Multiple sequence alignment - TraesCS7A01G215300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G215300 chr7A 100.000 4892 0 0 1 4892 181012059 181016950 0.000000e+00 9034
1 TraesCS7A01G215300 chr7A 93.989 4858 274 9 36 4892 180841046 180845886 0.000000e+00 7337
2 TraesCS7A01G215300 chr7A 93.503 4156 259 11 745 4892 181166878 181171030 0.000000e+00 6168
3 TraesCS7A01G215300 chr7A 94.701 3397 175 5 1498 4892 180983536 180986929 0.000000e+00 5271
4 TraesCS7A01G215300 chr7A 93.200 3412 225 6 972 4380 181048594 181052001 0.000000e+00 5009
5 TraesCS7A01G215300 chr7A 91.588 1474 121 3 36 1506 180971269 180972742 0.000000e+00 2032
6 TraesCS7A01G215300 chr7A 89.053 1352 122 13 36 1379 422406413 422405080 0.000000e+00 1653
7 TraesCS7A01G215300 chr7A 90.461 933 83 5 36 966 181046087 181047015 0.000000e+00 1225
8 TraesCS7A01G215300 chr7A 88.013 901 89 10 31 928 121180406 121179522 0.000000e+00 1048
9 TraesCS7A01G215300 chr7A 91.667 516 40 2 4379 4892 181134904 181135418 0.000000e+00 712
10 TraesCS7A01G215300 chr7A 85.354 396 41 8 31 424 23214328 23213948 1.280000e-105 394
11 TraesCS7A01G215300 chr3D 91.131 2830 234 12 1380 4207 78095473 78098287 0.000000e+00 3819
12 TraesCS7A01G215300 chr3D 91.095 2830 234 13 1380 4207 77997781 78000594 0.000000e+00 3814
13 TraesCS7A01G215300 chr3D 91.210 694 60 1 4200 4892 78098824 78099517 0.000000e+00 942
14 TraesCS7A01G215300 chr3D 90.922 694 62 1 4200 4892 78001129 78001822 0.000000e+00 931
15 TraesCS7A01G215300 chr3D 87.108 287 34 3 1737 2021 79247641 79247356 6.110000e-84 322
16 TraesCS7A01G215300 chr3D 85.950 121 16 1 1627 1747 238618556 238618437 1.430000e-25 128
17 TraesCS7A01G215300 chr3B 89.760 2832 238 27 1380 4207 124121877 124119094 0.000000e+00 3576
18 TraesCS7A01G215300 chr3B 90.454 1079 94 7 36 1108 249808397 249807322 0.000000e+00 1413
19 TraesCS7A01G215300 chr3B 90.258 698 61 6 4199 4892 124118561 124117867 0.000000e+00 905
20 TraesCS7A01G215300 chr3B 87.762 286 34 1 1737 2021 124552276 124551991 2.820000e-87 333
21 TraesCS7A01G215300 chr3B 84.328 134 20 1 1608 1741 816002772 816002640 3.970000e-26 130
22 TraesCS7A01G215300 chr7D 94.431 2119 106 3 2776 4892 177169041 177171149 0.000000e+00 3249
23 TraesCS7A01G215300 chr3A 92.595 1310 95 2 2899 4207 91285682 91284374 0.000000e+00 1881
24 TraesCS7A01G215300 chr3A 88.053 1515 150 9 1380 2892 91289642 91288157 0.000000e+00 1766
25 TraesCS7A01G215300 chr3A 88.150 692 65 2 4199 4890 91283863 91283189 0.000000e+00 808
26 TraesCS7A01G215300 chr4D 90.166 1322 116 5 2887 4207 388250875 388249567 0.000000e+00 1709
27 TraesCS7A01G215300 chr4D 87.031 1334 144 19 51 1376 41315198 41316510 0.000000e+00 1478
28 TraesCS7A01G215300 chr4D 83.134 1506 203 33 1380 2854 388252931 388251446 0.000000e+00 1327
29 TraesCS7A01G215300 chr4D 86.441 118 16 0 1627 1744 1403125 1403008 3.970000e-26 130
30 TraesCS7A01G215300 chr4D 84.553 123 19 0 1627 1749 234179256 234179134 6.650000e-24 122
31 TraesCS7A01G215300 chr4D 85.345 116 17 0 1627 1742 327425681 327425796 2.390000e-23 121
32 TraesCS7A01G215300 chr2D 88.627 1398 139 12 1 1380 462450511 462449116 0.000000e+00 1683
33 TraesCS7A01G215300 chr2D 86.555 119 16 0 1627 1745 263476483 263476601 1.100000e-26 132
34 TraesCS7A01G215300 chr2D 85.714 126 15 3 1627 1751 630017810 630017933 3.970000e-26 130
35 TraesCS7A01G215300 chr2D 84.496 129 20 0 1623 1751 26201358 26201230 1.430000e-25 128
36 TraesCS7A01G215300 chr5A 87.973 1347 145 8 36 1380 206531198 206529867 0.000000e+00 1574
37 TraesCS7A01G215300 chr1B 86.548 1353 148 19 36 1375 311231267 311229936 0.000000e+00 1459
38 TraesCS7A01G215300 chr1B 87.931 116 14 0 1627 1742 499898319 499898204 2.370000e-28 137
39 TraesCS7A01G215300 chr5D 87.387 1213 128 16 171 1376 190991871 190993065 0.000000e+00 1369
40 TraesCS7A01G215300 chr4B 82.816 1513 194 38 1380 2854 476573593 476572109 0.000000e+00 1293
41 TraesCS7A01G215300 chr4B 87.395 119 15 0 1624 1742 652917701 652917819 2.370000e-28 137
42 TraesCS7A01G215300 chr4A 82.626 1508 206 32 1380 2854 69513202 69511718 0.000000e+00 1282
43 TraesCS7A01G215300 chr4A 85.777 907 104 14 31 930 364976296 364975408 0.000000e+00 937
44 TraesCS7A01G215300 chr1D 85.232 237 30 3 1787 2019 17264287 17264522 6.330000e-59 239
45 TraesCS7A01G215300 chr1D 83.197 244 36 3 1780 2019 17289166 17289408 8.240000e-53 219
46 TraesCS7A01G215300 chr1D 86.957 115 14 1 1627 1741 287458698 287458585 1.430000e-25 128
47 TraesCS7A01G215300 chr1D 86.087 115 16 0 1627 1741 69193901 69194015 1.850000e-24 124
48 TraesCS7A01G215300 chr1D 82.517 143 24 1 1609 1751 85844763 85844622 1.850000e-24 124
49 TraesCS7A01G215300 chrUn 83.673 245 36 3 1780 2021 401030700 401030457 1.370000e-55 228
50 TraesCS7A01G215300 chrUn 87.288 118 15 0 1627 1744 97740069 97740186 8.540000e-28 135
51 TraesCS7A01G215300 chrUn 85.217 115 17 0 1627 1741 33028291 33028177 8.600000e-23 119
52 TraesCS7A01G215300 chrUn 84.348 115 18 0 1627 1741 88642467 88642581 4.000000e-21 113
53 TraesCS7A01G215300 chrUn 84.348 115 18 0 1627 1741 283732558 283732672 4.000000e-21 113
54 TraesCS7A01G215300 chrUn 81.955 133 23 1 1627 1759 103121257 103121388 1.440000e-20 111
55 TraesCS7A01G215300 chrUn 83.333 114 19 0 1628 1741 53314394 53314281 6.700000e-19 106
56 TraesCS7A01G215300 chr7B 86.885 122 16 0 1627 1748 187524706 187524585 2.370000e-28 137
57 TraesCS7A01G215300 chr6D 86.087 115 16 0 1627 1741 85585038 85585152 1.850000e-24 124
58 TraesCS7A01G215300 chr6D 85.217 115 17 0 1627 1741 231695114 231695228 8.600000e-23 119
59 TraesCS7A01G215300 chr6D 83.333 126 19 2 1627 1751 73713847 73713971 1.110000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G215300 chr7A 181012059 181016950 4891 False 9034.0 9034 100.000000 1 4892 1 chr7A.!!$F4 4891
1 TraesCS7A01G215300 chr7A 180841046 180845886 4840 False 7337.0 7337 93.989000 36 4892 1 chr7A.!!$F1 4856
2 TraesCS7A01G215300 chr7A 181166878 181171030 4152 False 6168.0 6168 93.503000 745 4892 1 chr7A.!!$F6 4147
3 TraesCS7A01G215300 chr7A 180983536 180986929 3393 False 5271.0 5271 94.701000 1498 4892 1 chr7A.!!$F3 3394
4 TraesCS7A01G215300 chr7A 181046087 181052001 5914 False 3117.0 5009 91.830500 36 4380 2 chr7A.!!$F7 4344
5 TraesCS7A01G215300 chr7A 180971269 180972742 1473 False 2032.0 2032 91.588000 36 1506 1 chr7A.!!$F2 1470
6 TraesCS7A01G215300 chr7A 422405080 422406413 1333 True 1653.0 1653 89.053000 36 1379 1 chr7A.!!$R3 1343
7 TraesCS7A01G215300 chr7A 121179522 121180406 884 True 1048.0 1048 88.013000 31 928 1 chr7A.!!$R2 897
8 TraesCS7A01G215300 chr7A 181134904 181135418 514 False 712.0 712 91.667000 4379 4892 1 chr7A.!!$F5 513
9 TraesCS7A01G215300 chr3D 78095473 78099517 4044 False 2380.5 3819 91.170500 1380 4892 2 chr3D.!!$F2 3512
10 TraesCS7A01G215300 chr3D 77997781 78001822 4041 False 2372.5 3814 91.008500 1380 4892 2 chr3D.!!$F1 3512
11 TraesCS7A01G215300 chr3B 124117867 124121877 4010 True 2240.5 3576 90.009000 1380 4892 2 chr3B.!!$R4 3512
12 TraesCS7A01G215300 chr3B 249807322 249808397 1075 True 1413.0 1413 90.454000 36 1108 1 chr3B.!!$R2 1072
13 TraesCS7A01G215300 chr7D 177169041 177171149 2108 False 3249.0 3249 94.431000 2776 4892 1 chr7D.!!$F1 2116
14 TraesCS7A01G215300 chr3A 91283189 91289642 6453 True 1485.0 1881 89.599333 1380 4890 3 chr3A.!!$R1 3510
15 TraesCS7A01G215300 chr4D 388249567 388252931 3364 True 1518.0 1709 86.650000 1380 4207 2 chr4D.!!$R3 2827
16 TraesCS7A01G215300 chr4D 41315198 41316510 1312 False 1478.0 1478 87.031000 51 1376 1 chr4D.!!$F1 1325
17 TraesCS7A01G215300 chr2D 462449116 462450511 1395 True 1683.0 1683 88.627000 1 1380 1 chr2D.!!$R2 1379
18 TraesCS7A01G215300 chr5A 206529867 206531198 1331 True 1574.0 1574 87.973000 36 1380 1 chr5A.!!$R1 1344
19 TraesCS7A01G215300 chr1B 311229936 311231267 1331 True 1459.0 1459 86.548000 36 1375 1 chr1B.!!$R1 1339
20 TraesCS7A01G215300 chr5D 190991871 190993065 1194 False 1369.0 1369 87.387000 171 1376 1 chr5D.!!$F1 1205
21 TraesCS7A01G215300 chr4B 476572109 476573593 1484 True 1293.0 1293 82.816000 1380 2854 1 chr4B.!!$R1 1474
22 TraesCS7A01G215300 chr4A 69511718 69513202 1484 True 1282.0 1282 82.626000 1380 2854 1 chr4A.!!$R1 1474
23 TraesCS7A01G215300 chr4A 364975408 364976296 888 True 937.0 937 85.777000 31 930 1 chr4A.!!$R2 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 117 0.319727 AACGATTACGAACCGCCACA 60.320 50.0 0.00 0.0 42.66 4.17 F
136 150 0.893727 ATCCCCAGCAAACGTTCACC 60.894 55.0 0.00 0.0 0.00 4.02 F
1004 2619 0.173029 CATTTGGCAGGCGCAATGTA 59.827 50.0 10.83 0.0 41.24 2.29 F
2428 4110 0.329261 CCAGATCTGGGCACTTTGGA 59.671 55.0 31.14 0.0 46.81 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1004 2619 0.031010 GGAGGGAGTGGATGTAGGGT 60.031 60.0 0.00 0.0 0.00 4.34 R
1160 2775 0.940126 CGTGCATCTGGAACTATGCC 59.060 55.0 4.96 0.0 43.99 4.40 R
2937 7629 0.835276 CAGCCACTCTCCATCCATGA 59.165 55.0 0.00 0.0 0.00 3.07 R
4079 8773 2.561209 TCCTACTGCCCCTACATTGA 57.439 50.0 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 117 0.319727 AACGATTACGAACCGCCACA 60.320 50.000 0.00 0.00 42.66 4.17
136 150 0.893727 ATCCCCAGCAAACGTTCACC 60.894 55.000 0.00 0.00 0.00 4.02
137 151 1.826054 CCCCAGCAAACGTTCACCA 60.826 57.895 0.00 0.00 0.00 4.17
340 357 3.522392 AAAACACCCGGGGTTATAACA 57.478 42.857 27.92 0.00 31.02 2.41
367 384 1.671742 CTGACCACTAACGCCCACT 59.328 57.895 0.00 0.00 0.00 4.00
476 497 1.089920 GTGCATTGCTCGGAACATCT 58.910 50.000 10.49 0.00 0.00 2.90
548 574 8.966868 AGTAATCCCATGTGTAAAAACTAATGG 58.033 33.333 0.00 0.00 0.00 3.16
784 811 2.903784 TGGGAGAAAAGGATGAACGAGA 59.096 45.455 0.00 0.00 0.00 4.04
787 814 3.680458 GGAGAAAAGGATGAACGAGACAC 59.320 47.826 0.00 0.00 0.00 3.67
854 883 7.004555 ACAAAATTTCCATAGTTTCCTTCCC 57.995 36.000 0.00 0.00 0.00 3.97
968 1010 2.353803 GGACACCATCTACTGCTTCGTT 60.354 50.000 0.00 0.00 0.00 3.85
970 2585 4.491676 GACACCATCTACTGCTTCGTTTA 58.508 43.478 0.00 0.00 0.00 2.01
989 2604 1.144057 CTACTCCCGCGCTCCATTT 59.856 57.895 5.56 0.00 0.00 2.32
1004 2619 0.173029 CATTTGGCAGGCGCAATGTA 59.827 50.000 10.83 0.00 41.24 2.29
1067 2682 0.836830 GTCCCCTATAGCCACTCCCC 60.837 65.000 0.00 0.00 0.00 4.81
1210 2825 4.111198 CTGCTACTTCTATGAGTGCACAG 58.889 47.826 21.04 7.65 33.41 3.66
1281 2896 3.191581 CGTCTGTCAATCACTACTGTCCT 59.808 47.826 0.00 0.00 0.00 3.85
1416 3031 5.238214 GCCTTGACACTTGATGGATAGATTC 59.762 44.000 0.00 0.00 0.00 2.52
1465 3083 9.325198 CTATGTATGTAGTATTGGTTGCAAAGA 57.675 33.333 0.00 0.00 0.00 2.52
1625 3248 7.611467 TGACTCCACAAATATGCTTAATGACTT 59.389 33.333 3.69 0.00 0.00 3.01
1931 3565 4.957296 TCAGTAGGAACAAAACAGACTCC 58.043 43.478 0.00 0.00 0.00 3.85
2036 3670 0.742505 ATACGAAGCGAACATCGGGA 59.257 50.000 1.64 0.00 41.15 5.14
2204 3876 2.438434 GGTCCATCGTGGCCTTGG 60.438 66.667 3.32 6.27 37.47 3.61
2296 3977 4.436998 CTCGGTCAGCGGTGGTCC 62.437 72.222 15.67 15.82 0.00 4.46
2428 4110 0.329261 CCAGATCTGGGCACTTTGGA 59.671 55.000 31.14 0.00 46.81 3.53
2514 4206 1.218316 GGGCGACGATTGTCTCCTT 59.782 57.895 19.38 0.00 46.95 3.36
2702 4396 2.428622 CGGGTCCGTTGTTCCCTT 59.571 61.111 0.55 0.00 39.10 3.95
2847 4543 0.551396 GGGATTTTGGGTCGGGAGAT 59.449 55.000 0.00 0.00 43.27 2.75
2883 5106 4.339814 TCCTTTCATGTGCGGTTTTAACTT 59.660 37.500 0.00 0.00 0.00 2.66
2897 7588 6.428771 CGGTTTTAACTTCTACCTTCCATTCA 59.571 38.462 0.00 0.00 0.00 2.57
3057 7749 2.121129 TGATGAGATGGATGGTCTGCA 58.879 47.619 0.00 0.00 0.00 4.41
3097 7789 2.762327 GGGAAACACTGATGATGCCAAT 59.238 45.455 0.00 0.00 30.79 3.16
3118 7810 1.067516 GTTGTTGCTGCAGACCACAAT 59.932 47.619 20.43 0.00 0.00 2.71
3136 7828 5.171476 CACAATAACAACGATGGAGAGACT 58.829 41.667 0.00 0.00 0.00 3.24
3157 7849 4.197750 CTCATAGTGAGCAGAAAATGGCT 58.802 43.478 0.00 0.00 44.48 4.75
3159 7851 5.744171 TCATAGTGAGCAGAAAATGGCTAA 58.256 37.500 0.00 0.00 41.22 3.09
3180 7872 2.457813 AGGCATGCCAATTATCACCA 57.542 45.000 37.18 0.00 38.92 4.17
3261 7953 8.644216 TGTTTCTTACCTAGTGAAGATGTGTAA 58.356 33.333 4.81 0.00 31.91 2.41
3268 7960 7.434492 ACCTAGTGAAGATGTGTAATAATCCG 58.566 38.462 0.00 0.00 0.00 4.18
3502 8194 8.630054 TTGCTGTTAAATAGTACAAACTCCAT 57.370 30.769 0.00 0.00 37.15 3.41
3519 8211 9.853555 CAAACTCCATTTAACATTGTAGCATTA 57.146 29.630 0.00 0.00 0.00 1.90
3832 8525 3.451178 GGAAGAACTCCTACATGCCACTA 59.549 47.826 0.00 0.00 41.61 2.74
3877 8570 1.315257 AAATGGCATGTCGCTCCCAC 61.315 55.000 0.00 0.00 41.91 4.61
3905 8599 3.609853 GCAACTGACCATACCATCTTCA 58.390 45.455 0.00 0.00 0.00 3.02
4261 10558 2.223479 CCAAGGACGGTGAGTTTGTTTG 60.223 50.000 0.00 0.00 0.00 2.93
4264 10561 2.878406 AGGACGGTGAGTTTGTTTGATG 59.122 45.455 0.00 0.00 0.00 3.07
4438 10735 6.495181 CCTCTAAATGGAGAAGCTCATAGGTA 59.505 42.308 0.00 0.00 35.52 3.08
4443 10740 5.957771 TGGAGAAGCTCATAGGTATGTTT 57.042 39.130 0.00 0.00 35.26 2.83
4669 10967 5.182487 TGGTAACATTGATAACACGAGCAT 58.818 37.500 0.00 0.00 46.17 3.79
4761 11061 1.067974 ACCTCACAATGAACGACACGA 59.932 47.619 0.00 0.00 0.00 4.35
4768 11068 0.873054 ATGAACGACACGACGAGACT 59.127 50.000 0.00 0.00 37.03 3.24
4796 11096 1.522569 GCTTAGGAGGACGTGCCAT 59.477 57.895 2.38 0.00 40.02 4.40
4857 11157 3.558411 GCTTAGAGCTGGTGCGCG 61.558 66.667 0.00 0.00 43.79 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 117 1.992557 TGGGGATTGGAGTTAGCACTT 59.007 47.619 0.00 0.00 31.22 3.16
136 150 0.607217 TGCAACTGCCATGTCTCCTG 60.607 55.000 0.00 0.00 41.18 3.86
137 151 0.111061 TTGCAACTGCCATGTCTCCT 59.889 50.000 0.00 0.00 41.18 3.69
159 173 3.803778 CGTACTGTAACTTTTTCGTGGGT 59.196 43.478 0.00 0.00 0.00 4.51
167 181 5.754890 CCCTTACACACGTACTGTAACTTTT 59.245 40.000 11.97 0.00 32.05 2.27
234 248 3.652057 AACCGTCAGATTTCCATCCAT 57.348 42.857 0.00 0.00 0.00 3.41
548 574 9.913451 CTTTTTCTGATGAAATTCTCGAGATAC 57.087 33.333 17.44 8.61 41.24 2.24
668 695 2.474133 ATCCCCATGCCTTTGCCCAA 62.474 55.000 0.00 0.00 36.33 4.12
705 732 1.355381 AGAACAATCTGGCATGGTGGA 59.645 47.619 0.00 0.00 33.59 4.02
784 811 2.298729 ACATTTGCAAATAAGGCCGTGT 59.701 40.909 23.69 13.80 0.00 4.49
787 814 3.229276 TCACATTTGCAAATAAGGCCG 57.771 42.857 23.69 12.99 0.00 6.13
854 883 5.163571 CCATCTGGTCTATATCTGACGGATG 60.164 48.000 20.44 20.44 40.52 3.51
968 1010 0.754217 ATGGAGCGCGGGAGTAGTAA 60.754 55.000 8.83 0.00 0.00 2.24
970 2585 1.614241 AAATGGAGCGCGGGAGTAGT 61.614 55.000 8.83 0.00 0.00 2.73
989 2604 2.749839 GGTACATTGCGCCTGCCA 60.750 61.111 4.18 0.00 41.78 4.92
1004 2619 0.031010 GGAGGGAGTGGATGTAGGGT 60.031 60.000 0.00 0.00 0.00 4.34
1067 2682 1.002134 ACCAGGCCGTCCATGAAAG 60.002 57.895 0.00 0.00 33.74 2.62
1157 2772 1.565759 TGCATCTGGAACTATGCCCTT 59.434 47.619 4.96 0.00 43.99 3.95
1160 2775 0.940126 CGTGCATCTGGAACTATGCC 59.060 55.000 4.96 0.00 43.99 4.40
1281 2896 5.474825 TCATACTTGATGTTTACTGTCGCA 58.525 37.500 0.00 0.00 36.84 5.10
1625 3248 4.286813 AGTAATTCTGGATGGAGGGAGA 57.713 45.455 0.00 0.00 0.00 3.71
1931 3565 7.711339 AGAACTTCAGTAGGTGAAAAAGTACAG 59.289 37.037 0.00 0.00 44.83 2.74
2036 3670 1.446792 CGCCTCTGTCTCACGCAAT 60.447 57.895 0.00 0.00 0.00 3.56
2204 3876 4.394712 AGCCAGCACCACGTAGGC 62.395 66.667 0.00 0.00 45.54 3.93
2228 3900 1.697982 GTGTGTGGGGAAAGACCTACT 59.302 52.381 0.00 0.00 42.02 2.57
2702 4396 4.102054 CGGGGCCTAGAGGAAGTAATTAAA 59.898 45.833 0.84 0.00 37.39 1.52
2847 4543 6.574073 GCACATGAAAGGAACCAAAATGGATA 60.574 38.462 0.00 0.00 40.96 2.59
2883 5106 4.412199 CCCCTATGTTGAATGGAAGGTAGA 59.588 45.833 0.00 0.00 0.00 2.59
2897 7588 9.320295 TCAAAAAGAATGTTATTCCCCTATGTT 57.680 29.630 0.00 0.00 0.00 2.71
2937 7629 0.835276 CAGCCACTCTCCATCCATGA 59.165 55.000 0.00 0.00 0.00 3.07
3057 7749 2.370281 CACGACAGTAGTGGCTTCAT 57.630 50.000 5.92 0.00 36.06 2.57
3097 7789 0.679321 TGTGGTCTGCAGCAACAACA 60.679 50.000 9.47 10.32 0.00 3.33
3118 7810 5.886474 ACTATGAGTCTCTCCATCGTTGTTA 59.114 40.000 0.65 0.00 0.00 2.41
3136 7828 4.226427 AGCCATTTTCTGCTCACTATGA 57.774 40.909 0.00 0.00 30.33 2.15
3150 7842 2.696989 GGCATGCCTTTTAGCCATTT 57.303 45.000 29.98 0.00 46.26 2.32
3157 7849 4.713814 TGGTGATAATTGGCATGCCTTTTA 59.286 37.500 35.53 29.18 36.94 1.52
3159 7851 3.106054 TGGTGATAATTGGCATGCCTTT 58.894 40.909 35.53 28.48 36.94 3.11
3180 7872 6.653020 TGTAGGATTTGTTCACTATGCAGAT 58.347 36.000 0.00 0.00 0.00 2.90
3268 7960 9.546909 CACACTACAGATCATGTTAATGAAAAC 57.453 33.333 0.00 0.00 45.81 2.43
3659 8352 4.870021 AGCCTCTCATTTTCTACCCAAT 57.130 40.909 0.00 0.00 0.00 3.16
3832 8525 5.395435 GGCGAAGACCTTCTTTAAGATAGGT 60.395 44.000 20.53 20.53 36.73 3.08
3905 8599 8.082242 GCGGAATAATTAACATTGGCTAAGATT 58.918 33.333 0.00 0.00 0.00 2.40
3925 8619 8.612619 CAAGTAAAACTATAGTTCATGCGGAAT 58.387 33.333 18.28 0.00 37.93 3.01
4079 8773 2.561209 TCCTACTGCCCCTACATTGA 57.439 50.000 0.00 0.00 0.00 2.57
4438 10735 3.997021 CTCTACTGAACGGCAAGAAACAT 59.003 43.478 0.00 0.00 0.00 2.71
4443 10740 1.257743 AGCTCTACTGAACGGCAAGA 58.742 50.000 0.00 0.00 0.00 3.02
4603 10901 2.653234 AATCTCACCAGATGGCATCC 57.347 50.000 23.33 6.35 38.55 3.51
4649 10947 7.762159 TCAACTATGCTCGTGTTATCAATGTTA 59.238 33.333 0.00 0.00 0.00 2.41
4669 10967 0.320374 CTTGCCCGGTGACTCAACTA 59.680 55.000 0.00 0.00 0.00 2.24
4761 11061 0.900647 AGCCAGCAGGTTAGTCTCGT 60.901 55.000 0.00 0.00 37.19 4.18
4768 11068 1.204146 CCTCCTAAGCCAGCAGGTTA 58.796 55.000 0.00 0.00 37.40 2.85
4796 11096 3.572682 CCTGGTCATCGCCATAACTAGTA 59.427 47.826 0.00 0.00 37.96 1.82
4857 11157 0.820871 ATCCTCGCTTGAGAGACCAC 59.179 55.000 3.00 0.00 42.66 4.16
4861 11161 2.426842 TCTCATCCTCGCTTGAGAGA 57.573 50.000 3.00 0.00 42.52 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.