Multiple sequence alignment - TraesCS7A01G215000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G215000 chr7A 100.000 2716 0 0 1 2716 180645447 180648162 0.000000e+00 5016
1 TraesCS7A01G215000 chr7D 92.672 2156 95 29 593 2714 177103497 177105623 0.000000e+00 3048
2 TraesCS7A01G215000 chr7B 90.436 826 46 17 987 1810 143321668 143322462 0.000000e+00 1057
3 TraesCS7A01G215000 chr7B 93.613 501 23 6 2218 2716 143322820 143323313 0.000000e+00 739
4 TraesCS7A01G215000 chr7B 86.639 479 27 12 484 959 143321227 143321671 1.880000e-136 496
5 TraesCS7A01G215000 chr5A 85.866 283 29 4 168 439 592305481 592305199 9.510000e-75 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G215000 chr7A 180645447 180648162 2715 False 5016 5016 100.000000 1 2716 1 chr7A.!!$F1 2715
1 TraesCS7A01G215000 chr7D 177103497 177105623 2126 False 3048 3048 92.672000 593 2714 1 chr7D.!!$F1 2121
2 TraesCS7A01G215000 chr7B 143321227 143323313 2086 False 764 1057 90.229333 484 2716 3 chr7B.!!$F1 2232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.036010 CGTGAGGGAGGCTGTTGATT 60.036 55.0 0.00 0.00 0.00 2.57 F
902 916 0.096281 GACAGAGCTCACGAGAGACG 59.904 60.0 17.77 0.88 44.98 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1268 0.162294 CGAACGAACGTTAGCCCAAC 59.838 55.0 12.42 0.0 38.6 3.77 R
2669 2776 0.108851 CCCAAAATAACAGCACGGCC 60.109 55.0 0.00 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.834749 AAGAAGAGATAGAGTTTGTTACAACC 57.165 34.615 0.00 0.00 0.00 3.77
36 37 7.091443 AGAAGAGATAGAGTTTGTTACAACCG 58.909 38.462 0.00 0.00 0.00 4.44
37 38 6.585695 AGAGATAGAGTTTGTTACAACCGA 57.414 37.500 0.00 0.00 0.00 4.69
38 39 6.388278 AGAGATAGAGTTTGTTACAACCGAC 58.612 40.000 0.00 0.00 0.00 4.79
39 40 5.476614 AGATAGAGTTTGTTACAACCGACC 58.523 41.667 0.00 0.00 0.00 4.79
40 41 2.842457 AGAGTTTGTTACAACCGACCC 58.158 47.619 0.00 0.00 0.00 4.46
41 42 1.875514 GAGTTTGTTACAACCGACCCC 59.124 52.381 0.00 0.00 0.00 4.95
42 43 1.212441 AGTTTGTTACAACCGACCCCA 59.788 47.619 0.00 0.00 0.00 4.96
43 44 2.022934 GTTTGTTACAACCGACCCCAA 58.977 47.619 0.00 0.00 0.00 4.12
44 45 2.624364 GTTTGTTACAACCGACCCCAAT 59.376 45.455 0.00 0.00 0.00 3.16
45 46 3.784511 TTGTTACAACCGACCCCAATA 57.215 42.857 0.00 0.00 0.00 1.90
46 47 3.056588 TGTTACAACCGACCCCAATAC 57.943 47.619 0.00 0.00 0.00 1.89
47 48 2.001872 GTTACAACCGACCCCAATACG 58.998 52.381 0.00 0.00 0.00 3.06
48 49 1.554836 TACAACCGACCCCAATACGA 58.445 50.000 0.00 0.00 0.00 3.43
49 50 0.037046 ACAACCGACCCCAATACGAC 60.037 55.000 0.00 0.00 0.00 4.34
50 51 0.037139 CAACCGACCCCAATACGACA 60.037 55.000 0.00 0.00 0.00 4.35
51 52 0.906775 AACCGACCCCAATACGACAT 59.093 50.000 0.00 0.00 0.00 3.06
52 53 1.779221 ACCGACCCCAATACGACATA 58.221 50.000 0.00 0.00 0.00 2.29
53 54 2.109774 ACCGACCCCAATACGACATAA 58.890 47.619 0.00 0.00 0.00 1.90
54 55 2.500910 ACCGACCCCAATACGACATAAA 59.499 45.455 0.00 0.00 0.00 1.40
55 56 3.055240 ACCGACCCCAATACGACATAAAA 60.055 43.478 0.00 0.00 0.00 1.52
56 57 3.558418 CCGACCCCAATACGACATAAAAG 59.442 47.826 0.00 0.00 0.00 2.27
57 58 4.435425 CGACCCCAATACGACATAAAAGA 58.565 43.478 0.00 0.00 0.00 2.52
58 59 5.054477 CGACCCCAATACGACATAAAAGAT 58.946 41.667 0.00 0.00 0.00 2.40
59 60 5.526111 CGACCCCAATACGACATAAAAGATT 59.474 40.000 0.00 0.00 0.00 2.40
60 61 6.702723 CGACCCCAATACGACATAAAAGATTA 59.297 38.462 0.00 0.00 0.00 1.75
61 62 7.306983 CGACCCCAATACGACATAAAAGATTAC 60.307 40.741 0.00 0.00 0.00 1.89
62 63 7.571025 ACCCCAATACGACATAAAAGATTACT 58.429 34.615 0.00 0.00 0.00 2.24
63 64 7.713942 ACCCCAATACGACATAAAAGATTACTC 59.286 37.037 0.00 0.00 0.00 2.59
64 65 7.931948 CCCCAATACGACATAAAAGATTACTCT 59.068 37.037 0.00 0.00 0.00 3.24
65 66 9.326413 CCCAATACGACATAAAAGATTACTCTT 57.674 33.333 0.00 0.00 43.71 2.85
70 71 8.842358 ACGACATAAAAGATTACTCTTCCAAA 57.158 30.769 0.00 0.00 40.93 3.28
71 72 9.280174 ACGACATAAAAGATTACTCTTCCAAAA 57.720 29.630 0.00 0.00 40.93 2.44
80 81 9.807921 AAGATTACTCTTCCAAAATAAGAACCA 57.192 29.630 0.00 0.00 37.09 3.67
81 82 9.232473 AGATTACTCTTCCAAAATAAGAACCAC 57.768 33.333 0.00 0.00 32.77 4.16
82 83 7.754851 TTACTCTTCCAAAATAAGAACCACC 57.245 36.000 0.00 0.00 32.77 4.61
83 84 5.701224 ACTCTTCCAAAATAAGAACCACCA 58.299 37.500 0.00 0.00 32.77 4.17
84 85 6.133356 ACTCTTCCAAAATAAGAACCACCAA 58.867 36.000 0.00 0.00 32.77 3.67
85 86 6.265422 ACTCTTCCAAAATAAGAACCACCAAG 59.735 38.462 0.00 0.00 32.77 3.61
86 87 4.864704 TCCAAAATAAGAACCACCAAGC 57.135 40.909 0.00 0.00 0.00 4.01
87 88 4.479158 TCCAAAATAAGAACCACCAAGCT 58.521 39.130 0.00 0.00 0.00 3.74
88 89 4.898861 TCCAAAATAAGAACCACCAAGCTT 59.101 37.500 0.00 0.00 0.00 3.74
89 90 5.365314 TCCAAAATAAGAACCACCAAGCTTT 59.635 36.000 0.00 0.00 0.00 3.51
90 91 6.054941 CCAAAATAAGAACCACCAAGCTTTT 58.945 36.000 0.00 0.00 0.00 2.27
91 92 6.542005 CCAAAATAAGAACCACCAAGCTTTTT 59.458 34.615 0.00 0.00 0.00 1.94
92 93 7.408910 CAAAATAAGAACCACCAAGCTTTTTG 58.591 34.615 0.00 0.00 0.00 2.44
93 94 3.541996 AAGAACCACCAAGCTTTTTGG 57.458 42.857 18.05 18.05 44.91 3.28
94 95 1.138859 AGAACCACCAAGCTTTTTGGC 59.861 47.619 19.15 7.52 43.23 4.52
95 96 0.908198 AACCACCAAGCTTTTTGGCA 59.092 45.000 19.15 0.00 43.23 4.92
96 97 0.177836 ACCACCAAGCTTTTTGGCAC 59.822 50.000 19.15 0.00 43.23 5.01
97 98 0.532640 CCACCAAGCTTTTTGGCACC 60.533 55.000 9.66 0.00 43.23 5.01
98 99 0.532640 CACCAAGCTTTTTGGCACCC 60.533 55.000 0.00 0.00 43.23 4.61
99 100 1.300853 CCAAGCTTTTTGGCACCCG 60.301 57.895 0.00 0.00 32.18 5.28
100 101 1.955663 CAAGCTTTTTGGCACCCGC 60.956 57.895 0.00 0.00 37.44 6.13
101 102 3.498401 AAGCTTTTTGGCACCCGCG 62.498 57.895 0.00 0.00 39.92 6.46
103 104 3.601685 CTTTTTGGCACCCGCGGT 61.602 61.111 26.12 9.63 39.92 5.68
104 105 3.551887 CTTTTTGGCACCCGCGGTC 62.552 63.158 26.12 12.58 39.92 4.79
105 106 4.877619 TTTTGGCACCCGCGGTCA 62.878 61.111 26.12 13.71 39.92 4.02
111 112 4.939368 CACCCGCGGTCACCCAAA 62.939 66.667 26.12 0.00 31.02 3.28
112 113 4.636435 ACCCGCGGTCACCCAAAG 62.636 66.667 26.12 7.62 0.00 2.77
116 117 2.597510 GCGGTCACCCAAAGCCTT 60.598 61.111 0.00 0.00 0.00 4.35
117 118 2.626780 GCGGTCACCCAAAGCCTTC 61.627 63.158 0.00 0.00 0.00 3.46
118 119 1.971695 CGGTCACCCAAAGCCTTCC 60.972 63.158 0.00 0.00 0.00 3.46
119 120 1.606601 GGTCACCCAAAGCCTTCCC 60.607 63.158 0.00 0.00 0.00 3.97
120 121 1.460699 GTCACCCAAAGCCTTCCCT 59.539 57.895 0.00 0.00 0.00 4.20
121 122 0.609406 GTCACCCAAAGCCTTCCCTC 60.609 60.000 0.00 0.00 0.00 4.30
122 123 1.065410 TCACCCAAAGCCTTCCCTCA 61.065 55.000 0.00 0.00 0.00 3.86
123 124 0.040204 CACCCAAAGCCTTCCCTCAT 59.960 55.000 0.00 0.00 0.00 2.90
124 125 0.332972 ACCCAAAGCCTTCCCTCATC 59.667 55.000 0.00 0.00 0.00 2.92
125 126 0.396278 CCCAAAGCCTTCCCTCATCC 60.396 60.000 0.00 0.00 0.00 3.51
126 127 0.627986 CCAAAGCCTTCCCTCATCCT 59.372 55.000 0.00 0.00 0.00 3.24
127 128 1.006400 CCAAAGCCTTCCCTCATCCTT 59.994 52.381 0.00 0.00 0.00 3.36
128 129 2.097825 CAAAGCCTTCCCTCATCCTTG 58.902 52.381 0.00 0.00 0.00 3.61
129 130 1.673767 AAGCCTTCCCTCATCCTTGA 58.326 50.000 0.00 0.00 0.00 3.02
130 131 1.904440 AGCCTTCCCTCATCCTTGAT 58.096 50.000 0.00 0.00 0.00 2.57
131 132 1.493871 AGCCTTCCCTCATCCTTGATG 59.506 52.381 0.00 0.00 41.00 3.07
132 133 1.492176 GCCTTCCCTCATCCTTGATGA 59.508 52.381 6.60 6.60 45.35 2.92
140 141 3.272574 TCATCCTTGATGAGGTTGAGC 57.727 47.619 2.73 0.00 45.23 4.26
141 142 2.573009 TCATCCTTGATGAGGTTGAGCA 59.427 45.455 2.73 0.00 45.23 4.26
142 143 3.009363 TCATCCTTGATGAGGTTGAGCAA 59.991 43.478 2.73 0.00 45.23 3.91
143 144 3.063510 TCCTTGATGAGGTTGAGCAAG 57.936 47.619 0.00 0.00 46.39 4.01
144 145 2.639347 TCCTTGATGAGGTTGAGCAAGA 59.361 45.455 0.00 0.00 46.39 3.02
145 146 3.265221 TCCTTGATGAGGTTGAGCAAGAT 59.735 43.478 0.00 0.00 46.39 2.40
146 147 4.015084 CCTTGATGAGGTTGAGCAAGATT 58.985 43.478 0.00 0.00 38.80 2.40
147 148 5.045651 TCCTTGATGAGGTTGAGCAAGATTA 60.046 40.000 0.00 0.00 46.39 1.75
148 149 5.826737 CCTTGATGAGGTTGAGCAAGATTAT 59.173 40.000 0.00 0.00 38.80 1.28
149 150 6.017275 CCTTGATGAGGTTGAGCAAGATTATC 60.017 42.308 0.00 0.00 38.80 1.75
150 151 5.052481 TGATGAGGTTGAGCAAGATTATCG 58.948 41.667 0.00 0.00 0.00 2.92
151 152 3.797039 TGAGGTTGAGCAAGATTATCGG 58.203 45.455 0.00 0.00 0.00 4.18
152 153 3.450817 TGAGGTTGAGCAAGATTATCGGA 59.549 43.478 0.00 0.00 0.00 4.55
153 154 4.054671 GAGGTTGAGCAAGATTATCGGAG 58.945 47.826 0.00 0.00 0.00 4.63
154 155 3.134458 GGTTGAGCAAGATTATCGGAGG 58.866 50.000 0.00 0.00 0.00 4.30
155 156 3.181465 GGTTGAGCAAGATTATCGGAGGA 60.181 47.826 0.00 0.00 0.00 3.71
156 157 4.054671 GTTGAGCAAGATTATCGGAGGAG 58.945 47.826 0.00 0.00 0.00 3.69
157 158 2.036475 TGAGCAAGATTATCGGAGGAGC 59.964 50.000 0.00 0.00 0.00 4.70
158 159 1.000283 AGCAAGATTATCGGAGGAGCG 60.000 52.381 0.00 0.00 0.00 5.03
159 160 1.423395 CAAGATTATCGGAGGAGCGC 58.577 55.000 0.00 0.00 0.00 5.92
160 161 1.000283 CAAGATTATCGGAGGAGCGCT 60.000 52.381 11.27 11.27 0.00 5.92
161 162 1.333177 AGATTATCGGAGGAGCGCTT 58.667 50.000 13.26 0.00 0.00 4.68
162 163 1.689273 AGATTATCGGAGGAGCGCTTT 59.311 47.619 13.26 2.43 0.00 3.51
163 164 2.103263 AGATTATCGGAGGAGCGCTTTT 59.897 45.455 13.26 1.97 0.00 2.27
164 165 1.651987 TTATCGGAGGAGCGCTTTTG 58.348 50.000 13.26 0.00 0.00 2.44
165 166 0.535335 TATCGGAGGAGCGCTTTTGT 59.465 50.000 13.26 0.00 0.00 2.83
166 167 1.021390 ATCGGAGGAGCGCTTTTGTG 61.021 55.000 13.26 2.00 0.00 3.33
167 168 1.667830 CGGAGGAGCGCTTTTGTGA 60.668 57.895 13.26 0.00 0.00 3.58
168 169 1.869690 GGAGGAGCGCTTTTGTGAC 59.130 57.895 13.26 0.00 0.00 3.67
169 170 1.493311 GAGGAGCGCTTTTGTGACG 59.507 57.895 13.26 0.00 0.00 4.35
170 171 1.901650 GAGGAGCGCTTTTGTGACGG 61.902 60.000 13.26 0.00 0.00 4.79
171 172 1.959226 GGAGCGCTTTTGTGACGGA 60.959 57.895 13.26 0.00 0.00 4.69
172 173 1.503818 GGAGCGCTTTTGTGACGGAA 61.504 55.000 13.26 0.00 0.00 4.30
173 174 0.110644 GAGCGCTTTTGTGACGGAAG 60.111 55.000 13.26 0.00 0.00 3.46
174 175 0.531974 AGCGCTTTTGTGACGGAAGA 60.532 50.000 2.64 0.00 0.00 2.87
175 176 0.384353 GCGCTTTTGTGACGGAAGAC 60.384 55.000 0.00 0.00 0.00 3.01
176 177 0.234884 CGCTTTTGTGACGGAAGACC 59.765 55.000 2.50 0.00 0.00 3.85
177 178 1.594331 GCTTTTGTGACGGAAGACCT 58.406 50.000 2.50 0.00 0.00 3.85
178 179 1.947456 GCTTTTGTGACGGAAGACCTT 59.053 47.619 2.50 0.00 0.00 3.50
179 180 3.135994 GCTTTTGTGACGGAAGACCTTA 58.864 45.455 2.50 0.00 0.00 2.69
180 181 3.186613 GCTTTTGTGACGGAAGACCTTAG 59.813 47.826 2.50 0.00 0.00 2.18
181 182 2.450609 TTGTGACGGAAGACCTTAGC 57.549 50.000 0.00 0.00 0.00 3.09
182 183 1.334160 TGTGACGGAAGACCTTAGCA 58.666 50.000 0.00 0.00 0.00 3.49
183 184 1.899814 TGTGACGGAAGACCTTAGCAT 59.100 47.619 0.00 0.00 0.00 3.79
184 185 2.301870 TGTGACGGAAGACCTTAGCATT 59.698 45.455 0.00 0.00 0.00 3.56
185 186 2.673368 GTGACGGAAGACCTTAGCATTG 59.327 50.000 0.00 0.00 0.00 2.82
186 187 1.666189 GACGGAAGACCTTAGCATTGC 59.334 52.381 0.00 0.00 0.00 3.56
187 188 0.652592 CGGAAGACCTTAGCATTGCG 59.347 55.000 2.38 0.00 0.00 4.85
188 189 0.378610 GGAAGACCTTAGCATTGCGC 59.621 55.000 0.00 0.00 42.91 6.09
197 198 2.560861 GCATTGCGCTCGTTCCAA 59.439 55.556 9.73 0.00 37.77 3.53
198 199 1.081509 GCATTGCGCTCGTTCCAAA 60.082 52.632 9.73 0.00 37.77 3.28
199 200 0.456653 GCATTGCGCTCGTTCCAAAT 60.457 50.000 9.73 0.00 37.77 2.32
200 201 1.981254 CATTGCGCTCGTTCCAAATT 58.019 45.000 9.73 0.00 0.00 1.82
201 202 1.650153 CATTGCGCTCGTTCCAAATTG 59.350 47.619 9.73 0.00 0.00 2.32
202 203 0.662970 TTGCGCTCGTTCCAAATTGC 60.663 50.000 9.73 0.00 0.00 3.56
203 204 1.801512 GCGCTCGTTCCAAATTGCC 60.802 57.895 0.00 0.00 0.00 4.52
204 205 1.154035 CGCTCGTTCCAAATTGCCC 60.154 57.895 0.00 0.00 0.00 5.36
205 206 1.861542 CGCTCGTTCCAAATTGCCCA 61.862 55.000 0.00 0.00 0.00 5.36
206 207 0.316841 GCTCGTTCCAAATTGCCCAA 59.683 50.000 0.00 0.00 0.00 4.12
207 208 1.669795 GCTCGTTCCAAATTGCCCAAG 60.670 52.381 0.00 0.00 0.00 3.61
208 209 1.613437 CTCGTTCCAAATTGCCCAAGT 59.387 47.619 0.00 0.00 0.00 3.16
209 210 1.339610 TCGTTCCAAATTGCCCAAGTG 59.660 47.619 0.00 0.00 0.00 3.16
210 211 1.339610 CGTTCCAAATTGCCCAAGTGA 59.660 47.619 0.00 0.00 0.00 3.41
211 212 2.754472 GTTCCAAATTGCCCAAGTGAC 58.246 47.619 0.00 0.00 0.00 3.67
212 213 2.079170 TCCAAATTGCCCAAGTGACA 57.921 45.000 0.00 0.00 0.00 3.58
213 214 2.392662 TCCAAATTGCCCAAGTGACAA 58.607 42.857 0.00 0.00 0.00 3.18
214 215 2.364970 TCCAAATTGCCCAAGTGACAAG 59.635 45.455 0.00 0.00 0.00 3.16
215 216 2.137523 CAAATTGCCCAAGTGACAAGC 58.862 47.619 0.00 0.00 0.00 4.01
216 217 1.412079 AATTGCCCAAGTGACAAGCA 58.588 45.000 0.00 0.00 0.00 3.91
217 218 1.636148 ATTGCCCAAGTGACAAGCAT 58.364 45.000 0.00 0.00 32.67 3.79
218 219 0.961019 TTGCCCAAGTGACAAGCATC 59.039 50.000 0.00 0.00 32.67 3.91
219 220 1.236616 TGCCCAAGTGACAAGCATCG 61.237 55.000 0.00 0.00 0.00 3.84
220 221 1.237285 GCCCAAGTGACAAGCATCGT 61.237 55.000 0.00 0.00 0.00 3.73
221 222 0.518636 CCCAAGTGACAAGCATCGTG 59.481 55.000 0.00 0.00 0.00 4.35
222 223 1.511850 CCAAGTGACAAGCATCGTGA 58.488 50.000 0.00 0.00 0.00 4.35
223 224 1.462283 CCAAGTGACAAGCATCGTGAG 59.538 52.381 0.00 0.00 0.00 3.51
224 225 1.462283 CAAGTGACAAGCATCGTGAGG 59.538 52.381 0.00 0.00 0.00 3.86
225 226 0.036952 AGTGACAAGCATCGTGAGGG 60.037 55.000 0.00 0.00 0.00 4.30
226 227 0.037326 GTGACAAGCATCGTGAGGGA 60.037 55.000 0.00 0.00 0.00 4.20
227 228 0.247460 TGACAAGCATCGTGAGGGAG 59.753 55.000 0.00 0.00 0.00 4.30
228 229 0.460987 GACAAGCATCGTGAGGGAGG 60.461 60.000 0.00 0.00 0.00 4.30
229 230 1.817099 CAAGCATCGTGAGGGAGGC 60.817 63.158 0.00 0.00 43.61 4.70
231 232 2.202987 GCATCGTGAGGGAGGCTG 60.203 66.667 0.00 0.00 40.36 4.85
232 233 3.023949 GCATCGTGAGGGAGGCTGT 62.024 63.158 0.00 0.00 40.36 4.40
233 234 1.599047 CATCGTGAGGGAGGCTGTT 59.401 57.895 0.00 0.00 0.00 3.16
234 235 0.742281 CATCGTGAGGGAGGCTGTTG 60.742 60.000 0.00 0.00 0.00 3.33
235 236 0.904865 ATCGTGAGGGAGGCTGTTGA 60.905 55.000 0.00 0.00 0.00 3.18
236 237 0.904865 TCGTGAGGGAGGCTGTTGAT 60.905 55.000 0.00 0.00 0.00 2.57
237 238 0.036010 CGTGAGGGAGGCTGTTGATT 60.036 55.000 0.00 0.00 0.00 2.57
238 239 1.611673 CGTGAGGGAGGCTGTTGATTT 60.612 52.381 0.00 0.00 0.00 2.17
239 240 2.519013 GTGAGGGAGGCTGTTGATTTT 58.481 47.619 0.00 0.00 0.00 1.82
240 241 2.489722 GTGAGGGAGGCTGTTGATTTTC 59.510 50.000 0.00 0.00 0.00 2.29
241 242 2.376518 TGAGGGAGGCTGTTGATTTTCT 59.623 45.455 0.00 0.00 0.00 2.52
242 243 3.587061 TGAGGGAGGCTGTTGATTTTCTA 59.413 43.478 0.00 0.00 0.00 2.10
243 244 4.228210 TGAGGGAGGCTGTTGATTTTCTAT 59.772 41.667 0.00 0.00 0.00 1.98
244 245 5.196695 GAGGGAGGCTGTTGATTTTCTATT 58.803 41.667 0.00 0.00 0.00 1.73
245 246 5.196695 AGGGAGGCTGTTGATTTTCTATTC 58.803 41.667 0.00 0.00 0.00 1.75
246 247 4.035675 GGGAGGCTGTTGATTTTCTATTCG 59.964 45.833 0.00 0.00 0.00 3.34
247 248 4.035675 GGAGGCTGTTGATTTTCTATTCGG 59.964 45.833 0.00 0.00 0.00 4.30
248 249 3.378427 AGGCTGTTGATTTTCTATTCGGC 59.622 43.478 0.00 0.00 0.00 5.54
249 250 3.128589 GGCTGTTGATTTTCTATTCGGCA 59.871 43.478 0.00 0.00 0.00 5.69
250 251 4.380444 GGCTGTTGATTTTCTATTCGGCAA 60.380 41.667 0.00 0.00 0.00 4.52
251 252 4.795278 GCTGTTGATTTTCTATTCGGCAAG 59.205 41.667 0.00 0.00 0.00 4.01
252 253 4.732784 TGTTGATTTTCTATTCGGCAAGC 58.267 39.130 0.00 0.00 0.00 4.01
253 254 4.458989 TGTTGATTTTCTATTCGGCAAGCT 59.541 37.500 0.00 0.00 0.00 3.74
254 255 5.645929 TGTTGATTTTCTATTCGGCAAGCTA 59.354 36.000 0.00 0.00 0.00 3.32
255 256 6.318648 TGTTGATTTTCTATTCGGCAAGCTAT 59.681 34.615 0.00 0.00 0.00 2.97
256 257 6.545504 TGATTTTCTATTCGGCAAGCTATC 57.454 37.500 0.00 0.00 0.00 2.08
257 258 6.054941 TGATTTTCTATTCGGCAAGCTATCA 58.945 36.000 0.00 0.00 0.00 2.15
258 259 5.734855 TTTTCTATTCGGCAAGCTATCAC 57.265 39.130 0.00 0.00 0.00 3.06
259 260 3.386768 TCTATTCGGCAAGCTATCACC 57.613 47.619 0.00 0.00 0.00 4.02
260 261 2.061773 CTATTCGGCAAGCTATCACCG 58.938 52.381 9.62 9.62 46.97 4.94
261 262 0.532862 ATTCGGCAAGCTATCACCGG 60.533 55.000 14.32 0.00 45.65 5.28
262 263 3.272334 CGGCAAGCTATCACCGGC 61.272 66.667 0.00 0.00 41.95 6.13
263 264 2.902343 GGCAAGCTATCACCGGCC 60.902 66.667 0.00 0.00 0.00 6.13
264 265 3.272334 GCAAGCTATCACCGGCCG 61.272 66.667 21.04 21.04 0.00 6.13
265 266 3.272334 CAAGCTATCACCGGCCGC 61.272 66.667 22.85 3.50 0.00 6.53
266 267 3.470888 AAGCTATCACCGGCCGCT 61.471 61.111 22.85 2.01 0.00 5.52
267 268 3.031417 AAGCTATCACCGGCCGCTT 62.031 57.895 22.85 13.13 36.22 4.68
268 269 1.682451 AAGCTATCACCGGCCGCTTA 61.682 55.000 22.85 6.84 38.98 3.09
269 270 1.954651 GCTATCACCGGCCGCTTAC 60.955 63.158 22.85 0.19 0.00 2.34
270 271 1.740285 CTATCACCGGCCGCTTACT 59.260 57.895 22.85 5.08 0.00 2.24
271 272 0.318784 CTATCACCGGCCGCTTACTC 60.319 60.000 22.85 0.00 0.00 2.59
272 273 1.741327 TATCACCGGCCGCTTACTCC 61.741 60.000 22.85 0.00 0.00 3.85
273 274 4.077184 CACCGGCCGCTTACTCCA 62.077 66.667 22.85 0.00 0.00 3.86
274 275 4.078516 ACCGGCCGCTTACTCCAC 62.079 66.667 22.85 0.00 0.00 4.02
275 276 4.832608 CCGGCCGCTTACTCCACC 62.833 72.222 22.85 0.00 0.00 4.61
276 277 4.077184 CGGCCGCTTACTCCACCA 62.077 66.667 14.67 0.00 0.00 4.17
277 278 2.349755 GGCCGCTTACTCCACCAA 59.650 61.111 0.00 0.00 0.00 3.67
278 279 1.077716 GGCCGCTTACTCCACCAAT 60.078 57.895 0.00 0.00 0.00 3.16
279 280 1.095807 GGCCGCTTACTCCACCAATC 61.096 60.000 0.00 0.00 0.00 2.67
280 281 1.095807 GCCGCTTACTCCACCAATCC 61.096 60.000 0.00 0.00 0.00 3.01
281 282 0.541863 CCGCTTACTCCACCAATCCT 59.458 55.000 0.00 0.00 0.00 3.24
282 283 1.473434 CCGCTTACTCCACCAATCCTC 60.473 57.143 0.00 0.00 0.00 3.71
283 284 1.207089 CGCTTACTCCACCAATCCTCA 59.793 52.381 0.00 0.00 0.00 3.86
284 285 2.354704 CGCTTACTCCACCAATCCTCAA 60.355 50.000 0.00 0.00 0.00 3.02
285 286 3.010420 GCTTACTCCACCAATCCTCAAC 58.990 50.000 0.00 0.00 0.00 3.18
286 287 3.559171 GCTTACTCCACCAATCCTCAACA 60.559 47.826 0.00 0.00 0.00 3.33
287 288 2.867109 ACTCCACCAATCCTCAACAG 57.133 50.000 0.00 0.00 0.00 3.16
288 289 2.338809 ACTCCACCAATCCTCAACAGA 58.661 47.619 0.00 0.00 0.00 3.41
289 290 2.304180 ACTCCACCAATCCTCAACAGAG 59.696 50.000 0.00 0.00 0.00 3.35
290 291 2.304180 CTCCACCAATCCTCAACAGAGT 59.696 50.000 0.00 0.00 0.00 3.24
291 292 2.711009 TCCACCAATCCTCAACAGAGTT 59.289 45.455 0.00 0.00 0.00 3.01
292 293 2.816087 CCACCAATCCTCAACAGAGTTG 59.184 50.000 3.58 3.58 0.00 3.16
293 294 3.480470 CACCAATCCTCAACAGAGTTGT 58.520 45.455 9.43 0.00 39.87 3.32
294 295 3.499918 CACCAATCCTCAACAGAGTTGTC 59.500 47.826 9.43 0.00 36.23 3.18
295 296 3.077359 CCAATCCTCAACAGAGTTGTCC 58.923 50.000 9.43 0.00 36.23 4.02
296 297 3.496692 CCAATCCTCAACAGAGTTGTCCA 60.497 47.826 9.43 0.00 36.23 4.02
297 298 4.136796 CAATCCTCAACAGAGTTGTCCAA 58.863 43.478 9.43 0.00 36.23 3.53
298 299 3.924114 TCCTCAACAGAGTTGTCCAAA 57.076 42.857 9.43 0.00 36.23 3.28
299 300 4.437682 TCCTCAACAGAGTTGTCCAAAT 57.562 40.909 9.43 0.00 36.23 2.32
300 301 4.136796 TCCTCAACAGAGTTGTCCAAATG 58.863 43.478 9.43 0.00 36.23 2.32
301 302 3.304928 CCTCAACAGAGTTGTCCAAATGC 60.305 47.826 9.43 0.00 36.23 3.56
302 303 2.622942 TCAACAGAGTTGTCCAAATGCC 59.377 45.455 9.43 0.00 36.23 4.40
303 304 2.361757 CAACAGAGTTGTCCAAATGCCA 59.638 45.455 1.86 0.00 36.23 4.92
304 305 2.665165 ACAGAGTTGTCCAAATGCCAA 58.335 42.857 0.00 0.00 29.46 4.52
305 306 2.624838 ACAGAGTTGTCCAAATGCCAAG 59.375 45.455 0.00 0.00 29.46 3.61
306 307 2.029649 CAGAGTTGTCCAAATGCCAAGG 60.030 50.000 0.00 0.00 0.00 3.61
307 308 1.273327 GAGTTGTCCAAATGCCAAGGG 59.727 52.381 0.00 0.00 0.00 3.95
308 309 0.321346 GTTGTCCAAATGCCAAGGGG 59.679 55.000 0.00 0.00 37.18 4.79
309 310 0.835543 TTGTCCAAATGCCAAGGGGG 60.836 55.000 0.00 0.00 40.85 5.40
323 324 4.523512 GGGGGTATCGAGGAGGAG 57.476 66.667 0.00 0.00 0.00 3.69
324 325 1.228925 GGGGGTATCGAGGAGGAGG 60.229 68.421 0.00 0.00 0.00 4.30
325 326 1.909287 GGGGTATCGAGGAGGAGGC 60.909 68.421 0.00 0.00 0.00 4.70
326 327 1.152525 GGGTATCGAGGAGGAGGCA 60.153 63.158 0.00 0.00 0.00 4.75
327 328 1.465200 GGGTATCGAGGAGGAGGCAC 61.465 65.000 0.00 0.00 0.00 5.01
343 344 3.487372 AGGCACTCTTTAACCAAGTTCC 58.513 45.455 0.00 0.00 33.66 3.62
344 345 3.117663 AGGCACTCTTTAACCAAGTTCCA 60.118 43.478 0.00 0.00 33.66 3.53
345 346 3.634910 GGCACTCTTTAACCAAGTTCCAA 59.365 43.478 0.00 0.00 33.66 3.53
346 347 4.098807 GGCACTCTTTAACCAAGTTCCAAA 59.901 41.667 0.00 0.00 33.66 3.28
347 348 5.281727 GCACTCTTTAACCAAGTTCCAAAG 58.718 41.667 0.00 0.00 33.66 2.77
348 349 5.281727 CACTCTTTAACCAAGTTCCAAAGC 58.718 41.667 0.00 0.00 33.66 3.51
349 350 4.341235 ACTCTTTAACCAAGTTCCAAAGCC 59.659 41.667 0.00 0.00 33.66 4.35
350 351 4.542697 TCTTTAACCAAGTTCCAAAGCCT 58.457 39.130 0.00 0.00 33.66 4.58
351 352 4.959839 TCTTTAACCAAGTTCCAAAGCCTT 59.040 37.500 0.00 0.00 33.66 4.35
352 353 4.664150 TTAACCAAGTTCCAAAGCCTTG 57.336 40.909 0.00 0.00 36.26 3.61
353 354 2.452600 ACCAAGTTCCAAAGCCTTGA 57.547 45.000 0.00 0.00 38.23 3.02
354 355 2.310538 ACCAAGTTCCAAAGCCTTGAG 58.689 47.619 0.00 0.00 38.23 3.02
355 356 1.615392 CCAAGTTCCAAAGCCTTGAGG 59.385 52.381 0.00 0.00 38.23 3.86
356 357 2.310538 CAAGTTCCAAAGCCTTGAGGT 58.689 47.619 0.00 0.00 38.23 3.85
357 358 1.986882 AGTTCCAAAGCCTTGAGGTG 58.013 50.000 0.00 0.00 37.57 4.00
358 359 1.494721 AGTTCCAAAGCCTTGAGGTGA 59.505 47.619 0.00 0.00 37.57 4.02
359 360 2.091885 AGTTCCAAAGCCTTGAGGTGAA 60.092 45.455 0.00 0.00 37.57 3.18
360 361 2.693074 GTTCCAAAGCCTTGAGGTGAAA 59.307 45.455 0.00 0.00 37.57 2.69
361 362 2.306847 TCCAAAGCCTTGAGGTGAAAC 58.693 47.619 0.00 0.00 37.57 2.78
362 363 1.001378 CCAAAGCCTTGAGGTGAAACG 60.001 52.381 0.00 0.00 33.58 3.60
363 364 1.946768 CAAAGCCTTGAGGTGAAACGA 59.053 47.619 0.00 0.00 33.58 3.85
364 365 1.594331 AAGCCTTGAGGTGAAACGAC 58.406 50.000 0.00 0.00 38.12 4.34
365 366 0.468226 AGCCTTGAGGTGAAACGACA 59.532 50.000 0.00 0.00 38.12 4.35
366 367 1.134220 AGCCTTGAGGTGAAACGACAA 60.134 47.619 0.00 0.00 38.12 3.18
367 368 1.880027 GCCTTGAGGTGAAACGACAAT 59.120 47.619 0.00 0.00 38.12 2.71
368 369 2.293399 GCCTTGAGGTGAAACGACAATT 59.707 45.455 0.00 0.00 38.12 2.32
369 370 3.853307 GCCTTGAGGTGAAACGACAATTG 60.853 47.826 3.24 3.24 38.12 2.32
370 371 3.315191 CCTTGAGGTGAAACGACAATTGT 59.685 43.478 11.78 11.78 38.12 2.71
371 372 4.513692 CCTTGAGGTGAAACGACAATTGTA 59.486 41.667 11.95 0.00 38.12 2.41
372 373 5.334105 CCTTGAGGTGAAACGACAATTGTAG 60.334 44.000 11.95 14.32 38.12 2.74
373 374 4.951254 TGAGGTGAAACGACAATTGTAGA 58.049 39.130 23.31 0.00 38.12 2.59
374 375 4.988540 TGAGGTGAAACGACAATTGTAGAG 59.011 41.667 23.31 14.47 38.12 2.43
375 376 3.746492 AGGTGAAACGACAATTGTAGAGC 59.254 43.478 23.31 11.38 38.12 4.09
376 377 3.496884 GGTGAAACGACAATTGTAGAGCA 59.503 43.478 23.31 14.62 38.12 4.26
377 378 4.024387 GGTGAAACGACAATTGTAGAGCAA 60.024 41.667 23.31 5.49 38.74 3.91
378 379 5.140177 GTGAAACGACAATTGTAGAGCAAG 58.860 41.667 23.31 6.92 40.86 4.01
379 380 4.814234 TGAAACGACAATTGTAGAGCAAGT 59.186 37.500 23.31 7.47 40.86 3.16
385 386 1.363744 ATTGTAGAGCAAGTGAGCGC 58.636 50.000 0.00 0.00 40.86 5.92
386 387 1.008875 TTGTAGAGCAAGTGAGCGCG 61.009 55.000 0.00 0.00 39.42 6.86
387 388 2.161486 GTAGAGCAAGTGAGCGCGG 61.161 63.158 8.83 0.00 39.42 6.46
388 389 3.356639 TAGAGCAAGTGAGCGCGGG 62.357 63.158 8.83 0.00 39.42 6.13
389 390 4.742201 GAGCAAGTGAGCGCGGGA 62.742 66.667 8.83 0.00 40.15 5.14
390 391 4.087892 AGCAAGTGAGCGCGGGAT 62.088 61.111 8.83 0.00 40.15 3.85
391 392 3.127533 GCAAGTGAGCGCGGGATT 61.128 61.111 8.83 0.00 0.00 3.01
392 393 3.093278 CAAGTGAGCGCGGGATTC 58.907 61.111 8.83 0.11 0.00 2.52
393 394 1.741401 CAAGTGAGCGCGGGATTCA 60.741 57.895 8.83 3.14 0.00 2.57
394 395 1.741770 AAGTGAGCGCGGGATTCAC 60.742 57.895 21.78 21.78 41.10 3.18
395 396 3.554692 GTGAGCGCGGGATTCACG 61.555 66.667 8.83 3.36 32.81 4.35
396 397 3.754530 TGAGCGCGGGATTCACGA 61.755 61.111 13.53 0.00 0.00 4.35
397 398 2.508439 GAGCGCGGGATTCACGAA 60.508 61.111 13.53 0.00 0.00 3.85
398 399 2.799540 GAGCGCGGGATTCACGAAC 61.800 63.158 13.53 2.48 0.00 3.95
399 400 3.861263 GCGCGGGATTCACGAACC 61.861 66.667 13.53 0.00 0.00 3.62
400 401 3.192922 CGCGGGATTCACGAACCC 61.193 66.667 13.53 0.00 40.17 4.11
401 402 2.267961 GCGGGATTCACGAACCCT 59.732 61.111 13.53 0.00 41.28 4.34
402 403 1.376812 GCGGGATTCACGAACCCTT 60.377 57.895 13.53 0.00 41.28 3.95
403 404 0.958876 GCGGGATTCACGAACCCTTT 60.959 55.000 13.53 0.00 41.28 3.11
404 405 1.530323 CGGGATTCACGAACCCTTTT 58.470 50.000 0.96 0.00 41.28 2.27
405 406 1.199097 CGGGATTCACGAACCCTTTTG 59.801 52.381 0.96 0.00 41.28 2.44
406 407 1.067846 GGGATTCACGAACCCTTTTGC 60.068 52.381 0.00 0.00 40.39 3.68
407 408 1.611491 GGATTCACGAACCCTTTTGCA 59.389 47.619 0.00 0.00 0.00 4.08
408 409 2.035321 GGATTCACGAACCCTTTTGCAA 59.965 45.455 0.00 0.00 0.00 4.08
409 410 3.491792 GGATTCACGAACCCTTTTGCAAA 60.492 43.478 8.05 8.05 0.00 3.68
410 411 2.861462 TCACGAACCCTTTTGCAAAG 57.139 45.000 12.41 3.63 0.00 2.77
411 412 1.407258 TCACGAACCCTTTTGCAAAGG 59.593 47.619 14.01 14.01 37.17 3.11
416 417 3.560989 CCTTTTGCAAAGGGGGCA 58.439 55.556 28.06 5.68 40.00 5.36
417 418 1.071299 CCTTTTGCAAAGGGGGCAC 59.929 57.895 28.06 0.00 41.75 5.01
418 419 1.694133 CCTTTTGCAAAGGGGGCACA 61.694 55.000 28.06 4.24 41.75 4.57
419 420 0.179936 CTTTTGCAAAGGGGGCACAA 59.820 50.000 13.21 0.00 41.75 3.33
420 421 0.107459 TTTTGCAAAGGGGGCACAAC 60.107 50.000 12.41 0.00 41.75 3.32
421 422 1.977293 TTTGCAAAGGGGGCACAACC 61.977 55.000 8.05 0.00 41.75 3.77
432 433 2.022764 GGCACAACCCATAATTTGGC 57.977 50.000 0.00 0.00 44.97 4.52
433 434 1.406751 GGCACAACCCATAATTTGGCC 60.407 52.381 0.00 0.00 44.97 5.36
434 435 1.277557 GCACAACCCATAATTTGGCCA 59.722 47.619 0.00 0.00 44.97 5.36
435 436 2.289945 GCACAACCCATAATTTGGCCAA 60.290 45.455 16.05 16.05 44.97 4.52
436 437 3.333804 CACAACCCATAATTTGGCCAAC 58.666 45.455 20.35 0.00 44.97 3.77
437 438 2.304470 ACAACCCATAATTTGGCCAACC 59.696 45.455 20.35 0.00 44.97 3.77
438 439 2.571202 CAACCCATAATTTGGCCAACCT 59.429 45.455 20.35 10.88 44.97 3.50
439 440 2.466846 ACCCATAATTTGGCCAACCTC 58.533 47.619 20.35 0.00 44.97 3.85
440 441 1.408702 CCCATAATTTGGCCAACCTCG 59.591 52.381 20.35 5.89 44.97 4.63
441 442 1.202405 CCATAATTTGGCCAACCTCGC 60.202 52.381 20.35 0.00 39.09 5.03
442 443 1.750778 CATAATTTGGCCAACCTCGCT 59.249 47.619 20.35 1.49 36.63 4.93
443 444 1.917872 TAATTTGGCCAACCTCGCTT 58.082 45.000 20.35 7.65 36.63 4.68
444 445 0.603065 AATTTGGCCAACCTCGCTTC 59.397 50.000 20.35 0.00 36.63 3.86
445 446 0.251341 ATTTGGCCAACCTCGCTTCT 60.251 50.000 20.35 0.00 36.63 2.85
446 447 0.889186 TTTGGCCAACCTCGCTTCTC 60.889 55.000 20.35 0.00 36.63 2.87
447 448 2.436824 GGCCAACCTCGCTTCTCC 60.437 66.667 0.00 0.00 0.00 3.71
448 449 2.347490 GCCAACCTCGCTTCTCCA 59.653 61.111 0.00 0.00 0.00 3.86
449 450 1.743252 GCCAACCTCGCTTCTCCAG 60.743 63.158 0.00 0.00 0.00 3.86
450 451 1.743252 CCAACCTCGCTTCTCCAGC 60.743 63.158 0.00 0.00 46.31 4.85
457 458 2.203126 GCTTCTCCAGCCCATCCG 60.203 66.667 0.00 0.00 43.65 4.18
458 459 3.036429 GCTTCTCCAGCCCATCCGT 62.036 63.158 0.00 0.00 43.65 4.69
459 460 1.153289 CTTCTCCAGCCCATCCGTG 60.153 63.158 0.00 0.00 0.00 4.94
460 461 3.329542 TTCTCCAGCCCATCCGTGC 62.330 63.158 0.00 0.00 0.00 5.34
461 462 3.790437 CTCCAGCCCATCCGTGCT 61.790 66.667 0.00 0.00 38.67 4.40
462 463 3.746949 CTCCAGCCCATCCGTGCTC 62.747 68.421 0.00 0.00 35.12 4.26
463 464 4.864334 CCAGCCCATCCGTGCTCC 62.864 72.222 0.00 0.00 35.12 4.70
466 467 4.899239 GCCCATCCGTGCTCCGAG 62.899 72.222 0.00 0.00 39.56 4.63
467 468 3.461773 CCCATCCGTGCTCCGAGT 61.462 66.667 0.00 0.00 39.56 4.18
468 469 2.105128 CCATCCGTGCTCCGAGTC 59.895 66.667 0.00 0.00 39.56 3.36
469 470 2.105128 CATCCGTGCTCCGAGTCC 59.895 66.667 0.00 0.00 39.56 3.85
470 471 2.043852 ATCCGTGCTCCGAGTCCT 60.044 61.111 0.00 0.00 39.56 3.85
471 472 1.101635 CATCCGTGCTCCGAGTCCTA 61.102 60.000 0.00 0.00 39.56 2.94
472 473 0.178987 ATCCGTGCTCCGAGTCCTAT 60.179 55.000 0.00 0.00 39.56 2.57
473 474 0.395311 TCCGTGCTCCGAGTCCTATT 60.395 55.000 0.00 0.00 39.56 1.73
474 475 0.460311 CCGTGCTCCGAGTCCTATTT 59.540 55.000 0.00 0.00 39.56 1.40
475 476 1.134788 CCGTGCTCCGAGTCCTATTTT 60.135 52.381 0.00 0.00 39.56 1.82
476 477 1.927174 CGTGCTCCGAGTCCTATTTTG 59.073 52.381 0.00 0.00 39.56 2.44
477 478 2.280628 GTGCTCCGAGTCCTATTTTGG 58.719 52.381 0.00 0.00 0.00 3.28
478 479 2.093658 GTGCTCCGAGTCCTATTTTGGA 60.094 50.000 0.00 0.00 0.00 3.53
514 515 5.704053 ACTTCGAAGTTCCCGTTTCATTAAT 59.296 36.000 24.93 0.00 35.21 1.40
539 540 1.799994 CGGCAAAATTTTGAAGCCCAG 59.200 47.619 30.40 15.23 42.28 4.45
541 542 2.497138 GCAAAATTTTGAAGCCCAGCT 58.503 42.857 30.40 0.00 40.55 4.24
542 543 2.224784 GCAAAATTTTGAAGCCCAGCTG 59.775 45.455 30.40 6.78 40.55 4.24
545 546 3.672767 AATTTTGAAGCCCAGCTGAAG 57.327 42.857 17.39 7.37 39.62 3.02
546 547 2.071778 TTTTGAAGCCCAGCTGAAGT 57.928 45.000 17.39 0.00 39.62 3.01
547 548 2.949177 TTTGAAGCCCAGCTGAAGTA 57.051 45.000 17.39 0.00 39.62 2.24
548 549 2.185004 TTGAAGCCCAGCTGAAGTAC 57.815 50.000 17.39 4.30 39.62 2.73
549 550 1.352083 TGAAGCCCAGCTGAAGTACT 58.648 50.000 17.39 1.51 39.62 2.73
550 551 1.276421 TGAAGCCCAGCTGAAGTACTC 59.724 52.381 17.39 4.51 39.62 2.59
551 552 1.276421 GAAGCCCAGCTGAAGTACTCA 59.724 52.381 17.39 0.00 39.62 3.41
552 553 1.352083 AGCCCAGCTGAAGTACTCAA 58.648 50.000 17.39 0.00 37.57 3.02
553 554 1.002544 AGCCCAGCTGAAGTACTCAAC 59.997 52.381 17.39 0.00 37.57 3.18
554 555 1.002544 GCCCAGCTGAAGTACTCAACT 59.997 52.381 17.39 0.00 41.49 3.16
555 556 2.693069 CCCAGCTGAAGTACTCAACTG 58.307 52.381 17.39 14.02 44.60 3.16
635 636 0.955919 CAAACCCCTCAACGCTCCTC 60.956 60.000 0.00 0.00 0.00 3.71
636 637 2.125766 AAACCCCTCAACGCTCCTCC 62.126 60.000 0.00 0.00 0.00 4.30
637 638 3.787001 CCCCTCAACGCTCCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
638 639 2.685380 CCCTCAACGCTCCTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
655 656 3.596799 TCCCTCCCACGTCCCTCA 61.597 66.667 0.00 0.00 0.00 3.86
851 865 2.125912 CGCCACTTCCTCGTCTGG 60.126 66.667 0.00 0.00 0.00 3.86
902 916 0.096281 GACAGAGCTCACGAGAGACG 59.904 60.000 17.77 0.88 44.98 4.18
947 964 2.325082 CCCGCTGCACAACACTACC 61.325 63.158 0.00 0.00 0.00 3.18
951 968 1.151668 GCTGCACAACACTACCAGAG 58.848 55.000 0.00 0.00 0.00 3.35
959 976 3.829601 ACAACACTACCAGAGAGAAGAGG 59.170 47.826 0.00 0.00 0.00 3.69
963 980 0.331954 TACCAGAGAGAAGAGGCGGT 59.668 55.000 0.00 0.00 0.00 5.68
965 982 0.741915 CCAGAGAGAAGAGGCGGTAC 59.258 60.000 0.00 0.00 0.00 3.34
966 983 1.683629 CCAGAGAGAAGAGGCGGTACT 60.684 57.143 0.00 0.00 0.00 2.73
967 984 1.403679 CAGAGAGAAGAGGCGGTACTG 59.596 57.143 0.00 0.00 0.00 2.74
968 985 0.101579 GAGAGAAGAGGCGGTACTGC 59.898 60.000 18.83 18.83 0.00 4.40
969 986 0.612174 AGAGAAGAGGCGGTACTGCA 60.612 55.000 27.29 0.00 36.28 4.41
970 987 0.461961 GAGAAGAGGCGGTACTGCAT 59.538 55.000 27.29 21.78 36.28 3.96
985 1002 2.951745 CATCCAGCGACGCTCGAC 60.952 66.667 21.67 0.00 43.74 4.20
1240 1260 1.154112 CGGCCGCGCTTACATTTTT 60.154 52.632 14.67 0.00 0.00 1.94
1248 1268 3.541916 CGCGCTTACATTTTTACATGTGG 59.458 43.478 9.11 0.00 37.93 4.17
1250 1270 4.920927 GCGCTTACATTTTTACATGTGGTT 59.079 37.500 9.11 0.00 37.93 3.67
1253 1273 5.637387 GCTTACATTTTTACATGTGGTTGGG 59.363 40.000 9.11 0.00 37.93 4.12
1485 1505 4.656117 TCACCGTGCGCGTCATGT 62.656 61.111 19.61 6.17 36.15 3.21
1625 1645 3.692406 GGCGACGGGAAGACCAGT 61.692 66.667 0.00 0.00 46.44 4.00
1729 1761 1.011463 CATGAGATGCTCGTTGCGC 60.011 57.895 0.00 0.00 46.63 6.09
1761 1793 0.110644 GCGTGTGCAAGCTGTTAGTC 60.111 55.000 3.00 0.00 42.15 2.59
1762 1794 1.502231 CGTGTGCAAGCTGTTAGTCT 58.498 50.000 0.00 0.00 0.00 3.24
1764 1796 2.760374 GTGTGCAAGCTGTTAGTCTCT 58.240 47.619 0.00 0.00 0.00 3.10
1777 1809 2.821991 AGTCTCTTTCCAAGGTCGTG 57.178 50.000 0.00 0.00 0.00 4.35
1859 1916 6.258160 GCTGGTAGCATGTTGTGTTAATTAG 58.742 40.000 0.00 0.00 41.89 1.73
1860 1917 6.189677 TGGTAGCATGTTGTGTTAATTAGC 57.810 37.500 0.00 0.00 0.00 3.09
1861 1918 5.943416 TGGTAGCATGTTGTGTTAATTAGCT 59.057 36.000 0.83 0.00 0.00 3.32
1862 1919 7.106890 TGGTAGCATGTTGTGTTAATTAGCTA 58.893 34.615 0.83 0.00 0.00 3.32
1867 1924 9.173021 AGCATGTTGTGTTAATTAGCTATTACA 57.827 29.630 0.00 0.00 0.00 2.41
1880 1963 7.997107 TTAGCTATTACATAGTTTGGTCGTG 57.003 36.000 0.00 0.00 35.29 4.35
1901 1985 5.113529 CGTGATTTGTTAACTTCTTGCGAAC 59.886 40.000 7.22 0.00 0.00 3.95
1902 1986 5.113529 GTGATTTGTTAACTTCTTGCGAACG 59.886 40.000 7.22 0.00 0.00 3.95
1903 1987 4.861389 TTTGTTAACTTCTTGCGAACGA 57.139 36.364 7.22 0.00 0.00 3.85
1904 1988 4.861389 TTGTTAACTTCTTGCGAACGAA 57.139 36.364 7.22 0.00 0.00 3.85
1908 1992 2.316119 ACTTCTTGCGAACGAATTGC 57.684 45.000 0.00 0.00 0.00 3.56
2023 2113 9.612066 AAACTCTTAATTTTCTTTTTGATGGCA 57.388 25.926 0.00 0.00 0.00 4.92
2027 2117 9.643693 TCTTAATTTTCTTTTTGATGGCATCTC 57.356 29.630 26.49 5.03 0.00 2.75
2028 2118 9.649167 CTTAATTTTCTTTTTGATGGCATCTCT 57.351 29.630 26.49 0.00 0.00 3.10
2032 2122 8.816640 TTTTCTTTTTGATGGCATCTCTAAAC 57.183 30.769 26.49 1.04 0.00 2.01
2033 2123 7.523293 TTCTTTTTGATGGCATCTCTAAACA 57.477 32.000 26.49 11.96 0.00 2.83
2034 2124 7.149569 TCTTTTTGATGGCATCTCTAAACAG 57.850 36.000 26.49 19.33 0.00 3.16
2037 2127 4.412796 TGATGGCATCTCTAAACAGGAG 57.587 45.455 26.49 0.00 0.00 3.69
2038 2128 4.033009 TGATGGCATCTCTAAACAGGAGA 58.967 43.478 26.49 0.20 42.89 3.71
2045 2135 6.704050 GGCATCTCTAAACAGGAGATTTCTAC 59.296 42.308 3.80 0.00 45.02 2.59
2153 2243 2.124903 CATTCCGTGACCATACTACGC 58.875 52.381 0.00 0.00 36.56 4.42
2155 2245 1.019673 TCCGTGACCATACTACGCTC 58.980 55.000 0.00 0.00 36.56 5.03
2160 2250 3.546417 CGTGACCATACTACGCTCTTCTC 60.546 52.174 0.00 0.00 0.00 2.87
2173 2263 2.600867 GCTCTTCTCGTTGAGAATTCCG 59.399 50.000 9.49 0.00 45.84 4.30
2204 2295 3.941088 CGTTTACGTACTCCTGAAACG 57.059 47.619 13.72 13.72 44.13 3.60
2206 2297 3.052036 GTTTACGTACTCCTGAAACGCA 58.948 45.455 0.00 0.00 40.18 5.24
2207 2298 2.624316 TACGTACTCCTGAAACGCAG 57.376 50.000 0.00 0.00 44.49 5.18
2242 2347 4.785453 CGCCTCTTCCAGCCACCC 62.785 72.222 0.00 0.00 0.00 4.61
2247 2352 1.831652 CTCTTCCAGCCACCCGTCTT 61.832 60.000 0.00 0.00 0.00 3.01
2385 2490 4.346709 GGGGAAGATAGAAGAAGGAGAAGG 59.653 50.000 0.00 0.00 0.00 3.46
2419 2524 3.518998 CGGCGAGAGGTGACGGAT 61.519 66.667 0.00 0.00 0.00 4.18
2562 2667 4.477975 CTCCGTCGTCCAGGTCGC 62.478 72.222 0.55 0.00 0.00 5.19
2626 2733 1.640917 TCAGTCACAGTTAGGTCCCC 58.359 55.000 0.00 0.00 0.00 4.81
2663 2770 4.018324 GGTTCCTAACCCTTCTCTCCAAAT 60.018 45.833 0.00 0.00 46.12 2.32
2693 2800 2.525368 GTGCTGTTATTTTGGGGAGGT 58.475 47.619 0.00 0.00 0.00 3.85
2700 2807 5.919755 TGTTATTTTGGGGAGGTGAAAAAC 58.080 37.500 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.924650 GGTTGTAACAAACTCTATCTCTTCTTA 57.075 33.333 0.00 0.00 0.00 2.10
10 11 7.599245 CGGTTGTAACAAACTCTATCTCTTCTT 59.401 37.037 0.00 0.00 0.00 2.52
11 12 7.039923 TCGGTTGTAACAAACTCTATCTCTTCT 60.040 37.037 0.00 0.00 0.00 2.85
12 13 7.062022 GTCGGTTGTAACAAACTCTATCTCTTC 59.938 40.741 0.00 0.00 0.00 2.87
13 14 6.867293 GTCGGTTGTAACAAACTCTATCTCTT 59.133 38.462 0.00 0.00 0.00 2.85
14 15 6.388278 GTCGGTTGTAACAAACTCTATCTCT 58.612 40.000 0.00 0.00 0.00 3.10
15 16 5.575995 GGTCGGTTGTAACAAACTCTATCTC 59.424 44.000 0.00 0.00 0.00 2.75
16 17 5.476614 GGTCGGTTGTAACAAACTCTATCT 58.523 41.667 0.00 0.00 0.00 1.98
17 18 4.628766 GGGTCGGTTGTAACAAACTCTATC 59.371 45.833 0.00 0.00 0.00 2.08
18 19 4.564199 GGGGTCGGTTGTAACAAACTCTAT 60.564 45.833 0.00 0.00 0.00 1.98
19 20 3.244181 GGGGTCGGTTGTAACAAACTCTA 60.244 47.826 0.00 0.00 0.00 2.43
20 21 2.486013 GGGGTCGGTTGTAACAAACTCT 60.486 50.000 0.00 0.00 0.00 3.24
21 22 1.875514 GGGGTCGGTTGTAACAAACTC 59.124 52.381 0.00 0.00 0.00 3.01
22 23 1.212441 TGGGGTCGGTTGTAACAAACT 59.788 47.619 0.00 0.00 0.00 2.66
23 24 1.677942 TGGGGTCGGTTGTAACAAAC 58.322 50.000 0.00 0.00 0.00 2.93
24 25 2.431954 TTGGGGTCGGTTGTAACAAA 57.568 45.000 0.00 0.00 0.00 2.83
25 26 2.660670 ATTGGGGTCGGTTGTAACAA 57.339 45.000 0.00 0.00 0.00 2.83
26 27 2.612471 CGTATTGGGGTCGGTTGTAACA 60.612 50.000 0.00 0.00 0.00 2.41
27 28 2.001872 CGTATTGGGGTCGGTTGTAAC 58.998 52.381 0.00 0.00 0.00 2.50
28 29 1.898472 TCGTATTGGGGTCGGTTGTAA 59.102 47.619 0.00 0.00 0.00 2.41
29 30 1.204467 GTCGTATTGGGGTCGGTTGTA 59.796 52.381 0.00 0.00 0.00 2.41
30 31 0.037046 GTCGTATTGGGGTCGGTTGT 60.037 55.000 0.00 0.00 0.00 3.32
31 32 0.037139 TGTCGTATTGGGGTCGGTTG 60.037 55.000 0.00 0.00 0.00 3.77
32 33 0.906775 ATGTCGTATTGGGGTCGGTT 59.093 50.000 0.00 0.00 0.00 4.44
33 34 1.779221 TATGTCGTATTGGGGTCGGT 58.221 50.000 0.00 0.00 0.00 4.69
34 35 2.894763 TTATGTCGTATTGGGGTCGG 57.105 50.000 0.00 0.00 0.00 4.79
35 36 4.435425 TCTTTTATGTCGTATTGGGGTCG 58.565 43.478 0.00 0.00 0.00 4.79
36 37 6.937436 AATCTTTTATGTCGTATTGGGGTC 57.063 37.500 0.00 0.00 0.00 4.46
37 38 7.571025 AGTAATCTTTTATGTCGTATTGGGGT 58.429 34.615 0.00 0.00 0.00 4.95
38 39 7.931948 AGAGTAATCTTTTATGTCGTATTGGGG 59.068 37.037 0.00 0.00 0.00 4.96
39 40 8.888579 AGAGTAATCTTTTATGTCGTATTGGG 57.111 34.615 0.00 0.00 0.00 4.12
44 45 9.932207 TTTGGAAGAGTAATCTTTTATGTCGTA 57.068 29.630 6.91 0.00 0.00 3.43
45 46 8.842358 TTTGGAAGAGTAATCTTTTATGTCGT 57.158 30.769 6.91 0.00 0.00 4.34
54 55 9.807921 TGGTTCTTATTTTGGAAGAGTAATCTT 57.192 29.630 4.86 4.86 34.50 2.40
55 56 9.232473 GTGGTTCTTATTTTGGAAGAGTAATCT 57.768 33.333 0.00 0.00 34.50 2.40
56 57 8.459635 GGTGGTTCTTATTTTGGAAGAGTAATC 58.540 37.037 0.00 0.00 34.50 1.75
57 58 7.947890 TGGTGGTTCTTATTTTGGAAGAGTAAT 59.052 33.333 0.00 0.00 34.50 1.89
58 59 7.291566 TGGTGGTTCTTATTTTGGAAGAGTAA 58.708 34.615 0.00 0.00 34.50 2.24
59 60 6.843752 TGGTGGTTCTTATTTTGGAAGAGTA 58.156 36.000 0.00 0.00 34.50 2.59
60 61 5.701224 TGGTGGTTCTTATTTTGGAAGAGT 58.299 37.500 0.00 0.00 34.50 3.24
61 62 6.648879 TTGGTGGTTCTTATTTTGGAAGAG 57.351 37.500 0.00 0.00 34.50 2.85
62 63 5.010617 GCTTGGTGGTTCTTATTTTGGAAGA 59.989 40.000 0.00 0.00 0.00 2.87
63 64 5.011023 AGCTTGGTGGTTCTTATTTTGGAAG 59.989 40.000 0.00 0.00 0.00 3.46
64 65 4.898861 AGCTTGGTGGTTCTTATTTTGGAA 59.101 37.500 0.00 0.00 0.00 3.53
65 66 4.479158 AGCTTGGTGGTTCTTATTTTGGA 58.521 39.130 0.00 0.00 0.00 3.53
66 67 4.871933 AGCTTGGTGGTTCTTATTTTGG 57.128 40.909 0.00 0.00 0.00 3.28
67 68 7.408910 CAAAAAGCTTGGTGGTTCTTATTTTG 58.591 34.615 0.00 0.00 35.02 2.44
68 69 6.542005 CCAAAAAGCTTGGTGGTTCTTATTTT 59.458 34.615 17.02 0.35 35.02 1.82
69 70 6.054941 CCAAAAAGCTTGGTGGTTCTTATTT 58.945 36.000 17.02 0.53 35.02 1.40
70 71 5.610398 CCAAAAAGCTTGGTGGTTCTTATT 58.390 37.500 17.02 0.00 35.02 1.40
71 72 4.503123 GCCAAAAAGCTTGGTGGTTCTTAT 60.503 41.667 23.07 0.00 41.53 1.73
72 73 3.181470 GCCAAAAAGCTTGGTGGTTCTTA 60.181 43.478 23.07 0.00 41.53 2.10
73 74 2.419990 GCCAAAAAGCTTGGTGGTTCTT 60.420 45.455 23.07 0.93 41.53 2.52
74 75 1.138859 GCCAAAAAGCTTGGTGGTTCT 59.861 47.619 23.07 0.00 41.53 3.01
75 76 1.134551 TGCCAAAAAGCTTGGTGGTTC 60.135 47.619 23.07 12.40 41.53 3.62
76 77 0.908198 TGCCAAAAAGCTTGGTGGTT 59.092 45.000 23.07 2.94 41.53 3.67
77 78 0.177836 GTGCCAAAAAGCTTGGTGGT 59.822 50.000 23.07 0.00 41.53 4.16
78 79 0.532640 GGTGCCAAAAAGCTTGGTGG 60.533 55.000 19.79 19.79 41.53 4.61
79 80 0.532640 GGGTGCCAAAAAGCTTGGTG 60.533 55.000 0.00 0.61 41.53 4.17
80 81 1.829456 GGGTGCCAAAAAGCTTGGT 59.171 52.632 0.00 0.00 41.53 3.67
81 82 1.300853 CGGGTGCCAAAAAGCTTGG 60.301 57.895 0.00 0.00 42.37 3.61
82 83 1.955663 GCGGGTGCCAAAAAGCTTG 60.956 57.895 0.00 0.00 33.98 4.01
83 84 2.421314 GCGGGTGCCAAAAAGCTT 59.579 55.556 0.00 0.00 33.98 3.74
84 85 3.977244 CGCGGGTGCCAAAAAGCT 61.977 61.111 0.00 0.00 38.08 3.74
86 87 3.551887 GACCGCGGGTGCCAAAAAG 62.552 63.158 31.76 0.00 35.25 2.27
87 88 3.597728 GACCGCGGGTGCCAAAAA 61.598 61.111 31.76 0.00 35.25 1.94
88 89 4.877619 TGACCGCGGGTGCCAAAA 62.878 61.111 31.76 1.94 35.25 2.44
102 103 0.609406 GAGGGAAGGCTTTGGGTGAC 60.609 60.000 0.00 0.00 0.00 3.67
103 104 1.065410 TGAGGGAAGGCTTTGGGTGA 61.065 55.000 0.00 0.00 0.00 4.02
104 105 0.040204 ATGAGGGAAGGCTTTGGGTG 59.960 55.000 0.00 0.00 0.00 4.61
105 106 0.332972 GATGAGGGAAGGCTTTGGGT 59.667 55.000 0.00 0.00 0.00 4.51
106 107 0.396278 GGATGAGGGAAGGCTTTGGG 60.396 60.000 0.00 0.00 0.00 4.12
107 108 0.627986 AGGATGAGGGAAGGCTTTGG 59.372 55.000 0.00 0.00 0.00 3.28
108 109 2.097825 CAAGGATGAGGGAAGGCTTTG 58.902 52.381 0.00 0.00 0.00 2.77
109 110 1.995542 TCAAGGATGAGGGAAGGCTTT 59.004 47.619 0.00 0.00 0.00 3.51
110 111 1.673767 TCAAGGATGAGGGAAGGCTT 58.326 50.000 0.00 0.00 0.00 4.35
111 112 1.493871 CATCAAGGATGAGGGAAGGCT 59.506 52.381 0.00 0.00 42.09 4.58
112 113 1.492176 TCATCAAGGATGAGGGAAGGC 59.508 52.381 4.86 0.00 43.11 4.35
125 126 6.292757 CGATAATCTTGCTCAACCTCATCAAG 60.293 42.308 0.00 0.00 36.42 3.02
126 127 5.525012 CGATAATCTTGCTCAACCTCATCAA 59.475 40.000 0.00 0.00 0.00 2.57
127 128 5.052481 CGATAATCTTGCTCAACCTCATCA 58.948 41.667 0.00 0.00 0.00 3.07
128 129 4.450419 CCGATAATCTTGCTCAACCTCATC 59.550 45.833 0.00 0.00 0.00 2.92
129 130 4.101585 TCCGATAATCTTGCTCAACCTCAT 59.898 41.667 0.00 0.00 0.00 2.90
130 131 3.450817 TCCGATAATCTTGCTCAACCTCA 59.549 43.478 0.00 0.00 0.00 3.86
131 132 4.054671 CTCCGATAATCTTGCTCAACCTC 58.945 47.826 0.00 0.00 0.00 3.85
132 133 3.181461 CCTCCGATAATCTTGCTCAACCT 60.181 47.826 0.00 0.00 0.00 3.50
133 134 3.134458 CCTCCGATAATCTTGCTCAACC 58.866 50.000 0.00 0.00 0.00 3.77
134 135 4.054671 CTCCTCCGATAATCTTGCTCAAC 58.945 47.826 0.00 0.00 0.00 3.18
135 136 3.493350 GCTCCTCCGATAATCTTGCTCAA 60.493 47.826 0.00 0.00 0.00 3.02
136 137 2.036475 GCTCCTCCGATAATCTTGCTCA 59.964 50.000 0.00 0.00 0.00 4.26
137 138 2.682836 GCTCCTCCGATAATCTTGCTC 58.317 52.381 0.00 0.00 0.00 4.26
138 139 1.000283 CGCTCCTCCGATAATCTTGCT 60.000 52.381 0.00 0.00 0.00 3.91
139 140 1.423395 CGCTCCTCCGATAATCTTGC 58.577 55.000 0.00 0.00 0.00 4.01
140 141 1.000283 AGCGCTCCTCCGATAATCTTG 60.000 52.381 2.64 0.00 0.00 3.02
141 142 1.333177 AGCGCTCCTCCGATAATCTT 58.667 50.000 2.64 0.00 0.00 2.40
142 143 1.333177 AAGCGCTCCTCCGATAATCT 58.667 50.000 12.06 0.00 0.00 2.40
143 144 2.156343 AAAGCGCTCCTCCGATAATC 57.844 50.000 12.06 0.00 0.00 1.75
144 145 2.213499 CAAAAGCGCTCCTCCGATAAT 58.787 47.619 12.06 0.00 0.00 1.28
145 146 1.066430 ACAAAAGCGCTCCTCCGATAA 60.066 47.619 12.06 0.00 0.00 1.75
146 147 0.535335 ACAAAAGCGCTCCTCCGATA 59.465 50.000 12.06 0.00 0.00 2.92
147 148 1.021390 CACAAAAGCGCTCCTCCGAT 61.021 55.000 12.06 0.00 0.00 4.18
148 149 1.667830 CACAAAAGCGCTCCTCCGA 60.668 57.895 12.06 0.00 0.00 4.55
149 150 1.667830 TCACAAAAGCGCTCCTCCG 60.668 57.895 12.06 0.00 0.00 4.63
150 151 1.869690 GTCACAAAAGCGCTCCTCC 59.130 57.895 12.06 0.00 0.00 4.30
151 152 1.493311 CGTCACAAAAGCGCTCCTC 59.507 57.895 12.06 0.00 0.00 3.71
152 153 1.961277 CCGTCACAAAAGCGCTCCT 60.961 57.895 12.06 0.00 0.00 3.69
153 154 1.503818 TTCCGTCACAAAAGCGCTCC 61.504 55.000 12.06 0.00 0.00 4.70
154 155 0.110644 CTTCCGTCACAAAAGCGCTC 60.111 55.000 12.06 0.00 0.00 5.03
155 156 0.531974 TCTTCCGTCACAAAAGCGCT 60.532 50.000 2.64 2.64 0.00 5.92
156 157 0.384353 GTCTTCCGTCACAAAAGCGC 60.384 55.000 0.00 0.00 0.00 5.92
157 158 0.234884 GGTCTTCCGTCACAAAAGCG 59.765 55.000 0.00 0.00 0.00 4.68
158 159 1.594331 AGGTCTTCCGTCACAAAAGC 58.406 50.000 0.00 0.00 39.05 3.51
159 160 3.186613 GCTAAGGTCTTCCGTCACAAAAG 59.813 47.826 0.00 0.00 39.05 2.27
160 161 3.135994 GCTAAGGTCTTCCGTCACAAAA 58.864 45.455 0.00 0.00 39.05 2.44
161 162 2.103432 TGCTAAGGTCTTCCGTCACAAA 59.897 45.455 0.00 0.00 39.05 2.83
162 163 1.689813 TGCTAAGGTCTTCCGTCACAA 59.310 47.619 0.00 0.00 39.05 3.33
163 164 1.334160 TGCTAAGGTCTTCCGTCACA 58.666 50.000 0.00 0.00 39.05 3.58
164 165 2.673368 CAATGCTAAGGTCTTCCGTCAC 59.327 50.000 0.00 0.00 39.05 3.67
165 166 2.935238 GCAATGCTAAGGTCTTCCGTCA 60.935 50.000 0.00 0.00 39.05 4.35
166 167 1.666189 GCAATGCTAAGGTCTTCCGTC 59.334 52.381 0.00 0.00 39.05 4.79
167 168 1.739067 GCAATGCTAAGGTCTTCCGT 58.261 50.000 0.00 0.00 39.05 4.69
168 169 0.652592 CGCAATGCTAAGGTCTTCCG 59.347 55.000 2.94 0.00 39.05 4.30
169 170 0.378610 GCGCAATGCTAAGGTCTTCC 59.621 55.000 0.30 0.00 41.73 3.46
170 171 3.905900 GCGCAATGCTAAGGTCTTC 57.094 52.632 0.30 0.00 41.73 2.87
180 181 0.456653 ATTTGGAACGAGCGCAATGC 60.457 50.000 11.47 0.00 46.98 3.56
181 182 1.650153 CAATTTGGAACGAGCGCAATG 59.350 47.619 11.47 0.02 0.00 2.82
182 183 1.981254 CAATTTGGAACGAGCGCAAT 58.019 45.000 11.47 0.00 0.00 3.56
183 184 0.662970 GCAATTTGGAACGAGCGCAA 60.663 50.000 11.47 0.00 0.00 4.85
184 185 1.081509 GCAATTTGGAACGAGCGCA 60.082 52.632 11.47 0.00 0.00 6.09
185 186 1.801512 GGCAATTTGGAACGAGCGC 60.802 57.895 0.00 0.00 0.00 5.92
186 187 1.154035 GGGCAATTTGGAACGAGCG 60.154 57.895 0.00 0.00 0.00 5.03
187 188 0.316841 TTGGGCAATTTGGAACGAGC 59.683 50.000 0.00 0.00 0.00 5.03
188 189 1.613437 ACTTGGGCAATTTGGAACGAG 59.387 47.619 0.00 0.00 0.00 4.18
189 190 1.339610 CACTTGGGCAATTTGGAACGA 59.660 47.619 0.00 0.00 0.00 3.85
190 191 1.339610 TCACTTGGGCAATTTGGAACG 59.660 47.619 0.00 0.00 0.00 3.95
191 192 2.102252 TGTCACTTGGGCAATTTGGAAC 59.898 45.455 0.00 0.00 0.00 3.62
192 193 2.392662 TGTCACTTGGGCAATTTGGAA 58.607 42.857 0.00 0.00 0.00 3.53
193 194 2.079170 TGTCACTTGGGCAATTTGGA 57.921 45.000 0.00 0.00 0.00 3.53
194 195 2.758009 CTTGTCACTTGGGCAATTTGG 58.242 47.619 0.00 0.00 0.00 3.28
195 196 2.137523 GCTTGTCACTTGGGCAATTTG 58.862 47.619 0.00 0.00 0.00 2.32
196 197 1.761784 TGCTTGTCACTTGGGCAATTT 59.238 42.857 0.00 0.00 0.00 1.82
197 198 1.412079 TGCTTGTCACTTGGGCAATT 58.588 45.000 0.00 0.00 0.00 2.32
198 199 1.547372 GATGCTTGTCACTTGGGCAAT 59.453 47.619 0.00 0.00 36.49 3.56
199 200 0.961019 GATGCTTGTCACTTGGGCAA 59.039 50.000 0.00 0.00 36.49 4.52
200 201 1.236616 CGATGCTTGTCACTTGGGCA 61.237 55.000 0.00 0.00 37.32 5.36
201 202 1.237285 ACGATGCTTGTCACTTGGGC 61.237 55.000 0.00 0.00 0.00 5.36
202 203 0.518636 CACGATGCTTGTCACTTGGG 59.481 55.000 0.00 0.00 0.00 4.12
203 204 1.462283 CTCACGATGCTTGTCACTTGG 59.538 52.381 0.00 0.00 0.00 3.61
204 205 1.462283 CCTCACGATGCTTGTCACTTG 59.538 52.381 0.00 0.00 0.00 3.16
205 206 1.609061 CCCTCACGATGCTTGTCACTT 60.609 52.381 0.00 0.00 0.00 3.16
206 207 0.036952 CCCTCACGATGCTTGTCACT 60.037 55.000 0.00 0.00 0.00 3.41
207 208 0.037326 TCCCTCACGATGCTTGTCAC 60.037 55.000 0.00 0.00 0.00 3.67
208 209 0.247460 CTCCCTCACGATGCTTGTCA 59.753 55.000 0.00 0.00 0.00 3.58
209 210 0.460987 CCTCCCTCACGATGCTTGTC 60.461 60.000 0.00 0.00 0.00 3.18
210 211 1.599047 CCTCCCTCACGATGCTTGT 59.401 57.895 0.00 0.00 0.00 3.16
211 212 1.817099 GCCTCCCTCACGATGCTTG 60.817 63.158 0.00 0.00 0.00 4.01
212 213 1.992277 AGCCTCCCTCACGATGCTT 60.992 57.895 0.00 0.00 30.58 3.91
213 214 2.364842 AGCCTCCCTCACGATGCT 60.365 61.111 0.00 0.00 0.00 3.79
214 215 2.202987 CAGCCTCCCTCACGATGC 60.203 66.667 0.00 0.00 0.00 3.91
215 216 0.742281 CAACAGCCTCCCTCACGATG 60.742 60.000 0.00 0.00 0.00 3.84
216 217 0.904865 TCAACAGCCTCCCTCACGAT 60.905 55.000 0.00 0.00 0.00 3.73
217 218 0.904865 ATCAACAGCCTCCCTCACGA 60.905 55.000 0.00 0.00 0.00 4.35
218 219 0.036010 AATCAACAGCCTCCCTCACG 60.036 55.000 0.00 0.00 0.00 4.35
219 220 2.206576 AAATCAACAGCCTCCCTCAC 57.793 50.000 0.00 0.00 0.00 3.51
220 221 2.376518 AGAAAATCAACAGCCTCCCTCA 59.623 45.455 0.00 0.00 0.00 3.86
221 222 3.078891 AGAAAATCAACAGCCTCCCTC 57.921 47.619 0.00 0.00 0.00 4.30
222 223 4.870021 ATAGAAAATCAACAGCCTCCCT 57.130 40.909 0.00 0.00 0.00 4.20
223 224 4.035675 CGAATAGAAAATCAACAGCCTCCC 59.964 45.833 0.00 0.00 0.00 4.30
224 225 4.035675 CCGAATAGAAAATCAACAGCCTCC 59.964 45.833 0.00 0.00 0.00 4.30
225 226 4.496507 GCCGAATAGAAAATCAACAGCCTC 60.497 45.833 0.00 0.00 0.00 4.70
226 227 3.378427 GCCGAATAGAAAATCAACAGCCT 59.622 43.478 0.00 0.00 0.00 4.58
227 228 3.128589 TGCCGAATAGAAAATCAACAGCC 59.871 43.478 0.00 0.00 0.00 4.85
228 229 4.355543 TGCCGAATAGAAAATCAACAGC 57.644 40.909 0.00 0.00 0.00 4.40
229 230 4.795278 GCTTGCCGAATAGAAAATCAACAG 59.205 41.667 0.00 0.00 0.00 3.16
230 231 4.458989 AGCTTGCCGAATAGAAAATCAACA 59.541 37.500 0.00 0.00 0.00 3.33
231 232 4.986622 AGCTTGCCGAATAGAAAATCAAC 58.013 39.130 0.00 0.00 0.00 3.18
232 233 6.542005 TGATAGCTTGCCGAATAGAAAATCAA 59.458 34.615 0.00 0.00 0.00 2.57
233 234 6.017934 GTGATAGCTTGCCGAATAGAAAATCA 60.018 38.462 0.00 0.00 0.00 2.57
234 235 6.366630 GTGATAGCTTGCCGAATAGAAAATC 58.633 40.000 0.00 0.00 0.00 2.17
235 236 5.239525 GGTGATAGCTTGCCGAATAGAAAAT 59.760 40.000 0.00 0.00 0.00 1.82
236 237 4.574828 GGTGATAGCTTGCCGAATAGAAAA 59.425 41.667 0.00 0.00 0.00 2.29
237 238 4.127171 GGTGATAGCTTGCCGAATAGAAA 58.873 43.478 0.00 0.00 0.00 2.52
238 239 3.728845 GGTGATAGCTTGCCGAATAGAA 58.271 45.455 0.00 0.00 0.00 2.10
239 240 2.288213 CGGTGATAGCTTGCCGAATAGA 60.288 50.000 10.95 0.00 46.33 1.98
240 241 2.061773 CGGTGATAGCTTGCCGAATAG 58.938 52.381 10.95 0.00 46.33 1.73
241 242 1.270094 CCGGTGATAGCTTGCCGAATA 60.270 52.381 16.02 0.00 46.33 1.75
242 243 0.532862 CCGGTGATAGCTTGCCGAAT 60.533 55.000 16.02 0.00 46.33 3.34
243 244 1.153449 CCGGTGATAGCTTGCCGAA 60.153 57.895 16.02 0.00 46.33 4.30
244 245 2.499205 CCGGTGATAGCTTGCCGA 59.501 61.111 16.02 0.00 46.33 5.54
245 246 3.272334 GCCGGTGATAGCTTGCCG 61.272 66.667 1.90 0.75 43.40 5.69
246 247 2.902343 GGCCGGTGATAGCTTGCC 60.902 66.667 1.90 0.00 0.00 4.52
247 248 3.272334 CGGCCGGTGATAGCTTGC 61.272 66.667 20.10 0.00 0.00 4.01
248 249 3.272334 GCGGCCGGTGATAGCTTG 61.272 66.667 29.38 0.00 0.00 4.01
249 250 3.031417 AAGCGGCCGGTGATAGCTT 62.031 57.895 33.14 18.29 42.51 3.74
250 251 2.131709 TAAGCGGCCGGTGATAGCT 61.132 57.895 33.14 16.84 40.20 3.32
251 252 1.954651 GTAAGCGGCCGGTGATAGC 60.955 63.158 33.14 15.18 0.00 2.97
252 253 0.318784 GAGTAAGCGGCCGGTGATAG 60.319 60.000 33.14 0.00 0.00 2.08
253 254 1.737816 GAGTAAGCGGCCGGTGATA 59.262 57.895 33.14 18.13 0.00 2.15
254 255 2.499685 GAGTAAGCGGCCGGTGAT 59.500 61.111 33.14 19.34 0.00 3.06
255 256 3.766691 GGAGTAAGCGGCCGGTGA 61.767 66.667 33.14 22.92 0.00 4.02
256 257 4.077184 TGGAGTAAGCGGCCGGTG 62.077 66.667 33.14 0.00 0.00 4.94
257 258 4.078516 GTGGAGTAAGCGGCCGGT 62.079 66.667 26.97 26.97 0.00 5.28
258 259 4.832608 GGTGGAGTAAGCGGCCGG 62.833 72.222 29.38 8.95 0.00 6.13
259 260 2.869503 ATTGGTGGAGTAAGCGGCCG 62.870 60.000 24.05 24.05 0.00 6.13
260 261 1.077716 ATTGGTGGAGTAAGCGGCC 60.078 57.895 0.00 0.00 0.00 6.13
261 262 1.095807 GGATTGGTGGAGTAAGCGGC 61.096 60.000 0.00 0.00 0.00 6.53
262 263 0.541863 AGGATTGGTGGAGTAAGCGG 59.458 55.000 0.00 0.00 0.00 5.52
263 264 1.207089 TGAGGATTGGTGGAGTAAGCG 59.793 52.381 0.00 0.00 0.00 4.68
264 265 3.010420 GTTGAGGATTGGTGGAGTAAGC 58.990 50.000 0.00 0.00 0.00 3.09
265 266 4.020218 TCTGTTGAGGATTGGTGGAGTAAG 60.020 45.833 0.00 0.00 0.00 2.34
266 267 3.907474 TCTGTTGAGGATTGGTGGAGTAA 59.093 43.478 0.00 0.00 0.00 2.24
267 268 3.515502 CTCTGTTGAGGATTGGTGGAGTA 59.484 47.826 0.00 0.00 36.70 2.59
268 269 2.304180 CTCTGTTGAGGATTGGTGGAGT 59.696 50.000 0.00 0.00 36.70 3.85
269 270 2.304180 ACTCTGTTGAGGATTGGTGGAG 59.696 50.000 0.00 0.00 44.29 3.86
270 271 2.338809 ACTCTGTTGAGGATTGGTGGA 58.661 47.619 0.00 0.00 44.29 4.02
271 272 2.816087 CAACTCTGTTGAGGATTGGTGG 59.184 50.000 4.60 0.00 44.29 4.61
272 273 3.480470 ACAACTCTGTTGAGGATTGGTG 58.520 45.455 16.04 0.00 44.29 4.17
273 274 3.496870 GGACAACTCTGTTGAGGATTGGT 60.497 47.826 16.04 0.00 44.29 3.67
274 275 3.077359 GGACAACTCTGTTGAGGATTGG 58.923 50.000 16.04 0.00 44.29 3.16
275 276 3.743521 TGGACAACTCTGTTGAGGATTG 58.256 45.455 16.04 0.00 44.29 2.67
276 277 4.437682 TTGGACAACTCTGTTGAGGATT 57.562 40.909 16.04 0.00 44.29 3.01
277 278 4.437682 TTTGGACAACTCTGTTGAGGAT 57.562 40.909 16.04 0.00 44.29 3.24
278 279 3.924114 TTTGGACAACTCTGTTGAGGA 57.076 42.857 16.04 0.00 44.29 3.71
279 280 3.304928 GCATTTGGACAACTCTGTTGAGG 60.305 47.826 16.04 0.00 44.29 3.86
280 281 3.304928 GGCATTTGGACAACTCTGTTGAG 60.305 47.826 16.04 0.00 45.43 3.02
281 282 2.622942 GGCATTTGGACAACTCTGTTGA 59.377 45.455 16.04 0.00 35.30 3.18
282 283 2.361757 TGGCATTTGGACAACTCTGTTG 59.638 45.455 8.66 8.66 35.30 3.33
283 284 2.665165 TGGCATTTGGACAACTCTGTT 58.335 42.857 0.00 0.00 35.30 3.16
284 285 2.363306 TGGCATTTGGACAACTCTGT 57.637 45.000 0.00 0.00 38.98 3.41
285 286 2.029649 CCTTGGCATTTGGACAACTCTG 60.030 50.000 0.00 0.00 40.44 3.35
286 287 2.242043 CCTTGGCATTTGGACAACTCT 58.758 47.619 0.00 0.00 40.44 3.24
287 288 1.273327 CCCTTGGCATTTGGACAACTC 59.727 52.381 0.00 0.00 40.44 3.01
288 289 1.341080 CCCTTGGCATTTGGACAACT 58.659 50.000 0.00 0.00 40.44 3.16
289 290 0.321346 CCCCTTGGCATTTGGACAAC 59.679 55.000 0.00 0.00 40.44 3.32
290 291 0.835543 CCCCCTTGGCATTTGGACAA 60.836 55.000 0.00 0.00 44.08 3.18
291 292 1.229145 CCCCCTTGGCATTTGGACA 60.229 57.895 0.00 0.00 0.00 4.02
292 293 3.712287 CCCCCTTGGCATTTGGAC 58.288 61.111 0.00 0.00 0.00 4.02
306 307 1.228925 CCTCCTCCTCGATACCCCC 60.229 68.421 0.00 0.00 0.00 5.40
307 308 1.909287 GCCTCCTCCTCGATACCCC 60.909 68.421 0.00 0.00 0.00 4.95
308 309 1.152525 TGCCTCCTCCTCGATACCC 60.153 63.158 0.00 0.00 0.00 3.69
309 310 0.468400 AGTGCCTCCTCCTCGATACC 60.468 60.000 0.00 0.00 0.00 2.73
310 311 0.955905 GAGTGCCTCCTCCTCGATAC 59.044 60.000 0.00 0.00 0.00 2.24
311 312 0.847373 AGAGTGCCTCCTCCTCGATA 59.153 55.000 0.00 0.00 31.53 2.92
312 313 0.032615 AAGAGTGCCTCCTCCTCGAT 60.033 55.000 0.00 0.00 31.53 3.59
313 314 0.251832 AAAGAGTGCCTCCTCCTCGA 60.252 55.000 0.00 0.00 31.53 4.04
314 315 1.475403 TAAAGAGTGCCTCCTCCTCG 58.525 55.000 0.00 0.00 31.53 4.63
315 316 2.093394 GGTTAAAGAGTGCCTCCTCCTC 60.093 54.545 0.00 0.00 31.53 3.71
316 317 1.909986 GGTTAAAGAGTGCCTCCTCCT 59.090 52.381 0.00 0.00 31.53 3.69
317 318 1.628846 TGGTTAAAGAGTGCCTCCTCC 59.371 52.381 0.00 0.00 31.53 4.30
318 319 3.244596 ACTTGGTTAAAGAGTGCCTCCTC 60.245 47.826 0.00 0.00 39.38 3.71
319 320 2.711547 ACTTGGTTAAAGAGTGCCTCCT 59.288 45.455 0.00 0.00 39.38 3.69
320 321 3.141767 ACTTGGTTAAAGAGTGCCTCC 57.858 47.619 0.00 0.00 39.38 4.30
321 322 3.502595 GGAACTTGGTTAAAGAGTGCCTC 59.497 47.826 4.58 0.00 36.37 4.70
322 323 3.117663 TGGAACTTGGTTAAAGAGTGCCT 60.118 43.478 10.79 0.00 39.47 4.75
323 324 3.219281 TGGAACTTGGTTAAAGAGTGCC 58.781 45.455 4.80 4.80 39.23 5.01
324 325 4.911514 TTGGAACTTGGTTAAAGAGTGC 57.088 40.909 0.00 0.00 39.38 4.40
325 326 5.281727 GCTTTGGAACTTGGTTAAAGAGTG 58.718 41.667 0.00 0.00 39.38 3.51
326 327 4.341235 GGCTTTGGAACTTGGTTAAAGAGT 59.659 41.667 0.00 0.00 39.38 3.24
327 328 4.584743 AGGCTTTGGAACTTGGTTAAAGAG 59.415 41.667 0.00 0.00 39.38 2.85
328 329 4.542697 AGGCTTTGGAACTTGGTTAAAGA 58.457 39.130 0.00 0.00 39.38 2.52
329 330 4.937201 AGGCTTTGGAACTTGGTTAAAG 57.063 40.909 0.00 0.00 42.07 1.85
330 331 4.712337 TCAAGGCTTTGGAACTTGGTTAAA 59.288 37.500 8.88 0.00 41.35 1.52
331 332 4.282496 TCAAGGCTTTGGAACTTGGTTAA 58.718 39.130 8.88 0.00 41.35 2.01
332 333 3.888930 CTCAAGGCTTTGGAACTTGGTTA 59.111 43.478 8.88 0.00 41.35 2.85
333 334 2.695147 CTCAAGGCTTTGGAACTTGGTT 59.305 45.455 8.88 0.00 41.35 3.67
334 335 2.310538 CTCAAGGCTTTGGAACTTGGT 58.689 47.619 8.88 0.00 41.35 3.67
335 336 1.615392 CCTCAAGGCTTTGGAACTTGG 59.385 52.381 8.88 0.00 41.35 3.61
336 337 2.035066 CACCTCAAGGCTTTGGAACTTG 59.965 50.000 19.27 0.00 42.14 3.16
337 338 2.091885 TCACCTCAAGGCTTTGGAACTT 60.092 45.455 19.27 0.00 39.32 2.66
338 339 1.494721 TCACCTCAAGGCTTTGGAACT 59.505 47.619 19.27 0.00 39.32 3.01
339 340 1.981256 TCACCTCAAGGCTTTGGAAC 58.019 50.000 19.27 0.00 39.32 3.62
340 341 2.693074 GTTTCACCTCAAGGCTTTGGAA 59.307 45.455 19.27 4.89 39.32 3.53
341 342 2.306847 GTTTCACCTCAAGGCTTTGGA 58.693 47.619 19.27 5.25 39.32 3.53
342 343 1.001378 CGTTTCACCTCAAGGCTTTGG 60.001 52.381 8.88 12.84 39.32 3.28
343 344 1.946768 TCGTTTCACCTCAAGGCTTTG 59.053 47.619 1.35 1.35 39.32 2.77
344 345 1.947456 GTCGTTTCACCTCAAGGCTTT 59.053 47.619 0.00 0.00 39.32 3.51
345 346 1.134220 TGTCGTTTCACCTCAAGGCTT 60.134 47.619 0.00 0.00 39.32 4.35
346 347 0.468226 TGTCGTTTCACCTCAAGGCT 59.532 50.000 0.00 0.00 39.32 4.58
347 348 1.305201 TTGTCGTTTCACCTCAAGGC 58.695 50.000 0.00 0.00 39.32 4.35
348 349 3.315191 ACAATTGTCGTTTCACCTCAAGG 59.685 43.478 4.92 0.00 42.17 3.61
349 350 4.552166 ACAATTGTCGTTTCACCTCAAG 57.448 40.909 4.92 0.00 0.00 3.02
350 351 5.361427 TCTACAATTGTCGTTTCACCTCAA 58.639 37.500 15.85 0.00 0.00 3.02
351 352 4.951254 TCTACAATTGTCGTTTCACCTCA 58.049 39.130 15.85 0.00 0.00 3.86
352 353 4.143094 GCTCTACAATTGTCGTTTCACCTC 60.143 45.833 15.85 0.00 0.00 3.85
353 354 3.746492 GCTCTACAATTGTCGTTTCACCT 59.254 43.478 15.85 0.00 0.00 4.00
354 355 3.496884 TGCTCTACAATTGTCGTTTCACC 59.503 43.478 15.85 0.00 0.00 4.02
355 356 4.725556 TGCTCTACAATTGTCGTTTCAC 57.274 40.909 15.85 0.41 0.00 3.18
356 357 4.814234 ACTTGCTCTACAATTGTCGTTTCA 59.186 37.500 15.85 5.45 37.72 2.69
357 358 5.050363 TCACTTGCTCTACAATTGTCGTTTC 60.050 40.000 15.85 2.83 39.34 2.78
358 359 4.814234 TCACTTGCTCTACAATTGTCGTTT 59.186 37.500 15.85 0.00 39.34 3.60
359 360 4.377021 TCACTTGCTCTACAATTGTCGTT 58.623 39.130 15.85 0.00 39.34 3.85
360 361 3.990092 TCACTTGCTCTACAATTGTCGT 58.010 40.909 15.85 0.00 39.34 4.34
361 362 3.181526 GCTCACTTGCTCTACAATTGTCG 60.182 47.826 15.85 9.28 39.34 4.35
362 363 3.181526 CGCTCACTTGCTCTACAATTGTC 60.182 47.826 15.85 0.75 39.34 3.18
363 364 2.738846 CGCTCACTTGCTCTACAATTGT 59.261 45.455 16.68 16.68 39.34 2.71
364 365 2.475187 GCGCTCACTTGCTCTACAATTG 60.475 50.000 3.24 3.24 39.60 2.32
365 366 1.734465 GCGCTCACTTGCTCTACAATT 59.266 47.619 0.00 0.00 37.72 2.32
366 367 1.363744 GCGCTCACTTGCTCTACAAT 58.636 50.000 0.00 0.00 37.72 2.71
367 368 1.008875 CGCGCTCACTTGCTCTACAA 61.009 55.000 5.56 0.00 36.62 2.41
368 369 1.444383 CGCGCTCACTTGCTCTACA 60.444 57.895 5.56 0.00 0.00 2.74
369 370 2.161486 CCGCGCTCACTTGCTCTAC 61.161 63.158 5.56 0.00 0.00 2.59
370 371 2.181777 CCGCGCTCACTTGCTCTA 59.818 61.111 5.56 0.00 0.00 2.43
371 372 4.749310 CCCGCGCTCACTTGCTCT 62.749 66.667 5.56 0.00 0.00 4.09
372 373 4.742201 TCCCGCGCTCACTTGCTC 62.742 66.667 5.56 0.00 0.00 4.26
373 374 3.612247 AATCCCGCGCTCACTTGCT 62.612 57.895 5.56 0.00 0.00 3.91
374 375 3.100862 GAATCCCGCGCTCACTTGC 62.101 63.158 5.56 0.00 0.00 4.01
375 376 1.741401 TGAATCCCGCGCTCACTTG 60.741 57.895 5.56 0.00 0.00 3.16
376 377 1.741770 GTGAATCCCGCGCTCACTT 60.742 57.895 16.83 1.19 37.17 3.16
377 378 2.125512 GTGAATCCCGCGCTCACT 60.126 61.111 16.83 0.00 37.17 3.41
378 379 3.554692 CGTGAATCCCGCGCTCAC 61.555 66.667 14.76 14.76 42.14 3.51
384 385 0.958876 AAAGGGTTCGTGAATCCCGC 60.959 55.000 8.27 0.00 42.60 6.13
385 386 1.199097 CAAAAGGGTTCGTGAATCCCG 59.801 52.381 8.27 0.00 42.60 5.14
386 387 1.067846 GCAAAAGGGTTCGTGAATCCC 60.068 52.381 8.27 9.57 42.60 3.85
387 388 1.611491 TGCAAAAGGGTTCGTGAATCC 59.389 47.619 3.61 3.61 41.93 3.01
388 389 3.363341 TTGCAAAAGGGTTCGTGAATC 57.637 42.857 0.00 0.00 0.00 2.52
389 390 3.492482 CCTTTGCAAAAGGGTTCGTGAAT 60.492 43.478 13.84 0.00 33.79 2.57
390 391 2.159170 CCTTTGCAAAAGGGTTCGTGAA 60.159 45.455 13.84 0.00 33.79 3.18
391 392 1.407258 CCTTTGCAAAAGGGTTCGTGA 59.593 47.619 13.84 0.00 33.79 4.35
392 393 1.851658 CCTTTGCAAAAGGGTTCGTG 58.148 50.000 13.84 0.00 33.79 4.35
399 400 1.071299 GTGCCCCCTTTGCAAAAGG 59.929 57.895 18.41 18.41 41.06 3.11
400 401 0.179936 TTGTGCCCCCTTTGCAAAAG 59.820 50.000 13.84 7.10 41.06 2.27
401 402 0.107459 GTTGTGCCCCCTTTGCAAAA 60.107 50.000 13.84 0.00 41.06 2.44
402 403 1.524482 GTTGTGCCCCCTTTGCAAA 59.476 52.632 12.14 12.14 41.06 3.68
403 404 2.439104 GGTTGTGCCCCCTTTGCAA 61.439 57.895 0.00 0.00 41.06 4.08
404 405 2.841988 GGTTGTGCCCCCTTTGCA 60.842 61.111 0.00 0.00 36.12 4.08
422 423 1.750778 AGCGAGGTTGGCCAAATTATG 59.249 47.619 22.47 10.57 37.19 1.90
423 424 2.143876 AGCGAGGTTGGCCAAATTAT 57.856 45.000 22.47 6.19 37.19 1.28
424 425 1.816224 GAAGCGAGGTTGGCCAAATTA 59.184 47.619 22.47 0.00 37.19 1.40
425 426 0.603065 GAAGCGAGGTTGGCCAAATT 59.397 50.000 22.47 11.60 37.19 1.82
426 427 0.251341 AGAAGCGAGGTTGGCCAAAT 60.251 50.000 22.47 12.48 37.19 2.32
427 428 0.889186 GAGAAGCGAGGTTGGCCAAA 60.889 55.000 22.47 0.85 37.19 3.28
428 429 1.302511 GAGAAGCGAGGTTGGCCAA 60.303 57.895 16.05 16.05 37.19 4.52
429 430 2.347490 GAGAAGCGAGGTTGGCCA 59.653 61.111 0.00 0.00 37.19 5.36
430 431 2.436824 GGAGAAGCGAGGTTGGCC 60.437 66.667 0.00 0.00 0.00 5.36
431 432 1.743252 CTGGAGAAGCGAGGTTGGC 60.743 63.158 0.00 0.00 0.00 4.52
432 433 1.743252 GCTGGAGAAGCGAGGTTGG 60.743 63.158 0.00 0.00 43.45 3.77
433 434 3.882025 GCTGGAGAAGCGAGGTTG 58.118 61.111 0.00 0.00 43.45 3.77
441 442 1.153289 CACGGATGGGCTGGAGAAG 60.153 63.158 0.00 0.00 0.00 2.85
442 443 2.989639 CACGGATGGGCTGGAGAA 59.010 61.111 0.00 0.00 0.00 2.87
443 444 3.785859 GCACGGATGGGCTGGAGA 61.786 66.667 0.00 0.00 0.00 3.71
444 445 3.746949 GAGCACGGATGGGCTGGAG 62.747 68.421 0.00 0.00 41.22 3.86
445 446 3.785859 GAGCACGGATGGGCTGGA 61.786 66.667 0.00 0.00 41.22 3.86
446 447 4.864334 GGAGCACGGATGGGCTGG 62.864 72.222 0.00 0.00 41.22 4.85
449 450 4.899239 CTCGGAGCACGGATGGGC 62.899 72.222 0.00 0.00 44.45 5.36
450 451 3.432051 GACTCGGAGCACGGATGGG 62.432 68.421 4.58 0.00 44.45 4.00
451 452 2.105128 GACTCGGAGCACGGATGG 59.895 66.667 4.58 0.00 44.45 3.51
452 453 1.101635 TAGGACTCGGAGCACGGATG 61.102 60.000 4.58 0.00 44.45 3.51
453 454 0.178987 ATAGGACTCGGAGCACGGAT 60.179 55.000 4.58 0.00 44.45 4.18
454 455 0.395311 AATAGGACTCGGAGCACGGA 60.395 55.000 4.58 0.00 44.45 4.69
455 456 0.460311 AAATAGGACTCGGAGCACGG 59.540 55.000 4.58 0.00 44.45 4.94
456 457 1.927174 CAAAATAGGACTCGGAGCACG 59.073 52.381 4.58 0.00 46.11 5.34
457 458 2.093658 TCCAAAATAGGACTCGGAGCAC 60.094 50.000 4.58 0.00 31.23 4.40
458 459 2.184533 TCCAAAATAGGACTCGGAGCA 58.815 47.619 4.58 0.00 31.23 4.26
459 460 2.981859 TCCAAAATAGGACTCGGAGC 57.018 50.000 4.58 0.00 31.23 4.70
467 468 2.442413 CTTTGCCGGTCCAAAATAGGA 58.558 47.619 1.90 0.00 34.59 2.94
468 469 1.476488 CCTTTGCCGGTCCAAAATAGG 59.524 52.381 1.90 0.00 34.59 2.57
469 470 2.442413 TCCTTTGCCGGTCCAAAATAG 58.558 47.619 1.90 0.00 34.59 1.73
470 471 2.559231 GTTCCTTTGCCGGTCCAAAATA 59.441 45.455 1.90 0.00 34.59 1.40
471 472 1.343142 GTTCCTTTGCCGGTCCAAAAT 59.657 47.619 1.90 0.00 34.59 1.82
472 473 0.747852 GTTCCTTTGCCGGTCCAAAA 59.252 50.000 1.90 0.00 34.59 2.44
473 474 0.106419 AGTTCCTTTGCCGGTCCAAA 60.106 50.000 1.90 5.11 33.93 3.28
474 475 0.106419 AAGTTCCTTTGCCGGTCCAA 60.106 50.000 1.90 0.00 0.00 3.53
475 476 0.536460 GAAGTTCCTTTGCCGGTCCA 60.536 55.000 1.90 0.00 0.00 4.02
476 477 1.574702 CGAAGTTCCTTTGCCGGTCC 61.575 60.000 1.90 0.00 0.00 4.46
477 478 0.601841 TCGAAGTTCCTTTGCCGGTC 60.602 55.000 1.90 0.00 0.00 4.79
478 479 0.179040 TTCGAAGTTCCTTTGCCGGT 60.179 50.000 1.90 0.00 0.00 5.28
479 480 0.517316 CTTCGAAGTTCCTTTGCCGG 59.483 55.000 17.24 0.00 0.00 6.13
480 481 1.226746 ACTTCGAAGTTCCTTTGCCG 58.773 50.000 24.93 0.00 35.21 5.69
495 496 4.201881 CGGGATTAATGAAACGGGAACTTC 60.202 45.833 0.00 0.00 0.00 3.01
514 515 0.389391 TTCAAAATTTTGCCGCGGGA 59.611 45.000 29.38 24.35 38.05 5.14
539 540 2.329379 CCGTCAGTTGAGTACTTCAGC 58.671 52.381 0.00 0.00 37.07 4.26
541 542 1.000506 GGCCGTCAGTTGAGTACTTCA 59.999 52.381 0.00 0.00 33.85 3.02
542 543 1.672145 GGGCCGTCAGTTGAGTACTTC 60.672 57.143 0.00 0.00 33.85 3.01
545 546 0.320697 AAGGGCCGTCAGTTGAGTAC 59.679 55.000 0.00 0.00 0.00 2.73
546 547 0.320374 CAAGGGCCGTCAGTTGAGTA 59.680 55.000 0.00 0.00 0.00 2.59
547 548 1.071471 CAAGGGCCGTCAGTTGAGT 59.929 57.895 0.00 0.00 0.00 3.41
548 549 2.328099 GCAAGGGCCGTCAGTTGAG 61.328 63.158 0.00 0.00 0.00 3.02
549 550 2.281484 GCAAGGGCCGTCAGTTGA 60.281 61.111 0.00 0.00 0.00 3.18
550 551 2.594303 TGCAAGGGCCGTCAGTTG 60.594 61.111 0.00 0.00 40.13 3.16
551 552 2.594592 GTGCAAGGGCCGTCAGTT 60.595 61.111 0.00 0.00 40.13 3.16
552 553 4.643387 GGTGCAAGGGCCGTCAGT 62.643 66.667 0.00 0.00 40.13 3.41
579 580 1.083489 GGAATGGCGTTGAACGATGA 58.917 50.000 23.12 3.99 46.05 2.92
584 585 0.313672 TTGCAGGAATGGCGTTGAAC 59.686 50.000 0.00 0.00 0.00 3.18
636 637 4.400251 AGGGACGTGGGAGGGAGG 62.400 72.222 0.00 0.00 0.00 4.30
637 638 2.760385 GAGGGACGTGGGAGGGAG 60.760 72.222 0.00 0.00 0.00 4.30
638 639 3.596799 TGAGGGACGTGGGAGGGA 61.597 66.667 0.00 0.00 0.00 4.20
655 656 3.633116 CGGTTCGGTCCAAGGGGT 61.633 66.667 0.00 0.00 34.93 4.95
689 691 2.022195 GCATGCATGACTTGGTCAGAT 58.978 47.619 30.64 0.00 46.04 2.90
776 778 4.052229 CGAAGAGACGTGGCCGGT 62.052 66.667 1.90 0.00 38.78 5.28
812 826 3.660571 TGGAGTGCATGGGTGGGG 61.661 66.667 0.00 0.00 0.00 4.96
813 827 2.361610 GTGGAGTGCATGGGTGGG 60.362 66.667 0.00 0.00 0.00 4.61
814 828 2.361610 GGTGGAGTGCATGGGTGG 60.362 66.667 0.00 0.00 0.00 4.61
851 865 2.427812 GGAGCTTATATAGGGTCGGAGC 59.572 54.545 15.38 5.35 31.51 4.70
902 916 1.523154 TTCGCTGTGATTGGGTTGGC 61.523 55.000 0.00 0.00 0.00 4.52
930 947 1.568612 CTGGTAGTGTTGTGCAGCGG 61.569 60.000 0.00 0.00 0.00 5.52
947 964 1.403679 CAGTACCGCCTCTTCTCTCTG 59.596 57.143 0.00 0.00 0.00 3.35
951 968 0.461961 ATGCAGTACCGCCTCTTCTC 59.538 55.000 0.00 0.00 0.00 2.87
959 976 3.264897 CGCTGGATGCAGTACCGC 61.265 66.667 16.22 0.43 43.06 5.68
968 985 2.951745 GTCGAGCGTCGCTGGATG 60.952 66.667 30.39 15.31 44.37 3.51
969 986 3.402691 CTGTCGAGCGTCGCTGGAT 62.403 63.158 30.39 5.77 44.37 3.41
970 987 4.103103 CTGTCGAGCGTCGCTGGA 62.103 66.667 27.16 26.23 40.82 3.86
985 1002 1.511305 CCATGGCTTGCTTGCTCTG 59.489 57.895 0.00 0.91 0.00 3.35
1074 1094 4.349871 GTGAACACACGCGGCGAC 62.350 66.667 30.94 11.01 0.00 5.19
1141 1161 2.361230 GGCCCAGTGGTTGTAGGC 60.361 66.667 8.74 2.63 43.09 3.93
1228 1248 5.344665 CCAACCACATGTAAAAATGTAAGCG 59.655 40.000 0.00 0.00 38.75 4.68
1240 1260 1.348366 ACGTTAGCCCAACCACATGTA 59.652 47.619 0.00 0.00 33.19 2.29
1248 1268 0.162294 CGAACGAACGTTAGCCCAAC 59.838 55.000 12.42 0.00 38.60 3.77
1250 1270 0.595588 TACGAACGAACGTTAGCCCA 59.404 50.000 16.98 3.78 44.14 5.36
1674 1706 4.640690 ACCCACTCCCAGAGCGGT 62.641 66.667 0.00 0.00 30.58 5.68
1729 1761 1.081041 ACACGCACAATGCATGCAG 60.081 52.632 26.69 15.79 40.67 4.41
1777 1809 7.550906 AGTTAAGCAAATGATTCTAGACTGTCC 59.449 37.037 3.76 0.00 0.00 4.02
1861 1918 8.780846 ACAAATCACGACCAAACTATGTAATA 57.219 30.769 0.00 0.00 0.00 0.98
1862 1919 7.681939 ACAAATCACGACCAAACTATGTAAT 57.318 32.000 0.00 0.00 0.00 1.89
1866 1923 7.581476 AGTTAACAAATCACGACCAAACTATG 58.419 34.615 8.61 0.00 0.00 2.23
1867 1924 7.739498 AGTTAACAAATCACGACCAAACTAT 57.261 32.000 8.61 0.00 0.00 2.12
1876 1959 4.768145 CGCAAGAAGTTAACAAATCACGA 58.232 39.130 8.61 0.00 43.02 4.35
1960 2050 0.749649 GGTGGCACCAAAACATGTGA 59.250 50.000 31.26 0.00 38.42 3.58
1986 2076 8.134895 AGAAAATTAAGAGTTTCGTCATTGCAA 58.865 29.630 0.00 0.00 42.85 4.08
2030 2120 8.919145 CCTATACTTCAGTAGAAATCTCCTGTT 58.081 37.037 3.37 0.00 32.52 3.16
2032 2122 7.726291 TCCCTATACTTCAGTAGAAATCTCCTG 59.274 40.741 0.00 0.00 33.52 3.86
2033 2123 7.827787 TCCCTATACTTCAGTAGAAATCTCCT 58.172 38.462 0.00 0.00 33.52 3.69
2034 2124 7.726738 ACTCCCTATACTTCAGTAGAAATCTCC 59.273 40.741 0.00 0.00 33.52 3.71
2038 2128 9.884814 ACATACTCCCTATACTTCAGTAGAAAT 57.115 33.333 0.00 0.00 33.52 2.17
2067 2157 8.227791 CACGTTGCTTATAAGAAGCTAGAAAAA 58.772 33.333 16.85 0.00 43.38 1.94
2074 2164 4.755123 ACAACACGTTGCTTATAAGAAGCT 59.245 37.500 16.85 0.00 44.03 3.74
2160 2250 1.790755 TGGACACGGAATTCTCAACG 58.209 50.000 5.23 2.85 0.00 4.10
2204 2295 1.415200 CTAGGAGTTAGGTCCCCTGC 58.585 60.000 0.00 0.00 37.31 4.85
2206 2297 0.265254 GGCTAGGAGTTAGGTCCCCT 59.735 60.000 0.00 0.00 37.31 4.79
2207 2298 1.114119 CGGCTAGGAGTTAGGTCCCC 61.114 65.000 0.00 0.00 37.31 4.81
2208 2299 1.746322 GCGGCTAGGAGTTAGGTCCC 61.746 65.000 0.00 0.00 37.31 4.46
2209 2300 1.740905 GCGGCTAGGAGTTAGGTCC 59.259 63.158 0.00 0.00 36.79 4.46
2210 2301 0.756070 AGGCGGCTAGGAGTTAGGTC 60.756 60.000 11.03 0.00 0.00 3.85
2211 2302 0.756070 GAGGCGGCTAGGAGTTAGGT 60.756 60.000 13.24 0.00 0.00 3.08
2212 2303 0.468400 AGAGGCGGCTAGGAGTTAGG 60.468 60.000 13.24 0.00 0.00 2.69
2213 2304 1.338655 GAAGAGGCGGCTAGGAGTTAG 59.661 57.143 13.24 0.00 0.00 2.34
2215 2306 1.331399 GGAAGAGGCGGCTAGGAGTT 61.331 60.000 13.24 0.11 0.00 3.01
2216 2307 1.758906 GGAAGAGGCGGCTAGGAGT 60.759 63.158 13.24 0.00 0.00 3.85
2219 2324 2.818132 CTGGAAGAGGCGGCTAGG 59.182 66.667 13.24 0.00 34.07 3.02
2370 2475 4.615513 CTTCCTCCCTTCTCCTTCTTCTA 58.384 47.826 0.00 0.00 0.00 2.10
2626 2733 3.915437 AGGAACCAATGTTAAACGCAG 57.085 42.857 0.00 0.00 33.97 5.18
2663 2770 0.538516 ATAACAGCACGGCCACCAAA 60.539 50.000 2.24 0.00 0.00 3.28
2669 2776 0.108851 CCCAAAATAACAGCACGGCC 60.109 55.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.