Multiple sequence alignment - TraesCS7A01G214900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G214900 chr7A 100.000 6440 0 0 1 6440 180380142 180373703 0.000000e+00 11893.0
1 TraesCS7A01G214900 chr7A 98.731 1970 18 5 1523 3487 180377180 180375213 0.000000e+00 3493.0
2 TraesCS7A01G214900 chr7A 98.731 1970 18 5 2963 4930 180378620 180376656 0.000000e+00 3493.0
3 TraesCS7A01G214900 chr7A 96.518 1522 32 2 1 1522 180170101 180168601 0.000000e+00 2497.0
4 TraesCS7A01G214900 chr7A 94.118 1530 74 6 1 1522 179910530 179909009 0.000000e+00 2313.0
5 TraesCS7A01G214900 chr7A 94.751 1467 55 8 4986 6440 180168601 180167145 0.000000e+00 2263.0
6 TraesCS7A01G214900 chr7A 91.310 1519 118 7 4929 6440 179602276 179600765 0.000000e+00 2061.0
7 TraesCS7A01G214900 chr7A 91.703 1157 68 14 5010 6155 179909000 179907861 0.000000e+00 1580.0
8 TraesCS7A01G214900 chr7A 90.127 942 88 2 2030 2967 60000211 60001151 0.000000e+00 1219.0
9 TraesCS7A01G214900 chr7A 90.021 942 89 2 3468 4405 60000211 60001151 0.000000e+00 1214.0
10 TraesCS7A01G214900 chr7A 93.299 776 37 7 1 776 179603754 179602994 0.000000e+00 1131.0
11 TraesCS7A01G214900 chr7A 93.962 679 39 1 844 1522 179602946 179602270 0.000000e+00 1026.0
12 TraesCS7A01G214900 chr7A 96.987 531 11 4 1523 2049 180375742 180375213 0.000000e+00 887.0
13 TraesCS7A01G214900 chr7A 96.987 531 11 4 4401 4930 180378620 180378094 0.000000e+00 887.0
14 TraesCS7A01G214900 chr7A 83.474 829 76 17 752 1522 178913865 178913040 0.000000e+00 715.0
15 TraesCS7A01G214900 chr7A 83.112 829 79 17 752 1522 178905269 178904444 0.000000e+00 699.0
16 TraesCS7A01G214900 chr7A 85.515 573 72 4 4945 5510 178913024 178912456 7.190000e-164 588.0
17 TraesCS7A01G214900 chr7A 80.343 641 84 23 5502 6134 178912504 178911898 1.270000e-121 448.0
18 TraesCS7A01G214900 chr7A 85.897 312 42 2 6131 6440 178912777 178912466 1.340000e-86 331.0
19 TraesCS7A01G214900 chr7A 85.079 315 37 7 6134 6440 179908817 179908505 4.850000e-81 313.0
20 TraesCS7A01G214900 chr7A 84.887 311 39 5 6136 6440 179602007 179601699 2.260000e-79 307.0
21 TraesCS7A01G214900 chr7A 94.175 103 3 2 4398 4497 720728064 720727962 3.110000e-33 154.0
22 TraesCS7A01G214900 chr7A 94.000 100 6 0 4929 5028 180168607 180168508 1.120000e-32 152.0
23 TraesCS7A01G214900 chr7A 93.204 103 3 1 2960 3058 720728064 720727962 1.450000e-31 148.0
24 TraesCS7A01G214900 chr7D 93.185 1526 77 6 1 1522 176580207 176578705 0.000000e+00 2217.0
25 TraesCS7A01G214900 chr7D 87.778 1530 114 32 4929 6440 176578711 176577237 0.000000e+00 1722.0
26 TraesCS7A01G214900 chr7D 90.127 942 88 2 2030 2967 117244553 117243613 0.000000e+00 1219.0
27 TraesCS7A01G214900 chr7D 90.021 942 89 2 3468 4405 117244553 117243613 0.000000e+00 1214.0
28 TraesCS7A01G214900 chr7D 91.162 792 55 9 1 782 176471592 176470806 0.000000e+00 1061.0
29 TraesCS7A01G214900 chr7D 81.265 1217 161 32 4941 6131 176443549 176442374 0.000000e+00 922.0
30 TraesCS7A01G214900 chr7D 84.824 850 65 21 752 1540 176444390 176443544 0.000000e+00 797.0
31 TraesCS7A01G214900 chr7D 84.190 506 46 12 4 478 176444890 176444388 1.640000e-125 460.0
32 TraesCS7A01G214900 chr7D 84.127 315 43 6 6133 6440 176578446 176578132 1.360000e-76 298.0
33 TraesCS7A01G214900 chr7D 82.090 268 39 6 1658 1920 30810868 30810605 3.020000e-53 220.0
34 TraesCS7A01G214900 chr7D 87.821 156 16 2 5501 5656 176577276 176577124 5.130000e-41 180.0
35 TraesCS7A01G214900 chr7D 95.960 99 2 1 2962 3058 629281484 629281582 6.680000e-35 159.0
36 TraesCS7A01G214900 chr7D 95.960 99 3 1 4400 4497 629281484 629281582 6.680000e-35 159.0
37 TraesCS7A01G214900 chr7D 100.000 34 0 0 5473 5506 176578121 176578088 5.390000e-06 63.9
38 TraesCS7A01G214900 chr6A 79.626 3259 476 139 1636 4776 215020045 215016857 0.000000e+00 2167.0
39 TraesCS7A01G214900 chr6A 79.875 1754 271 62 3074 4769 215020045 215018316 0.000000e+00 1208.0
40 TraesCS7A01G214900 chr7B 90.082 1462 87 18 96 1522 142867687 142866249 0.000000e+00 1844.0
41 TraesCS7A01G214900 chr7B 90.068 1460 86 18 99 1522 143056729 143055293 0.000000e+00 1838.0
42 TraesCS7A01G214900 chr7B 87.823 1470 117 26 4955 6416 142779680 142778265 0.000000e+00 1666.0
43 TraesCS7A01G214900 chr7B 89.118 1259 80 18 309 1522 142781432 142780186 0.000000e+00 1513.0
44 TraesCS7A01G214900 chr7B 92.651 830 51 6 4929 5751 142866255 142865429 0.000000e+00 1186.0
45 TraesCS7A01G214900 chr7B 92.387 775 46 8 4986 5751 143055293 143054523 0.000000e+00 1092.0
46 TraesCS7A01G214900 chr7B 85.042 829 64 21 752 1522 142284418 142283592 0.000000e+00 789.0
47 TraesCS7A01G214900 chr7B 87.500 584 52 8 4941 5510 142283580 142283004 0.000000e+00 654.0
48 TraesCS7A01G214900 chr7B 88.146 329 29 7 1 326 142781693 142781372 3.640000e-102 383.0
49 TraesCS7A01G214900 chr7B 85.714 315 36 6 6133 6440 143055085 143054773 2.240000e-84 324.0
50 TraesCS7A01G214900 chr7B 85.079 315 37 7 6133 6440 142865990 142865679 4.850000e-81 313.0
51 TraesCS7A01G214900 chr7B 84.466 206 30 2 5271 5475 142778469 142778265 1.090000e-47 202.0
52 TraesCS7A01G214900 chr7B 93.548 93 6 0 1 93 142870893 142870801 8.710000e-29 139.0
53 TraesCS7A01G214900 chr7B 98.000 50 0 1 5461 5510 142779126 142779078 1.150000e-12 86.1
54 TraesCS7A01G214900 chr7B 96.000 50 1 1 5461 5510 142865676 142865628 5.350000e-11 80.5
55 TraesCS7A01G214900 chr7B 94.000 50 2 1 5502 5550 142779167 142779118 2.490000e-09 75.0
56 TraesCS7A01G214900 chr3B 90.127 942 88 2 2030 2967 285880 286820 0.000000e+00 1219.0
57 TraesCS7A01G214900 chr3B 90.021 942 89 2 3468 4405 285880 286820 0.000000e+00 1214.0
58 TraesCS7A01G214900 chr3B 90.021 942 89 2 2030 2967 739708593 739709533 0.000000e+00 1214.0
59 TraesCS7A01G214900 chr3B 89.915 942 90 2 3468 4405 739708593 739709533 0.000000e+00 1208.0
60 TraesCS7A01G214900 chr3B 76.180 466 65 32 2905 3352 800173118 800173555 3.040000e-48 204.0
61 TraesCS7A01G214900 chr3B 81.633 245 29 9 4555 4791 800173319 800173555 8.520000e-44 189.0
62 TraesCS7A01G214900 chr2A 90.127 942 88 2 2030 2967 34481826 34482766 0.000000e+00 1219.0
63 TraesCS7A01G214900 chr2A 90.021 942 89 2 3468 4405 34481826 34482766 0.000000e+00 1214.0
64 TraesCS7A01G214900 chr2A 97.297 74 2 0 1976 2049 18460674 18460747 6.780000e-25 126.0
65 TraesCS7A01G214900 chr2A 97.297 74 2 0 3414 3487 18460674 18460747 6.780000e-25 126.0
66 TraesCS7A01G214900 chr2A 97.297 74 2 0 4857 4930 18460674 18460747 6.780000e-25 126.0
67 TraesCS7A01G214900 chr1B 90.021 942 89 2 2030 2967 584095377 584096317 0.000000e+00 1214.0
68 TraesCS7A01G214900 chr1B 89.915 942 90 2 3468 4405 584095377 584096317 0.000000e+00 1208.0
69 TraesCS7A01G214900 chr3A 87.689 1056 105 19 3366 4406 747964579 747963534 0.000000e+00 1206.0
70 TraesCS7A01G214900 chr3A 87.595 1056 106 19 1928 2968 747964579 747963534 0.000000e+00 1201.0
71 TraesCS7A01G214900 chr3A 87.739 1044 103 19 3377 4406 748110052 748109020 0.000000e+00 1195.0
72 TraesCS7A01G214900 chr3A 87.644 1044 104 19 1939 2968 748110052 748109020 0.000000e+00 1190.0
73 TraesCS7A01G214900 chr3A 78.264 1325 247 33 3444 4745 711365118 711363812 0.000000e+00 813.0
74 TraesCS7A01G214900 chr2D 79.705 1764 243 83 1640 3337 298457455 298455741 0.000000e+00 1168.0
75 TraesCS7A01G214900 chr2D 79.082 1831 258 90 3017 4776 298457517 298455741 0.000000e+00 1144.0
76 TraesCS7A01G214900 chr2D 79.056 339 47 19 1579 1899 298456073 298455741 1.820000e-50 211.0
77 TraesCS7A01G214900 chr2D 92.708 96 6 1 662 757 610576039 610576133 3.130000e-28 137.0
78 TraesCS7A01G214900 chr4D 82.271 1365 182 44 1625 2968 506622741 506624066 0.000000e+00 1125.0
79 TraesCS7A01G214900 chr4D 82.025 1363 189 40 3063 4406 506622741 506624066 0.000000e+00 1109.0
80 TraesCS7A01G214900 chr4D 82.119 302 42 8 1625 1920 506630437 506630732 1.390000e-61 248.0
81 TraesCS7A01G214900 chr4D 81.126 302 45 8 3063 3358 506630437 506630732 1.400000e-56 231.0
82 TraesCS7A01G214900 chr4D 81.164 292 45 7 4502 4787 506622741 506623028 6.500000e-55 226.0
83 TraesCS7A01G214900 chr4D 80.464 302 47 8 4502 4797 506630437 506630732 3.020000e-53 220.0
84 TraesCS7A01G214900 chr5A 95.473 486 20 1 2965 3448 701121917 701121432 0.000000e+00 774.0
85 TraesCS7A01G214900 chr5A 95.092 489 21 2 4403 4891 701121917 701121432 0.000000e+00 767.0
86 TraesCS7A01G214900 chr5A 95.082 488 20 2 1525 2010 701121917 701121432 0.000000e+00 765.0
87 TraesCS7A01G214900 chr5A 94.856 486 23 1 2965 3448 701172825 701172340 0.000000e+00 758.0
88 TraesCS7A01G214900 chr5A 94.479 489 24 2 4403 4891 701172825 701172340 0.000000e+00 750.0
89 TraesCS7A01G214900 chr5A 94.467 488 23 2 1525 2010 701172825 701172340 0.000000e+00 749.0
90 TraesCS7A01G214900 chr2B 90.955 199 17 1 475 672 121646957 121646759 3.830000e-67 267.0
91 TraesCS7A01G214900 chr2B 87.387 111 9 1 3394 3504 743352683 743352578 8.770000e-24 122.0
92 TraesCS7A01G214900 chr2B 87.387 111 9 1 1956 2066 743352683 743352578 8.770000e-24 122.0
93 TraesCS7A01G214900 chr2B 87.129 101 7 4 4837 4936 743351584 743351489 6.830000e-20 110.0
94 TraesCS7A01G214900 chr2B 87.234 94 7 1 3394 3487 743351584 743351496 1.140000e-17 102.0
95 TraesCS7A01G214900 chr2B 87.234 94 7 1 1956 2049 743351584 743351496 1.140000e-17 102.0
96 TraesCS7A01G214900 chr2B 86.957 92 7 3 4837 4928 743352683 743352597 1.480000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G214900 chr7A 180373703 180380142 6439 True 11893.000000 11893 100.000000 1 6440 1 chr7A.!!$R2 6439
1 TraesCS7A01G214900 chr7A 180375213 180378620 3407 True 2190.000000 3493 97.859000 1523 4930 4 chr7A.!!$R7 3407
2 TraesCS7A01G214900 chr7A 180167145 180170101 2956 True 1637.333333 2497 95.089667 1 6440 3 chr7A.!!$R6 6439
3 TraesCS7A01G214900 chr7A 179907861 179910530 2669 True 1402.000000 2313 90.300000 1 6440 3 chr7A.!!$R5 6439
4 TraesCS7A01G214900 chr7A 60000211 60001151 940 False 1216.500000 1219 90.074000 2030 4405 2 chr7A.!!$F1 2375
5 TraesCS7A01G214900 chr7A 179600765 179603754 2989 True 1131.250000 2061 90.864500 1 6440 4 chr7A.!!$R4 6439
6 TraesCS7A01G214900 chr7A 178904444 178905269 825 True 699.000000 699 83.112000 752 1522 1 chr7A.!!$R1 770
7 TraesCS7A01G214900 chr7A 178911898 178913865 1967 True 520.500000 715 83.807250 752 6440 4 chr7A.!!$R3 5688
8 TraesCS7A01G214900 chr7D 117243613 117244553 940 True 1216.500000 1219 90.074000 2030 4405 2 chr7D.!!$R3 2375
9 TraesCS7A01G214900 chr7D 176470806 176471592 786 True 1061.000000 1061 91.162000 1 782 1 chr7D.!!$R2 781
10 TraesCS7A01G214900 chr7D 176577124 176580207 3083 True 896.180000 2217 90.582200 1 6440 5 chr7D.!!$R5 6439
11 TraesCS7A01G214900 chr7D 176442374 176444890 2516 True 726.333333 922 83.426333 4 6131 3 chr7D.!!$R4 6127
12 TraesCS7A01G214900 chr6A 215016857 215020045 3188 True 1687.500000 2167 79.750500 1636 4776 2 chr6A.!!$R1 3140
13 TraesCS7A01G214900 chr7B 143054523 143056729 2206 True 1084.666667 1838 89.389667 99 6440 3 chr7B.!!$R4 6341
14 TraesCS7A01G214900 chr7B 142283004 142284418 1414 True 721.500000 789 86.271000 752 5510 2 chr7B.!!$R1 4758
15 TraesCS7A01G214900 chr7B 142865429 142870893 5464 True 712.500000 1844 91.472000 1 6440 5 chr7B.!!$R3 6439
16 TraesCS7A01G214900 chr7B 142778265 142781693 3428 True 654.183333 1666 90.258833 1 6416 6 chr7B.!!$R2 6415
17 TraesCS7A01G214900 chr3B 285880 286820 940 False 1216.500000 1219 90.074000 2030 4405 2 chr3B.!!$F1 2375
18 TraesCS7A01G214900 chr3B 739708593 739709533 940 False 1211.000000 1214 89.968000 2030 4405 2 chr3B.!!$F2 2375
19 TraesCS7A01G214900 chr2A 34481826 34482766 940 False 1216.500000 1219 90.074000 2030 4405 2 chr2A.!!$F2 2375
20 TraesCS7A01G214900 chr1B 584095377 584096317 940 False 1211.000000 1214 89.968000 2030 4405 2 chr1B.!!$F1 2375
21 TraesCS7A01G214900 chr3A 747963534 747964579 1045 True 1203.500000 1206 87.642000 1928 4406 2 chr3A.!!$R2 2478
22 TraesCS7A01G214900 chr3A 748109020 748110052 1032 True 1192.500000 1195 87.691500 1939 4406 2 chr3A.!!$R3 2467
23 TraesCS7A01G214900 chr3A 711363812 711365118 1306 True 813.000000 813 78.264000 3444 4745 1 chr3A.!!$R1 1301
24 TraesCS7A01G214900 chr2D 298455741 298457517 1776 True 841.000000 1168 79.281000 1579 4776 3 chr2D.!!$R1 3197
25 TraesCS7A01G214900 chr4D 506622741 506624066 1325 False 820.000000 1125 81.820000 1625 4787 3 chr4D.!!$F1 3162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 3619 3.186119 GTTGCAGCTTTGTTGCTTTGTA 58.814 40.909 7.78 0.0 41.98 2.41 F
1025 4233 2.854963 AGCAACTTGATCAGAAGCACA 58.145 42.857 12.09 0.0 0.00 4.57 F
1401 4678 1.984570 CCCCTCAGCGTCTTCCTGA 60.985 63.158 0.00 0.0 37.71 3.86 F
4933 9744 1.139058 CGTGGCTTATTCCTACAGGCT 59.861 52.381 0.00 0.0 34.25 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1320 4597 1.369091 ATGTCTTCGGCATTGACGGC 61.369 55.000 12.81 1.18 33.33 5.68 R
4931 9742 2.109181 GTACATCGGGGGCTGAGC 59.891 66.667 0.00 0.00 0.00 4.26 R
5269 10644 1.153939 CGTTGGACGAGCTCTCCTG 60.154 63.158 23.96 14.62 46.05 3.86 R
6193 11656 0.036010 CTCATCGGCACAAGGTCCTT 60.036 55.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 3241 7.037586 AGGTCTTGGTTTAATTCAGTATCTCCA 60.038 37.037 0.00 0.00 0.00 3.86
473 3619 3.186119 GTTGCAGCTTTGTTGCTTTGTA 58.814 40.909 7.78 0.00 41.98 2.41
1012 4220 6.515035 GCCTATTTAACACACTGAAGCAACTT 60.515 38.462 0.00 0.00 0.00 2.66
1018 4226 3.562973 ACACACTGAAGCAACTTGATCAG 59.437 43.478 17.21 17.21 43.79 2.90
1019 4227 3.811497 CACACTGAAGCAACTTGATCAGA 59.189 43.478 22.26 0.00 41.38 3.27
1020 4228 4.274214 CACACTGAAGCAACTTGATCAGAA 59.726 41.667 22.26 0.00 41.38 3.02
1021 4229 4.514441 ACACTGAAGCAACTTGATCAGAAG 59.486 41.667 22.26 17.58 41.38 2.85
1022 4230 3.501445 ACTGAAGCAACTTGATCAGAAGC 59.499 43.478 22.26 0.00 41.38 3.86
1023 4231 3.479489 TGAAGCAACTTGATCAGAAGCA 58.521 40.909 12.09 0.00 0.00 3.91
1024 4232 3.251729 TGAAGCAACTTGATCAGAAGCAC 59.748 43.478 12.09 7.53 0.00 4.40
1025 4233 2.854963 AGCAACTTGATCAGAAGCACA 58.145 42.857 12.09 0.00 0.00 4.57
1401 4678 1.984570 CCCCTCAGCGTCTTCCTGA 60.985 63.158 0.00 0.00 37.71 3.86
4930 9741 1.583054 GCCGTGGCTTATTCCTACAG 58.417 55.000 2.98 0.00 38.26 2.74
4931 9742 1.810412 GCCGTGGCTTATTCCTACAGG 60.810 57.143 2.98 0.00 38.26 4.00
4932 9743 1.583054 CGTGGCTTATTCCTACAGGC 58.417 55.000 0.00 0.00 34.44 4.85
4933 9744 1.139058 CGTGGCTTATTCCTACAGGCT 59.861 52.381 0.00 0.00 34.25 4.58
5007 10310 4.910585 GCCCGTGTATGCTCCCCG 62.911 72.222 0.00 0.00 0.00 5.73
5044 10347 3.984193 GAATCAGGTGCAGCGGCCT 62.984 63.158 11.39 0.00 40.13 5.19
5050 10353 2.436646 GTGCAGCGGCCTGTGTAT 60.437 61.111 6.32 0.00 41.26 2.29
5378 10753 1.690219 CCCGTCCAATCTGGCTAGCT 61.690 60.000 15.72 0.00 37.47 3.32
5533 10912 3.199946 CCTAATGTGGGCTTGTCCTCTAA 59.800 47.826 0.00 0.00 34.39 2.10
5771 11202 5.915196 TCATACGATCTCTCACGCTTAAATG 59.085 40.000 0.00 0.00 0.00 2.32
5785 11236 6.978659 CACGCTTAAATGGAAGTCATACTCTA 59.021 38.462 0.00 0.00 34.44 2.43
5787 11238 8.204836 ACGCTTAAATGGAAGTCATACTCTATT 58.795 33.333 0.00 0.00 34.44 1.73
5861 11316 0.108662 TGGCTCTGTCGCTACATGTG 60.109 55.000 9.11 0.00 34.37 3.21
5888 11343 1.231221 ATGTGCGTCGGTTAGCAAAA 58.769 45.000 0.00 0.00 45.61 2.44
5954 11410 1.718757 GCCGGTGATGACATCTTGCC 61.719 60.000 16.25 13.56 0.00 4.52
5955 11411 0.392863 CCGGTGATGACATCTTGCCA 60.393 55.000 16.25 0.00 0.00 4.92
6048 11504 2.292802 GAAAAGGACATCGTCGCGCC 62.293 60.000 0.00 0.00 32.65 6.53
6049 11507 3.583276 AAAGGACATCGTCGCGCCA 62.583 57.895 0.00 0.00 32.65 5.69
6091 11554 2.430332 CAACTTCCCTTTCAGCAAACCA 59.570 45.455 0.00 0.00 0.00 3.67
6108 11571 0.744057 CCACACATGCATACGCTGGA 60.744 55.000 0.00 0.00 39.64 3.86
6177 11640 3.319198 GGGGAAGGAGTGTCGGCA 61.319 66.667 0.00 0.00 0.00 5.69
6193 11656 1.667830 GCACTGGTAGCAGCAACGA 60.668 57.895 21.58 0.00 0.00 3.85
6349 11812 1.462869 GCGCGCGTTAGTTTATGTGTT 60.463 47.619 32.35 0.00 0.00 3.32
6432 11895 3.157087 CCTAATGTGGGCTTGTTGTCTT 58.843 45.455 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.909423 TGTAATCCCCCTATTTTGAAATCTTT 57.091 30.769 0.00 0.00 0.00 2.52
43 44 7.898014 ACTGTAATCCCCCTATTTTGAAATC 57.102 36.000 0.00 0.00 0.00 2.17
370 3514 7.440523 AGAAAACCTATGAAACTACAAGCAG 57.559 36.000 0.00 0.00 0.00 4.24
473 3619 1.668751 CGCGTTGTACATGCCCTAAAT 59.331 47.619 13.22 0.00 33.21 1.40
1012 4220 1.571955 TAGGGCTGTGCTTCTGATCA 58.428 50.000 0.00 0.00 0.00 2.92
1018 4226 0.609131 TGGCTTTAGGGCTGTGCTTC 60.609 55.000 0.00 0.00 41.48 3.86
1019 4227 0.178964 TTGGCTTTAGGGCTGTGCTT 60.179 50.000 0.00 0.00 41.48 3.91
1020 4228 0.610232 CTTGGCTTTAGGGCTGTGCT 60.610 55.000 0.00 0.00 41.48 4.40
1021 4229 0.895559 ACTTGGCTTTAGGGCTGTGC 60.896 55.000 0.00 0.00 41.48 4.57
1022 4230 0.883833 CACTTGGCTTTAGGGCTGTG 59.116 55.000 0.00 0.00 41.48 3.66
1023 4231 0.895559 GCACTTGGCTTTAGGGCTGT 60.896 55.000 0.00 0.00 38.99 4.40
1024 4232 1.885871 GCACTTGGCTTTAGGGCTG 59.114 57.895 0.00 0.00 38.99 4.85
1025 4233 1.675641 CGCACTTGGCTTTAGGGCT 60.676 57.895 7.32 0.00 39.91 5.19
1247 4524 0.317160 TGAACTCCGACACGCATTCT 59.683 50.000 0.00 0.00 0.00 2.40
1320 4597 1.369091 ATGTCTTCGGCATTGACGGC 61.369 55.000 12.81 1.18 33.33 5.68
1511 4788 2.282040 GCCAACAGAGCCTGCAGT 60.282 61.111 13.81 0.00 34.37 4.40
1521 4798 2.434884 ATCGGACTGCGCCAACAG 60.435 61.111 4.18 0.00 43.59 3.16
4931 9742 2.109181 GTACATCGGGGGCTGAGC 59.891 66.667 0.00 0.00 0.00 4.26
4932 9743 2.417516 CGTACATCGGGGGCTGAG 59.582 66.667 0.00 0.00 35.71 3.35
4933 9744 3.845259 GCGTACATCGGGGGCTGA 61.845 66.667 0.00 0.00 40.26 4.26
5044 10347 2.687200 AGCCGGGGAGCATACACA 60.687 61.111 2.18 0.00 34.23 3.72
5269 10644 1.153939 CGTTGGACGAGCTCTCCTG 60.154 63.158 23.96 14.62 46.05 3.86
5533 10912 8.565896 TCAACAGCAAAGAGTACATGAATTAT 57.434 30.769 0.00 0.00 0.00 1.28
5636 11016 4.335594 ACAGAAGTCGGAAACCTTTTTGAG 59.664 41.667 0.00 0.00 0.00 3.02
5771 11202 8.691661 AGAGAGAGAAATAGAGTATGACTTCC 57.308 38.462 0.00 0.00 0.00 3.46
5861 11316 1.497991 ACCGACGCACATATGTATGC 58.502 50.000 8.32 8.12 37.19 3.14
5888 11343 3.698040 GCTCCAAACTCATTCATGACCAT 59.302 43.478 0.00 0.00 32.50 3.55
5955 11411 3.245052 ACACTTTCCTTTCCAGCTATGCT 60.245 43.478 0.00 0.00 40.77 3.79
6030 11486 2.388232 GGCGCGACGATGTCCTTTT 61.388 57.895 12.10 0.00 0.00 2.27
6048 11504 3.492383 GGTGCAAGTCTATCGATCATGTG 59.508 47.826 0.00 0.00 0.00 3.21
6049 11507 3.132824 TGGTGCAAGTCTATCGATCATGT 59.867 43.478 0.00 0.00 0.00 3.21
6091 11554 0.536724 TCTCCAGCGTATGCATGTGT 59.463 50.000 10.16 0.00 46.23 3.72
6108 11571 4.298332 GGCACACGTTGATTCATTTTTCT 58.702 39.130 0.00 0.00 0.00 2.52
6177 11640 0.320771 CCTTCGTTGCTGCTACCAGT 60.321 55.000 8.57 0.00 41.26 4.00
6179 11642 0.320421 GTCCTTCGTTGCTGCTACCA 60.320 55.000 8.57 0.00 0.00 3.25
6193 11656 0.036010 CTCATCGGCACAAGGTCCTT 60.036 55.000 0.00 0.00 0.00 3.36
6349 11812 3.868077 GGCAAATTTTTACAGCACACACA 59.132 39.130 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.