Multiple sequence alignment - TraesCS7A01G214500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G214500 chr7A 100.000 2897 0 0 1 2897 178914484 178911588 0.000000e+00 5350
1 TraesCS7A01G214500 chr7A 96.932 2705 67 2 194 2897 178905696 178903007 0.000000e+00 4521
2 TraesCS7A01G214500 chr7A 84.672 1233 150 9 796 2024 179602891 179601694 0.000000e+00 1194
3 TraesCS7A01G214500 chr7A 83.836 829 73 23 620 1445 179909779 179909009 0.000000e+00 732
4 TraesCS7A01G214500 chr7A 83.474 829 76 24 620 1445 180379391 180378621 0.000000e+00 715
5 TraesCS7A01G214500 chr7A 85.515 573 72 4 1461 2029 180375198 180374633 3.220000e-164 588
6 TraesCS7A01G214500 chr7A 85.493 517 71 2 1517 2029 180168586 180168070 1.180000e-148 536
7 TraesCS7A01G214500 chr7A 81.029 622 85 17 1987 2582 179601690 179601076 5.650000e-127 464
8 TraesCS7A01G214500 chr7A 84.553 369 42 10 2155 2521 179535025 179534670 4.590000e-93 351
9 TraesCS7A01G214500 chr7A 84.000 375 51 6 2155 2523 179907441 179907070 4.590000e-93 351
10 TraesCS7A01G214500 chr7A 83.740 369 51 7 2157 2523 180166957 180166596 9.940000e-90 340
11 TraesCS7A01G214500 chr7A 97.449 196 5 0 1 196 178949775 178949580 4.630000e-88 335
12 TraesCS7A01G214500 chr7A 82.432 370 49 12 2155 2523 180373517 180373163 2.800000e-80 309
13 TraesCS7A01G214500 chr7A 79.402 301 15 19 620 919 180169350 180169096 4.960000e-38 169
14 TraesCS7A01G214500 chr7B 89.582 2630 236 24 210 2822 142284823 142282215 0.000000e+00 3304
15 TraesCS7A01G214500 chr7B 86.107 1418 142 26 620 2024 142867049 142865674 0.000000e+00 1476
16 TraesCS7A01G214500 chr7B 85.561 935 84 25 620 1544 143056093 143055200 0.000000e+00 931
17 TraesCS7A01G214500 chr7B 87.367 562 67 2 1472 2029 142779679 142779118 2.430000e-180 641
18 TraesCS7A01G214500 chr7B 87.671 511 60 1 1517 2024 143055278 143054768 2.490000e-165 592
19 TraesCS7A01G214500 chr7B 82.899 614 92 9 1981 2587 142779126 142778519 9.130000e-150 540
20 TraesCS7A01G214500 chr7B 80.106 754 124 19 2157 2895 142777777 142777035 3.280000e-149 538
21 TraesCS7A01G214500 chr7B 82.114 246 40 3 1987 2232 142865670 142865429 1.050000e-49 207
22 TraesCS7A01G214500 chr7B 81.781 247 39 5 1987 2232 143054764 143054523 4.890000e-48 202
23 TraesCS7A01G214500 chr7B 86.339 183 17 4 210 389 142781603 142781426 2.950000e-45 193
24 TraesCS7A01G214500 chr7D 91.727 2055 129 23 210 2242 176444802 176442767 0.000000e+00 2815
25 TraesCS7A01G214500 chr7D 84.778 1419 143 34 620 2030 176579474 176578121 0.000000e+00 1356
26 TraesCS7A01G214500 chr7D 86.415 714 78 9 2186 2893 176442776 176442076 0.000000e+00 763
27 TraesCS7A01G214500 chr7D 79.221 616 72 33 1993 2587 176578121 176577541 7.580000e-101 377
28 TraesCS7A01G214500 chr7D 95.192 208 7 3 3 208 478578596 478578390 2.780000e-85 326
29 TraesCS7A01G214500 chr7D 81.840 413 45 14 210 620 176580116 176579732 1.300000e-83 320
30 TraesCS7A01G214500 chr1B 97.938 194 3 1 3 196 407892932 407892740 4.630000e-88 335
31 TraesCS7A01G214500 chr4A 97.917 192 4 0 3 194 725991185 725990994 1.660000e-87 333
32 TraesCS7A01G214500 chr4A 95.545 202 7 2 3 203 696945297 696945497 3.600000e-84 322
33 TraesCS7A01G214500 chr4B 97.423 194 5 0 3 196 23907005 23906812 5.980000e-87 331
34 TraesCS7A01G214500 chr6B 97.423 194 4 1 3 196 660041620 660041428 2.150000e-86 329
35 TraesCS7A01G214500 chr6B 95.567 203 6 3 3 203 511509859 511510060 3.600000e-84 322
36 TraesCS7A01G214500 chr5B 97.423 194 4 1 3 196 37080095 37080287 2.150000e-86 329


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G214500 chr7A 178911588 178914484 2896 True 5350.000000 5350 100.000000 1 2897 1 chr7A.!!$R2 2896
1 TraesCS7A01G214500 chr7A 178903007 178905696 2689 True 4521.000000 4521 96.932000 194 2897 1 chr7A.!!$R1 2703
2 TraesCS7A01G214500 chr7A 179601076 179602891 1815 True 829.000000 1194 82.850500 796 2582 2 chr7A.!!$R5 1786
3 TraesCS7A01G214500 chr7A 179907070 179909779 2709 True 541.500000 732 83.918000 620 2523 2 chr7A.!!$R6 1903
4 TraesCS7A01G214500 chr7A 180373163 180379391 6228 True 537.333333 715 83.807000 620 2523 3 chr7A.!!$R8 1903
5 TraesCS7A01G214500 chr7A 180166596 180169350 2754 True 348.333333 536 82.878333 620 2523 3 chr7A.!!$R7 1903
6 TraesCS7A01G214500 chr7B 142282215 142284823 2608 True 3304.000000 3304 89.582000 210 2822 1 chr7B.!!$R1 2612
7 TraesCS7A01G214500 chr7B 142865429 142867049 1620 True 841.500000 1476 84.110500 620 2232 2 chr7B.!!$R3 1612
8 TraesCS7A01G214500 chr7B 143054523 143056093 1570 True 575.000000 931 85.004333 620 2232 3 chr7B.!!$R4 1612
9 TraesCS7A01G214500 chr7B 142777035 142781603 4568 True 478.000000 641 84.177750 210 2895 4 chr7B.!!$R2 2685
10 TraesCS7A01G214500 chr7D 176442076 176444802 2726 True 1789.000000 2815 89.071000 210 2893 2 chr7D.!!$R2 2683
11 TraesCS7A01G214500 chr7D 176577541 176580116 2575 True 684.333333 1356 81.946333 210 2587 3 chr7D.!!$R3 2377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.041238 ATCTTCCCGTGAGTCCCTGA 59.959 55.0 0.0 0.0 0.0 3.86 F
138 139 0.041238 TCCCGTGAGTCCCTGATCTT 59.959 55.0 0.0 0.0 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 6067 0.107459 CTCCTCCTTTGCTGCTACCC 60.107 60.0 0.0 0.0 0.00 3.69 R
2123 6501 0.320374 ACGATGCTGAGGTCGGAAAA 59.680 50.0 0.0 0.0 41.87 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.000815 TGGTTGCTTCCGTTGACTC 57.999 52.632 0.00 0.00 0.00 3.36
19 20 0.878523 TGGTTGCTTCCGTTGACTCG 60.879 55.000 0.00 0.00 0.00 4.18
20 21 0.878961 GGTTGCTTCCGTTGACTCGT 60.879 55.000 0.00 0.00 0.00 4.18
21 22 0.507358 GTTGCTTCCGTTGACTCGTC 59.493 55.000 0.00 0.00 0.00 4.20
22 23 0.387929 TTGCTTCCGTTGACTCGTCT 59.612 50.000 0.00 0.00 0.00 4.18
23 24 1.241165 TGCTTCCGTTGACTCGTCTA 58.759 50.000 0.00 0.00 0.00 2.59
24 25 1.816835 TGCTTCCGTTGACTCGTCTAT 59.183 47.619 0.00 0.00 0.00 1.98
25 26 2.186076 GCTTCCGTTGACTCGTCTATG 58.814 52.381 0.00 0.00 0.00 2.23
26 27 2.159421 GCTTCCGTTGACTCGTCTATGA 60.159 50.000 2.93 0.00 0.00 2.15
27 28 3.489398 GCTTCCGTTGACTCGTCTATGAT 60.489 47.826 2.93 0.00 0.00 2.45
28 29 3.965292 TCCGTTGACTCGTCTATGATC 57.035 47.619 2.93 0.00 0.00 2.92
29 30 2.287103 TCCGTTGACTCGTCTATGATCG 59.713 50.000 2.93 0.00 0.00 3.69
30 31 2.287103 CCGTTGACTCGTCTATGATCGA 59.713 50.000 0.00 0.00 34.88 3.59
36 37 3.617540 CTCGTCTATGATCGAGCACTT 57.382 47.619 5.03 0.00 44.82 3.16
37 38 3.295785 CTCGTCTATGATCGAGCACTTG 58.704 50.000 5.03 0.00 44.82 3.16
38 39 2.683362 TCGTCTATGATCGAGCACTTGT 59.317 45.455 5.03 0.00 0.00 3.16
39 40 3.875134 TCGTCTATGATCGAGCACTTGTA 59.125 43.478 5.03 0.00 0.00 2.41
40 41 4.515567 TCGTCTATGATCGAGCACTTGTAT 59.484 41.667 5.03 0.00 0.00 2.29
41 42 5.008712 TCGTCTATGATCGAGCACTTGTATT 59.991 40.000 5.03 0.00 0.00 1.89
42 43 5.340932 CGTCTATGATCGAGCACTTGTATTC 59.659 44.000 5.03 0.00 0.00 1.75
43 44 5.340932 GTCTATGATCGAGCACTTGTATTCG 59.659 44.000 5.03 0.00 34.56 3.34
44 45 3.775661 TGATCGAGCACTTGTATTCGA 57.224 42.857 0.00 9.86 44.88 3.71
45 46 3.695816 TGATCGAGCACTTGTATTCGAG 58.304 45.455 0.00 0.00 44.14 4.04
46 47 1.909376 TCGAGCACTTGTATTCGAGC 58.091 50.000 5.19 0.00 37.18 5.03
47 48 0.924090 CGAGCACTTGTATTCGAGCC 59.076 55.000 0.00 0.00 35.19 4.70
48 49 1.291132 GAGCACTTGTATTCGAGCCC 58.709 55.000 0.00 0.00 0.00 5.19
49 50 0.905357 AGCACTTGTATTCGAGCCCT 59.095 50.000 0.00 0.00 0.00 5.19
50 51 1.134670 AGCACTTGTATTCGAGCCCTC 60.135 52.381 0.00 0.00 0.00 4.30
73 74 2.656947 GCCCCTGGCTTGTATTATGA 57.343 50.000 0.00 0.00 46.69 2.15
74 75 3.160679 GCCCCTGGCTTGTATTATGAT 57.839 47.619 0.00 0.00 46.69 2.45
75 76 2.821969 GCCCCTGGCTTGTATTATGATG 59.178 50.000 0.00 0.00 46.69 3.07
76 77 2.821969 CCCCTGGCTTGTATTATGATGC 59.178 50.000 0.00 0.00 0.00 3.91
77 78 3.499202 CCCCTGGCTTGTATTATGATGCT 60.499 47.826 0.00 0.00 0.00 3.79
78 79 4.147321 CCCTGGCTTGTATTATGATGCTT 58.853 43.478 0.00 0.00 0.00 3.91
79 80 4.022589 CCCTGGCTTGTATTATGATGCTTG 60.023 45.833 0.00 0.00 0.00 4.01
80 81 4.581824 CCTGGCTTGTATTATGATGCTTGT 59.418 41.667 0.00 0.00 0.00 3.16
81 82 5.764686 CCTGGCTTGTATTATGATGCTTGTA 59.235 40.000 0.00 0.00 0.00 2.41
82 83 6.432162 CCTGGCTTGTATTATGATGCTTGTAT 59.568 38.462 0.00 0.00 0.00 2.29
83 84 7.205737 TGGCTTGTATTATGATGCTTGTATG 57.794 36.000 0.00 0.00 0.00 2.39
84 85 6.997476 TGGCTTGTATTATGATGCTTGTATGA 59.003 34.615 0.00 0.00 0.00 2.15
85 86 7.041167 TGGCTTGTATTATGATGCTTGTATGAC 60.041 37.037 0.00 0.00 0.00 3.06
86 87 7.173907 GGCTTGTATTATGATGCTTGTATGACT 59.826 37.037 0.00 0.00 0.00 3.41
87 88 8.562892 GCTTGTATTATGATGCTTGTATGACTT 58.437 33.333 0.00 0.00 0.00 3.01
95 96 7.019774 TGATGCTTGTATGACTTATTCTTGC 57.980 36.000 0.00 0.00 0.00 4.01
96 97 6.598850 TGATGCTTGTATGACTTATTCTTGCA 59.401 34.615 0.00 0.00 0.00 4.08
97 98 7.283807 TGATGCTTGTATGACTTATTCTTGCAT 59.716 33.333 0.00 0.00 38.67 3.96
98 99 7.395190 TGCTTGTATGACTTATTCTTGCATT 57.605 32.000 0.00 0.00 0.00 3.56
99 100 8.504812 TGCTTGTATGACTTATTCTTGCATTA 57.495 30.769 0.00 0.00 0.00 1.90
100 101 8.615211 TGCTTGTATGACTTATTCTTGCATTAG 58.385 33.333 0.00 0.00 0.00 1.73
101 102 8.830580 GCTTGTATGACTTATTCTTGCATTAGA 58.169 33.333 0.00 0.00 0.00 2.10
103 104 9.890629 TTGTATGACTTATTCTTGCATTAGAGT 57.109 29.630 0.00 0.00 0.00 3.24
104 105 9.890629 TGTATGACTTATTCTTGCATTAGAGTT 57.109 29.630 0.00 0.00 0.00 3.01
106 107 8.798859 ATGACTTATTCTTGCATTAGAGTTGT 57.201 30.769 0.00 0.00 0.00 3.32
107 108 8.032952 TGACTTATTCTTGCATTAGAGTTGTG 57.967 34.615 0.00 0.00 0.00 3.33
108 109 7.661437 TGACTTATTCTTGCATTAGAGTTGTGT 59.339 33.333 0.00 0.00 0.00 3.72
109 110 8.396272 ACTTATTCTTGCATTAGAGTTGTGTT 57.604 30.769 0.00 0.00 0.00 3.32
110 111 8.292448 ACTTATTCTTGCATTAGAGTTGTGTTG 58.708 33.333 0.00 0.00 0.00 3.33
111 112 6.639632 ATTCTTGCATTAGAGTTGTGTTGT 57.360 33.333 0.00 0.00 0.00 3.32
112 113 5.422666 TCTTGCATTAGAGTTGTGTTGTG 57.577 39.130 0.00 0.00 0.00 3.33
113 114 5.122519 TCTTGCATTAGAGTTGTGTTGTGA 58.877 37.500 0.00 0.00 0.00 3.58
114 115 5.764686 TCTTGCATTAGAGTTGTGTTGTGAT 59.235 36.000 0.00 0.00 0.00 3.06
115 116 6.934083 TCTTGCATTAGAGTTGTGTTGTGATA 59.066 34.615 0.00 0.00 0.00 2.15
116 117 7.607607 TCTTGCATTAGAGTTGTGTTGTGATAT 59.392 33.333 0.00 0.00 0.00 1.63
117 118 7.307493 TGCATTAGAGTTGTGTTGTGATATC 57.693 36.000 0.00 0.00 0.00 1.63
118 119 7.105588 TGCATTAGAGTTGTGTTGTGATATCT 58.894 34.615 3.98 0.00 0.00 1.98
119 120 7.607607 TGCATTAGAGTTGTGTTGTGATATCTT 59.392 33.333 3.98 0.00 0.00 2.40
120 121 8.119226 GCATTAGAGTTGTGTTGTGATATCTTC 58.881 37.037 3.98 0.00 0.00 2.87
121 122 8.607459 CATTAGAGTTGTGTTGTGATATCTTCC 58.393 37.037 3.98 0.00 0.00 3.46
122 123 5.491982 AGAGTTGTGTTGTGATATCTTCCC 58.508 41.667 3.98 0.00 0.00 3.97
123 124 4.253685 AGTTGTGTTGTGATATCTTCCCG 58.746 43.478 3.98 0.00 0.00 5.14
124 125 3.973206 TGTGTTGTGATATCTTCCCGT 57.027 42.857 3.98 0.00 0.00 5.28
125 126 3.595173 TGTGTTGTGATATCTTCCCGTG 58.405 45.455 3.98 0.00 0.00 4.94
126 127 3.259625 TGTGTTGTGATATCTTCCCGTGA 59.740 43.478 3.98 0.00 0.00 4.35
127 128 3.865745 GTGTTGTGATATCTTCCCGTGAG 59.134 47.826 3.98 0.00 0.00 3.51
128 129 3.513912 TGTTGTGATATCTTCCCGTGAGT 59.486 43.478 3.98 0.00 0.00 3.41
129 130 4.113354 GTTGTGATATCTTCCCGTGAGTC 58.887 47.826 3.98 0.00 0.00 3.36
130 131 2.693591 TGTGATATCTTCCCGTGAGTCC 59.306 50.000 3.98 0.00 0.00 3.85
131 132 2.036089 GTGATATCTTCCCGTGAGTCCC 59.964 54.545 3.98 0.00 0.00 4.46
132 133 2.091278 TGATATCTTCCCGTGAGTCCCT 60.091 50.000 3.98 0.00 0.00 4.20
133 134 1.776662 TATCTTCCCGTGAGTCCCTG 58.223 55.000 0.00 0.00 0.00 4.45
134 135 0.041238 ATCTTCCCGTGAGTCCCTGA 59.959 55.000 0.00 0.00 0.00 3.86
135 136 0.041238 TCTTCCCGTGAGTCCCTGAT 59.959 55.000 0.00 0.00 0.00 2.90
136 137 0.461961 CTTCCCGTGAGTCCCTGATC 59.538 60.000 0.00 0.00 0.00 2.92
137 138 0.041238 TTCCCGTGAGTCCCTGATCT 59.959 55.000 0.00 0.00 0.00 2.75
138 139 0.041238 TCCCGTGAGTCCCTGATCTT 59.959 55.000 0.00 0.00 0.00 2.40
139 140 0.176680 CCCGTGAGTCCCTGATCTTG 59.823 60.000 0.00 0.00 0.00 3.02
140 141 1.186200 CCGTGAGTCCCTGATCTTGA 58.814 55.000 0.00 0.00 0.00 3.02
141 142 1.759445 CCGTGAGTCCCTGATCTTGAT 59.241 52.381 0.00 0.00 0.00 2.57
142 143 2.223923 CCGTGAGTCCCTGATCTTGATC 60.224 54.545 3.82 3.82 0.00 2.92
143 144 2.542618 CGTGAGTCCCTGATCTTGATCG 60.543 54.545 6.19 2.03 0.00 3.69
144 145 2.428890 GTGAGTCCCTGATCTTGATCGT 59.571 50.000 6.19 0.00 0.00 3.73
145 146 3.632604 GTGAGTCCCTGATCTTGATCGTA 59.367 47.826 6.19 0.00 0.00 3.43
146 147 3.632604 TGAGTCCCTGATCTTGATCGTAC 59.367 47.826 6.19 2.53 0.00 3.67
147 148 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
148 149 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
149 150 2.357952 TCCCTGATCTTGATCGTACACG 59.642 50.000 6.19 0.00 41.45 4.49
150 151 2.099263 CCCTGATCTTGATCGTACACGT 59.901 50.000 1.19 0.00 40.80 4.49
151 152 3.428999 CCCTGATCTTGATCGTACACGTT 60.429 47.826 1.19 0.00 40.80 3.99
152 153 4.174009 CCTGATCTTGATCGTACACGTTT 58.826 43.478 1.19 0.00 40.80 3.60
153 154 4.031765 CCTGATCTTGATCGTACACGTTTG 59.968 45.833 1.19 0.00 40.80 2.93
154 155 3.366724 TGATCTTGATCGTACACGTTTGC 59.633 43.478 1.19 0.00 40.80 3.68
155 156 1.717113 TCTTGATCGTACACGTTTGCG 59.283 47.619 5.81 5.81 44.93 4.85
169 170 4.577687 CGTTTGCGTGTATGATTAGTGT 57.422 40.909 0.00 0.00 0.00 3.55
170 171 5.689927 CGTTTGCGTGTATGATTAGTGTA 57.310 39.130 0.00 0.00 0.00 2.90
171 172 6.268797 CGTTTGCGTGTATGATTAGTGTAT 57.731 37.500 0.00 0.00 0.00 2.29
172 173 6.120157 CGTTTGCGTGTATGATTAGTGTATG 58.880 40.000 0.00 0.00 0.00 2.39
173 174 6.020201 CGTTTGCGTGTATGATTAGTGTATGA 60.020 38.462 0.00 0.00 0.00 2.15
174 175 7.306574 CGTTTGCGTGTATGATTAGTGTATGAT 60.307 37.037 0.00 0.00 0.00 2.45
175 176 8.335356 GTTTGCGTGTATGATTAGTGTATGATT 58.665 33.333 0.00 0.00 0.00 2.57
176 177 7.406799 TGCGTGTATGATTAGTGTATGATTG 57.593 36.000 0.00 0.00 0.00 2.67
177 178 7.206687 TGCGTGTATGATTAGTGTATGATTGA 58.793 34.615 0.00 0.00 0.00 2.57
178 179 7.708752 TGCGTGTATGATTAGTGTATGATTGAA 59.291 33.333 0.00 0.00 0.00 2.69
179 180 8.712363 GCGTGTATGATTAGTGTATGATTGAAT 58.288 33.333 0.00 0.00 0.00 2.57
182 183 9.423061 TGTATGATTAGTGTATGATTGAATCGG 57.577 33.333 0.18 0.00 0.00 4.18
183 184 7.912056 ATGATTAGTGTATGATTGAATCGGG 57.088 36.000 0.18 0.00 0.00 5.14
184 185 6.230472 TGATTAGTGTATGATTGAATCGGGG 58.770 40.000 0.18 0.00 0.00 5.73
185 186 3.492102 AGTGTATGATTGAATCGGGGG 57.508 47.619 0.18 0.00 0.00 5.40
186 187 1.880027 GTGTATGATTGAATCGGGGGC 59.120 52.381 0.18 0.00 0.00 5.80
187 188 1.156736 GTATGATTGAATCGGGGGCG 58.843 55.000 0.18 0.00 0.00 6.13
188 189 0.762418 TATGATTGAATCGGGGGCGT 59.238 50.000 0.18 0.00 0.00 5.68
189 190 0.535102 ATGATTGAATCGGGGGCGTC 60.535 55.000 0.18 0.00 0.00 5.19
190 191 1.153249 GATTGAATCGGGGGCGTCA 60.153 57.895 0.00 0.00 0.00 4.35
191 192 1.436983 GATTGAATCGGGGGCGTCAC 61.437 60.000 0.00 0.00 0.00 3.67
192 193 2.191786 ATTGAATCGGGGGCGTCACA 62.192 55.000 0.00 0.00 0.00 3.58
193 194 2.046700 GAATCGGGGGCGTCACAA 60.047 61.111 0.00 0.00 0.00 3.33
194 195 2.046314 AATCGGGGGCGTCACAAG 60.046 61.111 0.00 0.00 0.00 3.16
195 196 2.798148 GAATCGGGGGCGTCACAAGT 62.798 60.000 0.00 0.00 0.00 3.16
196 197 3.605749 ATCGGGGGCGTCACAAGTG 62.606 63.158 0.00 0.00 0.00 3.16
794 1094 9.383519 ACATGAGTACATTATCTGTTAAAGGTG 57.616 33.333 0.00 0.00 39.39 4.00
868 1185 0.110056 CACAAAGCACAGCTAAGCCG 60.110 55.000 5.99 0.00 38.25 5.52
1164 1511 3.119096 GACGACGCCAAGGAAGCC 61.119 66.667 0.00 0.00 0.00 4.35
1300 1647 0.518636 CCTCGGTTTCGACGACTACA 59.481 55.000 0.00 0.00 40.88 2.74
1458 5218 0.684479 AGGCTCAGATACAGCGTCCA 60.684 55.000 0.00 0.00 37.81 4.02
1548 5794 1.586422 CGATGCCGGTTCAGAATCAT 58.414 50.000 1.90 0.00 0.00 2.45
1758 6067 3.475774 GAAGGTGCGTACGGTGCG 61.476 66.667 18.39 14.38 34.24 5.34
1893 6205 0.110486 ACAAGCCCGTTCAATCTGGT 59.890 50.000 0.00 0.00 0.00 4.00
2066 6443 5.472148 TCGTCGCTTAATTTGGTTTCTCTA 58.528 37.500 0.00 0.00 0.00 2.43
2123 6501 4.964593 AGCTGCATTTGTTTCCAAAAGAT 58.035 34.783 1.02 0.00 43.43 2.40
2329 7979 3.219052 TGTACGTTCATATGTGCGTCA 57.781 42.857 22.78 18.36 38.56 4.35
2397 8974 2.657297 GCCTTTGGCCTGTGATGAA 58.343 52.632 3.32 0.00 44.06 2.57
2572 9150 3.258123 GCATACACAGGGGAAAAACACAT 59.742 43.478 0.00 0.00 0.00 3.21
2637 9216 1.412606 GCTTTGTCTTCGTCGCTCG 59.587 57.895 0.00 0.00 41.41 5.03
2678 9258 1.471119 CACTGGGCTCTTGCATCATT 58.529 50.000 0.00 0.00 41.91 2.57
2680 9260 1.284198 ACTGGGCTCTTGCATCATTCT 59.716 47.619 0.00 0.00 41.91 2.40
2767 9351 1.529010 TCGCATGATCCATTGCCCC 60.529 57.895 0.00 0.00 0.00 5.80
2812 9398 1.257936 CCATTCAGCCGTTCGTTATCG 59.742 52.381 0.00 0.00 38.55 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.878523 CGAGTCAACGGAAGCAACCA 60.879 55.000 0.00 0.00 0.00 3.67
2 3 0.507358 GACGAGTCAACGGAAGCAAC 59.493 55.000 0.00 0.00 37.61 4.17
3 4 0.387929 AGACGAGTCAACGGAAGCAA 59.612 50.000 5.99 0.00 37.61 3.91
4 5 1.241165 TAGACGAGTCAACGGAAGCA 58.759 50.000 5.99 0.00 37.61 3.91
5 6 2.159421 TCATAGACGAGTCAACGGAAGC 60.159 50.000 5.99 0.00 37.61 3.86
6 7 3.759527 TCATAGACGAGTCAACGGAAG 57.240 47.619 5.99 0.00 37.61 3.46
7 8 3.242641 CGATCATAGACGAGTCAACGGAA 60.243 47.826 5.99 0.00 37.61 4.30
8 9 2.287103 CGATCATAGACGAGTCAACGGA 59.713 50.000 5.99 0.00 37.61 4.69
9 10 2.287103 TCGATCATAGACGAGTCAACGG 59.713 50.000 5.99 0.00 37.61 4.44
10 11 3.536833 CTCGATCATAGACGAGTCAACG 58.463 50.000 5.99 0.00 46.90 4.10
17 18 2.683362 ACAAGTGCTCGATCATAGACGA 59.317 45.455 0.00 0.00 37.03 4.20
18 19 3.071786 ACAAGTGCTCGATCATAGACG 57.928 47.619 0.00 0.00 0.00 4.18
19 20 5.340932 CGAATACAAGTGCTCGATCATAGAC 59.659 44.000 0.00 0.00 33.13 2.59
20 21 5.238650 TCGAATACAAGTGCTCGATCATAGA 59.761 40.000 0.00 0.00 35.52 1.98
21 22 5.452777 TCGAATACAAGTGCTCGATCATAG 58.547 41.667 0.00 0.00 35.52 2.23
22 23 5.432885 TCGAATACAAGTGCTCGATCATA 57.567 39.130 0.00 0.00 35.52 2.15
23 24 4.294232 CTCGAATACAAGTGCTCGATCAT 58.706 43.478 8.31 0.00 39.39 2.45
24 25 3.695816 CTCGAATACAAGTGCTCGATCA 58.304 45.455 8.31 0.00 39.39 2.92
25 26 2.469516 GCTCGAATACAAGTGCTCGATC 59.530 50.000 8.31 2.80 39.39 3.69
26 27 2.464865 GCTCGAATACAAGTGCTCGAT 58.535 47.619 8.31 0.00 39.39 3.59
27 28 1.469251 GGCTCGAATACAAGTGCTCGA 60.469 52.381 7.80 7.80 37.95 4.04
28 29 0.924090 GGCTCGAATACAAGTGCTCG 59.076 55.000 0.00 0.00 0.00 5.03
29 30 1.134670 AGGGCTCGAATACAAGTGCTC 60.135 52.381 0.00 0.00 0.00 4.26
30 31 0.905357 AGGGCTCGAATACAAGTGCT 59.095 50.000 0.00 0.00 0.00 4.40
31 32 1.291132 GAGGGCTCGAATACAAGTGC 58.709 55.000 0.00 0.00 0.00 4.40
55 56 2.821969 GCATCATAATACAAGCCAGGGG 59.178 50.000 0.00 0.00 0.00 4.79
56 57 3.759581 AGCATCATAATACAAGCCAGGG 58.240 45.455 0.00 0.00 0.00 4.45
57 58 4.581824 ACAAGCATCATAATACAAGCCAGG 59.418 41.667 0.00 0.00 0.00 4.45
58 59 5.762825 ACAAGCATCATAATACAAGCCAG 57.237 39.130 0.00 0.00 0.00 4.85
59 60 6.997476 TCATACAAGCATCATAATACAAGCCA 59.003 34.615 0.00 0.00 0.00 4.75
60 61 7.173907 AGTCATACAAGCATCATAATACAAGCC 59.826 37.037 0.00 0.00 0.00 4.35
61 62 8.092521 AGTCATACAAGCATCATAATACAAGC 57.907 34.615 0.00 0.00 0.00 4.01
69 70 8.777413 GCAAGAATAAGTCATACAAGCATCATA 58.223 33.333 0.00 0.00 0.00 2.15
70 71 7.283807 TGCAAGAATAAGTCATACAAGCATCAT 59.716 33.333 0.00 0.00 0.00 2.45
71 72 6.598850 TGCAAGAATAAGTCATACAAGCATCA 59.401 34.615 0.00 0.00 0.00 3.07
72 73 7.019774 TGCAAGAATAAGTCATACAAGCATC 57.980 36.000 0.00 0.00 0.00 3.91
73 74 7.578310 ATGCAAGAATAAGTCATACAAGCAT 57.422 32.000 0.00 0.00 33.48 3.79
74 75 7.395190 AATGCAAGAATAAGTCATACAAGCA 57.605 32.000 0.00 0.00 0.00 3.91
75 76 8.830580 TCTAATGCAAGAATAAGTCATACAAGC 58.169 33.333 0.00 0.00 0.00 4.01
77 78 9.890629 ACTCTAATGCAAGAATAAGTCATACAA 57.109 29.630 0.00 0.00 0.00 2.41
78 79 9.890629 AACTCTAATGCAAGAATAAGTCATACA 57.109 29.630 0.00 0.00 0.00 2.29
80 81 9.890629 ACAACTCTAATGCAAGAATAAGTCATA 57.109 29.630 0.00 0.00 0.00 2.15
81 82 8.671921 CACAACTCTAATGCAAGAATAAGTCAT 58.328 33.333 0.00 0.00 0.00 3.06
82 83 7.661437 ACACAACTCTAATGCAAGAATAAGTCA 59.339 33.333 0.00 0.00 0.00 3.41
83 84 8.034058 ACACAACTCTAATGCAAGAATAAGTC 57.966 34.615 0.00 0.00 0.00 3.01
84 85 7.986085 ACACAACTCTAATGCAAGAATAAGT 57.014 32.000 0.00 0.00 0.00 2.24
85 86 8.292448 ACAACACAACTCTAATGCAAGAATAAG 58.708 33.333 0.00 0.00 0.00 1.73
86 87 8.075574 CACAACACAACTCTAATGCAAGAATAA 58.924 33.333 0.00 0.00 0.00 1.40
87 88 7.443879 TCACAACACAACTCTAATGCAAGAATA 59.556 33.333 0.00 0.00 0.00 1.75
88 89 6.262944 TCACAACACAACTCTAATGCAAGAAT 59.737 34.615 0.00 0.00 0.00 2.40
89 90 5.588246 TCACAACACAACTCTAATGCAAGAA 59.412 36.000 0.00 0.00 0.00 2.52
90 91 5.122519 TCACAACACAACTCTAATGCAAGA 58.877 37.500 0.00 0.00 0.00 3.02
91 92 5.422666 TCACAACACAACTCTAATGCAAG 57.577 39.130 0.00 0.00 0.00 4.01
92 93 7.607607 AGATATCACAACACAACTCTAATGCAA 59.392 33.333 5.32 0.00 0.00 4.08
93 94 7.105588 AGATATCACAACACAACTCTAATGCA 58.894 34.615 5.32 0.00 0.00 3.96
94 95 7.545362 AGATATCACAACACAACTCTAATGC 57.455 36.000 5.32 0.00 0.00 3.56
95 96 8.607459 GGAAGATATCACAACACAACTCTAATG 58.393 37.037 5.32 0.00 0.00 1.90
96 97 7.770897 GGGAAGATATCACAACACAACTCTAAT 59.229 37.037 5.32 0.00 0.00 1.73
97 98 7.103641 GGGAAGATATCACAACACAACTCTAA 58.896 38.462 5.32 0.00 0.00 2.10
98 99 6.627287 CGGGAAGATATCACAACACAACTCTA 60.627 42.308 5.32 0.00 0.00 2.43
99 100 5.491982 GGGAAGATATCACAACACAACTCT 58.508 41.667 5.32 0.00 0.00 3.24
100 101 4.330074 CGGGAAGATATCACAACACAACTC 59.670 45.833 5.32 0.00 0.00 3.01
101 102 4.253685 CGGGAAGATATCACAACACAACT 58.746 43.478 5.32 0.00 0.00 3.16
102 103 4.000988 ACGGGAAGATATCACAACACAAC 58.999 43.478 5.32 0.00 0.00 3.32
103 104 4.000325 CACGGGAAGATATCACAACACAA 59.000 43.478 5.32 0.00 0.00 3.33
104 105 3.259625 TCACGGGAAGATATCACAACACA 59.740 43.478 5.32 0.00 0.00 3.72
105 106 3.857052 TCACGGGAAGATATCACAACAC 58.143 45.455 5.32 0.00 0.00 3.32
106 107 3.513912 ACTCACGGGAAGATATCACAACA 59.486 43.478 5.32 0.00 0.00 3.33
107 108 4.113354 GACTCACGGGAAGATATCACAAC 58.887 47.826 5.32 0.00 0.00 3.32
108 109 3.132289 GGACTCACGGGAAGATATCACAA 59.868 47.826 5.32 0.00 0.00 3.33
109 110 2.693591 GGACTCACGGGAAGATATCACA 59.306 50.000 5.32 0.00 0.00 3.58
110 111 2.036089 GGGACTCACGGGAAGATATCAC 59.964 54.545 5.32 0.00 0.00 3.06
111 112 2.091278 AGGGACTCACGGGAAGATATCA 60.091 50.000 5.32 0.00 0.00 2.15
112 113 2.297597 CAGGGACTCACGGGAAGATATC 59.702 54.545 0.00 0.00 34.60 1.63
113 114 2.091278 TCAGGGACTCACGGGAAGATAT 60.091 50.000 0.00 0.00 34.60 1.63
114 115 1.286849 TCAGGGACTCACGGGAAGATA 59.713 52.381 0.00 0.00 34.60 1.98
115 116 0.041238 TCAGGGACTCACGGGAAGAT 59.959 55.000 0.00 0.00 34.60 2.40
116 117 0.041238 ATCAGGGACTCACGGGAAGA 59.959 55.000 0.00 0.00 34.60 2.87
117 118 0.461961 GATCAGGGACTCACGGGAAG 59.538 60.000 0.00 0.00 34.60 3.46
118 119 0.041238 AGATCAGGGACTCACGGGAA 59.959 55.000 0.00 0.00 34.60 3.97
119 120 0.041238 AAGATCAGGGACTCACGGGA 59.959 55.000 0.00 0.00 34.60 5.14
120 121 0.176680 CAAGATCAGGGACTCACGGG 59.823 60.000 0.00 0.00 34.60 5.28
121 122 1.186200 TCAAGATCAGGGACTCACGG 58.814 55.000 0.00 0.00 34.60 4.94
122 123 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
123 124 2.428890 ACGATCAAGATCAGGGACTCAC 59.571 50.000 10.39 0.00 34.60 3.51
124 125 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
125 126 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
126 127 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
127 128 3.707793 GTGTACGATCAAGATCAGGGAC 58.292 50.000 10.39 2.84 37.69 4.46
128 129 2.357952 CGTGTACGATCAAGATCAGGGA 59.642 50.000 10.39 0.00 43.02 4.20
129 130 2.099263 ACGTGTACGATCAAGATCAGGG 59.901 50.000 11.79 0.00 43.02 4.45
130 131 3.422417 ACGTGTACGATCAAGATCAGG 57.578 47.619 11.79 0.51 43.02 3.86
131 132 4.490959 GCAAACGTGTACGATCAAGATCAG 60.491 45.833 11.79 5.82 43.02 2.90
132 133 3.366724 GCAAACGTGTACGATCAAGATCA 59.633 43.478 11.79 0.00 43.02 2.92
133 134 3.539592 CGCAAACGTGTACGATCAAGATC 60.540 47.826 11.79 0.00 43.02 2.75
134 135 2.344441 CGCAAACGTGTACGATCAAGAT 59.656 45.455 11.79 0.00 43.02 2.40
135 136 1.717113 CGCAAACGTGTACGATCAAGA 59.283 47.619 11.79 0.00 43.02 3.02
136 137 2.125168 CGCAAACGTGTACGATCAAG 57.875 50.000 11.79 0.00 43.02 3.02
149 150 7.229228 TCATACACTAATCATACACGCAAAC 57.771 36.000 0.00 0.00 0.00 2.93
150 151 8.334632 CAATCATACACTAATCATACACGCAAA 58.665 33.333 0.00 0.00 0.00 3.68
151 152 7.708752 TCAATCATACACTAATCATACACGCAA 59.291 33.333 0.00 0.00 0.00 4.85
152 153 7.206687 TCAATCATACACTAATCATACACGCA 58.793 34.615 0.00 0.00 0.00 5.24
153 154 7.637709 TCAATCATACACTAATCATACACGC 57.362 36.000 0.00 0.00 0.00 5.34
156 157 9.423061 CCGATTCAATCATACACTAATCATACA 57.577 33.333 0.00 0.00 0.00 2.29
157 158 8.873830 CCCGATTCAATCATACACTAATCATAC 58.126 37.037 0.00 0.00 0.00 2.39
158 159 8.040727 CCCCGATTCAATCATACACTAATCATA 58.959 37.037 0.00 0.00 0.00 2.15
159 160 6.881065 CCCCGATTCAATCATACACTAATCAT 59.119 38.462 0.00 0.00 0.00 2.45
160 161 6.230472 CCCCGATTCAATCATACACTAATCA 58.770 40.000 0.00 0.00 0.00 2.57
161 162 5.643777 CCCCCGATTCAATCATACACTAATC 59.356 44.000 0.00 0.00 0.00 1.75
162 163 5.560724 CCCCCGATTCAATCATACACTAAT 58.439 41.667 0.00 0.00 0.00 1.73
163 164 4.745478 GCCCCCGATTCAATCATACACTAA 60.745 45.833 0.00 0.00 0.00 2.24
164 165 3.244422 GCCCCCGATTCAATCATACACTA 60.244 47.826 0.00 0.00 0.00 2.74
165 166 2.487265 GCCCCCGATTCAATCATACACT 60.487 50.000 0.00 0.00 0.00 3.55
166 167 1.880027 GCCCCCGATTCAATCATACAC 59.120 52.381 0.00 0.00 0.00 2.90
167 168 1.542328 CGCCCCCGATTCAATCATACA 60.542 52.381 0.00 0.00 36.29 2.29
168 169 1.156736 CGCCCCCGATTCAATCATAC 58.843 55.000 0.00 0.00 36.29 2.39
169 170 0.762418 ACGCCCCCGATTCAATCATA 59.238 50.000 0.00 0.00 38.29 2.15
170 171 0.535102 GACGCCCCCGATTCAATCAT 60.535 55.000 0.00 0.00 38.29 2.45
171 172 1.153249 GACGCCCCCGATTCAATCA 60.153 57.895 0.00 0.00 38.29 2.57
172 173 1.153249 TGACGCCCCCGATTCAATC 60.153 57.895 0.00 0.00 38.29 2.67
173 174 1.451387 GTGACGCCCCCGATTCAAT 60.451 57.895 0.00 0.00 38.29 2.57
174 175 2.046700 GTGACGCCCCCGATTCAA 60.047 61.111 0.00 0.00 38.29 2.69
175 176 2.796483 CTTGTGACGCCCCCGATTCA 62.796 60.000 0.00 0.00 38.29 2.57
176 177 2.046700 TTGTGACGCCCCCGATTC 60.047 61.111 0.00 0.00 38.29 2.52
177 178 2.046314 CTTGTGACGCCCCCGATT 60.046 61.111 0.00 0.00 38.29 3.34
178 179 3.319198 ACTTGTGACGCCCCCGAT 61.319 61.111 0.00 0.00 38.29 4.18
179 180 4.308458 CACTTGTGACGCCCCCGA 62.308 66.667 0.00 0.00 38.29 5.14
180 181 2.718747 TAACACTTGTGACGCCCCCG 62.719 60.000 7.83 0.00 41.14 5.73
181 182 0.535553 TTAACACTTGTGACGCCCCC 60.536 55.000 7.83 0.00 0.00 5.40
182 183 0.872388 CTTAACACTTGTGACGCCCC 59.128 55.000 7.83 0.00 0.00 5.80
183 184 0.237498 GCTTAACACTTGTGACGCCC 59.763 55.000 7.83 0.00 0.00 6.13
184 185 0.237498 GGCTTAACACTTGTGACGCC 59.763 55.000 7.83 0.00 0.00 5.68
185 186 1.069906 CAGGCTTAACACTTGTGACGC 60.070 52.381 7.83 0.00 0.00 5.19
186 187 2.032894 CACAGGCTTAACACTTGTGACG 60.033 50.000 7.83 0.00 0.00 4.35
187 188 3.002348 GTCACAGGCTTAACACTTGTGAC 59.998 47.826 22.58 22.58 44.64 3.67
188 189 3.202906 GTCACAGGCTTAACACTTGTGA 58.797 45.455 12.22 12.22 33.22 3.58
189 190 2.942376 TGTCACAGGCTTAACACTTGTG 59.058 45.455 8.82 8.82 0.00 3.33
190 191 3.275617 TGTCACAGGCTTAACACTTGT 57.724 42.857 0.00 0.00 0.00 3.16
191 192 3.058016 CCATGTCACAGGCTTAACACTTG 60.058 47.826 0.00 0.00 0.00 3.16
192 193 3.149196 CCATGTCACAGGCTTAACACTT 58.851 45.455 0.00 0.00 0.00 3.16
193 194 2.371841 TCCATGTCACAGGCTTAACACT 59.628 45.455 0.00 0.00 0.00 3.55
194 195 2.778299 TCCATGTCACAGGCTTAACAC 58.222 47.619 0.00 0.00 0.00 3.32
195 196 3.181445 ACTTCCATGTCACAGGCTTAACA 60.181 43.478 0.00 0.00 0.00 2.41
196 197 3.412386 ACTTCCATGTCACAGGCTTAAC 58.588 45.455 0.00 0.00 0.00 2.01
778 1078 8.462016 GCAAAGACATCACCTTTAACAGATAAT 58.538 33.333 0.00 0.00 33.03 1.28
779 1079 7.094377 GGCAAAGACATCACCTTTAACAGATAA 60.094 37.037 0.00 0.00 33.03 1.75
780 1080 6.374333 GGCAAAGACATCACCTTTAACAGATA 59.626 38.462 0.00 0.00 33.03 1.98
781 1081 5.183904 GGCAAAGACATCACCTTTAACAGAT 59.816 40.000 0.00 0.00 33.03 2.90
782 1082 4.518970 GGCAAAGACATCACCTTTAACAGA 59.481 41.667 0.00 0.00 33.03 3.41
783 1083 4.278170 TGGCAAAGACATCACCTTTAACAG 59.722 41.667 0.00 0.00 33.03 3.16
784 1084 4.211125 TGGCAAAGACATCACCTTTAACA 58.789 39.130 0.00 0.00 33.03 2.41
785 1085 4.518970 TCTGGCAAAGACATCACCTTTAAC 59.481 41.667 0.00 0.00 33.03 2.01
786 1086 4.724399 TCTGGCAAAGACATCACCTTTAA 58.276 39.130 0.00 0.00 33.03 1.52
787 1087 4.365514 TCTGGCAAAGACATCACCTTTA 57.634 40.909 0.00 0.00 33.03 1.85
788 1088 3.228188 TCTGGCAAAGACATCACCTTT 57.772 42.857 0.00 0.00 34.46 3.11
789 1089 2.887152 GTTCTGGCAAAGACATCACCTT 59.113 45.455 0.00 0.00 33.46 3.50
790 1090 2.508526 GTTCTGGCAAAGACATCACCT 58.491 47.619 0.00 0.00 33.46 4.00
791 1091 1.541588 GGTTCTGGCAAAGACATCACC 59.458 52.381 0.00 0.00 33.46 4.02
792 1092 2.485814 GAGGTTCTGGCAAAGACATCAC 59.514 50.000 0.00 0.00 33.46 3.06
793 1093 2.373169 AGAGGTTCTGGCAAAGACATCA 59.627 45.455 10.42 0.00 33.46 3.07
794 1094 3.006247 GAGAGGTTCTGGCAAAGACATC 58.994 50.000 0.00 0.00 33.46 3.06
868 1185 2.498078 GGCTGAGATAGGTATAGGTGCC 59.502 54.545 0.00 0.00 0.00 5.01
1164 1511 0.390340 CCGACACACACTCCTGGATG 60.390 60.000 0.00 0.69 0.00 3.51
1300 1647 1.768684 AACACACTGAGGGGCACGAT 61.769 55.000 0.00 0.00 0.00 3.73
1548 5794 0.767998 TGTACATGGGCCACTTCACA 59.232 50.000 9.28 8.26 0.00 3.58
1758 6067 0.107459 CTCCTCCTTTGCTGCTACCC 60.107 60.000 0.00 0.00 0.00 3.69
2123 6501 0.320374 ACGATGCTGAGGTCGGAAAA 59.680 50.000 0.00 0.00 41.87 2.29
2329 7979 5.316167 TCATTCATGACCACTTTGCTAACT 58.684 37.500 0.00 0.00 0.00 2.24
2397 8974 1.019673 CCAGCTACGCATGCAAGATT 58.980 50.000 19.57 3.85 0.00 2.40
2462 9040 4.457496 ACCGCTCCATGCCAGTCG 62.457 66.667 0.00 0.00 38.78 4.18
2572 9150 1.451207 ACTGCAAGGCACACGTTGA 60.451 52.632 2.91 0.00 42.88 3.18
2585 9164 1.298157 GCCGCACAACTATCACTGCA 61.298 55.000 0.00 0.00 0.00 4.41
2611 9190 1.299541 CGAAGACAAAGCCACAGTGT 58.700 50.000 0.00 0.00 0.00 3.55
2678 9258 2.659016 CTGCAAGCGGAGTGGAGA 59.341 61.111 0.00 0.00 36.62 3.71
2767 9351 2.009774 GGATGACGATGTTGTGAAGGG 58.990 52.381 0.00 0.00 0.00 3.95
2776 9360 1.402896 ATGGGCGAGGATGACGATGT 61.403 55.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.