AutoCloner

Multiple sequence alignment - TraesCS7A01G215400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G215400	chr7A	100.000	3027	0	0	1	3027	181049560	181052586	0.000000e+00	5590
1	TraesCS7A01G215400	chr7A	93.494	2444	154	5	1	2442	181013998	181016438	0.000000e+00	3627
2	TraesCS7A01G215400	chr7A	93.012	2447	150	15	1	2442	180842947	180845377	0.000000e+00	3552
3	TraesCS7A01G215400	chr7A	92.568	2449	173	5	1	2442	181168071	181170517	0.000000e+00	3506
4	TraesCS7A01G215400	chr7A	92.267	2444	183	6	1	2442	180983976	180986415	0.000000e+00	3461
5	TraesCS7A01G215400	chr7A	91.453	585	44	3	2445	3027	488269037	488268457	0.000000e+00	798
6	TraesCS7A01G215400	chr3D	89.050	2274	225	18	1	2269	77998340	78000594	0.000000e+00	2798
7	TraesCS7A01G215400	chr3D	89.045	2273	227	16	1	2269	78096033	78098287	0.000000e+00	2798
8	TraesCS7A01G215400	chr3D	91.993	587	40	6	2444	3027	158068174	158067592	0.000000e+00	817
9	TraesCS7A01G215400	chr3D	91.993	587	40	6	2444	3027	158071818	158071236	0.000000e+00	817
10	TraesCS7A01G215400	chr3D	95.028	181	9	0	2262	2442	78001129	78001309	4.940000e-73	285
11	TraesCS7A01G215400	chr3D	93.370	181	12	0	2262	2442	78098824	78099004	4.970000e-68	268
12	TraesCS7A01G215400	chr3B	87.236	2272	238	26	1	2269	124121316	124119094	0.000000e+00	2542
13	TraesCS7A01G215400	chr3B	93.514	185	12	0	2261	2445	124118561	124118377	2.970000e-70	276
14	TraesCS7A01G215400	chr7D	94.573	1603	75	3	841	2442	177169045	177170636	0.000000e+00	2468
15	TraesCS7A01G215400	chr7D	91.610	584	45	4	2446	3027	453380846	453380265	0.000000e+00	804
16	TraesCS7A01G215400	chr7D	91.453	585	43	5	2445	3027	360310541	360309962	0.000000e+00	797
17	TraesCS7A01G215400	chr3A	92.542	1314	95	3	957	2269	91285685	91284374	0.000000e+00	1881
18	TraesCS7A01G215400	chr3A	92.069	580	46	0	2445	3024	623171655	623172234	0.000000e+00	817
19	TraesCS7A01G215400	chr3A	81.658	965	142	13	1	961	91289082	91288149	0.000000e+00	769
20	TraesCS7A01G215400	chr3A	94.054	185	11	0	2261	2445	91283863	91283679	6.390000e-72	281
21	TraesCS7A01G215400	chr4B	90.091	1322	117	5	948	2269	476571577	476570270	0.000000e+00	1703
22	TraesCS7A01G215400	chr4A	92.746	579	38	1	2446	3024	479450458	479451032	0.000000e+00	833
23	TraesCS7A01G215400	chr4A	92.096	582	44	1	2446	3027	501059525	501058946	0.000000e+00	819
24	TraesCS7A01G215400	chr4A	77.457	936	168	31	1	915	69512631	69511718	1.240000e-143	520
25	TraesCS7A01G215400	chr6D	91.424	583	46	4	2444	3024	29708852	29709432	0.000000e+00	797

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G215400	chr7A	181049560	181052586	3026	False	5590.0	5590	100.0000	1	3027	1	chr7A.!!$F4	3026
1	TraesCS7A01G215400	chr7A	181013998	181016438	2440	False	3627.0	3627	93.4940	1	2442	1	chr7A.!!$F3	2441
2	TraesCS7A01G215400	chr7A	180842947	180845377	2430	False	3552.0	3552	93.0120	1	2442	1	chr7A.!!$F1	2441
3	TraesCS7A01G215400	chr7A	181168071	181170517	2446	False	3506.0	3506	92.5680	1	2442	1	chr7A.!!$F5	2441
4	TraesCS7A01G215400	chr7A	180983976	180986415	2439	False	3461.0	3461	92.2670	1	2442	1	chr7A.!!$F2	2441
5	TraesCS7A01G215400	chr7A	488268457	488269037	580	True	798.0	798	91.4530	2445	3027	1	chr7A.!!$R1	582
6	TraesCS7A01G215400	chr3D	77998340	78001309	2969	False	1541.5	2798	92.0390	1	2442	2	chr3D.!!$F1	2441
7	TraesCS7A01G215400	chr3D	78096033	78099004	2971	False	1533.0	2798	91.2075	1	2442	2	chr3D.!!$F2	2441
8	TraesCS7A01G215400	chr3D	158067592	158071818	4226	True	817.0	817	91.9930	2444	3027	2	chr3D.!!$R1	583
9	TraesCS7A01G215400	chr3B	124118377	124121316	2939	True	1409.0	2542	90.3750	1	2445	2	chr3B.!!$R1	2444
10	TraesCS7A01G215400	chr7D	177169045	177170636	1591	False	2468.0	2468	94.5730	841	2442	1	chr7D.!!$F1	1601
11	TraesCS7A01G215400	chr7D	453380265	453380846	581	True	804.0	804	91.6100	2446	3027	1	chr7D.!!$R2	581
12	TraesCS7A01G215400	chr7D	360309962	360310541	579	True	797.0	797	91.4530	2445	3027	1	chr7D.!!$R1	582
13	TraesCS7A01G215400	chr3A	91283679	91289082	5403	True	977.0	1881	89.4180	1	2445	3	chr3A.!!$R1	2444
14	TraesCS7A01G215400	chr3A	623171655	623172234	579	False	817.0	817	92.0690	2445	3024	1	chr3A.!!$F1	579
15	TraesCS7A01G215400	chr4B	476570270	476571577	1307	True	1703.0	1703	90.0910	948	2269	1	chr4B.!!$R1	1321
16	TraesCS7A01G215400	chr4A	479450458	479451032	574	False	833.0	833	92.7460	2446	3024	1	chr4A.!!$F1	578
17	TraesCS7A01G215400	chr4A	501058946	501059525	579	True	819.0	819	92.0960	2446	3027	1	chr4A.!!$R2	581
18	TraesCS7A01G215400	chr4A	69511718	69512631	913	True	520.0	520	77.4570	1	915	1	chr4A.!!$R1	914
19	TraesCS7A01G215400	chr6D	29708852	29709432	580	False	797.0	797	91.4240	2444	3024	1	chr6D.!!$F1	580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
448	483	0.179092	CATGAGTGCGCAGGAGATCA	60.179	55.0	12.22	11.0	0.0	2.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2155	4674	0.533755	CCCAAAGCCGCTCATCCTAG	60.534	60.0	0.0	0.0	0.0	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	6.434652	TCACCTACAGAAGTTCTAAGGAAGAG	59.565	42.308	28.14	18.35	34.29	2.85
96	97	6.048073	TGTTTATATGAAGCGAACATCAGC	57.952	37.500	0.00	0.00	0.00	4.26
100	101	2.760634	TGAAGCGAACATCAGCCTTA	57.239	45.000	0.00	0.00	0.00	2.69
103	104	1.726853	AGCGAACATCAGCCTTACAC	58.273	50.000	0.00	0.00	0.00	2.90
111	112	0.243907	TCAGCCTTACACGAGACAGC	59.756	55.000	0.00	0.00	0.00	4.40
182	191	0.529337	CATGTTCGCTCGCTCATCCT	60.529	55.000	0.00	0.00	0.00	3.24
216	241	0.919780	GAAAACCCTAGCCCCCTCCT	60.920	60.000	0.00	0.00	0.00	3.69
217	242	0.424368	AAAACCCTAGCCCCCTCCTA	59.576	55.000	0.00	0.00	0.00	2.94
236	261	2.750141	AATACTCCTCTCCTACCGCA	57.250	50.000	0.00	0.00	0.00	5.69
307	333	1.456287	GCAGGTCTTTCCCCACACT	59.544	57.895	0.00	0.00	36.75	3.55
400	435	2.365105	CTCGGGTGCCTTAGGGGA	60.365	66.667	0.00	0.00	37.23	4.81
434	469	1.302033	GGCTACGGGATGGCATGAG	60.302	63.158	3.81	0.00	36.24	2.90
435	470	1.447643	GCTACGGGATGGCATGAGT	59.552	57.895	3.81	4.46	34.21	3.41
448	483	0.179092	CATGAGTGCGCAGGAGATCA	60.179	55.000	12.22	11.00	0.00	2.92
477	512	1.073397	CCCCCTAGGCCCAGATCTT	60.073	63.158	2.05	0.00	0.00	2.40
544	586	4.357279	GGCAGCAAGGCTCCCTGT	62.357	66.667	13.67	0.00	36.40	4.00
560	602	2.609610	GTAGGTGGAGGTGGGGCA	60.610	66.667	0.00	0.00	0.00	5.36
578	623	4.988716	ACGGTGGTCTCCTGGCGA	62.989	66.667	0.00	0.00	0.00	5.54
583	628	3.371063	GGTCTCCTGGCGACGACA	61.371	66.667	2.00	2.00	32.24	4.35
593	638	2.612567	GCGACGACATTGGCAACCA	61.613	57.895	0.00	0.00	0.00	3.67
611	656	4.806571	GCATGCTGCAACATGGAG	57.193	55.556	26.80	6.85	46.14	3.86
612	657	1.888018	GCATGCTGCAACATGGAGT	59.112	52.632	26.80	0.00	46.14	3.85
672	718	2.840753	GGGCCCAGTTTGTCCCAGA	61.841	63.158	19.95	0.00	38.62	3.86
796	842	3.839046	TAGGCCCCGTGTCAGTGGT	62.839	63.158	0.00	0.00	0.00	4.16
802	848	1.961277	CCGTGTCAGTGGTTCCAGC	60.961	63.158	0.00	0.00	0.00	4.85
838	885	3.751246	CAAGGCCATGGTGGTGCG	61.751	66.667	14.67	0.00	40.46	5.34
870	917	3.244561	ACGACATGATTGGTGGAGAACTT	60.245	43.478	0.00	0.00	0.00	2.66
921	969	4.266714	GTCGGGAGAAATCCATTTTGGTA	58.733	43.478	0.00	0.00	42.89	3.25
933	981	7.790782	ATCCATTTTGGTACCTTTTATGTGT	57.209	32.000	14.36	0.76	39.03	3.72
939	987	6.394025	TTGGTACCTTTTATGTGTGGTTTC	57.606	37.500	14.36	0.00	34.33	2.78
940	988	5.697067	TGGTACCTTTTATGTGTGGTTTCT	58.303	37.500	14.36	0.00	34.33	2.52
944	992	8.096414	GGTACCTTTTATGTGTGGTTTCTACTA	58.904	37.037	4.06	0.00	34.33	1.82
978	3495	7.611855	CCATTCTACATAGGGGAATAACATTCC	59.388	40.741	9.08	9.08	37.86	3.01
1042	3559	5.641636	CAGTACAATAGTGGTGTGCACAATA	59.358	40.000	23.59	10.86	34.42	1.90
1240	3757	2.052237	GGCGCGCCAATTATCACG	60.052	61.111	43.55	0.00	35.81	4.35
1322	3839	8.304596	TGTTTCTTACCTAGTGAAGATGTGTAG	58.695	37.037	4.81	0.00	31.91	2.74
1517	4035	3.640029	AGTTACATATGGGTCACCTACGG	59.360	47.826	7.80	0.00	37.76	4.02
1635	4154	2.368548	TCCCCTCATGAACATGGTATCG	59.631	50.000	13.67	0.90	39.24	2.92
1956	4475	2.035155	GGGCCCGCAAACTAACCT	59.965	61.111	5.69	0.00	0.00	3.50
2013	4532	8.556213	TTCCGCATGAACTATAGTTTTACTTT	57.444	30.769	18.96	0.00	38.56	2.66
2044	4563	2.525750	AGCAAATAACGCGACATGTG	57.474	45.000	15.93	11.76	0.00	3.21
2060	4579	3.940852	ACATGTGGCATGTGTATGTACAG	59.059	43.478	13.18	0.00	37.13	2.74
2066	4585	3.871594	GGCATGTGTATGTACAGGACTTC	59.128	47.826	0.33	1.55	37.40	3.01
2084	4603	8.879759	CAGGACTTCTTCGCTTGTTTATTTATA	58.120	33.333	0.00	0.00	0.00	0.98
2155	4674	1.890174	GGCAACAATGTAGGGGCAC	59.110	57.895	0.00	0.00	0.00	5.01
2217	4736	2.808543	GTCCAATGCTCGTCTTTGTCTT	59.191	45.455	0.00	0.00	0.00	3.01
2219	4738	3.498397	TCCAATGCTCGTCTTTGTCTTTC	59.502	43.478	0.00	0.00	0.00	2.62
2321	5924	1.202604	TCCAAGGACGGTGAGTTTGTC	60.203	52.381	0.00	0.00	0.00	3.18
2346	5949	7.986889	TCTAATACATTGCAATGCTCTTGTCTA	59.013	33.333	33.94	18.92	40.04	2.59
2353	5956	2.857152	CAATGCTCTTGTCTAGTCTCGC	59.143	50.000	0.00	0.00	0.00	5.03
2360	5963	3.129462	TCTTGTCTAGTCTCGCCATTGAG	59.871	47.826	0.00	0.00	37.33	3.02
2418	6021	8.494016	AAGTTCAAGTAGTTCCTATGCATAAC	57.506	34.615	8.00	5.30	0.00	1.89
2442	6045	2.170166	CCATGGTAAGTGCATGTGGTT	58.830	47.619	2.57	0.00	0.00	3.67
2500	6103	2.440147	CCTGTTGGACATGGGCCA	59.560	61.111	9.61	9.61	34.57	5.36
2547	6153	0.882474	CGAAGACTCTCTCCCGTGTT	59.118	55.000	0.00	0.00	0.00	3.32
2624	6230	3.644738	TCCTTTCTCTGTAACCGACCTTT	59.355	43.478	0.00	0.00	0.00	3.11
2644	6250	0.340908	TACAACCCTAGTCCCCTCCC	59.659	60.000	0.00	0.00	0.00	4.30
2659	6265	5.247792	GTCCCCTCCCGTGTCTATATAAATT	59.752	44.000	0.00	0.00	0.00	1.82
2664	6270	6.210784	CCTCCCGTGTCTATATAAATTGGAGA	59.789	42.308	0.00	0.00	38.30	3.71
2678	6284	5.615925	AATTGGAGAGCTTAGTCCGTATT	57.384	39.130	6.31	5.94	35.37	1.89
2814	6423	4.966805	CAGGAAGTAGGGTATTACCTCCAA	59.033	45.833	16.39	0.00	42.09	3.53
2850	6459	1.810151	CTGGGTAAACATTGTGTCCCG	59.190	52.381	14.95	9.09	37.88	5.14
2967	10220	1.227999	CCACTGTGCCGTCGTCAAAT	61.228	55.000	1.29	0.00	0.00	2.32
2968	10221	1.424403	CACTGTGCCGTCGTCAAATA	58.576	50.000	0.00	0.00	0.00	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
10	11	6.796648	AGTAGTCCTCTTCCTTAGAACTTCT	58.203	40.000	0.00	0.00	29.09	2.85
81	82	2.289382	TGTAAGGCTGATGTTCGCTTCA	60.289	45.455	0.00	0.00	0.00	3.02
96	97	1.805945	GCCGCTGTCTCGTGTAAGG	60.806	63.158	0.00	0.00	0.00	2.69
100	101	4.702081	GACGCCGCTGTCTCGTGT	62.702	66.667	7.75	0.00	36.50	4.49
111	112	1.226156	CTCTTGAGTCTCGACGCCG	60.226	63.158	0.00	0.00	36.20	6.46
198	207	0.424368	TAGGAGGGGGCTAGGGTTTT	59.576	55.000	0.00	0.00	0.00	2.43
216	241	3.870538	TGCGGTAGGAGAGGAGTATTA	57.129	47.619	0.00	0.00	0.00	0.98
217	242	2.750141	TGCGGTAGGAGAGGAGTATT	57.250	50.000	0.00	0.00	0.00	1.89
307	333	0.914644	CAGAAGGATCCCTGCCAAGA	59.085	55.000	8.55	0.00	32.13	3.02
434	469	2.894387	GGCTGATCTCCTGCGCAC	60.894	66.667	5.66	0.00	40.20	5.34
435	470	4.519437	CGGCTGATCTCCTGCGCA	62.519	66.667	10.98	10.98	40.20	6.09
437	472	1.664017	CATCGGCTGATCTCCTGCG	60.664	63.158	4.63	0.00	40.20	5.18
544	586	2.208640	TTGCCCCACCTCCACCTA	59.791	61.111	0.00	0.00	0.00	3.08
560	602	4.003788	CGCCAGGAGACCACCGTT	62.004	66.667	0.00	0.00	34.73	4.44
578	623	0.895100	ATGCTGGTTGCCAATGTCGT	60.895	50.000	0.00	0.00	42.00	4.34
583	628	1.594833	CAGCATGCTGGTTGCCAAT	59.405	52.632	35.39	0.90	41.06	3.16
611	656	2.507324	GGCTCGCGAAGTCCTCAC	60.507	66.667	11.33	0.00	0.00	3.51
639	685	4.798682	CCCCTACTGGCCCGACCT	62.799	72.222	0.00	0.00	40.22	3.85
660	706	1.675641	GCGGCATCTGGGACAAACT	60.676	57.895	0.00	0.00	38.70	2.66
697	743	2.283388	ACTACCTCCACCGCCGAA	60.283	61.111	0.00	0.00	0.00	4.30
721	767	1.785041	GCAACAACTCAGCCAAGCGA	61.785	55.000	0.00	0.00	0.00	4.93
756	802	7.472240	GCCTAGAGGAAGTAATTAAGAGGGAAG	60.472	44.444	0.00	0.00	37.39	3.46
796	842	1.078214	CCTCATCGCCAAGCTGGAA	60.078	57.895	6.40	0.00	40.96	3.53
802	848	2.358957	TGAATCAACCTCATCGCCAAG	58.641	47.619	0.00	0.00	0.00	3.61
838	885	2.586258	ATCATGTCGTCCACTAGCAC	57.414	50.000	0.00	0.00	0.00	4.40
870	917	0.689745	CCACCACCCCGGAGAATCTA	60.690	60.000	0.73	0.00	38.63	1.98
921	969	7.742767	AGTAGTAGAAACCACACATAAAAGGT	58.257	34.615	0.00	0.00	35.47	3.50
933	981	6.958192	AGAATGGAAGGTAGTAGTAGAAACCA	59.042	38.462	0.00	0.00	34.29	3.67
939	987	9.233649	CCTATGTAGAATGGAAGGTAGTAGTAG	57.766	40.741	0.00	0.00	0.00	2.57
940	988	8.168725	CCCTATGTAGAATGGAAGGTAGTAGTA	58.831	40.741	0.00	0.00	0.00	1.82
944	992	5.102783	TCCCCTATGTAGAATGGAAGGTAGT	60.103	44.000	0.00	0.00	0.00	2.73
978	3495	8.689061	TCCATGGAAATCTGTTATCATCAAAAG	58.311	33.333	13.46	0.00	0.00	2.27
1042	3559	4.276926	GCTTGTCATGAAGAGGTCAAACTT	59.723	41.667	0.00	0.00	40.50	2.66
1227	3744	0.304705	GCAGACCGTGATAATTGGCG	59.695	55.000	0.00	0.00	0.00	5.69
1240	3757	4.265073	AGGATTTGTTCACTATGCAGACC	58.735	43.478	0.00	0.00	0.00	3.85
1370	3887	6.985645	CCTTCTGAAGTTTCTCATCTGGATAG	59.014	42.308	15.72	0.00	0.00	2.08
1609	4127	3.788142	ACCATGTTCATGAGGGGAATACT	59.212	43.478	13.51	0.00	0.00	2.12
1680	4199	1.290009	GCATCTTGCCCTGCGTTTT	59.710	52.632	0.00	0.00	37.42	2.43
1684	4203	4.189188	GCTGCATCTTGCCCTGCG	62.189	66.667	0.00	0.00	44.23	5.18
1727	4246	6.575162	TCAGTTTTTAGCCTCTCATTTTCC	57.425	37.500	0.00	0.00	0.00	3.13
1950	4469	7.442666	GGCTAAGATCAAAGATGGTAAGGTTAG	59.557	40.741	0.00	0.00	0.00	2.34
1956	4475	7.118723	ACATTGGCTAAGATCAAAGATGGTAA	58.881	34.615	0.00	0.00	0.00	2.85
2013	4532	3.932710	CGTTATTTGCTAGCTGAGGAACA	59.067	43.478	17.23	0.00	34.83	3.18
2044	4563	3.543680	AGTCCTGTACATACACATGCC	57.456	47.619	0.00	0.00	35.39	4.40
2060	4579	9.865484	GATATAAATAAACAAGCGAAGAAGTCC	57.135	33.333	0.00	0.00	0.00	3.85
2084	4603	2.224719	GCAACCATGAGAGCCTATGGAT	60.225	50.000	10.00	0.00	45.32	3.41
2141	4660	2.263895	TCCTAGTGCCCCTACATTGT	57.736	50.000	0.00	0.00	0.00	2.71
2155	4674	0.533755	CCCAAAGCCGCTCATCCTAG	60.534	60.000	0.00	0.00	0.00	3.02
2219	4738	9.950680	ACTTGATATGTTTTGTTACAAACTCAG	57.049	29.630	10.28	3.56	0.00	3.35
2321	5924	7.024340	AGACAAGAGCATTGCAATGTATTAG	57.976	36.000	33.67	24.13	38.65	1.73
2346	5949	1.769026	TCTAGCTCAATGGCGAGACT	58.231	50.000	0.00	0.00	38.62	3.24
2353	5956	3.066342	CCAAAGCACATCTAGCTCAATGG	59.934	47.826	11.68	0.00	42.53	3.16
2360	5963	3.273434	TGTCATCCAAAGCACATCTAGC	58.727	45.455	0.00	0.00	0.00	3.42
2418	6021	2.424601	CACATGCACTTACCATGGGAAG	59.575	50.000	31.80	31.80	44.83	3.46
2442	6045	1.383963	AGTCCAGGACTCCCTCAGTA	58.616	55.000	17.31	0.00	38.71	2.74
2500	6103	5.710646	TCTATCTTCTCAGCCCATTAGTCT	58.289	41.667	0.00	0.00	0.00	3.24
2522	6125	1.746787	GGGAGAGAGTCTTCGGTCTTC	59.253	57.143	0.00	0.00	0.00	2.87
2547	6153	1.186200	CCAAGGAGAGTCACATCCGA	58.814	55.000	0.00	0.00	40.73	4.55
2554	6160	1.118965	TTCCACGCCAAGGAGAGTCA	61.119	55.000	0.00	0.00	36.33	3.41
2624	6230	1.274011	GGGAGGGGACTAGGGTTGTAA	60.274	57.143	0.00	0.00	44.43	2.41
2644	6250	9.347934	CTAAGCTCTCCAATTTATATAGACACG	57.652	37.037	0.00	0.00	0.00	4.49
2659	6265	2.693591	CCAATACGGACTAAGCTCTCCA	59.306	50.000	6.01	0.00	36.56	3.86
2664	6270	1.129058	CCCCCAATACGGACTAAGCT	58.871	55.000	0.00	0.00	36.56	3.74
2678	6284	6.815880	ACTATGATTATCTATCTGTCCCCCA	58.184	40.000	0.00	0.00	34.17	4.96
2714	6322	6.240145	TCGTAATGGCTAAACCCTAAAAGTT	58.760	36.000	0.00	0.00	37.83	2.66
2814	6423	2.122954	AGGTTCGGGCCCTCTCTT	59.877	61.111	22.43	2.79	0.00	2.85
2967	10220	5.178096	TGATTGAAGGAGCCATCAAACTA	57.822	39.130	10.75	0.00	37.23	2.24
2968	10221	4.038271	TGATTGAAGGAGCCATCAAACT	57.962	40.909	10.75	0.00	37.23	2.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.