Multiple sequence alignment - TraesCS7A01G215100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G215100 chr7A 100.000 3917 0 0 1 3917 180646738 180650654 0.000000e+00 7234.0
1 TraesCS7A01G215100 chr7D 92.696 1821 82 27 1 1788 177104183 177105985 0.000000e+00 2579.0
2 TraesCS7A01G215100 chr7D 95.936 812 33 0 1817 2628 177105983 177106794 0.000000e+00 1317.0
3 TraesCS7A01G215100 chr7D 95.538 650 25 3 3271 3917 177107536 177108184 0.000000e+00 1037.0
4 TraesCS7A01G215100 chr7D 93.349 436 15 10 2627 3056 177106959 177107386 1.990000e-177 632.0
5 TraesCS7A01G215100 chr7D 91.781 73 5 1 3209 3280 7539096 7539024 2.490000e-17 100.0
6 TraesCS7A01G215100 chr7D 95.000 60 3 0 3093 3152 177107486 177107545 1.160000e-15 95.3
7 TraesCS7A01G215100 chr7D 91.379 58 5 0 3209 3266 7594169 7594112 3.240000e-11 80.5
8 TraesCS7A01G215100 chr7D 97.143 35 0 1 3050 3084 49664823 49664790 1.520000e-04 58.4
9 TraesCS7A01G215100 chr7B 92.571 1723 85 18 927 2641 143322820 143324507 0.000000e+00 2433.0
10 TraesCS7A01G215100 chr7B 95.751 659 16 5 3271 3917 143325046 143325704 0.000000e+00 1051.0
11 TraesCS7A01G215100 chr7B 93.537 557 27 6 2654 3208 143324491 143325040 0.000000e+00 821.0
12 TraesCS7A01G215100 chr7B 92.706 521 24 5 1 519 143321954 143322462 0.000000e+00 739.0
13 TraesCS7A01G215100 chr4A 93.750 64 4 0 3209 3272 731937805 731937742 3.220000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G215100 chr7A 180646738 180650654 3916 False 7234.00 7234 100.00000 1 3917 1 chr7A.!!$F1 3916
1 TraesCS7A01G215100 chr7D 177104183 177108184 4001 False 1132.06 2579 94.50380 1 3917 5 chr7D.!!$F1 3916
2 TraesCS7A01G215100 chr7B 143321954 143325704 3750 False 1261.00 2433 93.64125 1 3917 4 chr7B.!!$F1 3916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
470 471 0.110644 GCGTGTGCAAGCTGTTAGTC 60.111 55.0 3.0 0.0 42.15 2.59 F
864 923 1.019673 TCCGTGACCATACTACGCTC 58.980 55.0 0.0 0.0 36.56 5.03 F
1527 1611 0.249573 CTTGTTTGGGGCAAGCAGTG 60.250 55.0 0.0 0.0 36.11 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 1454 0.108851 CCCAAAATAACAGCACGGCC 60.109 55.0 0.0 0.0 0.00 6.13 R
2370 2458 0.250640 AAGACTGCTGTGAAGGCTGG 60.251 55.0 0.0 0.0 31.66 4.85 R
3213 3577 0.178995 TGCACATCCAGCAACCTCAA 60.179 50.0 0.0 0.0 39.39 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 195 4.656117 TCACCGTGCGCGTCATGT 62.656 61.111 19.61 6.17 36.15 3.21
334 335 3.692406 GGCGACGGGAAGACCAGT 61.692 66.667 0.00 0.00 46.44 4.00
438 439 1.011463 CATGAGATGCTCGTTGCGC 60.011 57.895 0.00 0.00 46.63 6.09
470 471 0.110644 GCGTGTGCAAGCTGTTAGTC 60.111 55.000 3.00 0.00 42.15 2.59
471 472 1.502231 CGTGTGCAAGCTGTTAGTCT 58.498 50.000 0.00 0.00 0.00 3.24
473 474 2.760374 GTGTGCAAGCTGTTAGTCTCT 58.240 47.619 0.00 0.00 0.00 3.10
486 487 2.821991 AGTCTCTTTCCAAGGTCGTG 57.178 50.000 0.00 0.00 0.00 4.35
569 572 6.189677 TGGTAGCATGTTGTGTTAATTAGC 57.810 37.500 0.00 0.00 0.00 3.09
571 574 7.106890 TGGTAGCATGTTGTGTTAATTAGCTA 58.893 34.615 0.83 0.00 0.00 3.32
576 579 9.173021 AGCATGTTGTGTTAATTAGCTATTACA 57.827 29.630 0.00 0.00 0.00 2.41
589 641 7.997107 TTAGCTATTACATAGTTTGGTCGTG 57.003 36.000 0.00 0.00 35.29 4.35
610 663 5.113529 CGTGATTTGTTAACTTCTTGCGAAC 59.886 40.000 7.22 0.00 0.00 3.95
611 664 5.113529 GTGATTTGTTAACTTCTTGCGAACG 59.886 40.000 7.22 0.00 0.00 3.95
612 665 4.861389 TTTGTTAACTTCTTGCGAACGA 57.139 36.364 7.22 0.00 0.00 3.85
613 666 4.861389 TTGTTAACTTCTTGCGAACGAA 57.139 36.364 7.22 0.00 0.00 3.85
617 670 2.316119 ACTTCTTGCGAACGAATTGC 57.684 45.000 0.00 0.00 0.00 3.56
732 791 9.612066 AAACTCTTAATTTTCTTTTTGATGGCA 57.388 25.926 0.00 0.00 0.00 4.92
736 795 9.643693 TCTTAATTTTCTTTTTGATGGCATCTC 57.356 29.630 26.49 5.03 0.00 2.75
737 796 9.649167 CTTAATTTTCTTTTTGATGGCATCTCT 57.351 29.630 26.49 0.00 0.00 3.10
741 800 8.816640 TTTTCTTTTTGATGGCATCTCTAAAC 57.183 30.769 26.49 1.04 0.00 2.01
742 801 7.523293 TTCTTTTTGATGGCATCTCTAAACA 57.477 32.000 26.49 11.96 0.00 2.83
743 802 7.149569 TCTTTTTGATGGCATCTCTAAACAG 57.850 36.000 26.49 19.33 0.00 3.16
746 805 4.412796 TGATGGCATCTCTAAACAGGAG 57.587 45.455 26.49 0.00 0.00 3.69
747 806 4.033009 TGATGGCATCTCTAAACAGGAGA 58.967 43.478 26.49 0.20 42.89 3.71
754 813 6.704050 GGCATCTCTAAACAGGAGATTTCTAC 59.296 42.308 3.80 0.00 45.02 2.59
862 921 2.124903 CATTCCGTGACCATACTACGC 58.875 52.381 0.00 0.00 36.56 4.42
864 923 1.019673 TCCGTGACCATACTACGCTC 58.980 55.000 0.00 0.00 36.56 5.03
869 928 3.546417 CGTGACCATACTACGCTCTTCTC 60.546 52.174 0.00 0.00 0.00 2.87
882 941 2.600867 GCTCTTCTCGTTGAGAATTCCG 59.399 50.000 9.49 0.00 45.84 4.30
913 973 3.941088 CGTTTACGTACTCCTGAAACG 57.059 47.619 13.72 13.72 44.13 3.60
915 975 3.052036 GTTTACGTACTCCTGAAACGCA 58.948 45.455 0.00 0.00 40.18 5.24
916 976 2.624316 TACGTACTCCTGAAACGCAG 57.376 50.000 0.00 0.00 44.49 5.18
951 1025 4.785453 CGCCTCTTCCAGCCACCC 62.785 72.222 0.00 0.00 0.00 4.61
956 1030 1.831652 CTCTTCCAGCCACCCGTCTT 61.832 60.000 0.00 0.00 0.00 3.01
1094 1168 4.346709 GGGGAAGATAGAAGAAGGAGAAGG 59.653 50.000 0.00 0.00 0.00 3.46
1128 1202 3.518998 CGGCGAGAGGTGACGGAT 61.519 66.667 0.00 0.00 0.00 4.18
1271 1345 4.477975 CTCCGTCGTCCAGGTCGC 62.478 72.222 0.55 0.00 0.00 5.19
1335 1411 1.640917 TCAGTCACAGTTAGGTCCCC 58.359 55.000 0.00 0.00 0.00 4.81
1372 1448 4.018324 GGTTCCTAACCCTTCTCTCCAAAT 60.018 45.833 0.00 0.00 46.12 2.32
1402 1478 2.525368 GTGCTGTTATTTTGGGGAGGT 58.475 47.619 0.00 0.00 0.00 3.85
1409 1486 5.919755 TGTTATTTTGGGGAGGTGAAAAAC 58.080 37.500 0.00 0.00 0.00 2.43
1412 1489 4.910458 TTTTGGGGAGGTGAAAAACAAA 57.090 36.364 0.00 0.00 0.00 2.83
1508 1585 1.247567 CCTTGGGTGGTGAATGTGTC 58.752 55.000 0.00 0.00 0.00 3.67
1527 1611 0.249573 CTTGTTTGGGGCAAGCAGTG 60.250 55.000 0.00 0.00 36.11 3.66
1612 1696 8.799091 CGATGCTAAATTATGTAGGACGATTAG 58.201 37.037 0.00 0.00 0.00 1.73
1637 1721 6.128227 GCATATTTGGCATGTTGTTTGATTGT 60.128 34.615 0.00 0.00 0.00 2.71
1638 1722 5.676532 ATTTGGCATGTTGTTTGATTGTG 57.323 34.783 0.00 0.00 0.00 3.33
1676 1760 7.148069 GGTACTTCCAAACCATTTAGAGAATGG 60.148 40.741 14.51 14.51 43.07 3.16
1760 1844 7.385752 TGAAACGAAAATTAGACTACGGACAAT 59.614 33.333 0.00 0.00 0.00 2.71
1788 1875 7.110155 GGGATACAAAAGAACAGTCAGGATAA 58.890 38.462 0.00 0.00 39.74 1.75
1789 1876 7.281100 GGGATACAAAAGAACAGTCAGGATAAG 59.719 40.741 0.00 0.00 39.74 1.73
1790 1877 7.824779 GGATACAAAAGAACAGTCAGGATAAGT 59.175 37.037 0.00 0.00 0.00 2.24
1791 1878 9.871238 GATACAAAAGAACAGTCAGGATAAGTA 57.129 33.333 0.00 0.00 0.00 2.24
1793 1880 8.553459 ACAAAAGAACAGTCAGGATAAGTATG 57.447 34.615 0.00 0.00 0.00 2.39
1794 1881 8.375506 ACAAAAGAACAGTCAGGATAAGTATGA 58.624 33.333 0.00 0.00 0.00 2.15
1795 1882 8.877779 CAAAAGAACAGTCAGGATAAGTATGAG 58.122 37.037 0.00 0.00 0.00 2.90
1796 1883 6.723298 AGAACAGTCAGGATAAGTATGAGG 57.277 41.667 0.00 0.00 0.00 3.86
1797 1884 6.436027 AGAACAGTCAGGATAAGTATGAGGA 58.564 40.000 0.00 0.00 0.00 3.71
1798 1885 6.549364 AGAACAGTCAGGATAAGTATGAGGAG 59.451 42.308 0.00 0.00 0.00 3.69
1799 1886 4.586841 ACAGTCAGGATAAGTATGAGGAGC 59.413 45.833 0.00 0.00 0.00 4.70
1800 1887 4.832266 CAGTCAGGATAAGTATGAGGAGCT 59.168 45.833 0.00 0.00 0.00 4.09
1801 1888 4.832266 AGTCAGGATAAGTATGAGGAGCTG 59.168 45.833 0.00 0.00 0.00 4.24
1802 1889 4.021544 GTCAGGATAAGTATGAGGAGCTGG 60.022 50.000 0.00 0.00 0.00 4.85
1803 1890 2.903135 AGGATAAGTATGAGGAGCTGGC 59.097 50.000 0.00 0.00 0.00 4.85
1804 1891 2.027653 GGATAAGTATGAGGAGCTGGCC 60.028 54.545 0.00 0.00 0.00 5.36
1805 1892 2.478872 TAAGTATGAGGAGCTGGCCT 57.521 50.000 3.32 0.00 42.17 5.19
1811 1898 2.691623 AGGAGCTGGCCTCATGCT 60.692 61.111 3.32 8.63 42.62 3.79
1812 1899 1.383664 AGGAGCTGGCCTCATGCTA 60.384 57.895 3.32 0.00 42.62 3.49
1838 1925 8.416329 AGTAATGCATTTTGTCAAACTCTTTCT 58.584 29.630 18.75 0.00 0.00 2.52
2001 2089 5.049405 CCACCTTAACAAAGTGTCTGATGTC 60.049 44.000 0.00 0.00 0.00 3.06
2014 2102 0.629596 TGATGTCCTCCTCCTACCGT 59.370 55.000 0.00 0.00 0.00 4.83
2030 2118 2.977914 ACCGTTACTAGTCGTCTAGCA 58.022 47.619 15.37 1.21 45.32 3.49
2082 2170 0.657840 ACAACTGACAAGAAGCGCAC 59.342 50.000 11.47 2.78 0.00 5.34
2483 2571 6.613271 ACAGATACAAGGGATGTTCAGACTAT 59.387 38.462 0.00 0.00 43.63 2.12
2595 2683 0.312102 GAAGAAGCCTGCCAACACAC 59.688 55.000 0.00 0.00 0.00 3.82
2645 2899 5.768164 GCTACTAGATGAGAGCTATATCCCC 59.232 48.000 0.00 0.00 32.04 4.81
2647 2901 7.202149 GCTACTAGATGAGAGCTATATCCCCTA 60.202 44.444 0.00 0.00 32.04 3.53
2648 2902 7.532459 ACTAGATGAGAGCTATATCCCCTAA 57.468 40.000 0.00 0.00 0.00 2.69
2691 2947 2.429478 GCTTTGTAGCCCGGACTAAAA 58.571 47.619 0.73 0.00 41.74 1.52
2695 2951 1.276989 TGTAGCCCGGACTAAAACTGG 59.723 52.381 0.73 0.00 0.00 4.00
2955 3211 1.600636 CTCCCTCCAGTTTTGCGCA 60.601 57.895 5.66 5.66 0.00 6.09
3006 3263 6.295292 GGGTTTCCTGATAATGCTTTGAACTT 60.295 38.462 0.00 0.00 0.00 2.66
3011 3268 6.015180 TCCTGATAATGCTTTGAACTTGCTTT 60.015 34.615 0.00 0.00 0.00 3.51
3012 3269 7.176515 TCCTGATAATGCTTTGAACTTGCTTTA 59.823 33.333 0.00 0.00 33.23 1.85
3013 3270 7.977853 CCTGATAATGCTTTGAACTTGCTTTAT 59.022 33.333 0.00 0.00 38.69 1.40
3058 3315 6.301687 TCTCTATCGAACTCTGTATTTCCG 57.698 41.667 0.00 0.00 0.00 4.30
3079 3336 5.477291 TCCGTTATGCCAAAGTAATGGAAAA 59.523 36.000 4.13 0.00 43.54 2.29
3083 3340 2.903135 TGCCAAAGTAATGGAAAAGGGG 59.097 45.455 0.00 0.00 43.54 4.79
3084 3341 3.169908 GCCAAAGTAATGGAAAAGGGGA 58.830 45.455 0.00 0.00 43.54 4.81
3085 3342 3.195610 GCCAAAGTAATGGAAAAGGGGAG 59.804 47.826 0.00 0.00 43.54 4.30
3086 3343 4.416516 CCAAAGTAATGGAAAAGGGGAGT 58.583 43.478 0.00 0.00 43.54 3.85
3087 3344 5.576128 CCAAAGTAATGGAAAAGGGGAGTA 58.424 41.667 0.00 0.00 43.54 2.59
3088 3345 5.652452 CCAAAGTAATGGAAAAGGGGAGTAG 59.348 44.000 0.00 0.00 43.54 2.57
3121 3485 3.503748 GCAACCTGCTACATTCTTTCTGT 59.496 43.478 0.00 0.00 40.96 3.41
3133 3497 5.598005 ACATTCTTTCTGTGGACCAAATGAA 59.402 36.000 16.22 11.88 0.00 2.57
3134 3498 5.514274 TTCTTTCTGTGGACCAAATGAAC 57.486 39.130 0.00 0.00 0.00 3.18
3147 3511 5.248870 CCAAATGAACTTGGCCTACATAC 57.751 43.478 3.32 0.00 39.55 2.39
3148 3512 4.704540 CCAAATGAACTTGGCCTACATACA 59.295 41.667 3.32 0.00 39.55 2.29
3149 3513 5.360714 CCAAATGAACTTGGCCTACATACAT 59.639 40.000 3.32 0.07 39.55 2.29
3150 3514 6.545666 CCAAATGAACTTGGCCTACATACATA 59.454 38.462 3.32 0.00 39.55 2.29
3151 3515 7.068103 CCAAATGAACTTGGCCTACATACATAA 59.932 37.037 3.32 0.00 39.55 1.90
3152 3516 8.632679 CAAATGAACTTGGCCTACATACATAAT 58.367 33.333 3.32 0.00 0.00 1.28
3153 3517 9.860650 AAATGAACTTGGCCTACATACATAATA 57.139 29.630 3.32 0.00 0.00 0.98
3154 3518 9.860650 AATGAACTTGGCCTACATACATAATAA 57.139 29.630 3.32 0.00 0.00 1.40
3155 3519 8.671384 TGAACTTGGCCTACATACATAATAAC 57.329 34.615 3.32 0.00 0.00 1.89
3156 3520 8.268605 TGAACTTGGCCTACATACATAATAACA 58.731 33.333 3.32 0.00 0.00 2.41
3157 3521 8.677148 AACTTGGCCTACATACATAATAACAG 57.323 34.615 3.32 0.00 0.00 3.16
3158 3522 7.224297 ACTTGGCCTACATACATAATAACAGG 58.776 38.462 3.32 0.00 0.00 4.00
3159 3523 7.071950 ACTTGGCCTACATACATAATAACAGGA 59.928 37.037 3.32 0.00 0.00 3.86
3160 3524 7.568128 TGGCCTACATACATAATAACAGGAT 57.432 36.000 3.32 0.00 0.00 3.24
3161 3525 8.673456 TGGCCTACATACATAATAACAGGATA 57.327 34.615 3.32 0.00 0.00 2.59
3162 3526 9.106977 TGGCCTACATACATAATAACAGGATAA 57.893 33.333 3.32 0.00 0.00 1.75
3163 3527 9.953565 GGCCTACATACATAATAACAGGATAAA 57.046 33.333 0.00 0.00 0.00 1.40
3174 3538 9.816354 ATAATAACAGGATAAAAATGTGCAACC 57.184 29.630 0.00 0.00 34.36 3.77
3175 3539 5.806654 AACAGGATAAAAATGTGCAACCT 57.193 34.783 0.00 0.00 34.36 3.50
3176 3540 5.138125 ACAGGATAAAAATGTGCAACCTG 57.862 39.130 0.00 0.00 45.93 4.00
3177 3541 3.928375 CAGGATAAAAATGTGCAACCTGC 59.072 43.478 0.00 0.00 45.29 4.85
3189 3553 2.407090 GCAACCTGCAACATTTCTTCC 58.593 47.619 0.00 0.00 44.26 3.46
3190 3554 2.036346 GCAACCTGCAACATTTCTTCCT 59.964 45.455 0.00 0.00 44.26 3.36
3191 3555 3.255642 GCAACCTGCAACATTTCTTCCTA 59.744 43.478 0.00 0.00 44.26 2.94
3192 3556 4.798574 CAACCTGCAACATTTCTTCCTAC 58.201 43.478 0.00 0.00 0.00 3.18
3193 3557 3.074412 ACCTGCAACATTTCTTCCTACG 58.926 45.455 0.00 0.00 0.00 3.51
3194 3558 2.420022 CCTGCAACATTTCTTCCTACGG 59.580 50.000 0.00 0.00 0.00 4.02
3195 3559 3.334691 CTGCAACATTTCTTCCTACGGA 58.665 45.455 0.00 0.00 0.00 4.69
3196 3560 3.071479 TGCAACATTTCTTCCTACGGAC 58.929 45.455 0.00 0.00 0.00 4.79
3197 3561 2.418976 GCAACATTTCTTCCTACGGACC 59.581 50.000 0.00 0.00 0.00 4.46
3198 3562 3.670625 CAACATTTCTTCCTACGGACCA 58.329 45.455 0.00 0.00 0.00 4.02
3199 3563 4.069304 CAACATTTCTTCCTACGGACCAA 58.931 43.478 0.00 0.00 0.00 3.67
3200 3564 4.360951 ACATTTCTTCCTACGGACCAAA 57.639 40.909 0.00 0.00 0.00 3.28
3201 3565 4.918588 ACATTTCTTCCTACGGACCAAAT 58.081 39.130 0.00 0.00 0.00 2.32
3202 3566 4.700213 ACATTTCTTCCTACGGACCAAATG 59.300 41.667 16.73 16.73 41.73 2.32
3203 3567 4.627284 TTTCTTCCTACGGACCAAATGA 57.373 40.909 0.00 0.00 0.00 2.57
3204 3568 3.887621 TCTTCCTACGGACCAAATGAG 57.112 47.619 0.00 0.00 0.00 2.90
3205 3569 3.170717 TCTTCCTACGGACCAAATGAGT 58.829 45.455 0.00 0.00 0.00 3.41
3206 3570 3.581332 TCTTCCTACGGACCAAATGAGTT 59.419 43.478 0.00 0.00 0.00 3.01
3207 3571 4.041198 TCTTCCTACGGACCAAATGAGTTT 59.959 41.667 0.00 0.00 0.00 2.66
3208 3572 4.360951 TCCTACGGACCAAATGAGTTTT 57.639 40.909 0.00 0.00 0.00 2.43
3209 3573 4.320870 TCCTACGGACCAAATGAGTTTTC 58.679 43.478 0.00 0.00 0.00 2.29
3210 3574 3.439129 CCTACGGACCAAATGAGTTTTCC 59.561 47.826 0.00 0.00 0.00 3.13
3211 3575 2.938838 ACGGACCAAATGAGTTTTCCA 58.061 42.857 0.00 0.00 28.75 3.53
3212 3576 2.884639 ACGGACCAAATGAGTTTTCCAG 59.115 45.455 0.00 0.00 28.75 3.86
3213 3577 2.884639 CGGACCAAATGAGTTTTCCAGT 59.115 45.455 0.00 0.00 28.75 4.00
3214 3578 3.317993 CGGACCAAATGAGTTTTCCAGTT 59.682 43.478 0.00 0.00 28.75 3.16
3215 3579 4.620982 GGACCAAATGAGTTTTCCAGTTG 58.379 43.478 0.00 0.00 38.76 3.16
3216 3580 4.340950 GGACCAAATGAGTTTTCCAGTTGA 59.659 41.667 0.00 0.00 40.70 3.18
3217 3581 5.507985 GGACCAAATGAGTTTTCCAGTTGAG 60.508 44.000 0.00 0.00 40.70 3.02
3218 3582 4.342092 ACCAAATGAGTTTTCCAGTTGAGG 59.658 41.667 0.00 0.00 40.70 3.86
3219 3583 4.342092 CCAAATGAGTTTTCCAGTTGAGGT 59.658 41.667 0.00 0.00 40.70 3.85
3220 3584 5.163416 CCAAATGAGTTTTCCAGTTGAGGTT 60.163 40.000 0.00 0.00 40.70 3.50
3221 3585 5.520376 AATGAGTTTTCCAGTTGAGGTTG 57.480 39.130 0.00 0.00 0.00 3.77
3222 3586 2.687935 TGAGTTTTCCAGTTGAGGTTGC 59.312 45.455 0.00 0.00 0.00 4.17
3223 3587 2.952310 GAGTTTTCCAGTTGAGGTTGCT 59.048 45.455 0.00 0.00 0.00 3.91
3224 3588 2.689983 AGTTTTCCAGTTGAGGTTGCTG 59.310 45.455 0.00 0.00 0.00 4.41
3229 3593 1.901591 CAGTTGAGGTTGCTGGATGT 58.098 50.000 0.00 0.00 0.00 3.06
3230 3594 1.538512 CAGTTGAGGTTGCTGGATGTG 59.461 52.381 0.00 0.00 0.00 3.21
3231 3595 0.242017 GTTGAGGTTGCTGGATGTGC 59.758 55.000 0.00 0.00 0.00 4.57
3232 3596 0.178995 TTGAGGTTGCTGGATGTGCA 60.179 50.000 0.00 0.00 38.80 4.57
3233 3597 0.178995 TGAGGTTGCTGGATGTGCAA 60.179 50.000 0.00 0.00 46.48 4.08
3237 3601 1.659233 TTGCTGGATGTGCAAACCG 59.341 52.632 0.00 0.00 45.81 4.44
3238 3602 2.126346 GCTGGATGTGCAAACCGC 60.126 61.111 0.00 0.00 42.89 5.68
3239 3603 2.176546 CTGGATGTGCAAACCGCG 59.823 61.111 0.00 0.00 46.97 6.46
3254 3618 4.740822 GCGCAGGTTGGGGTGGAT 62.741 66.667 0.30 0.00 0.00 3.41
3255 3619 2.751436 CGCAGGTTGGGGTGGATG 60.751 66.667 0.00 0.00 0.00 3.51
3256 3620 2.440599 GCAGGTTGGGGTGGATGT 59.559 61.111 0.00 0.00 0.00 3.06
3257 3621 1.978617 GCAGGTTGGGGTGGATGTG 60.979 63.158 0.00 0.00 0.00 3.21
3258 3622 1.978617 CAGGTTGGGGTGGATGTGC 60.979 63.158 0.00 0.00 0.00 4.57
3259 3623 2.162906 AGGTTGGGGTGGATGTGCT 61.163 57.895 0.00 0.00 0.00 4.40
3260 3624 1.678970 GGTTGGGGTGGATGTGCTC 60.679 63.158 0.00 0.00 0.00 4.26
3261 3625 1.380302 GTTGGGGTGGATGTGCTCT 59.620 57.895 0.00 0.00 0.00 4.09
3262 3626 0.678048 GTTGGGGTGGATGTGCTCTC 60.678 60.000 0.00 0.00 0.00 3.20
3263 3627 0.842030 TTGGGGTGGATGTGCTCTCT 60.842 55.000 0.00 0.00 0.00 3.10
3264 3628 0.842030 TGGGGTGGATGTGCTCTCTT 60.842 55.000 0.00 0.00 0.00 2.85
3265 3629 0.329596 GGGGTGGATGTGCTCTCTTT 59.670 55.000 0.00 0.00 0.00 2.52
3266 3630 1.559682 GGGGTGGATGTGCTCTCTTTA 59.440 52.381 0.00 0.00 0.00 1.85
3267 3631 2.420687 GGGGTGGATGTGCTCTCTTTAG 60.421 54.545 0.00 0.00 0.00 1.85
3268 3632 2.420687 GGGTGGATGTGCTCTCTTTAGG 60.421 54.545 0.00 0.00 0.00 2.69
3269 3633 2.284190 GTGGATGTGCTCTCTTTAGGC 58.716 52.381 0.00 0.00 0.00 3.93
3417 3781 7.803079 GTTGGAAACTTAATCAAGCATTCTC 57.197 36.000 0.00 0.00 45.32 2.87
3418 3782 6.182039 TGGAAACTTAATCAAGCATTCTCG 57.818 37.500 0.00 0.00 34.94 4.04
3456 3823 5.009010 ACAGGTTCAGCAAACAGAATTACAG 59.991 40.000 4.63 0.00 39.81 2.74
3479 3846 7.150640 CAGCATGATCTCTTTAGCACAGTATA 58.849 38.462 0.00 0.00 39.69 1.47
3627 4002 9.730420 GTTGTACAACATTTCTACATGAGTTTT 57.270 29.630 29.46 0.00 40.84 2.43
3705 4080 2.752030 TCTGACCCTCGAGGATTCATT 58.248 47.619 33.39 9.09 39.89 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
383 384 4.640690 ACCCACTCCCAGAGCGGT 62.641 66.667 0.00 0.00 30.58 5.68
438 439 1.081041 ACACGCACAATGCATGCAG 60.081 52.632 26.69 15.79 40.67 4.41
486 487 7.550906 AGTTAAGCAAATGATTCTAGACTGTCC 59.449 37.037 3.76 0.00 0.00 4.02
571 574 7.681939 ACAAATCACGACCAAACTATGTAAT 57.318 32.000 0.00 0.00 0.00 1.89
576 579 7.739498 AGTTAACAAATCACGACCAAACTAT 57.261 32.000 8.61 0.00 0.00 2.12
585 637 4.768145 CGCAAGAAGTTAACAAATCACGA 58.232 39.130 8.61 0.00 43.02 4.35
669 728 0.749649 GGTGGCACCAAAACATGTGA 59.250 50.000 31.26 0.00 38.42 3.58
695 754 8.134895 AGAAAATTAAGAGTTTCGTCATTGCAA 58.865 29.630 0.00 0.00 42.85 4.08
739 798 8.919145 CCTATACTTCAGTAGAAATCTCCTGTT 58.081 37.037 3.37 0.00 32.52 3.16
741 800 7.726291 TCCCTATACTTCAGTAGAAATCTCCTG 59.274 40.741 0.00 0.00 33.52 3.86
742 801 7.827787 TCCCTATACTTCAGTAGAAATCTCCT 58.172 38.462 0.00 0.00 33.52 3.69
743 802 7.726738 ACTCCCTATACTTCAGTAGAAATCTCC 59.273 40.741 0.00 0.00 33.52 3.71
747 806 9.884814 ACATACTCCCTATACTTCAGTAGAAAT 57.115 33.333 0.00 0.00 33.52 2.17
776 835 8.227791 CACGTTGCTTATAAGAAGCTAGAAAAA 58.772 33.333 16.85 0.00 43.38 1.94
783 842 4.755123 ACAACACGTTGCTTATAAGAAGCT 59.245 37.500 16.85 0.00 44.03 3.74
869 928 1.790755 TGGACACGGAATTCTCAACG 58.209 50.000 5.23 2.85 0.00 4.10
913 973 1.415200 CTAGGAGTTAGGTCCCCTGC 58.585 60.000 0.00 0.00 37.31 4.85
915 975 0.265254 GGCTAGGAGTTAGGTCCCCT 59.735 60.000 0.00 0.00 37.31 4.79
916 976 1.114119 CGGCTAGGAGTTAGGTCCCC 61.114 65.000 0.00 0.00 37.31 4.81
917 977 1.746322 GCGGCTAGGAGTTAGGTCCC 61.746 65.000 0.00 0.00 37.31 4.46
918 978 1.740905 GCGGCTAGGAGTTAGGTCC 59.259 63.158 0.00 0.00 36.79 4.46
919 979 0.756070 AGGCGGCTAGGAGTTAGGTC 60.756 60.000 11.03 0.00 0.00 3.85
920 980 0.756070 GAGGCGGCTAGGAGTTAGGT 60.756 60.000 13.24 0.00 0.00 3.08
921 981 0.468400 AGAGGCGGCTAGGAGTTAGG 60.468 60.000 13.24 0.00 0.00 2.69
922 982 1.338655 GAAGAGGCGGCTAGGAGTTAG 59.661 57.143 13.24 0.00 0.00 2.34
924 984 1.331399 GGAAGAGGCGGCTAGGAGTT 61.331 60.000 13.24 0.11 0.00 3.01
925 985 1.758906 GGAAGAGGCGGCTAGGAGT 60.759 63.158 13.24 0.00 0.00 3.85
928 1002 2.818132 CTGGAAGAGGCGGCTAGG 59.182 66.667 13.24 0.00 34.07 3.02
1079 1153 4.615513 CTTCCTCCCTTCTCCTTCTTCTA 58.384 47.826 0.00 0.00 0.00 2.10
1335 1411 3.915437 AGGAACCAATGTTAAACGCAG 57.085 42.857 0.00 0.00 33.97 5.18
1372 1448 0.538516 ATAACAGCACGGCCACCAAA 60.539 50.000 2.24 0.00 0.00 3.28
1378 1454 0.108851 CCCAAAATAACAGCACGGCC 60.109 55.000 0.00 0.00 0.00 6.13
1508 1585 0.249573 CACTGCTTGCCCCAAACAAG 60.250 55.000 0.00 0.00 45.88 3.16
1539 1623 3.631250 AGGTGCTCCAGAAAGAAAAACA 58.369 40.909 7.70 0.00 35.89 2.83
1540 1624 3.632145 TGAGGTGCTCCAGAAAGAAAAAC 59.368 43.478 7.70 0.00 35.89 2.43
1556 1640 6.090898 GCTTTACATACTGTTGTACTGAGGTG 59.909 42.308 0.00 0.00 31.98 4.00
1612 1696 6.128227 ACAATCAAACAACATGCCAAATATGC 60.128 34.615 0.00 0.00 0.00 3.14
1637 1721 2.303175 GAAGTACCAAACCACAAGGCA 58.697 47.619 0.00 0.00 39.06 4.75
1638 1722 1.611977 GGAAGTACCAAACCACAAGGC 59.388 52.381 0.00 0.00 37.18 4.35
1676 1760 1.222936 CCAGGGACAGAGTGATGCC 59.777 63.158 0.00 0.00 0.00 4.40
1760 1844 5.534654 CCTGACTGTTCTTTTGTATCCCAAA 59.465 40.000 0.00 0.00 41.25 3.28
1794 1881 1.383664 TAGCATGAGGCCAGCTCCT 60.384 57.895 14.09 0.00 46.50 3.69
1795 1882 1.071128 CTAGCATGAGGCCAGCTCC 59.929 63.158 14.09 0.00 46.50 4.70
1796 1883 1.043816 TACTAGCATGAGGCCAGCTC 58.956 55.000 14.09 0.00 46.50 4.09
1797 1884 1.500474 TTACTAGCATGAGGCCAGCT 58.500 50.000 5.01 11.46 46.50 4.24
1798 1885 2.149578 CATTACTAGCATGAGGCCAGC 58.850 52.381 5.01 3.02 46.50 4.85
1799 1886 2.149578 GCATTACTAGCATGAGGCCAG 58.850 52.381 5.01 0.00 46.50 4.85
1800 1887 1.490069 TGCATTACTAGCATGAGGCCA 59.510 47.619 5.01 0.00 46.50 5.36
1801 1888 2.260844 TGCATTACTAGCATGAGGCC 57.739 50.000 0.00 0.00 46.50 5.19
1809 1896 7.308435 AGAGTTTGACAAAATGCATTACTAGC 58.692 34.615 13.39 2.55 0.00 3.42
1810 1897 9.683069 AAAGAGTTTGACAAAATGCATTACTAG 57.317 29.630 13.39 5.64 0.00 2.57
1811 1898 9.677567 GAAAGAGTTTGACAAAATGCATTACTA 57.322 29.630 13.39 0.00 0.00 1.82
1812 1899 8.416329 AGAAAGAGTTTGACAAAATGCATTACT 58.584 29.630 13.39 10.37 0.00 2.24
1813 1900 8.482429 CAGAAAGAGTTTGACAAAATGCATTAC 58.518 33.333 13.39 5.23 0.00 1.89
1814 1901 7.169645 GCAGAAAGAGTTTGACAAAATGCATTA 59.830 33.333 13.39 0.00 0.00 1.90
1815 1902 6.018507 GCAGAAAGAGTTTGACAAAATGCATT 60.019 34.615 5.99 5.99 0.00 3.56
1816 1903 5.464389 GCAGAAAGAGTTTGACAAAATGCAT 59.536 36.000 5.47 0.00 0.00 3.96
1817 1904 4.805192 GCAGAAAGAGTTTGACAAAATGCA 59.195 37.500 5.47 0.00 0.00 3.96
1818 1905 4.209911 GGCAGAAAGAGTTTGACAAAATGC 59.790 41.667 5.47 1.87 0.00 3.56
1838 1925 4.515191 GGCTATCAAAACTTCGATATGGCA 59.485 41.667 0.00 0.00 0.00 4.92
2001 2089 3.475575 GACTAGTAACGGTAGGAGGAGG 58.524 54.545 0.00 0.00 0.00 4.30
2014 2102 4.097437 CCAATGGTGCTAGACGACTAGTAA 59.903 45.833 20.36 8.98 45.49 2.24
2030 2118 5.392595 CGAATTCCGTTATTGAACCAATGGT 60.393 40.000 0.00 0.00 35.54 3.55
2082 2170 3.005897 CCTCACGAGGGTTATATGACCAG 59.994 52.174 17.71 10.75 44.87 4.00
2351 2439 1.002251 GGACGCTGAGAATACTCTCCG 60.002 57.143 0.00 0.00 46.67 4.63
2370 2458 0.250640 AAGACTGCTGTGAAGGCTGG 60.251 55.000 0.00 0.00 31.66 4.85
2397 2485 5.708736 TCATGGACCTAACCAATGTGTAT 57.291 39.130 0.00 0.00 43.47 2.29
2472 2560 2.609491 GCCACGACACATAGTCTGAACA 60.609 50.000 0.00 0.00 45.32 3.18
2595 2683 2.884012 TGTGGCAAGTACCTTGTGATTG 59.116 45.455 5.92 0.00 42.77 2.67
2610 2698 3.706086 TCATCTAGTAGCAAGATGTGGCA 59.294 43.478 11.64 0.00 46.84 4.92
3006 3263 0.629058 GTGGGAAGGGGGATAAAGCA 59.371 55.000 0.00 0.00 0.00 3.91
3011 3268 1.243230 AGGAGGTGGGAAGGGGGATA 61.243 60.000 0.00 0.00 0.00 2.59
3012 3269 2.044620 GGAGGTGGGAAGGGGGAT 59.955 66.667 0.00 0.00 0.00 3.85
3013 3270 3.216371 AGGAGGTGGGAAGGGGGA 61.216 66.667 0.00 0.00 0.00 4.81
3058 3315 6.106003 CCCTTTTCCATTACTTTGGCATAAC 58.894 40.000 0.00 0.00 36.66 1.89
3121 3485 1.337118 GGCCAAGTTCATTTGGTCCA 58.663 50.000 0.00 0.00 45.09 4.02
3133 3497 7.071950 TCCTGTTATTATGTATGTAGGCCAAGT 59.928 37.037 5.01 0.00 0.00 3.16
3134 3498 7.450074 TCCTGTTATTATGTATGTAGGCCAAG 58.550 38.462 5.01 0.00 0.00 3.61
3148 3512 9.816354 GGTTGCACATTTTTATCCTGTTATTAT 57.184 29.630 0.00 0.00 0.00 1.28
3149 3513 9.030452 AGGTTGCACATTTTTATCCTGTTATTA 57.970 29.630 0.00 0.00 0.00 0.98
3150 3514 7.818930 CAGGTTGCACATTTTTATCCTGTTATT 59.181 33.333 0.00 0.00 37.16 1.40
3151 3515 7.322664 CAGGTTGCACATTTTTATCCTGTTAT 58.677 34.615 0.00 0.00 37.16 1.89
3152 3516 6.686630 CAGGTTGCACATTTTTATCCTGTTA 58.313 36.000 0.00 0.00 37.16 2.41
3153 3517 5.540911 CAGGTTGCACATTTTTATCCTGTT 58.459 37.500 0.00 0.00 37.16 3.16
3154 3518 4.561326 GCAGGTTGCACATTTTTATCCTGT 60.561 41.667 0.00 0.00 44.26 4.00
3155 3519 3.928375 GCAGGTTGCACATTTTTATCCTG 59.072 43.478 0.00 0.00 44.26 3.86
3156 3520 4.192429 GCAGGTTGCACATTTTTATCCT 57.808 40.909 0.00 0.00 44.26 3.24
3169 3533 2.036346 AGGAAGAAATGTTGCAGGTTGC 59.964 45.455 0.00 0.00 45.29 4.17
3170 3534 4.613622 CGTAGGAAGAAATGTTGCAGGTTG 60.614 45.833 0.00 0.00 0.00 3.77
3171 3535 3.502211 CGTAGGAAGAAATGTTGCAGGTT 59.498 43.478 0.00 0.00 0.00 3.50
3172 3536 3.074412 CGTAGGAAGAAATGTTGCAGGT 58.926 45.455 0.00 0.00 0.00 4.00
3173 3537 3.747099 CGTAGGAAGAAATGTTGCAGG 57.253 47.619 0.00 0.00 0.00 4.85
3189 3553 4.069304 TGGAAAACTCATTTGGTCCGTAG 58.931 43.478 0.00 0.00 30.16 3.51
3190 3554 4.069304 CTGGAAAACTCATTTGGTCCGTA 58.931 43.478 0.00 0.00 30.16 4.02
3191 3555 2.884639 CTGGAAAACTCATTTGGTCCGT 59.115 45.455 0.00 0.00 30.16 4.69
3192 3556 2.884639 ACTGGAAAACTCATTTGGTCCG 59.115 45.455 0.00 0.00 30.16 4.79
3193 3557 4.340950 TCAACTGGAAAACTCATTTGGTCC 59.659 41.667 0.00 0.00 0.00 4.46
3194 3558 5.507985 CCTCAACTGGAAAACTCATTTGGTC 60.508 44.000 0.00 0.00 0.00 4.02
3195 3559 4.342092 CCTCAACTGGAAAACTCATTTGGT 59.658 41.667 0.00 0.00 0.00 3.67
3196 3560 4.342092 ACCTCAACTGGAAAACTCATTTGG 59.658 41.667 0.00 0.00 0.00 3.28
3197 3561 5.520376 ACCTCAACTGGAAAACTCATTTG 57.480 39.130 0.00 0.00 0.00 2.32
3198 3562 5.682212 GCAACCTCAACTGGAAAACTCATTT 60.682 40.000 0.00 0.00 0.00 2.32
3199 3563 4.202151 GCAACCTCAACTGGAAAACTCATT 60.202 41.667 0.00 0.00 0.00 2.57
3200 3564 3.319122 GCAACCTCAACTGGAAAACTCAT 59.681 43.478 0.00 0.00 0.00 2.90
3201 3565 2.687935 GCAACCTCAACTGGAAAACTCA 59.312 45.455 0.00 0.00 0.00 3.41
3202 3566 2.952310 AGCAACCTCAACTGGAAAACTC 59.048 45.455 0.00 0.00 0.00 3.01
3203 3567 2.689983 CAGCAACCTCAACTGGAAAACT 59.310 45.455 0.00 0.00 0.00 2.66
3204 3568 3.084070 CAGCAACCTCAACTGGAAAAC 57.916 47.619 0.00 0.00 0.00 2.43
3210 3574 1.538512 CACATCCAGCAACCTCAACTG 59.461 52.381 0.00 0.00 0.00 3.16
3211 3575 1.901591 CACATCCAGCAACCTCAACT 58.098 50.000 0.00 0.00 0.00 3.16
3212 3576 0.242017 GCACATCCAGCAACCTCAAC 59.758 55.000 0.00 0.00 0.00 3.18
3213 3577 0.178995 TGCACATCCAGCAACCTCAA 60.179 50.000 0.00 0.00 39.39 3.02
3214 3578 0.178995 TTGCACATCCAGCAACCTCA 60.179 50.000 0.00 0.00 46.13 3.86
3215 3579 2.644887 TTGCACATCCAGCAACCTC 58.355 52.632 0.00 0.00 46.13 3.85
3216 3580 4.927557 TTGCACATCCAGCAACCT 57.072 50.000 0.00 0.00 46.13 3.50
3220 3584 2.918345 GCGGTTTGCACATCCAGCA 61.918 57.895 0.00 0.00 45.45 4.41
3221 3585 2.126346 GCGGTTTGCACATCCAGC 60.126 61.111 0.00 0.00 45.45 4.85
3222 3586 2.176546 CGCGGTTTGCACATCCAG 59.823 61.111 0.00 0.00 46.97 3.86
3223 3587 4.036804 GCGCGGTTTGCACATCCA 62.037 61.111 8.83 0.00 46.97 3.41
3224 3588 3.951655 CTGCGCGGTTTGCACATCC 62.952 63.158 8.83 0.00 46.97 3.51
3225 3589 2.502510 CTGCGCGGTTTGCACATC 60.503 61.111 8.83 0.00 46.97 3.06
3226 3590 4.041917 CCTGCGCGGTTTGCACAT 62.042 61.111 16.49 0.00 46.97 3.21
3237 3601 4.740822 ATCCACCCCAACCTGCGC 62.741 66.667 0.00 0.00 0.00 6.09
3238 3602 2.751436 CATCCACCCCAACCTGCG 60.751 66.667 0.00 0.00 0.00 5.18
3239 3603 1.978617 CACATCCACCCCAACCTGC 60.979 63.158 0.00 0.00 0.00 4.85
3240 3604 1.978617 GCACATCCACCCCAACCTG 60.979 63.158 0.00 0.00 0.00 4.00
3241 3605 2.142292 GAGCACATCCACCCCAACCT 62.142 60.000 0.00 0.00 0.00 3.50
3242 3606 1.678970 GAGCACATCCACCCCAACC 60.679 63.158 0.00 0.00 0.00 3.77
3243 3607 0.678048 GAGAGCACATCCACCCCAAC 60.678 60.000 0.00 0.00 0.00 3.77
3244 3608 0.842030 AGAGAGCACATCCACCCCAA 60.842 55.000 0.00 0.00 0.00 4.12
3245 3609 0.842030 AAGAGAGCACATCCACCCCA 60.842 55.000 0.00 0.00 0.00 4.96
3246 3610 0.329596 AAAGAGAGCACATCCACCCC 59.670 55.000 0.00 0.00 0.00 4.95
3247 3611 2.420687 CCTAAAGAGAGCACATCCACCC 60.421 54.545 0.00 0.00 0.00 4.61
3248 3612 2.911484 CCTAAAGAGAGCACATCCACC 58.089 52.381 0.00 0.00 0.00 4.61
3249 3613 2.284190 GCCTAAAGAGAGCACATCCAC 58.716 52.381 0.00 0.00 0.00 4.02
3250 3614 1.908619 TGCCTAAAGAGAGCACATCCA 59.091 47.619 0.00 0.00 0.00 3.41
3251 3615 2.698855 TGCCTAAAGAGAGCACATCC 57.301 50.000 0.00 0.00 0.00 3.51
3256 3620 1.908619 TGGATGTGCCTAAAGAGAGCA 59.091 47.619 0.00 0.00 37.63 4.26
3257 3621 2.698855 TGGATGTGCCTAAAGAGAGC 57.301 50.000 0.00 0.00 37.63 4.09
3258 3622 5.674525 TGTTATGGATGTGCCTAAAGAGAG 58.325 41.667 0.00 0.00 37.63 3.20
3259 3623 5.692115 TGTTATGGATGTGCCTAAAGAGA 57.308 39.130 0.00 0.00 37.63 3.10
3260 3624 6.115446 TCTTGTTATGGATGTGCCTAAAGAG 58.885 40.000 0.00 0.00 37.63 2.85
3261 3625 6.061022 TCTTGTTATGGATGTGCCTAAAGA 57.939 37.500 0.00 0.00 37.63 2.52
3262 3626 6.732154 CATCTTGTTATGGATGTGCCTAAAG 58.268 40.000 0.00 0.00 35.82 1.85
3263 3627 6.698008 CATCTTGTTATGGATGTGCCTAAA 57.302 37.500 0.00 0.00 35.82 1.85
3274 3638 3.941483 GTCCACCTGACATCTTGTTATGG 59.059 47.826 0.00 0.00 43.85 2.74
3456 3823 7.953158 TTATACTGTGCTAAAGAGATCATGC 57.047 36.000 0.00 0.00 0.00 4.06
3479 3846 5.238650 CACTAGTTGTTTGGATTCGGACTTT 59.761 40.000 0.00 0.00 0.00 2.66
3536 3911 1.570979 CCTCTCTTTGGGCCCCTATTT 59.429 52.381 22.27 0.00 0.00 1.40
3627 4002 3.767673 AGGAGATAGCAACCGTGTCTTTA 59.232 43.478 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.