Multiple sequence alignment - TraesCS7A01G215800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G215800 chr7A 100.000 3467 0 0 1 3467 182124748 182121282 0.000000e+00 6403.0
1 TraesCS7A01G215800 chr7A 93.015 272 17 2 406 675 561887979 561888250 2.510000e-106 396.0
2 TraesCS7A01G215800 chr7A 100.000 29 0 0 3439 3467 83303011 83303039 2.000000e-03 54.7
3 TraesCS7A01G215800 chr7B 95.314 2518 81 18 674 3173 144112576 144110078 0.000000e+00 3962.0
4 TraesCS7A01G215800 chr7B 91.228 57 3 2 3191 3247 144110079 144110025 3.710000e-10 76.8
5 TraesCS7A01G215800 chr7D 92.505 2575 88 44 672 3158 178132775 178130218 0.000000e+00 3589.0
6 TraesCS7A01G215800 chr7D 91.654 683 37 10 2683 3350 178123350 178122673 0.000000e+00 928.0
7 TraesCS7A01G215800 chr7D 92.347 196 14 1 2300 2494 178125657 178125462 9.480000e-71 278.0
8 TraesCS7A01G215800 chr7D 86.957 115 6 3 2504 2618 178125405 178125300 1.690000e-23 121.0
9 TraesCS7A01G215800 chr7D 92.105 76 4 2 2604 2679 178125014 178124941 4.730000e-19 106.0
10 TraesCS7A01G215800 chr7D 100.000 28 0 0 3440 3467 157211417 157211444 6.000000e-03 52.8
11 TraesCS7A01G215800 chr2A 94.318 264 14 1 408 670 103588385 103588122 1.500000e-108 403.0
12 TraesCS7A01G215800 chr2A 93.358 271 16 2 401 669 528661968 528661698 1.940000e-107 399.0
13 TraesCS7A01G215800 chr2A 94.681 94 5 0 3353 3446 26843811 26843718 2.790000e-31 147.0
14 TraesCS7A01G215800 chr2A 95.604 91 4 0 3353 3443 757538629 757538719 2.790000e-31 147.0
15 TraesCS7A01G215800 chr2A 86.957 115 12 3 3238 3350 758941124 758941011 3.630000e-25 126.0
16 TraesCS7A01G215800 chr4A 94.253 261 14 1 410 669 104373314 104373054 6.970000e-107 398.0
17 TraesCS7A01G215800 chr4A 95.556 90 4 0 3354 3443 624883193 624883282 1.000000e-30 145.0
18 TraesCS7A01G215800 chr4A 94.505 91 5 0 3353 3443 677354193 677354283 1.300000e-29 141.0
19 TraesCS7A01G215800 chr4A 96.970 33 1 0 3435 3467 690612265 690612233 4.830000e-04 56.5
20 TraesCS7A01G215800 chr3B 93.609 266 15 2 406 670 811005363 811005627 2.510000e-106 396.0
21 TraesCS7A01G215800 chr3B 100.000 29 0 0 3439 3467 803017311 803017339 2.000000e-03 54.7
22 TraesCS7A01G215800 chr1A 93.609 266 14 2 405 669 454738796 454739059 9.020000e-106 394.0
23 TraesCS7A01G215800 chr3A 93.233 266 16 2 410 674 739554046 739553782 1.170000e-104 390.0
24 TraesCS7A01G215800 chr3A 93.487 261 16 1 410 669 564425091 564424831 1.510000e-103 387.0
25 TraesCS7A01G215800 chr3A 80.906 309 54 5 10 316 478676746 478676441 4.470000e-59 239.0
26 TraesCS7A01G215800 chr3A 96.809 94 3 0 3353 3446 423687724 423687631 1.290000e-34 158.0
27 TraesCS7A01G215800 chr3A 87.963 108 11 1 3245 3350 537515014 537514907 3.630000e-25 126.0
28 TraesCS7A01G215800 chr3A 87.387 111 12 2 3242 3350 606738531 606738641 3.630000e-25 126.0
29 TraesCS7A01G215800 chr5D 93.511 262 16 1 410 670 209854668 209854929 4.200000e-104 388.0
30 TraesCS7A01G215800 chr5D 80.858 303 54 4 10 310 363307002 363307302 5.780000e-58 235.0
31 TraesCS7A01G215800 chr5D 88.393 112 11 2 3241 3350 250387753 250387642 2.170000e-27 134.0
32 TraesCS7A01G215800 chr5A 81.119 286 54 0 16 301 657659880 657660165 2.690000e-56 230.0
33 TraesCS7A01G215800 chr5A 95.745 94 4 0 3353 3446 71470561 71470468 5.990000e-33 152.0
34 TraesCS7A01G215800 chr6B 81.685 273 46 4 39 309 334148294 334148564 1.250000e-54 224.0
35 TraesCS7A01G215800 chr6B 84.874 119 16 2 3231 3347 240396521 240396639 6.080000e-23 119.0
36 TraesCS7A01G215800 chr5B 77.483 302 67 1 13 313 555233211 555232910 2.750000e-41 180.0
37 TraesCS7A01G215800 chr6D 93.617 94 6 0 3353 3446 75868583 75868490 1.300000e-29 141.0
38 TraesCS7A01G215800 chr4B 93.617 94 6 0 3353 3446 672086681 672086588 1.300000e-29 141.0
39 TraesCS7A01G215800 chr4B 89.189 111 11 1 3241 3350 600188651 600188761 1.680000e-28 137.0
40 TraesCS7A01G215800 chr2D 93.617 94 6 0 3353 3446 9526146 9526053 1.300000e-29 141.0
41 TraesCS7A01G215800 chr3D 89.286 112 10 1 3241 3350 195149181 195149070 4.670000e-29 139.0
42 TraesCS7A01G215800 chrUn 87.611 113 10 3 3242 3351 87229312 87229423 1.010000e-25 128.0
43 TraesCS7A01G215800 chr6A 92.683 41 2 1 3427 3467 319476731 319476770 1.340000e-04 58.4
44 TraesCS7A01G215800 chr1B 100.000 29 0 0 3439 3467 408388510 408388482 2.000000e-03 54.7
45 TraesCS7A01G215800 chr1B 100.000 28 0 0 3440 3467 94252435 94252408 6.000000e-03 52.8
46 TraesCS7A01G215800 chr1D 100.000 28 0 0 3440 3467 281652753 281652780 6.000000e-03 52.8
47 TraesCS7A01G215800 chr1D 100.000 28 0 0 3440 3467 418231853 418231826 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G215800 chr7A 182121282 182124748 3466 True 6403.00 6403 100.00000 1 3467 1 chr7A.!!$R1 3466
1 TraesCS7A01G215800 chr7B 144110025 144112576 2551 True 2019.40 3962 93.27100 674 3247 2 chr7B.!!$R1 2573
2 TraesCS7A01G215800 chr7D 178130218 178132775 2557 True 3589.00 3589 92.50500 672 3158 1 chr7D.!!$R1 2486
3 TraesCS7A01G215800 chr7D 178122673 178125657 2984 True 358.25 928 90.76575 2300 3350 4 chr7D.!!$R2 1050

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.033228 GACATCCTCGGAGATGCCAG 59.967 60.0 6.58 0.0 46.29 4.85 F
324 325 0.250234 CTCGGAGATGCCAGGTTTGA 59.750 55.0 0.00 0.0 35.94 2.69 F
785 788 0.318445 CCTCGAGTCAACGGTCGTTT 60.318 55.0 12.31 0.0 36.00 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1454 1457 1.077501 ATCACCATGCCGGACTTGG 60.078 57.895 21.32 21.32 46.67 3.61 R
2113 2122 1.349542 TAACCCATGGTGCCGGCTAT 61.350 55.000 29.70 16.40 35.34 2.97 R
2589 2649 1.956629 ATACTTGACCCGCTGACCCG 61.957 60.000 0.00 0.00 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.401552 CTACACATTGCATGGAACCCG 59.598 52.381 0.12 0.00 33.60 5.28
21 22 0.539438 ACACATTGCATGGAACCCGT 60.539 50.000 0.12 0.00 33.60 5.28
22 23 0.171007 CACATTGCATGGAACCCGTC 59.829 55.000 0.12 0.00 33.60 4.79
31 32 3.644861 GGAACCCGTCCTCACATTT 57.355 52.632 0.00 0.00 43.98 2.32
32 33 1.450025 GGAACCCGTCCTCACATTTC 58.550 55.000 0.00 0.00 43.98 2.17
33 34 1.271163 GGAACCCGTCCTCACATTTCA 60.271 52.381 0.00 0.00 43.98 2.69
34 35 1.804748 GAACCCGTCCTCACATTTCAC 59.195 52.381 0.00 0.00 0.00 3.18
35 36 0.762418 ACCCGTCCTCACATTTCACA 59.238 50.000 0.00 0.00 0.00 3.58
36 37 1.142060 ACCCGTCCTCACATTTCACAA 59.858 47.619 0.00 0.00 0.00 3.33
37 38 2.224769 ACCCGTCCTCACATTTCACAAT 60.225 45.455 0.00 0.00 0.00 2.71
38 39 3.008594 ACCCGTCCTCACATTTCACAATA 59.991 43.478 0.00 0.00 0.00 1.90
39 40 3.374058 CCCGTCCTCACATTTCACAATAC 59.626 47.826 0.00 0.00 0.00 1.89
40 41 4.000325 CCGTCCTCACATTTCACAATACA 59.000 43.478 0.00 0.00 0.00 2.29
41 42 4.454161 CCGTCCTCACATTTCACAATACAA 59.546 41.667 0.00 0.00 0.00 2.41
42 43 5.049060 CCGTCCTCACATTTCACAATACAAA 60.049 40.000 0.00 0.00 0.00 2.83
43 44 6.079763 CGTCCTCACATTTCACAATACAAAG 58.920 40.000 0.00 0.00 0.00 2.77
44 45 6.381801 GTCCTCACATTTCACAATACAAAGG 58.618 40.000 0.00 0.00 0.00 3.11
45 46 5.476599 TCCTCACATTTCACAATACAAAGGG 59.523 40.000 0.00 0.00 0.00 3.95
46 47 5.336690 CCTCACATTTCACAATACAAAGGGG 60.337 44.000 0.00 0.00 0.00 4.79
47 48 5.389520 TCACATTTCACAATACAAAGGGGA 58.610 37.500 0.00 0.00 0.00 4.81
48 49 5.242838 TCACATTTCACAATACAAAGGGGAC 59.757 40.000 0.00 0.00 0.00 4.46
49 50 5.010516 CACATTTCACAATACAAAGGGGACA 59.989 40.000 0.00 0.00 0.00 4.02
50 51 5.600484 ACATTTCACAATACAAAGGGGACAA 59.400 36.000 0.00 0.00 0.00 3.18
51 52 6.098982 ACATTTCACAATACAAAGGGGACAAA 59.901 34.615 0.00 0.00 0.00 2.83
52 53 5.523438 TTCACAATACAAAGGGGACAAAC 57.477 39.130 0.00 0.00 0.00 2.93
53 54 3.566322 TCACAATACAAAGGGGACAAACG 59.434 43.478 0.00 0.00 0.00 3.60
54 55 3.316868 CACAATACAAAGGGGACAAACGT 59.683 43.478 0.00 0.00 0.00 3.99
55 56 3.566742 ACAATACAAAGGGGACAAACGTC 59.433 43.478 0.00 0.00 0.00 4.34
56 57 3.495434 ATACAAAGGGGACAAACGTCA 57.505 42.857 0.00 0.00 34.92 4.35
57 58 1.675552 ACAAAGGGGACAAACGTCAG 58.324 50.000 0.00 0.00 34.92 3.51
58 59 1.210967 ACAAAGGGGACAAACGTCAGA 59.789 47.619 0.00 0.00 34.92 3.27
59 60 2.294074 CAAAGGGGACAAACGTCAGAA 58.706 47.619 0.00 0.00 34.92 3.02
60 61 2.256117 AAGGGGACAAACGTCAGAAG 57.744 50.000 0.00 0.00 34.92 2.85
61 62 0.396811 AGGGGACAAACGTCAGAAGG 59.603 55.000 0.00 0.00 34.92 3.46
62 63 1.235281 GGGGACAAACGTCAGAAGGC 61.235 60.000 0.00 0.00 34.92 4.35
63 64 0.250338 GGGACAAACGTCAGAAGGCT 60.250 55.000 0.00 0.00 34.92 4.58
64 65 1.594331 GGACAAACGTCAGAAGGCTT 58.406 50.000 0.00 0.00 34.92 4.35
65 66 1.264288 GGACAAACGTCAGAAGGCTTG 59.736 52.381 3.46 0.00 34.92 4.01
66 67 2.210116 GACAAACGTCAGAAGGCTTGA 58.790 47.619 3.46 0.00 33.34 3.02
67 68 2.213499 ACAAACGTCAGAAGGCTTGAG 58.787 47.619 3.46 0.00 0.00 3.02
68 69 1.532868 CAAACGTCAGAAGGCTTGAGG 59.467 52.381 3.46 5.87 0.00 3.86
69 70 0.759346 AACGTCAGAAGGCTTGAGGT 59.241 50.000 3.46 6.59 32.93 3.85
70 71 0.034059 ACGTCAGAAGGCTTGAGGTG 59.966 55.000 3.46 0.00 30.81 4.00
71 72 1.294659 CGTCAGAAGGCTTGAGGTGC 61.295 60.000 3.46 0.00 0.00 5.01
77 78 2.125350 GGCTTGAGGTGCCGAGAG 60.125 66.667 0.00 0.00 41.03 3.20
78 79 2.650116 GGCTTGAGGTGCCGAGAGA 61.650 63.158 0.00 0.00 41.03 3.10
79 80 1.293498 GCTTGAGGTGCCGAGAGAA 59.707 57.895 0.00 0.00 0.00 2.87
80 81 0.107945 GCTTGAGGTGCCGAGAGAAT 60.108 55.000 0.00 0.00 0.00 2.40
81 82 1.677217 GCTTGAGGTGCCGAGAGAATT 60.677 52.381 0.00 0.00 0.00 2.17
82 83 2.704572 CTTGAGGTGCCGAGAGAATTT 58.295 47.619 0.00 0.00 0.00 1.82
83 84 3.861840 CTTGAGGTGCCGAGAGAATTTA 58.138 45.455 0.00 0.00 0.00 1.40
84 85 4.446371 CTTGAGGTGCCGAGAGAATTTAT 58.554 43.478 0.00 0.00 0.00 1.40
85 86 4.487714 TGAGGTGCCGAGAGAATTTATT 57.512 40.909 0.00 0.00 0.00 1.40
86 87 4.191544 TGAGGTGCCGAGAGAATTTATTG 58.808 43.478 0.00 0.00 0.00 1.90
87 88 4.081142 TGAGGTGCCGAGAGAATTTATTGA 60.081 41.667 0.00 0.00 0.00 2.57
88 89 4.192317 AGGTGCCGAGAGAATTTATTGAC 58.808 43.478 0.00 0.00 0.00 3.18
89 90 3.312697 GGTGCCGAGAGAATTTATTGACC 59.687 47.826 0.00 0.00 0.00 4.02
90 91 3.312697 GTGCCGAGAGAATTTATTGACCC 59.687 47.826 0.00 0.00 0.00 4.46
91 92 3.054728 TGCCGAGAGAATTTATTGACCCA 60.055 43.478 0.00 0.00 0.00 4.51
92 93 3.945285 GCCGAGAGAATTTATTGACCCAA 59.055 43.478 0.00 0.00 0.00 4.12
93 94 4.035675 GCCGAGAGAATTTATTGACCCAAG 59.964 45.833 0.00 0.00 0.00 3.61
94 95 5.186198 CCGAGAGAATTTATTGACCCAAGT 58.814 41.667 0.00 0.00 0.00 3.16
95 96 5.065218 CCGAGAGAATTTATTGACCCAAGTG 59.935 44.000 0.00 0.00 0.00 3.16
96 97 5.065218 CGAGAGAATTTATTGACCCAAGTGG 59.935 44.000 0.00 0.00 41.37 4.00
97 98 4.706962 AGAGAATTTATTGACCCAAGTGGC 59.293 41.667 0.00 0.00 37.83 5.01
98 99 4.415596 AGAATTTATTGACCCAAGTGGCA 58.584 39.130 0.00 0.00 37.83 4.92
99 100 4.837860 AGAATTTATTGACCCAAGTGGCAA 59.162 37.500 0.00 0.00 37.83 4.52
100 101 4.806640 ATTTATTGACCCAAGTGGCAAG 57.193 40.909 0.00 0.00 37.83 4.01
101 102 2.969821 TATTGACCCAAGTGGCAAGT 57.030 45.000 0.00 0.00 37.83 3.16
102 103 1.331214 ATTGACCCAAGTGGCAAGTG 58.669 50.000 0.00 0.00 37.83 3.16
103 104 0.257328 TTGACCCAAGTGGCAAGTGA 59.743 50.000 0.00 0.00 37.83 3.41
104 105 0.257328 TGACCCAAGTGGCAAGTGAA 59.743 50.000 0.00 0.00 37.83 3.18
105 106 1.133513 TGACCCAAGTGGCAAGTGAAT 60.134 47.619 0.00 0.00 37.83 2.57
106 107 1.963515 GACCCAAGTGGCAAGTGAATT 59.036 47.619 0.00 0.00 37.83 2.17
107 108 3.153919 GACCCAAGTGGCAAGTGAATTA 58.846 45.455 0.00 0.00 37.83 1.40
108 109 3.157087 ACCCAAGTGGCAAGTGAATTAG 58.843 45.455 0.00 0.00 37.83 1.73
109 110 3.157087 CCCAAGTGGCAAGTGAATTAGT 58.843 45.455 0.00 0.00 0.00 2.24
110 111 3.191371 CCCAAGTGGCAAGTGAATTAGTC 59.809 47.826 0.00 0.00 0.00 2.59
111 112 3.820467 CCAAGTGGCAAGTGAATTAGTCA 59.180 43.478 0.00 0.00 0.00 3.41
112 113 4.460382 CCAAGTGGCAAGTGAATTAGTCAT 59.540 41.667 0.00 0.00 38.90 3.06
113 114 5.647658 CCAAGTGGCAAGTGAATTAGTCATA 59.352 40.000 0.00 0.00 38.90 2.15
114 115 6.183360 CCAAGTGGCAAGTGAATTAGTCATAG 60.183 42.308 0.00 0.00 38.90 2.23
115 116 6.299805 AGTGGCAAGTGAATTAGTCATAGA 57.700 37.500 0.00 0.00 38.90 1.98
116 117 6.893583 AGTGGCAAGTGAATTAGTCATAGAT 58.106 36.000 0.00 0.00 38.90 1.98
117 118 6.989169 AGTGGCAAGTGAATTAGTCATAGATC 59.011 38.462 0.00 0.00 38.90 2.75
118 119 6.989169 GTGGCAAGTGAATTAGTCATAGATCT 59.011 38.462 0.00 0.00 38.90 2.75
119 120 7.170658 GTGGCAAGTGAATTAGTCATAGATCTC 59.829 40.741 0.00 0.00 38.90 2.75
120 121 6.648725 GGCAAGTGAATTAGTCATAGATCTCC 59.351 42.308 0.00 0.00 38.90 3.71
121 122 7.212976 GCAAGTGAATTAGTCATAGATCTCCA 58.787 38.462 0.00 0.00 38.90 3.86
122 123 7.712639 GCAAGTGAATTAGTCATAGATCTCCAA 59.287 37.037 0.00 0.00 38.90 3.53
123 124 9.258826 CAAGTGAATTAGTCATAGATCTCCAAG 57.741 37.037 0.00 0.00 38.90 3.61
124 125 8.546083 AGTGAATTAGTCATAGATCTCCAAGT 57.454 34.615 0.00 0.00 38.90 3.16
125 126 8.420222 AGTGAATTAGTCATAGATCTCCAAGTG 58.580 37.037 0.00 0.00 38.90 3.16
126 127 8.417106 GTGAATTAGTCATAGATCTCCAAGTGA 58.583 37.037 0.00 0.00 38.90 3.41
127 128 8.981659 TGAATTAGTCATAGATCTCCAAGTGAA 58.018 33.333 0.00 0.00 0.00 3.18
128 129 9.255304 GAATTAGTCATAGATCTCCAAGTGAAC 57.745 37.037 0.00 0.00 0.00 3.18
129 130 7.718334 TTAGTCATAGATCTCCAAGTGAACA 57.282 36.000 0.00 0.00 0.00 3.18
130 131 5.971763 AGTCATAGATCTCCAAGTGAACAC 58.028 41.667 0.00 0.00 0.00 3.32
131 132 4.800993 GTCATAGATCTCCAAGTGAACACG 59.199 45.833 0.00 0.00 36.20 4.49
132 133 2.086054 AGATCTCCAAGTGAACACGC 57.914 50.000 0.00 0.00 36.20 5.34
133 134 0.716108 GATCTCCAAGTGAACACGCG 59.284 55.000 3.53 3.53 36.20 6.01
134 135 0.033504 ATCTCCAAGTGAACACGCGT 59.966 50.000 5.58 5.58 36.20 6.01
135 136 0.669619 TCTCCAAGTGAACACGCGTA 59.330 50.000 13.44 0.00 36.20 4.42
136 137 0.782384 CTCCAAGTGAACACGCGTAC 59.218 55.000 13.44 6.60 36.20 3.67
137 138 0.598158 TCCAAGTGAACACGCGTACC 60.598 55.000 13.44 4.40 36.20 3.34
138 139 0.599204 CCAAGTGAACACGCGTACCT 60.599 55.000 13.44 0.00 36.20 3.08
139 140 1.214367 CAAGTGAACACGCGTACCTT 58.786 50.000 13.44 6.83 36.20 3.50
140 141 2.396601 CAAGTGAACACGCGTACCTTA 58.603 47.619 13.44 0.00 36.20 2.69
141 142 2.342910 AGTGAACACGCGTACCTTAG 57.657 50.000 13.44 0.00 36.20 2.18
142 143 1.068055 AGTGAACACGCGTACCTTAGG 60.068 52.381 13.44 0.00 36.20 2.69
143 144 1.068333 GTGAACACGCGTACCTTAGGA 60.068 52.381 13.44 0.00 0.00 2.94
144 145 1.200716 TGAACACGCGTACCTTAGGAG 59.799 52.381 13.44 0.00 0.00 3.69
146 147 0.322816 ACACGCGTACCTTAGGAGGA 60.323 55.000 13.44 0.00 46.74 3.71
147 148 0.381089 CACGCGTACCTTAGGAGGAG 59.619 60.000 13.44 0.00 46.74 3.69
148 149 1.359475 CGCGTACCTTAGGAGGAGC 59.641 63.158 4.77 4.06 46.74 4.70
149 150 1.381928 CGCGTACCTTAGGAGGAGCA 61.382 60.000 4.77 0.00 46.74 4.26
150 151 0.386113 GCGTACCTTAGGAGGAGCAG 59.614 60.000 4.77 0.00 46.74 4.24
151 152 1.033574 CGTACCTTAGGAGGAGCAGG 58.966 60.000 4.77 0.00 46.74 4.85
152 153 1.415200 GTACCTTAGGAGGAGCAGGG 58.585 60.000 4.77 0.00 46.74 4.45
153 154 1.016415 TACCTTAGGAGGAGCAGGGT 58.984 55.000 4.77 0.00 46.74 4.34
154 155 1.016415 ACCTTAGGAGGAGCAGGGTA 58.984 55.000 4.77 0.00 46.74 3.69
155 156 1.343176 ACCTTAGGAGGAGCAGGGTAC 60.343 57.143 4.77 0.00 46.74 3.34
176 177 8.103948 GGTACCCTCATATGATCTTTCAAATG 57.896 38.462 5.72 0.00 34.96 2.32
177 178 7.175641 GGTACCCTCATATGATCTTTCAAATGG 59.824 40.741 5.72 0.00 34.96 3.16
178 179 6.676558 ACCCTCATATGATCTTTCAAATGGT 58.323 36.000 5.72 0.00 34.96 3.55
179 180 6.548622 ACCCTCATATGATCTTTCAAATGGTG 59.451 38.462 5.72 0.00 34.96 4.17
180 181 6.444633 CCTCATATGATCTTTCAAATGGTGC 58.555 40.000 5.72 0.00 34.96 5.01
181 182 6.063640 TCATATGATCTTTCAAATGGTGCG 57.936 37.500 0.00 0.00 34.96 5.34
182 183 5.821995 TCATATGATCTTTCAAATGGTGCGA 59.178 36.000 0.00 0.00 34.96 5.10
183 184 3.829886 TGATCTTTCAAATGGTGCGAC 57.170 42.857 0.00 0.00 0.00 5.19
184 185 2.159430 TGATCTTTCAAATGGTGCGACG 59.841 45.455 0.00 0.00 0.00 5.12
185 186 1.872388 TCTTTCAAATGGTGCGACGA 58.128 45.000 0.00 0.00 0.00 4.20
186 187 1.529438 TCTTTCAAATGGTGCGACGAC 59.471 47.619 0.00 0.00 0.00 4.34
187 188 0.589223 TTTCAAATGGTGCGACGACC 59.411 50.000 0.00 4.21 36.43 4.79
192 193 4.429212 TGGTGCGACGACCATCCG 62.429 66.667 13.06 0.00 41.30 4.18
203 204 4.864334 CCATCCGGTGCCCTGCTC 62.864 72.222 0.00 0.00 0.00 4.26
219 220 2.238245 GCTCGAAGCACTTGTTGATG 57.762 50.000 2.53 0.00 41.89 3.07
220 221 1.135859 GCTCGAAGCACTTGTTGATGG 60.136 52.381 2.53 0.00 41.89 3.51
221 222 2.416747 CTCGAAGCACTTGTTGATGGA 58.583 47.619 0.00 0.00 0.00 3.41
222 223 2.143122 TCGAAGCACTTGTTGATGGAC 58.857 47.619 0.00 0.00 0.00 4.02
223 224 1.136252 CGAAGCACTTGTTGATGGACG 60.136 52.381 0.00 0.00 0.00 4.79
224 225 2.143122 GAAGCACTTGTTGATGGACGA 58.857 47.619 0.00 0.00 0.00 4.20
225 226 2.479566 AGCACTTGTTGATGGACGAT 57.520 45.000 0.00 0.00 0.00 3.73
226 227 2.350522 AGCACTTGTTGATGGACGATC 58.649 47.619 0.00 0.00 0.00 3.69
227 228 1.061131 GCACTTGTTGATGGACGATCG 59.939 52.381 14.88 14.88 33.17 3.69
228 229 1.061131 CACTTGTTGATGGACGATCGC 59.939 52.381 16.60 8.04 33.17 4.58
229 230 0.298707 CTTGTTGATGGACGATCGCG 59.701 55.000 16.60 0.00 44.79 5.87
230 231 1.692148 TTGTTGATGGACGATCGCGC 61.692 55.000 16.60 7.58 42.48 6.86
231 232 1.878522 GTTGATGGACGATCGCGCT 60.879 57.895 16.60 0.00 42.48 5.92
232 233 1.588932 TTGATGGACGATCGCGCTC 60.589 57.895 16.60 5.25 42.48 5.03
233 234 3.094058 GATGGACGATCGCGCTCG 61.094 66.667 28.47 28.47 44.14 5.03
239 240 3.390017 CGATCGCGCTCGTCCATG 61.390 66.667 23.00 0.00 36.96 3.66
240 241 3.032609 GATCGCGCTCGTCCATGG 61.033 66.667 4.97 4.97 36.96 3.66
246 247 2.785258 GCTCGTCCATGGCGAAAC 59.215 61.111 24.60 18.14 37.93 2.78
247 248 3.081133 CTCGTCCATGGCGAAACG 58.919 61.111 24.60 20.53 37.93 3.60
248 249 2.433491 TCGTCCATGGCGAAACGG 60.433 61.111 23.16 7.51 35.28 4.44
249 250 2.740826 CGTCCATGGCGAAACGGT 60.741 61.111 19.72 0.00 0.00 4.83
250 251 1.446445 CGTCCATGGCGAAACGGTA 60.446 57.895 19.72 0.00 0.00 4.02
251 252 1.015085 CGTCCATGGCGAAACGGTAA 61.015 55.000 19.72 0.00 0.00 2.85
252 253 0.725117 GTCCATGGCGAAACGGTAAG 59.275 55.000 6.96 0.00 0.00 2.34
253 254 1.022451 TCCATGGCGAAACGGTAAGC 61.022 55.000 6.96 0.00 0.00 3.09
265 266 3.206090 GGTAAGCCGAACGAACAGT 57.794 52.632 0.00 0.00 0.00 3.55
266 267 0.788391 GGTAAGCCGAACGAACAGTG 59.212 55.000 0.00 0.00 0.00 3.66
267 268 1.603678 GGTAAGCCGAACGAACAGTGA 60.604 52.381 0.00 0.00 0.00 3.41
268 269 2.129607 GTAAGCCGAACGAACAGTGAA 58.870 47.619 0.00 0.00 0.00 3.18
269 270 1.217882 AAGCCGAACGAACAGTGAAG 58.782 50.000 0.00 0.00 0.00 3.02
270 271 0.387929 AGCCGAACGAACAGTGAAGA 59.612 50.000 0.00 0.00 0.00 2.87
271 272 1.000955 AGCCGAACGAACAGTGAAGAT 59.999 47.619 0.00 0.00 0.00 2.40
272 273 2.230508 AGCCGAACGAACAGTGAAGATA 59.769 45.455 0.00 0.00 0.00 1.98
273 274 3.119101 AGCCGAACGAACAGTGAAGATAT 60.119 43.478 0.00 0.00 0.00 1.63
274 275 3.243177 GCCGAACGAACAGTGAAGATATC 59.757 47.826 0.00 0.00 0.00 1.63
275 276 4.421058 CCGAACGAACAGTGAAGATATCA 58.579 43.478 5.32 0.00 35.05 2.15
276 277 5.043903 CCGAACGAACAGTGAAGATATCAT 58.956 41.667 5.32 0.00 40.97 2.45
277 278 5.520288 CCGAACGAACAGTGAAGATATCATT 59.480 40.000 5.32 0.00 40.97 2.57
278 279 6.695713 CCGAACGAACAGTGAAGATATCATTA 59.304 38.462 5.32 0.00 40.97 1.90
279 280 7.382488 CCGAACGAACAGTGAAGATATCATTAT 59.618 37.037 5.32 0.00 40.97 1.28
280 281 8.755941 CGAACGAACAGTGAAGATATCATTATT 58.244 33.333 5.32 0.00 40.97 1.40
282 283 9.823647 AACGAACAGTGAAGATATCATTATTCT 57.176 29.630 5.32 0.00 40.97 2.40
283 284 9.469807 ACGAACAGTGAAGATATCATTATTCTC 57.530 33.333 5.32 1.52 40.97 2.87
284 285 8.920665 CGAACAGTGAAGATATCATTATTCTCC 58.079 37.037 5.32 0.00 40.97 3.71
285 286 8.824159 AACAGTGAAGATATCATTATTCTCCG 57.176 34.615 5.32 0.00 40.97 4.63
286 287 7.382110 ACAGTGAAGATATCATTATTCTCCGG 58.618 38.462 5.32 0.00 40.97 5.14
287 288 7.015682 ACAGTGAAGATATCATTATTCTCCGGT 59.984 37.037 0.00 0.98 40.97 5.28
288 289 7.330454 CAGTGAAGATATCATTATTCTCCGGTG 59.670 40.741 0.00 0.00 40.97 4.94
289 290 6.091441 GTGAAGATATCATTATTCTCCGGTGC 59.909 42.308 0.00 0.00 40.97 5.01
290 291 5.091261 AGATATCATTATTCTCCGGTGCC 57.909 43.478 0.00 0.00 0.00 5.01
291 292 2.169832 ATCATTATTCTCCGGTGCCG 57.830 50.000 0.00 3.25 39.44 5.69
292 293 1.116308 TCATTATTCTCCGGTGCCGA 58.884 50.000 12.71 0.00 42.83 5.54
293 294 1.691976 TCATTATTCTCCGGTGCCGAT 59.308 47.619 12.71 0.04 42.83 4.18
294 295 1.800586 CATTATTCTCCGGTGCCGATG 59.199 52.381 12.71 4.50 42.83 3.84
295 296 0.531974 TTATTCTCCGGTGCCGATGC 60.532 55.000 12.71 0.00 42.83 3.91
305 306 2.407268 TGCCGATGCAATGACATCC 58.593 52.632 10.46 1.68 46.66 3.51
306 307 0.107066 TGCCGATGCAATGACATCCT 60.107 50.000 10.46 0.00 46.66 3.24
307 308 0.590195 GCCGATGCAATGACATCCTC 59.410 55.000 10.46 2.15 42.91 3.71
308 309 0.863799 CCGATGCAATGACATCCTCG 59.136 55.000 10.46 0.00 42.91 4.63
309 310 0.863799 CGATGCAATGACATCCTCGG 59.136 55.000 10.46 0.00 42.91 4.63
310 311 1.538849 CGATGCAATGACATCCTCGGA 60.539 52.381 10.46 0.00 42.91 4.55
311 312 2.141517 GATGCAATGACATCCTCGGAG 58.858 52.381 0.00 0.00 40.52 4.63
312 313 1.194218 TGCAATGACATCCTCGGAGA 58.806 50.000 6.58 0.00 0.00 3.71
313 314 1.764723 TGCAATGACATCCTCGGAGAT 59.235 47.619 6.58 0.00 33.89 2.75
315 316 2.141517 CAATGACATCCTCGGAGATGC 58.858 52.381 6.58 8.46 46.29 3.91
316 317 0.683973 ATGACATCCTCGGAGATGCC 59.316 55.000 6.58 5.50 46.29 4.40
317 318 0.687427 TGACATCCTCGGAGATGCCA 60.687 55.000 6.58 7.71 46.29 4.92
318 319 0.033228 GACATCCTCGGAGATGCCAG 59.967 60.000 6.58 0.00 46.29 4.85
319 320 1.370437 CATCCTCGGAGATGCCAGG 59.630 63.158 6.58 0.00 37.44 4.45
320 321 1.074926 ATCCTCGGAGATGCCAGGT 60.075 57.895 6.58 0.00 36.73 4.00
321 322 0.692419 ATCCTCGGAGATGCCAGGTT 60.692 55.000 6.58 0.00 36.73 3.50
322 323 0.909610 TCCTCGGAGATGCCAGGTTT 60.910 55.000 6.58 0.00 36.73 3.27
323 324 0.745845 CCTCGGAGATGCCAGGTTTG 60.746 60.000 6.58 0.00 35.94 2.93
324 325 0.250234 CTCGGAGATGCCAGGTTTGA 59.750 55.000 0.00 0.00 35.94 2.69
325 326 0.690192 TCGGAGATGCCAGGTTTGAA 59.310 50.000 0.00 0.00 35.94 2.69
326 327 1.281867 TCGGAGATGCCAGGTTTGAAT 59.718 47.619 0.00 0.00 35.94 2.57
327 328 2.503765 TCGGAGATGCCAGGTTTGAATA 59.496 45.455 0.00 0.00 35.94 1.75
328 329 2.614057 CGGAGATGCCAGGTTTGAATAC 59.386 50.000 0.00 0.00 35.94 1.89
329 330 3.620488 GGAGATGCCAGGTTTGAATACA 58.380 45.455 0.00 0.00 36.34 2.29
330 331 3.378427 GGAGATGCCAGGTTTGAATACAC 59.622 47.826 0.00 0.00 36.34 2.90
331 332 4.265073 GAGATGCCAGGTTTGAATACACT 58.735 43.478 0.00 0.00 0.00 3.55
332 333 4.666512 AGATGCCAGGTTTGAATACACTT 58.333 39.130 0.00 0.00 0.00 3.16
333 334 4.460382 AGATGCCAGGTTTGAATACACTTG 59.540 41.667 0.00 0.00 0.00 3.16
334 335 3.826524 TGCCAGGTTTGAATACACTTGA 58.173 40.909 0.00 0.00 0.00 3.02
335 336 4.406456 TGCCAGGTTTGAATACACTTGAT 58.594 39.130 0.00 0.00 0.00 2.57
336 337 4.218200 TGCCAGGTTTGAATACACTTGATG 59.782 41.667 0.00 0.00 0.00 3.07
337 338 4.737054 CCAGGTTTGAATACACTTGATGC 58.263 43.478 0.00 0.00 0.00 3.91
338 339 4.218200 CCAGGTTTGAATACACTTGATGCA 59.782 41.667 0.00 0.00 0.00 3.96
339 340 5.396484 CAGGTTTGAATACACTTGATGCAG 58.604 41.667 0.00 0.00 0.00 4.41
340 341 5.181811 CAGGTTTGAATACACTTGATGCAGA 59.818 40.000 0.00 0.00 0.00 4.26
341 342 5.948162 AGGTTTGAATACACTTGATGCAGAT 59.052 36.000 0.00 0.00 0.00 2.90
342 343 6.032094 GGTTTGAATACACTTGATGCAGATG 58.968 40.000 0.00 0.00 0.00 2.90
343 344 6.127925 GGTTTGAATACACTTGATGCAGATGA 60.128 38.462 0.00 0.00 0.00 2.92
344 345 6.426980 TTGAATACACTTGATGCAGATGAC 57.573 37.500 0.00 0.00 0.00 3.06
345 346 5.737860 TGAATACACTTGATGCAGATGACT 58.262 37.500 0.00 0.00 0.00 3.41
346 347 6.175471 TGAATACACTTGATGCAGATGACTT 58.825 36.000 0.00 0.00 0.00 3.01
347 348 6.093082 TGAATACACTTGATGCAGATGACTTG 59.907 38.462 0.00 0.00 0.00 3.16
348 349 2.486982 ACACTTGATGCAGATGACTTGC 59.513 45.455 0.00 0.00 0.00 4.01
349 350 2.486592 CACTTGATGCAGATGACTTGCA 59.513 45.455 2.11 2.11 43.04 4.08
373 374 8.623030 GCATATGCATTTAAATGGGATTTTTGT 58.377 29.630 25.61 0.06 41.59 2.83
376 377 7.126726 TGCATTTAAATGGGATTTTTGTTCG 57.873 32.000 25.61 0.07 36.90 3.95
377 378 6.148480 TGCATTTAAATGGGATTTTTGTTCGG 59.852 34.615 25.61 0.00 36.90 4.30
378 379 6.370166 GCATTTAAATGGGATTTTTGTTCGGA 59.630 34.615 25.61 0.00 36.90 4.55
379 380 7.095017 GCATTTAAATGGGATTTTTGTTCGGAA 60.095 33.333 25.61 0.00 36.90 4.30
380 381 8.778358 CATTTAAATGGGATTTTTGTTCGGAAA 58.222 29.630 18.72 0.00 33.82 3.13
381 382 8.732746 TTTAAATGGGATTTTTGTTCGGAAAA 57.267 26.923 0.00 0.00 33.82 2.29
382 383 8.910351 TTAAATGGGATTTTTGTTCGGAAAAT 57.090 26.923 0.00 0.00 38.89 1.82
383 384 9.998106 TTAAATGGGATTTTTGTTCGGAAAATA 57.002 25.926 0.00 0.00 36.96 1.40
384 385 7.899178 AATGGGATTTTTGTTCGGAAAATAC 57.101 32.000 0.00 0.00 36.96 1.89
385 386 5.462405 TGGGATTTTTGTTCGGAAAATACG 58.538 37.500 0.00 0.00 37.91 3.06
386 387 5.009811 TGGGATTTTTGTTCGGAAAATACGT 59.990 36.000 0.00 0.00 37.91 3.57
387 388 5.343860 GGGATTTTTGTTCGGAAAATACGTG 59.656 40.000 0.00 0.00 37.91 4.49
388 389 5.916320 GGATTTTTGTTCGGAAAATACGTGT 59.084 36.000 0.00 0.00 36.96 4.49
389 390 7.076983 GGATTTTTGTTCGGAAAATACGTGTA 58.923 34.615 0.00 0.00 36.96 2.90
390 391 7.590689 GGATTTTTGTTCGGAAAATACGTGTAA 59.409 33.333 0.00 0.00 36.96 2.41
391 392 8.853469 ATTTTTGTTCGGAAAATACGTGTAAA 57.147 26.923 0.00 0.00 35.54 2.01
392 393 8.853469 TTTTTGTTCGGAAAATACGTGTAAAT 57.147 26.923 0.00 0.00 0.00 1.40
393 394 7.839438 TTTGTTCGGAAAATACGTGTAAATG 57.161 32.000 0.00 0.00 0.00 2.32
394 395 5.929278 TGTTCGGAAAATACGTGTAAATGG 58.071 37.500 0.00 0.00 0.00 3.16
395 396 5.699915 TGTTCGGAAAATACGTGTAAATGGA 59.300 36.000 0.00 0.00 0.00 3.41
396 397 6.372103 TGTTCGGAAAATACGTGTAAATGGAT 59.628 34.615 0.00 0.00 0.00 3.41
397 398 6.592798 TCGGAAAATACGTGTAAATGGATC 57.407 37.500 0.00 0.00 0.00 3.36
398 399 6.107343 TCGGAAAATACGTGTAAATGGATCA 58.893 36.000 0.00 0.00 0.00 2.92
399 400 6.036300 TCGGAAAATACGTGTAAATGGATCAC 59.964 38.462 0.00 0.00 0.00 3.06
400 401 6.036735 CGGAAAATACGTGTAAATGGATCACT 59.963 38.462 0.00 0.00 0.00 3.41
401 402 7.413657 CGGAAAATACGTGTAAATGGATCACTT 60.414 37.037 0.00 0.00 0.00 3.16
402 403 8.885722 GGAAAATACGTGTAAATGGATCACTTA 58.114 33.333 0.00 0.00 0.00 2.24
418 419 9.268282 TGGATCACTTAAATATATACTCCCTCC 57.732 37.037 0.00 0.00 0.00 4.30
419 420 9.268282 GGATCACTTAAATATATACTCCCTCCA 57.732 37.037 0.00 0.00 0.00 3.86
421 422 9.845214 ATCACTTAAATATATACTCCCTCCAGT 57.155 33.333 0.00 0.00 0.00 4.00
422 423 9.310449 TCACTTAAATATATACTCCCTCCAGTC 57.690 37.037 0.00 0.00 0.00 3.51
423 424 8.532819 CACTTAAATATATACTCCCTCCAGTCC 58.467 40.741 0.00 0.00 0.00 3.85
424 425 8.465971 ACTTAAATATATACTCCCTCCAGTCCT 58.534 37.037 0.00 0.00 0.00 3.85
425 426 9.327731 CTTAAATATATACTCCCTCCAGTCCTT 57.672 37.037 0.00 0.00 0.00 3.36
426 427 9.684702 TTAAATATATACTCCCTCCAGTCCTTT 57.315 33.333 0.00 0.00 0.00 3.11
427 428 8.582891 AAATATATACTCCCTCCAGTCCTTTT 57.417 34.615 0.00 0.00 0.00 2.27
428 429 8.582891 AATATATACTCCCTCCAGTCCTTTTT 57.417 34.615 0.00 0.00 0.00 1.94
429 430 9.684702 AATATATACTCCCTCCAGTCCTTTTTA 57.315 33.333 0.00 0.00 0.00 1.52
430 431 5.959583 ATACTCCCTCCAGTCCTTTTTAG 57.040 43.478 0.00 0.00 0.00 1.85
431 432 3.599348 ACTCCCTCCAGTCCTTTTTAGT 58.401 45.455 0.00 0.00 0.00 2.24
432 433 3.981375 ACTCCCTCCAGTCCTTTTTAGTT 59.019 43.478 0.00 0.00 0.00 2.24
433 434 4.415846 ACTCCCTCCAGTCCTTTTTAGTTT 59.584 41.667 0.00 0.00 0.00 2.66
434 435 4.725490 TCCCTCCAGTCCTTTTTAGTTTG 58.275 43.478 0.00 0.00 0.00 2.93
435 436 3.255888 CCCTCCAGTCCTTTTTAGTTTGC 59.744 47.826 0.00 0.00 0.00 3.68
436 437 3.888930 CCTCCAGTCCTTTTTAGTTTGCA 59.111 43.478 0.00 0.00 0.00 4.08
437 438 4.524328 CCTCCAGTCCTTTTTAGTTTGCAT 59.476 41.667 0.00 0.00 0.00 3.96
438 439 5.710099 CCTCCAGTCCTTTTTAGTTTGCATA 59.290 40.000 0.00 0.00 0.00 3.14
439 440 6.378280 CCTCCAGTCCTTTTTAGTTTGCATAT 59.622 38.462 0.00 0.00 0.00 1.78
440 441 7.093771 CCTCCAGTCCTTTTTAGTTTGCATATT 60.094 37.037 0.00 0.00 0.00 1.28
441 442 8.871629 TCCAGTCCTTTTTAGTTTGCATATTA 57.128 30.769 0.00 0.00 0.00 0.98
442 443 8.956426 TCCAGTCCTTTTTAGTTTGCATATTAG 58.044 33.333 0.00 0.00 0.00 1.73
443 444 8.956426 CCAGTCCTTTTTAGTTTGCATATTAGA 58.044 33.333 0.00 0.00 0.00 2.10
455 456 9.236006 AGTTTGCATATTAGATTTGTCTGAAGT 57.764 29.630 0.00 0.00 0.00 3.01
456 457 9.495754 GTTTGCATATTAGATTTGTCTGAAGTC 57.504 33.333 0.00 0.00 0.00 3.01
457 458 8.791327 TTGCATATTAGATTTGTCTGAAGTCA 57.209 30.769 0.00 0.00 0.00 3.41
458 459 8.791327 TGCATATTAGATTTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 0.00 3.18
459 460 8.886719 TGCATATTAGATTTGTCTGAAGTCAAG 58.113 33.333 0.00 0.00 0.00 3.02
460 461 7.854916 GCATATTAGATTTGTCTGAAGTCAAGC 59.145 37.037 0.00 0.00 0.00 4.01
461 462 6.749923 ATTAGATTTGTCTGAAGTCAAGCC 57.250 37.500 0.00 0.00 0.00 4.35
462 463 4.363991 AGATTTGTCTGAAGTCAAGCCT 57.636 40.909 0.00 0.00 0.00 4.58
463 464 4.322567 AGATTTGTCTGAAGTCAAGCCTC 58.677 43.478 0.00 0.00 0.00 4.70
464 465 3.558931 TTTGTCTGAAGTCAAGCCTCA 57.441 42.857 0.00 0.00 0.00 3.86
465 466 3.777106 TTGTCTGAAGTCAAGCCTCAT 57.223 42.857 0.00 0.00 0.00 2.90
466 467 4.890158 TTGTCTGAAGTCAAGCCTCATA 57.110 40.909 0.00 0.00 0.00 2.15
467 468 4.890158 TGTCTGAAGTCAAGCCTCATAA 57.110 40.909 0.00 0.00 0.00 1.90
468 469 5.227569 TGTCTGAAGTCAAGCCTCATAAA 57.772 39.130 0.00 0.00 0.00 1.40
469 470 5.240891 TGTCTGAAGTCAAGCCTCATAAAG 58.759 41.667 0.00 0.00 0.00 1.85
470 471 5.221722 TGTCTGAAGTCAAGCCTCATAAAGT 60.222 40.000 0.00 0.00 0.00 2.66
471 472 5.703130 GTCTGAAGTCAAGCCTCATAAAGTT 59.297 40.000 0.00 0.00 0.00 2.66
472 473 6.205658 GTCTGAAGTCAAGCCTCATAAAGTTT 59.794 38.462 0.00 0.00 0.00 2.66
473 474 6.205464 TCTGAAGTCAAGCCTCATAAAGTTTG 59.795 38.462 0.00 0.00 0.00 2.93
474 475 6.061441 TGAAGTCAAGCCTCATAAAGTTTGA 58.939 36.000 0.00 0.00 0.00 2.69
475 476 5.948992 AGTCAAGCCTCATAAAGTTTGAC 57.051 39.130 10.54 10.54 42.37 3.18
476 477 4.762251 AGTCAAGCCTCATAAAGTTTGACC 59.238 41.667 13.71 0.72 42.68 4.02
477 478 4.518970 GTCAAGCCTCATAAAGTTTGACCA 59.481 41.667 8.09 0.00 39.44 4.02
478 479 5.009610 GTCAAGCCTCATAAAGTTTGACCAA 59.990 40.000 8.09 0.00 39.44 3.67
479 480 5.009610 TCAAGCCTCATAAAGTTTGACCAAC 59.990 40.000 0.00 0.00 35.32 3.77
534 535 7.588143 ATGAAATCAATACTAGTAGATGCGC 57.412 36.000 8.85 0.00 0.00 6.09
535 536 5.926542 TGAAATCAATACTAGTAGATGCGCC 59.073 40.000 4.18 0.00 0.00 6.53
536 537 5.468540 AATCAATACTAGTAGATGCGCCA 57.531 39.130 4.18 0.00 0.00 5.69
537 538 5.667539 ATCAATACTAGTAGATGCGCCAT 57.332 39.130 4.18 0.00 0.00 4.40
538 539 4.809673 TCAATACTAGTAGATGCGCCATG 58.190 43.478 4.18 0.00 0.00 3.66
539 540 4.522789 TCAATACTAGTAGATGCGCCATGA 59.477 41.667 4.18 0.00 0.00 3.07
540 541 2.802787 ACTAGTAGATGCGCCATGAC 57.197 50.000 4.18 0.00 0.00 3.06
541 542 2.311463 ACTAGTAGATGCGCCATGACT 58.689 47.619 4.18 6.13 0.00 3.41
542 543 2.695666 ACTAGTAGATGCGCCATGACTT 59.304 45.455 4.18 0.00 0.00 3.01
543 544 3.889538 ACTAGTAGATGCGCCATGACTTA 59.110 43.478 4.18 0.00 0.00 2.24
544 545 3.819564 AGTAGATGCGCCATGACTTAA 57.180 42.857 4.18 0.00 0.00 1.85
545 546 4.137116 AGTAGATGCGCCATGACTTAAA 57.863 40.909 4.18 0.00 0.00 1.52
546 547 4.122776 AGTAGATGCGCCATGACTTAAAG 58.877 43.478 4.18 0.00 0.00 1.85
547 548 2.991250 AGATGCGCCATGACTTAAAGT 58.009 42.857 4.18 0.00 0.00 2.66
548 549 3.347216 AGATGCGCCATGACTTAAAGTT 58.653 40.909 4.18 0.00 0.00 2.66
549 550 3.758554 AGATGCGCCATGACTTAAAGTTT 59.241 39.130 4.18 0.00 0.00 2.66
550 551 3.552604 TGCGCCATGACTTAAAGTTTC 57.447 42.857 4.18 0.00 0.00 2.78
551 552 2.881513 TGCGCCATGACTTAAAGTTTCA 59.118 40.909 4.18 0.00 0.00 2.69
552 553 3.505680 TGCGCCATGACTTAAAGTTTCAT 59.494 39.130 4.18 0.00 0.00 2.57
553 554 3.853671 GCGCCATGACTTAAAGTTTCATG 59.146 43.478 0.00 7.90 44.20 3.07
554 555 4.615912 GCGCCATGACTTAAAGTTTCATGT 60.616 41.667 12.19 2.30 43.43 3.21
555 556 5.460646 CGCCATGACTTAAAGTTTCATGTT 58.539 37.500 12.19 0.00 43.43 2.71
556 557 5.343058 CGCCATGACTTAAAGTTTCATGTTG 59.657 40.000 12.19 3.43 43.43 3.33
557 558 6.215845 GCCATGACTTAAAGTTTCATGTTGT 58.784 36.000 12.19 0.00 43.43 3.32
558 559 7.367285 GCCATGACTTAAAGTTTCATGTTGTA 58.633 34.615 12.19 0.00 43.43 2.41
559 560 8.028938 GCCATGACTTAAAGTTTCATGTTGTAT 58.971 33.333 12.19 0.00 43.43 2.29
659 660 9.781834 TTTTTATATGCAGAGTAAAAATGACCG 57.218 29.630 16.22 0.00 34.30 4.79
660 661 7.490962 TTATATGCAGAGTAAAAATGACCGG 57.509 36.000 0.00 0.00 0.00 5.28
661 662 3.410631 TGCAGAGTAAAAATGACCGGA 57.589 42.857 9.46 0.00 0.00 5.14
662 663 3.334691 TGCAGAGTAAAAATGACCGGAG 58.665 45.455 9.46 0.00 0.00 4.63
680 681 4.471548 CGGAGGGAGTACCATATATAGGG 58.528 52.174 11.89 11.89 43.89 3.53
785 788 0.318445 CCTCGAGTCAACGGTCGTTT 60.318 55.000 12.31 0.00 36.00 3.60
797 800 2.249692 GTCGTTTCCGGCCAATCAA 58.750 52.632 2.24 0.00 30.83 2.57
801 804 1.807742 CGTTTCCGGCCAATCAAACTA 59.192 47.619 2.24 0.00 0.00 2.24
866 869 1.167851 CCAGTCCACAAACGCATCAT 58.832 50.000 0.00 0.00 0.00 2.45
878 881 1.147473 CGCATCATAGCCGTGCATTA 58.853 50.000 0.00 0.00 38.75 1.90
999 1002 1.193874 CGAGCTAAACGTTTGGTGACC 59.806 52.381 23.46 7.63 0.00 4.02
1339 1342 3.898509 GCAACCACAAGCACCGCA 61.899 61.111 0.00 0.00 0.00 5.69
1371 1374 3.766691 ATCGGGTTCGTGGTCGGG 61.767 66.667 0.00 0.00 37.69 5.14
1389 1392 3.390521 TCCCTCGCAGGCGTCATT 61.391 61.111 13.83 0.00 40.74 2.57
1422 1425 4.373116 TCCGTGCTGTTCCGGCTC 62.373 66.667 0.00 0.00 43.87 4.70
1773 1782 4.778143 ATCCGGCACCGCAACCTC 62.778 66.667 2.83 0.00 38.24 3.85
2305 2314 4.947147 GCCGGGTGGTGCAGAACA 62.947 66.667 2.18 0.00 37.67 3.18
2640 3000 1.117150 TCGATAAAGACCGGGAAGGG 58.883 55.000 6.32 0.00 46.96 3.95
2803 4801 2.673893 CGTTACCTGCAGTGCACTGATA 60.674 50.000 43.32 30.37 46.59 2.15
2857 4855 1.272490 TCTTGATTGGAACGAGTCGCT 59.728 47.619 13.59 0.00 0.00 4.93
2867 4869 1.807573 CGAGTCGCTCCAAGCTTCC 60.808 63.158 0.00 0.00 39.60 3.46
2884 4893 1.583556 TCCTATGCATGGTCTGGTGT 58.416 50.000 10.16 0.00 0.00 4.16
3064 5106 0.889638 TCGCGCCTCCTCTATCGAAT 60.890 55.000 0.00 0.00 0.00 3.34
3110 5152 2.742053 GCGAAAATCTACAGGTTCAGCA 59.258 45.455 0.00 0.00 0.00 4.41
3135 5177 1.876714 CGACGGTCATTAGTGCGGG 60.877 63.158 9.10 0.00 0.00 6.13
3234 5276 4.540359 AAATGCCACACCTACGTACTTA 57.460 40.909 0.00 0.00 0.00 2.24
3252 5294 3.633986 ACTTAGTTACGTAATCCCTCCGG 59.366 47.826 11.86 0.00 0.00 5.14
3255 5297 1.067669 GTTACGTAATCCCTCCGGTCC 59.932 57.143 11.86 0.00 0.00 4.46
3267 5309 2.289257 CCTCCGGTCCTTTTTAGTTCGT 60.289 50.000 0.00 0.00 0.00 3.85
3413 5458 0.767998 CCCCCTTCTCCAGCTAATCC 59.232 60.000 0.00 0.00 0.00 3.01
3414 5459 0.767998 CCCCTTCTCCAGCTAATCCC 59.232 60.000 0.00 0.00 0.00 3.85
3415 5460 0.767998 CCCTTCTCCAGCTAATCCCC 59.232 60.000 0.00 0.00 0.00 4.81
3416 5461 1.697291 CCCTTCTCCAGCTAATCCCCT 60.697 57.143 0.00 0.00 0.00 4.79
3417 5462 1.696884 CCTTCTCCAGCTAATCCCCTC 59.303 57.143 0.00 0.00 0.00 4.30
3418 5463 1.342819 CTTCTCCAGCTAATCCCCTCG 59.657 57.143 0.00 0.00 0.00 4.63
3419 5464 1.115930 TCTCCAGCTAATCCCCTCGC 61.116 60.000 0.00 0.00 0.00 5.03
3420 5465 2.105806 CTCCAGCTAATCCCCTCGCC 62.106 65.000 0.00 0.00 0.00 5.54
3421 5466 2.029666 CAGCTAATCCCCTCGCCG 59.970 66.667 0.00 0.00 0.00 6.46
3422 5467 3.930012 AGCTAATCCCCTCGCCGC 61.930 66.667 0.00 0.00 0.00 6.53
3423 5468 4.990553 GCTAATCCCCTCGCCGCC 62.991 72.222 0.00 0.00 0.00 6.13
3424 5469 4.664677 CTAATCCCCTCGCCGCCG 62.665 72.222 0.00 0.00 0.00 6.46
3445 5490 3.948719 GAGGCCACAACCGGGTGA 61.949 66.667 30.18 0.00 41.32 4.02
3446 5491 3.901797 GAGGCCACAACCGGGTGAG 62.902 68.421 30.18 19.95 41.32 3.51
3449 5494 3.246112 CCACAACCGGGTGAGGGA 61.246 66.667 30.18 0.00 41.32 4.20
3450 5495 2.347490 CACAACCGGGTGAGGGAG 59.653 66.667 30.18 6.37 41.32 4.30
3451 5496 2.122547 ACAACCGGGTGAGGGAGT 60.123 61.111 30.18 0.00 35.02 3.85
3452 5497 2.214920 ACAACCGGGTGAGGGAGTC 61.215 63.158 30.18 0.00 35.02 3.36
3453 5498 2.606826 AACCGGGTGAGGGAGTCC 60.607 66.667 6.32 0.00 35.02 3.85
3455 5500 3.077556 CCGGGTGAGGGAGTCCTG 61.078 72.222 9.58 0.00 45.05 3.86
3456 5501 2.037367 CGGGTGAGGGAGTCCTGA 59.963 66.667 9.58 0.00 45.05 3.86
3457 5502 1.609501 CGGGTGAGGGAGTCCTGAA 60.610 63.158 9.58 0.00 45.05 3.02
3458 5503 0.978146 CGGGTGAGGGAGTCCTGAAT 60.978 60.000 9.58 0.00 45.05 2.57
3459 5504 1.290134 GGGTGAGGGAGTCCTGAATT 58.710 55.000 9.58 0.00 45.05 2.17
3460 5505 2.478292 GGGTGAGGGAGTCCTGAATTA 58.522 52.381 9.58 0.00 45.05 1.40
3461 5506 2.436173 GGGTGAGGGAGTCCTGAATTAG 59.564 54.545 9.58 0.00 45.05 1.73
3462 5507 2.436173 GGTGAGGGAGTCCTGAATTAGG 59.564 54.545 9.58 0.00 45.05 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.271652 ACGGGTTCCATGCAATGTGTA 60.272 47.619 0.00 0.00 44.81 2.90
2 3 0.539438 ACGGGTTCCATGCAATGTGT 60.539 50.000 0.00 0.00 44.81 3.72
3 4 0.171007 GACGGGTTCCATGCAATGTG 59.829 55.000 0.00 0.00 44.81 3.21
4 5 0.965363 GGACGGGTTCCATGCAATGT 60.965 55.000 0.00 0.00 44.81 2.71
5 6 1.809207 GGACGGGTTCCATGCAATG 59.191 57.895 0.00 0.00 45.10 2.82
6 7 4.337013 GGACGGGTTCCATGCAAT 57.663 55.556 0.00 0.00 45.10 3.56
13 14 1.271163 TGAAATGTGAGGACGGGTTCC 60.271 52.381 0.00 0.00 46.33 3.62
14 15 1.804748 GTGAAATGTGAGGACGGGTTC 59.195 52.381 0.00 0.00 0.00 3.62
15 16 1.142060 TGTGAAATGTGAGGACGGGTT 59.858 47.619 0.00 0.00 0.00 4.11
16 17 0.762418 TGTGAAATGTGAGGACGGGT 59.238 50.000 0.00 0.00 0.00 5.28
17 18 1.890876 TTGTGAAATGTGAGGACGGG 58.109 50.000 0.00 0.00 0.00 5.28
18 19 4.000325 TGTATTGTGAAATGTGAGGACGG 59.000 43.478 0.00 0.00 0.00 4.79
19 20 5.605564 TTGTATTGTGAAATGTGAGGACG 57.394 39.130 0.00 0.00 0.00 4.79
20 21 6.381801 CCTTTGTATTGTGAAATGTGAGGAC 58.618 40.000 0.00 0.00 0.00 3.85
21 22 5.476599 CCCTTTGTATTGTGAAATGTGAGGA 59.523 40.000 0.00 0.00 0.00 3.71
22 23 5.336690 CCCCTTTGTATTGTGAAATGTGAGG 60.337 44.000 0.00 0.00 0.00 3.86
23 24 5.476599 TCCCCTTTGTATTGTGAAATGTGAG 59.523 40.000 0.00 0.00 0.00 3.51
24 25 5.242838 GTCCCCTTTGTATTGTGAAATGTGA 59.757 40.000 0.00 0.00 0.00 3.58
25 26 5.010516 TGTCCCCTTTGTATTGTGAAATGTG 59.989 40.000 0.00 0.00 0.00 3.21
26 27 5.144100 TGTCCCCTTTGTATTGTGAAATGT 58.856 37.500 0.00 0.00 0.00 2.71
27 28 5.720371 TGTCCCCTTTGTATTGTGAAATG 57.280 39.130 0.00 0.00 0.00 2.32
28 29 6.521162 GTTTGTCCCCTTTGTATTGTGAAAT 58.479 36.000 0.00 0.00 0.00 2.17
29 30 5.450688 CGTTTGTCCCCTTTGTATTGTGAAA 60.451 40.000 0.00 0.00 0.00 2.69
30 31 4.036971 CGTTTGTCCCCTTTGTATTGTGAA 59.963 41.667 0.00 0.00 0.00 3.18
31 32 3.566322 CGTTTGTCCCCTTTGTATTGTGA 59.434 43.478 0.00 0.00 0.00 3.58
32 33 3.316868 ACGTTTGTCCCCTTTGTATTGTG 59.683 43.478 0.00 0.00 0.00 3.33
33 34 3.558033 ACGTTTGTCCCCTTTGTATTGT 58.442 40.909 0.00 0.00 0.00 2.71
34 35 3.566322 TGACGTTTGTCCCCTTTGTATTG 59.434 43.478 0.00 0.00 44.86 1.90
35 36 3.818773 CTGACGTTTGTCCCCTTTGTATT 59.181 43.478 0.00 0.00 44.86 1.89
36 37 3.071892 TCTGACGTTTGTCCCCTTTGTAT 59.928 43.478 0.00 0.00 44.86 2.29
37 38 2.435069 TCTGACGTTTGTCCCCTTTGTA 59.565 45.455 0.00 0.00 44.86 2.41
38 39 1.210967 TCTGACGTTTGTCCCCTTTGT 59.789 47.619 0.00 0.00 44.86 2.83
39 40 1.961793 TCTGACGTTTGTCCCCTTTG 58.038 50.000 0.00 0.00 44.86 2.77
40 41 2.572290 CTTCTGACGTTTGTCCCCTTT 58.428 47.619 0.00 0.00 44.86 3.11
41 42 1.202770 CCTTCTGACGTTTGTCCCCTT 60.203 52.381 0.00 0.00 44.86 3.95
42 43 0.396811 CCTTCTGACGTTTGTCCCCT 59.603 55.000 0.00 0.00 44.86 4.79
43 44 1.235281 GCCTTCTGACGTTTGTCCCC 61.235 60.000 0.00 0.00 44.86 4.81
44 45 0.250338 AGCCTTCTGACGTTTGTCCC 60.250 55.000 0.00 0.00 44.86 4.46
45 46 1.264288 CAAGCCTTCTGACGTTTGTCC 59.736 52.381 0.00 0.00 44.86 4.02
46 47 2.210116 TCAAGCCTTCTGACGTTTGTC 58.790 47.619 0.00 0.00 45.71 3.18
47 48 2.213499 CTCAAGCCTTCTGACGTTTGT 58.787 47.619 0.00 0.00 0.00 2.83
48 49 1.532868 CCTCAAGCCTTCTGACGTTTG 59.467 52.381 0.00 0.00 0.00 2.93
49 50 1.141053 ACCTCAAGCCTTCTGACGTTT 59.859 47.619 0.00 0.00 0.00 3.60
50 51 0.759346 ACCTCAAGCCTTCTGACGTT 59.241 50.000 0.00 0.00 0.00 3.99
51 52 0.034059 CACCTCAAGCCTTCTGACGT 59.966 55.000 0.00 0.00 0.00 4.34
52 53 1.294659 GCACCTCAAGCCTTCTGACG 61.295 60.000 0.00 0.00 0.00 4.35
53 54 2.549332 GCACCTCAAGCCTTCTGAC 58.451 57.895 0.00 0.00 0.00 3.51
61 62 0.107945 ATTCTCTCGGCACCTCAAGC 60.108 55.000 0.00 0.00 0.00 4.01
62 63 2.393271 AATTCTCTCGGCACCTCAAG 57.607 50.000 0.00 0.00 0.00 3.02
63 64 2.859165 AAATTCTCTCGGCACCTCAA 57.141 45.000 0.00 0.00 0.00 3.02
64 65 4.081142 TCAATAAATTCTCTCGGCACCTCA 60.081 41.667 0.00 0.00 0.00 3.86
65 66 4.271291 GTCAATAAATTCTCTCGGCACCTC 59.729 45.833 0.00 0.00 0.00 3.85
66 67 4.192317 GTCAATAAATTCTCTCGGCACCT 58.808 43.478 0.00 0.00 0.00 4.00
67 68 3.312697 GGTCAATAAATTCTCTCGGCACC 59.687 47.826 0.00 0.00 0.00 5.01
68 69 3.312697 GGGTCAATAAATTCTCTCGGCAC 59.687 47.826 0.00 0.00 0.00 5.01
69 70 3.054728 TGGGTCAATAAATTCTCTCGGCA 60.055 43.478 0.00 0.00 0.00 5.69
70 71 3.541632 TGGGTCAATAAATTCTCTCGGC 58.458 45.455 0.00 0.00 0.00 5.54
71 72 5.065218 CACTTGGGTCAATAAATTCTCTCGG 59.935 44.000 0.00 0.00 0.00 4.63
72 73 5.065218 CCACTTGGGTCAATAAATTCTCTCG 59.935 44.000 0.00 0.00 0.00 4.04
73 74 5.163612 GCCACTTGGGTCAATAAATTCTCTC 60.164 44.000 0.00 0.00 39.65 3.20
74 75 4.706962 GCCACTTGGGTCAATAAATTCTCT 59.293 41.667 0.00 0.00 39.65 3.10
75 76 4.462483 TGCCACTTGGGTCAATAAATTCTC 59.538 41.667 0.00 0.00 39.65 2.87
76 77 4.415596 TGCCACTTGGGTCAATAAATTCT 58.584 39.130 0.00 0.00 39.65 2.40
77 78 4.799564 TGCCACTTGGGTCAATAAATTC 57.200 40.909 0.00 0.00 39.65 2.17
78 79 4.592778 ACTTGCCACTTGGGTCAATAAATT 59.407 37.500 0.00 0.00 39.65 1.82
79 80 4.021192 CACTTGCCACTTGGGTCAATAAAT 60.021 41.667 0.00 0.00 39.65 1.40
80 81 3.320541 CACTTGCCACTTGGGTCAATAAA 59.679 43.478 0.00 0.00 39.65 1.40
81 82 2.890311 CACTTGCCACTTGGGTCAATAA 59.110 45.455 0.00 0.00 39.65 1.40
82 83 2.107378 TCACTTGCCACTTGGGTCAATA 59.893 45.455 0.00 0.00 39.65 1.90
83 84 1.133513 TCACTTGCCACTTGGGTCAAT 60.134 47.619 0.00 0.00 39.65 2.57
84 85 0.257328 TCACTTGCCACTTGGGTCAA 59.743 50.000 0.00 0.00 39.65 3.18
85 86 0.257328 TTCACTTGCCACTTGGGTCA 59.743 50.000 0.00 0.00 39.65 4.02
86 87 1.620822 ATTCACTTGCCACTTGGGTC 58.379 50.000 0.00 0.00 39.65 4.46
87 88 2.086610 AATTCACTTGCCACTTGGGT 57.913 45.000 0.00 0.00 39.65 4.51
88 89 3.157087 ACTAATTCACTTGCCACTTGGG 58.843 45.455 0.00 0.00 40.85 4.12
89 90 3.820467 TGACTAATTCACTTGCCACTTGG 59.180 43.478 0.00 0.00 38.53 3.61
90 91 5.633830 ATGACTAATTCACTTGCCACTTG 57.366 39.130 0.00 0.00 36.92 3.16
91 92 6.711277 TCTATGACTAATTCACTTGCCACTT 58.289 36.000 0.00 0.00 36.92 3.16
92 93 6.299805 TCTATGACTAATTCACTTGCCACT 57.700 37.500 0.00 0.00 36.92 4.00
93 94 6.989169 AGATCTATGACTAATTCACTTGCCAC 59.011 38.462 0.00 0.00 36.92 5.01
94 95 7.129457 AGATCTATGACTAATTCACTTGCCA 57.871 36.000 0.00 0.00 36.92 4.92
95 96 6.648725 GGAGATCTATGACTAATTCACTTGCC 59.351 42.308 0.00 0.00 36.92 4.52
96 97 7.212976 TGGAGATCTATGACTAATTCACTTGC 58.787 38.462 0.00 0.00 36.92 4.01
97 98 9.258826 CTTGGAGATCTATGACTAATTCACTTG 57.741 37.037 0.00 0.00 36.92 3.16
98 99 8.986991 ACTTGGAGATCTATGACTAATTCACTT 58.013 33.333 0.00 0.00 36.92 3.16
99 100 8.420222 CACTTGGAGATCTATGACTAATTCACT 58.580 37.037 0.00 0.00 36.92 3.41
100 101 8.417106 TCACTTGGAGATCTATGACTAATTCAC 58.583 37.037 0.00 0.00 36.92 3.18
101 102 8.539117 TCACTTGGAGATCTATGACTAATTCA 57.461 34.615 0.00 0.00 39.11 2.57
102 103 9.255304 GTTCACTTGGAGATCTATGACTAATTC 57.745 37.037 0.00 0.00 0.00 2.17
103 104 8.762645 TGTTCACTTGGAGATCTATGACTAATT 58.237 33.333 0.00 0.00 0.00 1.40
104 105 8.200792 GTGTTCACTTGGAGATCTATGACTAAT 58.799 37.037 0.00 0.00 0.00 1.73
105 106 7.548097 GTGTTCACTTGGAGATCTATGACTAA 58.452 38.462 0.00 0.00 0.00 2.24
106 107 6.183360 CGTGTTCACTTGGAGATCTATGACTA 60.183 42.308 0.00 0.00 0.00 2.59
107 108 5.393569 CGTGTTCACTTGGAGATCTATGACT 60.394 44.000 0.00 0.00 0.00 3.41
108 109 4.800993 CGTGTTCACTTGGAGATCTATGAC 59.199 45.833 0.00 0.00 0.00 3.06
109 110 4.678044 GCGTGTTCACTTGGAGATCTATGA 60.678 45.833 0.00 0.00 0.00 2.15
110 111 3.553511 GCGTGTTCACTTGGAGATCTATG 59.446 47.826 0.00 0.00 0.00 2.23
111 112 3.735208 CGCGTGTTCACTTGGAGATCTAT 60.735 47.826 0.00 0.00 0.00 1.98
112 113 2.415491 CGCGTGTTCACTTGGAGATCTA 60.415 50.000 0.00 0.00 0.00 1.98
113 114 1.670087 CGCGTGTTCACTTGGAGATCT 60.670 52.381 0.00 0.00 0.00 2.75
114 115 0.716108 CGCGTGTTCACTTGGAGATC 59.284 55.000 0.00 0.00 0.00 2.75
115 116 0.033504 ACGCGTGTTCACTTGGAGAT 59.966 50.000 12.93 0.00 0.00 2.75
116 117 0.669619 TACGCGTGTTCACTTGGAGA 59.330 50.000 24.59 0.00 0.00 3.71
117 118 0.782384 GTACGCGTGTTCACTTGGAG 59.218 55.000 24.59 0.00 0.00 3.86
118 119 0.598158 GGTACGCGTGTTCACTTGGA 60.598 55.000 24.59 0.00 0.00 3.53
119 120 0.599204 AGGTACGCGTGTTCACTTGG 60.599 55.000 24.59 0.00 0.00 3.61
120 121 1.214367 AAGGTACGCGTGTTCACTTG 58.786 50.000 24.59 0.00 0.00 3.16
121 122 2.608752 CCTAAGGTACGCGTGTTCACTT 60.609 50.000 24.59 19.00 0.00 3.16
122 123 1.068055 CCTAAGGTACGCGTGTTCACT 60.068 52.381 24.59 9.53 0.00 3.41
123 124 1.068333 TCCTAAGGTACGCGTGTTCAC 60.068 52.381 24.59 12.13 0.00 3.18
124 125 1.200716 CTCCTAAGGTACGCGTGTTCA 59.799 52.381 24.59 0.00 0.00 3.18
125 126 1.468736 CCTCCTAAGGTACGCGTGTTC 60.469 57.143 24.59 12.04 37.94 3.18
126 127 0.529378 CCTCCTAAGGTACGCGTGTT 59.471 55.000 24.59 14.86 37.94 3.32
127 128 0.322816 TCCTCCTAAGGTACGCGTGT 60.323 55.000 24.59 6.91 43.82 4.49
128 129 0.381089 CTCCTCCTAAGGTACGCGTG 59.619 60.000 24.59 3.02 43.82 5.34
129 130 1.382692 GCTCCTCCTAAGGTACGCGT 61.383 60.000 19.17 19.17 43.82 6.01
130 131 1.359475 GCTCCTCCTAAGGTACGCG 59.641 63.158 3.53 3.53 43.82 6.01
131 132 0.386113 CTGCTCCTCCTAAGGTACGC 59.614 60.000 0.00 0.00 43.82 4.42
132 133 1.033574 CCTGCTCCTCCTAAGGTACG 58.966 60.000 0.00 0.00 43.82 3.67
133 134 1.343176 ACCCTGCTCCTCCTAAGGTAC 60.343 57.143 0.00 0.00 43.82 3.34
134 135 1.016415 ACCCTGCTCCTCCTAAGGTA 58.984 55.000 0.00 0.00 43.82 3.08
135 136 1.016415 TACCCTGCTCCTCCTAAGGT 58.984 55.000 0.00 0.00 43.82 3.50
136 137 1.415200 GTACCCTGCTCCTCCTAAGG 58.585 60.000 0.00 0.00 44.89 2.69
137 138 1.415200 GGTACCCTGCTCCTCCTAAG 58.585 60.000 0.00 0.00 0.00 2.18
138 139 3.629220 GGTACCCTGCTCCTCCTAA 57.371 57.895 0.00 0.00 0.00 2.69
147 148 9.536554 TTGAAAGATCATATGAGGGTACCCTGC 62.537 44.444 38.71 26.77 43.03 4.85
148 149 6.183361 TTGAAAGATCATATGAGGGTACCCTG 60.183 42.308 38.71 23.43 43.03 4.45
149 150 5.911178 TTGAAAGATCATATGAGGGTACCCT 59.089 40.000 34.47 34.47 43.03 4.34
150 151 6.187727 TTGAAAGATCATATGAGGGTACCC 57.812 41.667 24.65 24.65 43.03 3.69
151 152 7.175641 CCATTTGAAAGATCATATGAGGGTACC 59.824 40.741 11.78 2.17 43.57 3.34
152 153 7.721399 ACCATTTGAAAGATCATATGAGGGTAC 59.279 37.037 11.78 3.73 43.57 3.34
153 154 7.720957 CACCATTTGAAAGATCATATGAGGGTA 59.279 37.037 11.78 0.00 43.57 3.69
154 155 6.548622 CACCATTTGAAAGATCATATGAGGGT 59.451 38.462 11.78 0.00 43.57 4.34
155 156 6.516194 GCACCATTTGAAAGATCATATGAGGG 60.516 42.308 11.78 0.00 43.57 4.30
156 157 6.444633 GCACCATTTGAAAGATCATATGAGG 58.555 40.000 11.78 5.28 43.57 3.86
157 158 6.017687 TCGCACCATTTGAAAGATCATATGAG 60.018 38.462 11.78 0.00 43.57 2.90
158 159 5.821995 TCGCACCATTTGAAAGATCATATGA 59.178 36.000 8.10 8.10 43.57 2.15
159 160 5.911280 GTCGCACCATTTGAAAGATCATATG 59.089 40.000 0.00 0.00 41.76 1.78
160 161 5.277490 CGTCGCACCATTTGAAAGATCATAT 60.277 40.000 0.00 0.00 34.96 1.78
161 162 4.033932 CGTCGCACCATTTGAAAGATCATA 59.966 41.667 0.00 0.00 34.96 2.15
162 163 3.181507 CGTCGCACCATTTGAAAGATCAT 60.182 43.478 0.00 0.00 34.96 2.45
163 164 2.159430 CGTCGCACCATTTGAAAGATCA 59.841 45.455 0.00 0.00 0.00 2.92
164 165 2.415168 TCGTCGCACCATTTGAAAGATC 59.585 45.455 0.00 0.00 0.00 2.75
165 166 2.159627 GTCGTCGCACCATTTGAAAGAT 59.840 45.455 0.00 0.00 0.00 2.40
166 167 1.529438 GTCGTCGCACCATTTGAAAGA 59.471 47.619 0.00 0.00 0.00 2.52
167 168 1.399727 GGTCGTCGCACCATTTGAAAG 60.400 52.381 8.44 0.00 36.32 2.62
168 169 0.589223 GGTCGTCGCACCATTTGAAA 59.411 50.000 8.44 0.00 36.32 2.69
169 170 0.533085 TGGTCGTCGCACCATTTGAA 60.533 50.000 11.11 0.00 41.84 2.69
170 171 1.069935 TGGTCGTCGCACCATTTGA 59.930 52.632 11.11 0.00 41.84 2.69
171 172 3.649096 TGGTCGTCGCACCATTTG 58.351 55.556 11.11 0.00 41.84 2.32
200 201 1.135859 CCATCAACAAGTGCTTCGAGC 60.136 52.381 0.58 0.58 42.82 5.03
201 202 2.158449 GTCCATCAACAAGTGCTTCGAG 59.842 50.000 0.00 0.00 0.00 4.04
202 203 2.143122 GTCCATCAACAAGTGCTTCGA 58.857 47.619 0.00 0.00 0.00 3.71
203 204 1.136252 CGTCCATCAACAAGTGCTTCG 60.136 52.381 0.00 0.00 0.00 3.79
204 205 2.143122 TCGTCCATCAACAAGTGCTTC 58.857 47.619 0.00 0.00 0.00 3.86
205 206 2.254546 TCGTCCATCAACAAGTGCTT 57.745 45.000 0.00 0.00 0.00 3.91
206 207 2.350522 GATCGTCCATCAACAAGTGCT 58.649 47.619 0.00 0.00 0.00 4.40
207 208 1.061131 CGATCGTCCATCAACAAGTGC 59.939 52.381 7.03 0.00 0.00 4.40
208 209 1.061131 GCGATCGTCCATCAACAAGTG 59.939 52.381 17.81 0.00 0.00 3.16
209 210 1.359848 GCGATCGTCCATCAACAAGT 58.640 50.000 17.81 0.00 0.00 3.16
210 211 0.298707 CGCGATCGTCCATCAACAAG 59.701 55.000 17.81 0.00 0.00 3.16
211 212 1.692148 GCGCGATCGTCCATCAACAA 61.692 55.000 17.81 0.00 38.14 2.83
212 213 2.164663 GCGCGATCGTCCATCAACA 61.165 57.895 17.81 0.00 38.14 3.33
213 214 1.812214 GAGCGCGATCGTCCATCAAC 61.812 60.000 17.81 0.00 38.14 3.18
214 215 1.588932 GAGCGCGATCGTCCATCAA 60.589 57.895 17.81 0.00 38.14 2.57
215 216 2.026157 GAGCGCGATCGTCCATCA 59.974 61.111 17.81 0.00 38.14 3.07
216 217 3.094058 CGAGCGCGATCGTCCATC 61.094 66.667 35.85 2.31 40.82 3.51
223 224 3.032609 CCATGGACGAGCGCGATC 61.033 66.667 19.05 15.67 41.64 3.69
229 230 2.785258 GTTTCGCCATGGACGAGC 59.215 61.111 23.72 18.56 41.18 5.03
230 231 2.452813 CCGTTTCGCCATGGACGAG 61.453 63.158 21.60 14.32 41.18 4.18
231 232 1.875420 TACCGTTTCGCCATGGACGA 61.875 55.000 21.60 21.83 37.69 4.20
232 233 1.015085 TTACCGTTTCGCCATGGACG 61.015 55.000 18.40 18.60 35.44 4.79
233 234 0.725117 CTTACCGTTTCGCCATGGAC 59.275 55.000 18.40 5.97 0.00 4.02
234 235 1.022451 GCTTACCGTTTCGCCATGGA 61.022 55.000 18.40 0.00 0.00 3.41
235 236 1.427819 GCTTACCGTTTCGCCATGG 59.572 57.895 7.63 7.63 0.00 3.66
236 237 1.427819 GGCTTACCGTTTCGCCATG 59.572 57.895 0.00 0.00 42.06 3.66
237 238 3.899395 GGCTTACCGTTTCGCCAT 58.101 55.556 0.00 0.00 42.06 4.40
247 248 0.788391 CACTGTTCGTTCGGCTTACC 59.212 55.000 0.00 0.00 0.00 2.85
248 249 1.774639 TCACTGTTCGTTCGGCTTAC 58.225 50.000 0.00 0.00 0.00 2.34
249 250 2.034939 TCTTCACTGTTCGTTCGGCTTA 59.965 45.455 0.00 0.00 0.00 3.09
250 251 1.202486 TCTTCACTGTTCGTTCGGCTT 60.202 47.619 0.00 0.00 0.00 4.35
251 252 0.387929 TCTTCACTGTTCGTTCGGCT 59.612 50.000 0.00 0.00 0.00 5.52
252 253 1.429463 ATCTTCACTGTTCGTTCGGC 58.571 50.000 0.00 0.00 0.00 5.54
253 254 4.421058 TGATATCTTCACTGTTCGTTCGG 58.579 43.478 3.98 0.00 0.00 4.30
254 255 6.575083 AATGATATCTTCACTGTTCGTTCG 57.425 37.500 3.98 0.00 37.11 3.95
256 257 9.823647 AGAATAATGATATCTTCACTGTTCGTT 57.176 29.630 3.98 0.00 37.11 3.85
257 258 9.469807 GAGAATAATGATATCTTCACTGTTCGT 57.530 33.333 3.98 0.00 37.11 3.85
258 259 8.920665 GGAGAATAATGATATCTTCACTGTTCG 58.079 37.037 3.98 0.00 37.11 3.95
259 260 8.920665 CGGAGAATAATGATATCTTCACTGTTC 58.079 37.037 3.98 0.00 37.11 3.18
260 261 7.875041 CCGGAGAATAATGATATCTTCACTGTT 59.125 37.037 0.00 0.00 37.11 3.16
261 262 7.015682 ACCGGAGAATAATGATATCTTCACTGT 59.984 37.037 9.46 0.00 37.11 3.55
262 263 7.330454 CACCGGAGAATAATGATATCTTCACTG 59.670 40.741 9.46 3.54 37.11 3.66
263 264 7.382110 CACCGGAGAATAATGATATCTTCACT 58.618 38.462 9.46 0.00 37.11 3.41
264 265 6.091441 GCACCGGAGAATAATGATATCTTCAC 59.909 42.308 9.46 0.00 37.11 3.18
265 266 6.166279 GCACCGGAGAATAATGATATCTTCA 58.834 40.000 9.46 0.00 39.12 3.02
266 267 5.582665 GGCACCGGAGAATAATGATATCTTC 59.417 44.000 9.46 0.00 0.00 2.87
267 268 5.491982 GGCACCGGAGAATAATGATATCTT 58.508 41.667 9.46 0.00 0.00 2.40
268 269 4.382040 CGGCACCGGAGAATAATGATATCT 60.382 45.833 9.46 0.00 35.56 1.98
269 270 3.865745 CGGCACCGGAGAATAATGATATC 59.134 47.826 9.46 0.00 35.56 1.63
270 271 3.513912 TCGGCACCGGAGAATAATGATAT 59.486 43.478 9.46 0.00 40.25 1.63
271 272 2.894765 TCGGCACCGGAGAATAATGATA 59.105 45.455 9.46 0.00 40.25 2.15
272 273 1.691976 TCGGCACCGGAGAATAATGAT 59.308 47.619 9.46 0.00 40.25 2.45
273 274 1.116308 TCGGCACCGGAGAATAATGA 58.884 50.000 9.46 0.00 40.25 2.57
274 275 1.800586 CATCGGCACCGGAGAATAATG 59.199 52.381 9.46 0.45 40.25 1.90
275 276 1.878102 GCATCGGCACCGGAGAATAAT 60.878 52.381 9.46 0.00 40.72 1.28
276 277 0.531974 GCATCGGCACCGGAGAATAA 60.532 55.000 9.46 0.00 40.72 1.40
277 278 1.069090 GCATCGGCACCGGAGAATA 59.931 57.895 9.46 0.00 40.72 1.75
278 279 2.203070 GCATCGGCACCGGAGAAT 60.203 61.111 9.46 0.00 40.72 2.40
288 289 0.590195 GAGGATGTCATTGCATCGGC 59.410 55.000 12.04 0.00 44.47 5.54
289 290 0.863799 CGAGGATGTCATTGCATCGG 59.136 55.000 12.04 4.34 44.47 4.18
290 291 0.863799 CCGAGGATGTCATTGCATCG 59.136 55.000 12.04 2.56 44.47 3.84
291 292 2.141517 CTCCGAGGATGTCATTGCATC 58.858 52.381 10.68 10.68 43.22 3.91
292 293 1.764723 TCTCCGAGGATGTCATTGCAT 59.235 47.619 0.00 0.00 0.00 3.96
293 294 1.194218 TCTCCGAGGATGTCATTGCA 58.806 50.000 0.00 0.00 0.00 4.08
294 295 2.141517 CATCTCCGAGGATGTCATTGC 58.858 52.381 8.68 0.00 38.49 3.56
295 296 2.141517 GCATCTCCGAGGATGTCATTG 58.858 52.381 15.31 0.00 43.41 2.82
296 297 1.071385 GGCATCTCCGAGGATGTCATT 59.929 52.381 14.21 0.00 44.77 2.57
297 298 0.683973 GGCATCTCCGAGGATGTCAT 59.316 55.000 14.21 0.00 44.77 3.06
298 299 2.127839 GGCATCTCCGAGGATGTCA 58.872 57.895 14.21 0.00 44.77 3.58
299 300 0.033228 CTGGCATCTCCGAGGATGTC 59.967 60.000 12.84 12.84 45.39 3.06
300 301 1.406065 CCTGGCATCTCCGAGGATGT 61.406 60.000 15.31 0.00 43.41 3.06
301 302 1.370437 CCTGGCATCTCCGAGGATG 59.630 63.158 11.45 11.45 44.08 3.51
302 303 0.692419 AACCTGGCATCTCCGAGGAT 60.692 55.000 0.00 0.00 36.92 3.24
303 304 0.909610 AAACCTGGCATCTCCGAGGA 60.910 55.000 0.00 0.00 36.92 3.71
304 305 0.745845 CAAACCTGGCATCTCCGAGG 60.746 60.000 0.00 0.00 38.39 4.63
305 306 0.250234 TCAAACCTGGCATCTCCGAG 59.750 55.000 0.00 0.00 37.80 4.63
306 307 0.690192 TTCAAACCTGGCATCTCCGA 59.310 50.000 0.00 0.00 37.80 4.55
307 308 1.755179 ATTCAAACCTGGCATCTCCG 58.245 50.000 0.00 0.00 37.80 4.63
308 309 3.378427 GTGTATTCAAACCTGGCATCTCC 59.622 47.826 0.00 0.00 0.00 3.71
309 310 4.265073 AGTGTATTCAAACCTGGCATCTC 58.735 43.478 0.00 0.00 0.00 2.75
310 311 4.307032 AGTGTATTCAAACCTGGCATCT 57.693 40.909 0.00 0.00 0.00 2.90
311 312 4.458989 TCAAGTGTATTCAAACCTGGCATC 59.541 41.667 0.00 0.00 0.00 3.91
312 313 4.406456 TCAAGTGTATTCAAACCTGGCAT 58.594 39.130 0.00 0.00 0.00 4.40
313 314 3.826524 TCAAGTGTATTCAAACCTGGCA 58.173 40.909 0.00 0.00 0.00 4.92
314 315 4.737054 CATCAAGTGTATTCAAACCTGGC 58.263 43.478 0.00 0.00 0.00 4.85
315 316 4.218200 TGCATCAAGTGTATTCAAACCTGG 59.782 41.667 0.00 0.00 0.00 4.45
316 317 5.181811 TCTGCATCAAGTGTATTCAAACCTG 59.818 40.000 0.00 0.00 0.00 4.00
317 318 5.316167 TCTGCATCAAGTGTATTCAAACCT 58.684 37.500 0.00 0.00 0.00 3.50
318 319 5.627499 TCTGCATCAAGTGTATTCAAACC 57.373 39.130 0.00 0.00 0.00 3.27
319 320 6.744537 GTCATCTGCATCAAGTGTATTCAAAC 59.255 38.462 0.00 0.00 0.00 2.93
320 321 6.656270 AGTCATCTGCATCAAGTGTATTCAAA 59.344 34.615 0.00 0.00 0.00 2.69
321 322 6.175471 AGTCATCTGCATCAAGTGTATTCAA 58.825 36.000 0.00 0.00 0.00 2.69
322 323 5.737860 AGTCATCTGCATCAAGTGTATTCA 58.262 37.500 0.00 0.00 0.00 2.57
323 324 6.484540 CAAGTCATCTGCATCAAGTGTATTC 58.515 40.000 0.00 0.00 0.00 1.75
324 325 5.163683 GCAAGTCATCTGCATCAAGTGTATT 60.164 40.000 0.00 0.00 0.00 1.89
325 326 4.334759 GCAAGTCATCTGCATCAAGTGTAT 59.665 41.667 0.00 0.00 0.00 2.29
326 327 3.686241 GCAAGTCATCTGCATCAAGTGTA 59.314 43.478 0.00 0.00 0.00 2.90
327 328 2.486982 GCAAGTCATCTGCATCAAGTGT 59.513 45.455 0.00 0.00 0.00 3.55
328 329 2.486592 TGCAAGTCATCTGCATCAAGTG 59.513 45.455 0.00 0.00 33.24 3.16
329 330 2.786777 TGCAAGTCATCTGCATCAAGT 58.213 42.857 0.00 0.00 33.24 3.16
330 331 5.452777 CATATGCAAGTCATCTGCATCAAG 58.547 41.667 13.18 2.45 44.87 3.02
331 332 5.432885 CATATGCAAGTCATCTGCATCAA 57.567 39.130 13.18 0.00 44.87 2.57
347 348 8.623030 ACAAAAATCCCATTTAAATGCATATGC 58.377 29.630 21.09 21.09 42.50 3.14
350 351 8.877779 CGAACAAAAATCCCATTTAAATGCATA 58.122 29.630 20.67 9.57 35.08 3.14
351 352 7.148272 CCGAACAAAAATCCCATTTAAATGCAT 60.148 33.333 20.67 12.41 35.08 3.96
352 353 6.148480 CCGAACAAAAATCCCATTTAAATGCA 59.852 34.615 20.67 10.79 35.08 3.96
353 354 6.370166 TCCGAACAAAAATCCCATTTAAATGC 59.630 34.615 20.67 3.87 35.08 3.56
354 355 7.897575 TCCGAACAAAAATCCCATTTAAATG 57.102 32.000 19.40 19.40 36.17 2.32
355 356 8.910351 TTTCCGAACAAAAATCCCATTTAAAT 57.090 26.923 0.00 0.00 0.00 1.40
356 357 8.732746 TTTTCCGAACAAAAATCCCATTTAAA 57.267 26.923 0.00 0.00 0.00 1.52
357 358 8.910351 ATTTTCCGAACAAAAATCCCATTTAA 57.090 26.923 0.00 0.00 32.27 1.52
358 359 9.425577 GTATTTTCCGAACAAAAATCCCATTTA 57.574 29.630 0.00 0.00 37.47 1.40
359 360 7.117092 CGTATTTTCCGAACAAAAATCCCATTT 59.883 33.333 0.00 0.00 37.47 2.32
360 361 6.588373 CGTATTTTCCGAACAAAAATCCCATT 59.412 34.615 0.00 0.00 37.47 3.16
361 362 6.096695 CGTATTTTCCGAACAAAAATCCCAT 58.903 36.000 0.00 0.00 37.47 4.00
362 363 5.009811 ACGTATTTTCCGAACAAAAATCCCA 59.990 36.000 0.00 0.00 37.47 4.37
363 364 5.343860 CACGTATTTTCCGAACAAAAATCCC 59.656 40.000 0.00 0.00 37.47 3.85
364 365 5.916320 ACACGTATTTTCCGAACAAAAATCC 59.084 36.000 0.00 0.00 37.47 3.01
365 366 6.979701 ACACGTATTTTCCGAACAAAAATC 57.020 33.333 0.00 0.00 37.47 2.17
366 367 8.853469 TTTACACGTATTTTCCGAACAAAAAT 57.147 26.923 0.00 0.00 39.15 1.82
367 368 8.744011 CATTTACACGTATTTTCCGAACAAAAA 58.256 29.630 0.00 0.00 0.00 1.94
368 369 7.378995 CCATTTACACGTATTTTCCGAACAAAA 59.621 33.333 0.00 0.00 0.00 2.44
369 370 6.856938 CCATTTACACGTATTTTCCGAACAAA 59.143 34.615 0.00 0.00 0.00 2.83
370 371 6.204301 TCCATTTACACGTATTTTCCGAACAA 59.796 34.615 0.00 0.00 0.00 2.83
371 372 5.699915 TCCATTTACACGTATTTTCCGAACA 59.300 36.000 0.00 0.00 0.00 3.18
372 373 6.168164 TCCATTTACACGTATTTTCCGAAC 57.832 37.500 0.00 0.00 0.00 3.95
373 374 6.594547 TGATCCATTTACACGTATTTTCCGAA 59.405 34.615 0.00 0.00 0.00 4.30
374 375 6.036300 GTGATCCATTTACACGTATTTTCCGA 59.964 38.462 0.00 0.00 0.00 4.55
375 376 6.036735 AGTGATCCATTTACACGTATTTTCCG 59.963 38.462 0.00 0.00 39.19 4.30
376 377 7.316544 AGTGATCCATTTACACGTATTTTCC 57.683 36.000 0.00 0.00 39.19 3.13
392 393 9.268282 GGAGGGAGTATATATTTAAGTGATCCA 57.732 37.037 0.00 0.00 0.00 3.41
393 394 9.268282 TGGAGGGAGTATATATTTAAGTGATCC 57.732 37.037 0.00 0.00 0.00 3.36
395 396 9.845214 ACTGGAGGGAGTATATATTTAAGTGAT 57.155 33.333 0.00 0.00 0.00 3.06
396 397 9.310449 GACTGGAGGGAGTATATATTTAAGTGA 57.690 37.037 0.00 0.00 0.00 3.41
397 398 8.532819 GGACTGGAGGGAGTATATATTTAAGTG 58.467 40.741 0.00 0.00 0.00 3.16
398 399 8.465971 AGGACTGGAGGGAGTATATATTTAAGT 58.534 37.037 0.00 0.00 0.00 2.24
399 400 8.903059 AGGACTGGAGGGAGTATATATTTAAG 57.097 38.462 0.00 0.00 0.00 1.85
400 401 9.684702 AAAGGACTGGAGGGAGTATATATTTAA 57.315 33.333 0.00 0.00 0.00 1.52
401 402 9.684702 AAAAGGACTGGAGGGAGTATATATTTA 57.315 33.333 0.00 0.00 0.00 1.40
402 403 8.582891 AAAAGGACTGGAGGGAGTATATATTT 57.417 34.615 0.00 0.00 0.00 1.40
403 404 8.582891 AAAAAGGACTGGAGGGAGTATATATT 57.417 34.615 0.00 0.00 0.00 1.28
404 405 9.327731 CTAAAAAGGACTGGAGGGAGTATATAT 57.672 37.037 0.00 0.00 0.00 0.86
405 406 8.294690 ACTAAAAAGGACTGGAGGGAGTATATA 58.705 37.037 0.00 0.00 0.00 0.86
406 407 7.140304 ACTAAAAAGGACTGGAGGGAGTATAT 58.860 38.462 0.00 0.00 0.00 0.86
407 408 6.509386 ACTAAAAAGGACTGGAGGGAGTATA 58.491 40.000 0.00 0.00 0.00 1.47
408 409 5.351405 ACTAAAAAGGACTGGAGGGAGTAT 58.649 41.667 0.00 0.00 0.00 2.12
409 410 4.759953 ACTAAAAAGGACTGGAGGGAGTA 58.240 43.478 0.00 0.00 0.00 2.59
410 411 3.599348 ACTAAAAAGGACTGGAGGGAGT 58.401 45.455 0.00 0.00 0.00 3.85
411 412 4.642466 AACTAAAAAGGACTGGAGGGAG 57.358 45.455 0.00 0.00 0.00 4.30
412 413 4.725490 CAAACTAAAAAGGACTGGAGGGA 58.275 43.478 0.00 0.00 0.00 4.20
413 414 3.255888 GCAAACTAAAAAGGACTGGAGGG 59.744 47.826 0.00 0.00 0.00 4.30
414 415 3.888930 TGCAAACTAAAAAGGACTGGAGG 59.111 43.478 0.00 0.00 0.00 4.30
415 416 5.712152 ATGCAAACTAAAAAGGACTGGAG 57.288 39.130 0.00 0.00 0.00 3.86
416 417 7.775053 AATATGCAAACTAAAAAGGACTGGA 57.225 32.000 0.00 0.00 0.00 3.86
417 418 8.956426 TCTAATATGCAAACTAAAAAGGACTGG 58.044 33.333 0.00 0.00 0.00 4.00
429 430 9.236006 ACTTCAGACAAATCTAATATGCAAACT 57.764 29.630 0.00 0.00 32.25 2.66
430 431 9.495754 GACTTCAGACAAATCTAATATGCAAAC 57.504 33.333 0.00 0.00 32.25 2.93
431 432 9.230122 TGACTTCAGACAAATCTAATATGCAAA 57.770 29.630 0.00 0.00 32.25 3.68
432 433 8.791327 TGACTTCAGACAAATCTAATATGCAA 57.209 30.769 0.00 0.00 32.25 4.08
433 434 8.791327 TTGACTTCAGACAAATCTAATATGCA 57.209 30.769 0.00 0.00 32.25 3.96
434 435 7.854916 GCTTGACTTCAGACAAATCTAATATGC 59.145 37.037 0.00 0.00 32.25 3.14
435 436 8.341173 GGCTTGACTTCAGACAAATCTAATATG 58.659 37.037 0.00 0.00 32.25 1.78
436 437 8.270744 AGGCTTGACTTCAGACAAATCTAATAT 58.729 33.333 0.00 0.00 32.25 1.28
437 438 7.624549 AGGCTTGACTTCAGACAAATCTAATA 58.375 34.615 0.00 0.00 32.25 0.98
438 439 6.479884 AGGCTTGACTTCAGACAAATCTAAT 58.520 36.000 0.00 0.00 32.25 1.73
439 440 5.869579 AGGCTTGACTTCAGACAAATCTAA 58.130 37.500 0.00 0.00 32.25 2.10
440 441 5.012046 TGAGGCTTGACTTCAGACAAATCTA 59.988 40.000 0.00 0.00 32.25 1.98
441 442 4.202398 TGAGGCTTGACTTCAGACAAATCT 60.202 41.667 0.00 0.00 34.57 2.40
442 443 4.067896 TGAGGCTTGACTTCAGACAAATC 58.932 43.478 0.00 0.00 30.22 2.17
443 444 4.090761 TGAGGCTTGACTTCAGACAAAT 57.909 40.909 0.00 0.00 30.22 2.32
444 445 3.558931 TGAGGCTTGACTTCAGACAAA 57.441 42.857 0.00 0.00 30.22 2.83
445 446 3.777106 ATGAGGCTTGACTTCAGACAA 57.223 42.857 0.00 0.00 0.00 3.18
446 447 4.890158 TTATGAGGCTTGACTTCAGACA 57.110 40.909 0.00 0.00 0.00 3.41
447 448 5.241662 ACTTTATGAGGCTTGACTTCAGAC 58.758 41.667 0.00 0.00 0.00 3.51
448 449 5.489792 ACTTTATGAGGCTTGACTTCAGA 57.510 39.130 0.00 0.00 0.00 3.27
449 450 6.205464 TCAAACTTTATGAGGCTTGACTTCAG 59.795 38.462 0.00 0.00 30.70 3.02
450 451 6.017109 GTCAAACTTTATGAGGCTTGACTTCA 60.017 38.462 8.16 0.00 42.80 3.02
451 452 6.374578 GTCAAACTTTATGAGGCTTGACTTC 58.625 40.000 8.16 0.00 42.80 3.01
452 453 5.241728 GGTCAAACTTTATGAGGCTTGACTT 59.758 40.000 13.22 0.00 44.08 3.01
453 454 4.762251 GGTCAAACTTTATGAGGCTTGACT 59.238 41.667 13.22 0.00 44.08 3.41
454 455 4.518970 TGGTCAAACTTTATGAGGCTTGAC 59.481 41.667 7.18 7.18 44.00 3.18
455 456 4.724399 TGGTCAAACTTTATGAGGCTTGA 58.276 39.130 0.00 0.00 32.24 3.02
456 457 5.222631 GTTGGTCAAACTTTATGAGGCTTG 58.777 41.667 0.00 0.00 35.75 4.01
457 458 5.453567 GTTGGTCAAACTTTATGAGGCTT 57.546 39.130 0.00 0.00 35.75 4.35
508 509 9.307121 GCGCATCTACTAGTATTGATTTCATAT 57.693 33.333 0.30 0.00 0.00 1.78
509 510 7.759886 GGCGCATCTACTAGTATTGATTTCATA 59.240 37.037 10.83 0.00 0.00 2.15
510 511 6.591834 GGCGCATCTACTAGTATTGATTTCAT 59.408 38.462 10.83 0.00 0.00 2.57
511 512 5.926542 GGCGCATCTACTAGTATTGATTTCA 59.073 40.000 10.83 0.00 0.00 2.69
512 513 5.926542 TGGCGCATCTACTAGTATTGATTTC 59.073 40.000 10.83 4.93 0.00 2.17
513 514 5.853936 TGGCGCATCTACTAGTATTGATTT 58.146 37.500 10.83 0.00 0.00 2.17
514 515 5.468540 TGGCGCATCTACTAGTATTGATT 57.531 39.130 10.83 0.00 0.00 2.57
515 516 5.185828 TCATGGCGCATCTACTAGTATTGAT 59.814 40.000 10.83 7.69 0.00 2.57
516 517 4.522789 TCATGGCGCATCTACTAGTATTGA 59.477 41.667 10.83 5.90 0.00 2.57
517 518 4.623167 GTCATGGCGCATCTACTAGTATTG 59.377 45.833 10.83 5.91 0.00 1.90
518 519 4.524714 AGTCATGGCGCATCTACTAGTATT 59.475 41.667 10.83 0.00 0.00 1.89
519 520 4.082845 AGTCATGGCGCATCTACTAGTAT 58.917 43.478 10.83 0.00 0.00 2.12
520 521 3.487372 AGTCATGGCGCATCTACTAGTA 58.513 45.455 10.83 1.89 0.00 1.82
521 522 2.311463 AGTCATGGCGCATCTACTAGT 58.689 47.619 10.83 0.00 0.00 2.57
522 523 3.377346 AAGTCATGGCGCATCTACTAG 57.623 47.619 10.83 0.00 0.00 2.57
523 524 4.929819 TTAAGTCATGGCGCATCTACTA 57.070 40.909 10.83 0.00 0.00 1.82
524 525 3.819564 TTAAGTCATGGCGCATCTACT 57.180 42.857 10.83 4.11 0.00 2.57
525 526 3.871594 ACTTTAAGTCATGGCGCATCTAC 59.128 43.478 10.83 1.38 0.00 2.59
526 527 4.137116 ACTTTAAGTCATGGCGCATCTA 57.863 40.909 10.83 0.00 0.00 1.98
527 528 2.991250 ACTTTAAGTCATGGCGCATCT 58.009 42.857 10.83 0.00 0.00 2.90
528 529 3.764885 AACTTTAAGTCATGGCGCATC 57.235 42.857 10.83 0.00 0.00 3.91
529 530 3.505680 TGAAACTTTAAGTCATGGCGCAT 59.494 39.130 10.83 0.00 0.00 4.73
530 531 2.881513 TGAAACTTTAAGTCATGGCGCA 59.118 40.909 10.83 0.00 0.00 6.09
531 532 3.552604 TGAAACTTTAAGTCATGGCGC 57.447 42.857 0.00 0.00 0.00 6.53
633 634 9.781834 CGGTCATTTTTACTCTGCATATAAAAA 57.218 29.630 17.78 17.78 40.29 1.94
634 635 8.402472 CCGGTCATTTTTACTCTGCATATAAAA 58.598 33.333 0.00 0.00 0.00 1.52
635 636 7.771361 TCCGGTCATTTTTACTCTGCATATAAA 59.229 33.333 0.00 0.00 0.00 1.40
636 637 7.276658 TCCGGTCATTTTTACTCTGCATATAA 58.723 34.615 0.00 0.00 0.00 0.98
637 638 6.822442 TCCGGTCATTTTTACTCTGCATATA 58.178 36.000 0.00 0.00 0.00 0.86
638 639 5.680619 TCCGGTCATTTTTACTCTGCATAT 58.319 37.500 0.00 0.00 0.00 1.78
639 640 5.092554 TCCGGTCATTTTTACTCTGCATA 57.907 39.130 0.00 0.00 0.00 3.14
640 641 3.941483 CTCCGGTCATTTTTACTCTGCAT 59.059 43.478 0.00 0.00 0.00 3.96
641 642 3.334691 CTCCGGTCATTTTTACTCTGCA 58.665 45.455 0.00 0.00 0.00 4.41
642 643 2.678336 CCTCCGGTCATTTTTACTCTGC 59.322 50.000 0.00 0.00 0.00 4.26
643 644 3.055385 TCCCTCCGGTCATTTTTACTCTG 60.055 47.826 0.00 0.00 0.00 3.35
644 645 3.178865 TCCCTCCGGTCATTTTTACTCT 58.821 45.455 0.00 0.00 0.00 3.24
645 646 3.055312 ACTCCCTCCGGTCATTTTTACTC 60.055 47.826 0.00 0.00 0.00 2.59
646 647 2.910977 ACTCCCTCCGGTCATTTTTACT 59.089 45.455 0.00 0.00 0.00 2.24
647 648 3.345508 ACTCCCTCCGGTCATTTTTAC 57.654 47.619 0.00 0.00 0.00 2.01
648 649 3.198417 GGTACTCCCTCCGGTCATTTTTA 59.802 47.826 0.00 0.00 0.00 1.52
649 650 2.026542 GGTACTCCCTCCGGTCATTTTT 60.027 50.000 0.00 0.00 0.00 1.94
650 651 1.558294 GGTACTCCCTCCGGTCATTTT 59.442 52.381 0.00 0.00 0.00 1.82
651 652 1.201424 GGTACTCCCTCCGGTCATTT 58.799 55.000 0.00 0.00 0.00 2.32
652 653 0.042131 TGGTACTCCCTCCGGTCATT 59.958 55.000 0.00 0.00 0.00 2.57
653 654 0.264955 ATGGTACTCCCTCCGGTCAT 59.735 55.000 0.00 0.00 0.00 3.06
654 655 0.928505 TATGGTACTCCCTCCGGTCA 59.071 55.000 0.00 0.00 0.00 4.02
655 656 2.305858 ATATGGTACTCCCTCCGGTC 57.694 55.000 0.00 0.00 0.00 4.79
656 657 4.079327 CCTATATATGGTACTCCCTCCGGT 60.079 50.000 0.00 0.00 0.00 5.28
657 658 4.471548 CCTATATATGGTACTCCCTCCGG 58.528 52.174 0.00 0.00 0.00 5.14
658 659 4.079327 ACCCTATATATGGTACTCCCTCCG 60.079 50.000 7.85 0.00 31.61 4.63
659 660 5.209659 CACCCTATATATGGTACTCCCTCC 58.790 50.000 9.15 0.00 32.32 4.30
660 661 5.209659 CCACCCTATATATGGTACTCCCTC 58.790 50.000 9.15 0.00 32.32 4.30
661 662 4.015541 CCCACCCTATATATGGTACTCCCT 60.016 50.000 9.15 0.00 32.32 4.20
662 663 4.015918 TCCCACCCTATATATGGTACTCCC 60.016 50.000 9.15 0.00 32.32 4.30
663 664 4.961099 GTCCCACCCTATATATGGTACTCC 59.039 50.000 9.15 0.00 32.32 3.85
664 665 4.643784 CGTCCCACCCTATATATGGTACTC 59.356 50.000 9.15 1.71 32.32 2.59
665 666 4.045079 ACGTCCCACCCTATATATGGTACT 59.955 45.833 9.15 0.00 32.32 2.73
666 667 4.159135 CACGTCCCACCCTATATATGGTAC 59.841 50.000 9.15 4.45 32.32 3.34
667 668 4.044444 TCACGTCCCACCCTATATATGGTA 59.956 45.833 9.15 0.00 32.32 3.25
668 669 3.170717 CACGTCCCACCCTATATATGGT 58.829 50.000 3.99 3.99 34.40 3.55
669 670 3.437213 TCACGTCCCACCCTATATATGG 58.563 50.000 2.71 2.71 0.00 2.74
670 671 4.341487 TCTCACGTCCCACCCTATATATG 58.659 47.826 0.00 0.00 0.00 1.78
680 681 2.011540 GGAAGATTCTCACGTCCCAC 57.988 55.000 0.00 0.00 31.59 4.61
785 788 0.393808 GCCTAGTTTGATTGGCCGGA 60.394 55.000 5.05 0.00 39.49 5.14
788 791 1.106285 CCTGCCTAGTTTGATTGGCC 58.894 55.000 0.00 0.00 44.32 5.36
797 800 1.000163 CATATCGCGACCTGCCTAGTT 60.000 52.381 12.93 0.00 42.08 2.24
801 804 1.364171 GACATATCGCGACCTGCCT 59.636 57.895 12.93 0.00 42.08 4.75
878 881 3.992943 TGAGGATTACCGTGTGGAAAT 57.007 42.857 0.00 0.00 41.83 2.17
999 1002 2.916502 TACCTGCCGCTAACGCCATG 62.917 60.000 0.00 0.00 38.22 3.66
1371 1374 3.665675 AATGACGCCTGCGAGGGAC 62.666 63.158 19.52 4.80 42.83 4.46
1380 1383 3.717294 AGCCCCGAAATGACGCCT 61.717 61.111 0.00 0.00 0.00 5.52
1422 1425 4.214383 CGGATGCAGTTGAGCGCG 62.214 66.667 0.00 0.00 37.31 6.86
1454 1457 1.077501 ATCACCATGCCGGACTTGG 60.078 57.895 21.32 21.32 46.67 3.61
2113 2122 1.349542 TAACCCATGGTGCCGGCTAT 61.350 55.000 29.70 16.40 35.34 2.97
2589 2649 1.956629 ATACTTGACCCGCTGACCCG 61.957 60.000 0.00 0.00 0.00 5.28
2720 4694 8.786826 AATTGTTTAGATACCTCGTTTGATCA 57.213 30.769 0.00 0.00 0.00 2.92
2803 4801 4.026356 AGCTCAGAAAAGTGCTTACCAT 57.974 40.909 0.00 0.00 34.99 3.55
2860 4858 2.422519 CCAGACCATGCATAGGAAGCTT 60.423 50.000 18.41 0.00 0.00 3.74
2867 4869 3.873361 CACTAACACCAGACCATGCATAG 59.127 47.826 0.00 0.00 0.00 2.23
2884 4893 6.154706 GTCTATTTTCTCCAGTCCTCCACTAA 59.845 42.308 0.00 0.00 32.21 2.24
2983 5019 3.911365 CGAACACAAATAATTCGCAGCAA 59.089 39.130 0.00 0.00 38.82 3.91
3064 5106 9.219603 GCATATATAATTGCACCAGTTTCTCTA 57.780 33.333 3.87 0.00 38.72 2.43
3110 5152 0.179056 CTAATGACCGTCGCCCCATT 60.179 55.000 9.01 9.01 34.16 3.16
3135 5177 0.935366 CTATTCTTCCCGTCGCTCGC 60.935 60.000 0.00 0.00 38.35 5.03
3249 5291 8.137437 TCTTATATACGAACTAAAAAGGACCGG 58.863 37.037 0.00 0.00 0.00 5.28
3334 5379 9.424319 GAGTCGCCTCTTTGATTTCATATTATA 57.576 33.333 0.00 0.00 34.69 0.98
3336 5381 6.420903 CGAGTCGCCTCTTTGATTTCATATTA 59.579 38.462 0.00 0.00 35.43 0.98
3394 5439 0.767998 GGATTAGCTGGAGAAGGGGG 59.232 60.000 0.00 0.00 0.00 5.40
3395 5440 0.767998 GGGATTAGCTGGAGAAGGGG 59.232 60.000 0.00 0.00 0.00 4.79
3396 5441 0.767998 GGGGATTAGCTGGAGAAGGG 59.232 60.000 0.00 0.00 0.00 3.95
3397 5442 1.696884 GAGGGGATTAGCTGGAGAAGG 59.303 57.143 0.00 0.00 0.00 3.46
3398 5443 1.342819 CGAGGGGATTAGCTGGAGAAG 59.657 57.143 0.00 0.00 0.00 2.85
3399 5444 1.414158 CGAGGGGATTAGCTGGAGAA 58.586 55.000 0.00 0.00 0.00 2.87
3400 5445 1.115930 GCGAGGGGATTAGCTGGAGA 61.116 60.000 0.00 0.00 0.00 3.71
3401 5446 1.369321 GCGAGGGGATTAGCTGGAG 59.631 63.158 0.00 0.00 0.00 3.86
3402 5447 2.140792 GGCGAGGGGATTAGCTGGA 61.141 63.158 0.00 0.00 0.00 3.86
3403 5448 2.427753 GGCGAGGGGATTAGCTGG 59.572 66.667 0.00 0.00 0.00 4.85
3404 5449 2.029666 CGGCGAGGGGATTAGCTG 59.970 66.667 0.00 0.00 0.00 4.24
3405 5450 3.930012 GCGGCGAGGGGATTAGCT 61.930 66.667 12.98 0.00 0.00 3.32
3406 5451 4.990553 GGCGGCGAGGGGATTAGC 62.991 72.222 12.98 0.00 0.00 3.09
3407 5452 4.664677 CGGCGGCGAGGGGATTAG 62.665 72.222 29.19 0.00 0.00 1.73
3428 5473 3.901797 CTCACCCGGTTGTGGCCTC 62.902 68.421 3.32 0.00 36.87 4.70
3429 5474 3.953775 CTCACCCGGTTGTGGCCT 61.954 66.667 3.32 0.00 36.87 5.19
3432 5477 3.246112 TCCCTCACCCGGTTGTGG 61.246 66.667 12.81 12.81 36.87 4.17
3433 5478 2.347490 CTCCCTCACCCGGTTGTG 59.653 66.667 0.00 1.98 37.59 3.33
3434 5479 2.122547 ACTCCCTCACCCGGTTGT 60.123 61.111 0.00 0.00 0.00 3.32
3435 5480 2.663196 GACTCCCTCACCCGGTTG 59.337 66.667 0.00 0.00 0.00 3.77
3436 5481 2.606826 GGACTCCCTCACCCGGTT 60.607 66.667 0.00 0.00 0.00 4.44
3437 5482 3.602030 AGGACTCCCTCACCCGGT 61.602 66.667 0.00 0.00 38.86 5.28
3438 5483 3.077556 CAGGACTCCCTCACCCGG 61.078 72.222 0.00 0.00 42.02 5.73
3439 5484 0.978146 ATTCAGGACTCCCTCACCCG 60.978 60.000 0.00 0.00 42.02 5.28
3440 5485 1.290134 AATTCAGGACTCCCTCACCC 58.710 55.000 0.00 0.00 42.02 4.61
3441 5486 3.828875 CTAATTCAGGACTCCCTCACC 57.171 52.381 0.00 0.00 42.02 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.