 676 2.507407 ACAATTGTATTCGTGCCCCT 57.493 45.000 9.97 0.00 0.00 4.79
676 677 2.159296 GGAACAATTGTATTCGTGCCCC 60.159 50.000 12.39 0.00 0.00 5.80
677 678 2.752903 AGGAACAATTGTATTCGTGCCC 59.247 45.455 12.39 3.76 0.00 5.36
678 679 5.554822 TTAGGAACAATTGTATTCGTGCC 57.445 39.130 12.39 5.26 0.00 5.01
679 680 9.562583 TTAATTTAGGAACAATTGTATTCGTGC 57.437 29.630 12.39 0.70 0.00 5.34
700 701 8.860088 GGTGGCATATTCTGATACCTTTTAATT 58.140 33.333 0.00 0.00 32.57 1.40
701 702 7.174946 CGGTGGCATATTCTGATACCTTTTAAT 59.825 37.037 0.00 0.00 32.92 1.40
702 703 6.485313 CGGTGGCATATTCTGATACCTTTTAA 59.515 38.462 0.00 0.00 32.92 1.52
703 704 5.995282 CGGTGGCATATTCTGATACCTTTTA 59.005 40.000 0.00 0.00 32.92 1.52
704 705 4.821805 CGGTGGCATATTCTGATACCTTTT 59.178 41.667 0.00 0.00 32.92 2.27
830 833 3.238497 TGGAGGGGGTCGTGTGTG 61.238 66.667 0.00 0.00 0.00 3.82
913 917 1.238615 ATGGAGCTTGGGAATGGGAT 58.761 50.000 0.00 0.00 0.00 3.85
916 920 2.487986 GGAGTATGGAGCTTGGGAATGG 60.488 54.545 0.00 0.00 0.00 3.16
952 956 1.261480 CCTGACAGGACAGCAGTACT 58.739 55.000 17.22 0.00 40.47 2.73
1012 1016 2.651361 GCGATGATCGTCCCGGAT 59.349 61.111 16.83 0.00 42.81 4.18
1411 1459 6.808008 AGTGTTCTGATTGTTACTTCATGG 57.192 37.500 0.00 0.00 0.00 3.66
1417 1465 8.603242 AAATCGTTAGTGTTCTGATTGTTACT 57.397 30.769 0.00 0.00 30.23 2.24
1422 1470 6.142139 TGCAAAATCGTTAGTGTTCTGATTG 58.858 36.000 0.00 0.00 30.23 2.67
1433 1481 6.932901 ACATTCATGTTGCAAAATCGTTAG 57.067 33.333 0.00 0.00 37.90 2.34
1458 1506 7.706281 AGAGCGTTTAGATCATCACTATTTG 57.294 36.000 0.00 0.00 37.82 2.32
1459 1507 9.988815 ATAAGAGCGTTTAGATCATCACTATTT 57.011 29.630 0.00 0.00 37.82 1.40
1463 1511 9.988815 AAATATAAGAGCGTTTAGATCATCACT 57.011 29.630 0.00 0.00 37.82 3.41
1489 1537 8.744568 TTTAACTTTTACTCCCTCCGTAAAAA 57.255 30.769 8.76 0.00 42.71 1.94
1490 1538 8.744568 TTTTAACTTTTACTCCCTCCGTAAAA 57.255 30.769 7.58 7.58 41.74 1.52
1491 1539 8.744568 TTTTTAACTTTTACTCCCTCCGTAAA 57.255 30.769 0.00 0.00 35.65 2.01
1492 1540 7.992608 ACTTTTTAACTTTTACTCCCTCCGTAA 59.007 33.333 0.00 0.00 0.00 3.18
1493 1541 7.508687 ACTTTTTAACTTTTACTCCCTCCGTA 58.491 34.615 0.00 0.00 0.00 4.02
1494 1542 6.359804 ACTTTTTAACTTTTACTCCCTCCGT 58.640 36.000 0.00 0.00 0.00 4.69
1495 1543 6.872628 ACTTTTTAACTTTTACTCCCTCCG 57.127 37.500 0.00 0.00 0.00 4.63
1496 1544 9.347240 AGTAACTTTTTAACTTTTACTCCCTCC 57.653 33.333 0.00 0.00 28.91 4.30
1498 1546 9.128404 CCAGTAACTTTTTAACTTTTACTCCCT 57.872 33.333 0.00 0.00 31.98 4.20
1499 1547 8.906867 ACCAGTAACTTTTTAACTTTTACTCCC 58.093 33.333 0.00 0.00 31.98 4.30
1527 1575 5.345202 GTCGATCTTAACGTGACACTTTGAT 59.655 40.000 7.53 3.02 0.00 2.57
1564 1612 7.107542 TCTACTGTGTTCTTACCAACTGTTTT 58.892 34.615 0.00 0.00 0.00 2.43
1622 1670 2.342650 CGTTGCTGGGACCCATTGG 61.343 63.158 15.39 3.40 30.82 3.16
1623 1671 1.178534 AACGTTGCTGGGACCCATTG 61.179 55.000 15.39 4.26 30.82 2.82
1624 1672 0.893727 GAACGTTGCTGGGACCCATT 60.894 55.000 15.39 3.72 30.82 3.16
1625 1673 1.303317 GAACGTTGCTGGGACCCAT 60.303 57.895 15.39 0.00 30.82 4.00
1626 1674 2.112297 GAACGTTGCTGGGACCCA 59.888 61.111 14.08 14.08 0.00 4.51
1627 1675 2.112297 TGAACGTTGCTGGGACCC 59.888 61.111 5.00 2.45 0.00 4.46
1628 1676 0.889186 ATGTGAACGTTGCTGGGACC 60.889 55.000 5.00 0.00 0.00 4.46
1669 1717 1.334384 ACCTTGTTTGCAACCACCCC 61.334 55.000 0.00 0.00 0.00 4.95
1693 1741 3.529734 TCCTCTAGAGACCAGTCCAAGAT 59.470 47.826 21.76 0.00 0.00 2.40
1709 1757 8.501904 TCCAATCATACAATTCCAAATCCTCTA 58.498 33.333 0.00 0.00 0.00 2.43
1715 1763 9.657419 GAAAGTTCCAATCATACAATTCCAAAT 57.343 29.630 0.00 0.00 0.00 2.32
1719 1767 9.143631 CTTTGAAAGTTCCAATCATACAATTCC 57.856 33.333 0.00 0.00 0.00 3.01
1721 1769 7.603784 GCCTTTGAAAGTTCCAATCATACAATT 59.396 33.333 4.02 0.00 0.00 2.32
1722 1770 7.099120 GCCTTTGAAAGTTCCAATCATACAAT 58.901 34.615 4.02 0.00 0.00 2.71
1776 1825 0.251608 GGCAGCTCCAAAACCCCTAA 60.252 55.000 0.00 0.00 34.01 2.69
1786 1839 0.901827 TATTCTTCACGGCAGCTCCA 59.098 50.000 0.00 0.00 34.01 3.86
1787 1840 1.666189 GTTATTCTTCACGGCAGCTCC 59.334 52.381 0.00 0.00 0.00 4.70
1793 1846 4.593597 TTCAATCGTTATTCTTCACGGC 57.406 40.909 0.00 0.00 37.02 5.68
1830 1883 1.150567 CTTCCTCGATTGCAGCTCCG 61.151 60.000 0.00 0.00 0.00 4.63
1915 1968 8.693625 GTCCACCTAGTCAGTATAATTAACACT 58.306 37.037 0.00 0.00 0.00 3.55
1999 2052 7.238710 AGAACCCTAATCTCCTTTTAAGCAAA 58.761 34.615 0.00 0.00 0.00 3.68
2019 2072 7.872113 AAAATGGAGATGTAAGATGAGAACC 57.128 36.000 0.00 0.00 0.00 3.62
2055 2110 7.161404 TGTGGCTATCATTGGACATATACTTC 58.839 38.462 0.00 0.00 0.00 3.01
2061 2116 5.593909 CCTTTTGTGGCTATCATTGGACATA 59.406 40.000 0.00 0.00 0.00 2.29
2298 2359 1.202463 ACATCAGAGACTGGTATGCGC 60.202 52.381 0.00 0.00 31.51 6.09
2685 2749 1.825090 TGCCACATGTGTCAGATTCC 58.175 50.000 23.79 3.25 0.00 3.01
2796 2860 5.336531 CCAGAAATTTTTGCAGCATCTCTCT 60.337 40.000 0.00 0.00 0.00 3.10
2822 2886 0.040958 CCTGAAAGTTGCGACAGTGC 60.041 55.000 6.90 0.00 0.00 4.40
2897 2961 1.440893 CGTCCAGATGCTGCTAGCT 59.559 57.895 17.23 0.00 42.97 3.32
2903 2967 0.813184 AATTTGGCGTCCAGATGCTG 59.187 50.000 11.42 0.00 42.72 4.41
3009 3073 1.135083 ACAGGGATAAGTTCAGCGACG 60.135 52.381 0.00 0.00 0.00 5.12
3054 3118 3.209266 GTTGGATTTTGCAACCCCG 57.791 52.632 0.00 0.00 41.94 5.73
3152 3216 7.807907 CCTGTGTCCATTCAAAATTAAGTACAC 59.192 37.037 0.00 0.00 35.31 2.90
3239 3303 6.057533 TGTCATCACAGACAATCTTGACTTT 58.942 36.000 8.90 0.00 44.92 2.66
3276 3340 4.819761 GATCAGCAGCCGTCGCCA 62.820 66.667 0.00 0.00 34.57 5.69
3284 3348 4.819761 TGGCGTCGGATCAGCAGC 62.820 66.667 0.00 0.00 0.00 5.25
3374 3438 1.626686 ACTGCCTCTATGCTATCGCT 58.373 50.000 0.00 0.00 36.97 4.93
3581 3646 9.042008 GTACGGTAAATCATCTCATTTGTACAT 57.958 33.333 0.00 0.00 30.38 2.29
3596 3661 5.353123 TGAAAAGCTCCATGTACGGTAAATC 59.647 40.000 0.00 0.00 0.00 2.17
3623 3688 4.828072 AGAAAGAACCCCACAGAGATAC 57.172 45.455 0.00 0.00 0.00 2.24
3720 3786 6.990798 TCATCTGTATGTTTCCAAATGCAAA 58.009 32.000 0.00 0.00 34.50 3.68
3762 3828 8.514594 TCTGCAAAATGTTTATGAAGTCTTAGG 58.485 33.333 0.00 0.00 0.00 2.69
3787 3854 2.668457 CTCTGTCCAGTTATGCACGTTC 59.332 50.000 0.00 0.00 0.00 3.95
3791 3858 4.193826 TCTTCTCTGTCCAGTTATGCAC 57.806 45.455 0.00 0.00 0.00 4.57
3811 3893 5.105064 TGGCTACAACTTCTACCTAACCATC 60.105 44.000 0.00 0.00 0.00 3.51
3816 3898 6.614694 TGATTGGCTACAACTTCTACCTAA 57.385 37.500 0.00 0.00 39.87 2.69
3819 3901 6.759497 AAATGATTGGCTACAACTTCTACC 57.241 37.500 0.00 0.00 39.87 3.18
3840 3922 9.778741 CTCCCTATCAACAATTATGCTACTAAA 57.221 33.333 0.00 0.00 0.00 1.85
3882 3964 2.614987 GCTGAGCTCACTGATTTGTCCT 60.615 50.000 13.74 0.00 0.00 3.85
3883 3965 1.736681 GCTGAGCTCACTGATTTGTCC 59.263 52.381 13.74 0.00 0.00 4.02
3885 3967 2.551459 GTTGCTGAGCTCACTGATTTGT 59.449 45.455 13.74 0.00 0.00 2.83
3886 3968 2.812591 AGTTGCTGAGCTCACTGATTTG 59.187 45.455 13.74 2.01 0.00 2.32
3887 3969 3.137446 AGTTGCTGAGCTCACTGATTT 57.863 42.857 13.74 0.00 0.00 2.17
3910 3992 9.601971 GCACTGATGACGTTATTTAACTTTTTA 57.398 29.630 0.00 0.00 34.12 1.52
3911 3993 7.593644 GGCACTGATGACGTTATTTAACTTTTT 59.406 33.333 0.00 0.00 34.12 1.94
3948 4030 3.966979 AGGGTAATCATGTGCATGTCAA 58.033 40.909 11.38 0.00 39.72 3.18
3955 4037 5.822519 TGATTGAAGTAGGGTAATCATGTGC 59.177 40.000 0.00 0.00 35.34 4.57
4087 4170 3.306019 GCCTTGTTTTGTTGGGGACTATG 60.306 47.826 0.00 0.00 0.00 2.23
4091 4174 1.119684 AGCCTTGTTTTGTTGGGGAC 58.880 50.000 0.00 0.00 0.00 4.46
4093 4176 1.952193 CAAGCCTTGTTTTGTTGGGG 58.048 50.000 0.00 0.00 0.00 4.96
4145 4245 4.725556 TTAAGCTCAGTTTTGTACAGCG 57.274 40.909 0.00 0.00 32.54 5.18
4176 4277 3.248363 TGTGAGTTGAAATCTTCGTGCAG 59.752 43.478 0.00 0.00 0.00 4.41
4177 4278 3.202097 TGTGAGTTGAAATCTTCGTGCA 58.798 40.909 0.00 0.00 0.00 4.57
4244 4345 5.008217 CCTGTTTTGTAGTGAACGAATGGAA 59.992 40.000 0.00 0.00 31.33 3.53
4268 4370 8.352942 AGATTTTTGTGTCTGTCAACCTATTTC 58.647 33.333 0.00 0.00 0.00 2.17
4275 4377 7.740346 CGTATGTAGATTTTTGTGTCTGTCAAC 59.260 37.037 0.00 0.00 0.00 3.18
4328 4430 6.542370 TGCATAATTAGAGGTTGTAGGCTTTC 59.458 38.462 0.00 0.00 0.00 2.62
4341 4443 9.434420 TTTCCCATTTGTTTTGCATAATTAGAG 57.566 29.630 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.