Multiple sequence alignment - TraesCS7A01G212900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G212900 chr7A 100.000 6946 0 0 1 6946 176416779 176423724 0.000000e+00 12827.0
1 TraesCS7A01G212900 chr7A 95.258 717 34 0 1 717 508624961 508625677 0.000000e+00 1136.0
2 TraesCS7A01G212900 chr7A 92.145 331 26 0 4985 5315 176421598 176421928 1.050000e-127 468.0
3 TraesCS7A01G212900 chr7A 92.145 331 26 0 4820 5150 176421763 176422093 1.050000e-127 468.0
4 TraesCS7A01G212900 chr7A 92.140 229 18 0 3513 3741 176420177 176420405 2.420000e-84 324.0
5 TraesCS7A01G212900 chr7A 92.140 229 18 0 3399 3627 176420291 176420519 2.420000e-84 324.0
6 TraesCS7A01G212900 chr7A 87.402 127 15 1 721 846 271626725 271626851 2.020000e-30 145.0
7 TraesCS7A01G212900 chr7A 96.078 51 1 1 6796 6846 624979454 624979405 1.610000e-11 82.4
8 TraesCS7A01G212900 chr7D 94.314 3975 180 24 2642 6616 174409116 174413044 0.000000e+00 6047.0
9 TraesCS7A01G212900 chr7D 91.795 1950 72 30 719 2594 174407181 174409116 0.000000e+00 2634.0
10 TraesCS7A01G212900 chr7D 93.656 331 21 0 4820 5150 174411459 174411789 4.840000e-136 496.0
11 TraesCS7A01G212900 chr7D 92.145 331 26 0 4985 5315 174411294 174411624 1.050000e-127 468.0
12 TraesCS7A01G212900 chr7D 93.450 229 15 0 3399 3627 174409987 174410215 2.400000e-89 340.0
13 TraesCS7A01G212900 chr7D 92.140 229 18 0 3513 3741 174409873 174410101 2.420000e-84 324.0
14 TraesCS7A01G212900 chr7D 93.976 166 10 0 4820 4985 174411624 174411789 1.160000e-62 252.0
15 TraesCS7A01G212900 chr7D 91.566 166 14 0 5150 5315 174411294 174411459 5.420000e-56 230.0
16 TraesCS7A01G212900 chr7D 92.453 106 8 0 721 826 567733291 567733396 1.210000e-32 152.0
17 TraesCS7A01G212900 chr7B 94.991 2655 112 9 2516 5150 138870940 138873593 0.000000e+00 4146.0
18 TraesCS7A01G212900 chr7B 91.824 1859 86 21 721 2522 138868043 138869892 0.000000e+00 2531.0
19 TraesCS7A01G212900 chr7B 93.339 1171 57 8 4985 6155 138873263 138874412 0.000000e+00 1711.0
20 TraesCS7A01G212900 chr7B 89.066 503 28 15 6448 6946 138874756 138875235 3.590000e-167 599.0
21 TraesCS7A01G212900 chr7B 93.450 229 15 0 3399 3627 138871956 138872184 2.400000e-89 340.0
22 TraesCS7A01G212900 chr7B 90.830 229 21 0 3513 3741 138871842 138872070 2.430000e-79 307.0
23 TraesCS7A01G212900 chr7B 91.324 219 11 1 6148 6366 138874548 138874758 6.810000e-75 292.0
24 TraesCS7A01G212900 chr7B 92.547 161 12 0 5150 5310 138873263 138873423 1.510000e-56 231.0
25 TraesCS7A01G212900 chr7B 93.396 106 7 0 721 826 639087928 639088033 2.590000e-34 158.0
26 TraesCS7A01G212900 chr7B 90.435 115 11 0 3399 3513 138872070 138872184 1.210000e-32 152.0
27 TraesCS7A01G212900 chr4A 95.676 717 31 0 1 717 121620799 121620083 0.000000e+00 1153.0
28 TraesCS7A01G212900 chr4A 95.417 720 33 0 1 720 455176450 455177169 0.000000e+00 1147.0
29 TraesCS7A01G212900 chr5A 95.537 717 32 0 1 717 437958500 437959216 0.000000e+00 1147.0
30 TraesCS7A01G212900 chr6A 95.291 722 33 1 1 721 70811090 70810369 0.000000e+00 1144.0
31 TraesCS7A01G212900 chr6A 95.397 717 33 0 1 717 521714481 521715197 0.000000e+00 1142.0
32 TraesCS7A01G212900 chr6A 95.119 717 35 0 1 717 496854090 496854806 0.000000e+00 1131.0
33 TraesCS7A01G212900 chr6A 92.308 39 3 0 961 999 131937833 131937795 1.000000e-03 56.5
34 TraesCS7A01G212900 chr6A 78.000 100 15 4 2870 2962 455938483 455938384 1.000000e-03 56.5
35 TraesCS7A01G212900 chr6A 94.444 36 2 0 2924 2959 495672507 495672472 1.000000e-03 56.5
36 TraesCS7A01G212900 chr3A 95.397 717 33 0 1 717 644954525 644955241 0.000000e+00 1142.0
37 TraesCS7A01G212900 chr2A 95.000 720 36 0 1 720 411299453 411298734 0.000000e+00 1131.0
38 TraesCS7A01G212900 chr2A 91.589 107 9 0 721 827 748545361 748545467 1.560000e-31 148.0
39 TraesCS7A01G212900 chr2D 88.226 654 53 10 5837 6482 365348263 365348900 0.000000e+00 760.0
40 TraesCS7A01G212900 chr2D 92.683 41 2 1 961 1000 516703807 516703847 2.710000e-04 58.4
41 TraesCS7A01G212900 chr4D 92.453 106 8 0 721 826 509822414 509822309 1.210000e-32 152.0
42 TraesCS7A01G212900 chr1D 92.453 106 8 0 721 826 267792538 267792433 1.210000e-32 152.0
43 TraesCS7A01G212900 chr1B 92.453 106 8 0 721 826 19072637 19072742 1.210000e-32 152.0
44 TraesCS7A01G212900 chr1A 84.397 141 18 3 721 861 363216230 363216094 1.220000e-27 135.0
45 TraesCS7A01G212900 chr4B 77.778 189 29 8 2876 3056 100585100 100584917 3.430000e-18 104.0
46 TraesCS7A01G212900 chr5B 95.000 40 1 1 2870 2908 622039045 622039006 2.090000e-05 62.1
47 TraesCS7A01G212900 chr6B 94.737 38 2 0 2919 2956 75916509 75916546 7.520000e-05 60.2
48 TraesCS7A01G212900 chr6B 100.000 30 0 0 961 990 195277482 195277453 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G212900 chr7A 176416779 176423724 6945 False 2882.200000 12827 93.714000 1 6946 5 chr7A.!!$F3 6945
1 TraesCS7A01G212900 chr7A 508624961 508625677 716 False 1136.000000 1136 95.258000 1 717 1 chr7A.!!$F2 716
2 TraesCS7A01G212900 chr7D 174407181 174413044 5863 False 1348.875000 6047 92.880250 719 6616 8 chr7D.!!$F2 5897
3 TraesCS7A01G212900 chr7B 138868043 138875235 7192 False 1145.444444 4146 91.978444 721 6946 9 chr7B.!!$F2 6225
4 TraesCS7A01G212900 chr4A 121620083 121620799 716 True 1153.000000 1153 95.676000 1 717 1 chr4A.!!$R1 716
5 TraesCS7A01G212900 chr4A 455176450 455177169 719 False 1147.000000 1147 95.417000 1 720 1 chr4A.!!$F1 719
6 TraesCS7A01G212900 chr5A 437958500 437959216 716 False 1147.000000 1147 95.537000 1 717 1 chr5A.!!$F1 716
7 TraesCS7A01G212900 chr6A 70810369 70811090 721 True 1144.000000 1144 95.291000 1 721 1 chr6A.!!$R1 720
8 TraesCS7A01G212900 chr6A 521714481 521715197 716 False 1142.000000 1142 95.397000 1 717 1 chr6A.!!$F2 716
9 TraesCS7A01G212900 chr6A 496854090 496854806 716 False 1131.000000 1131 95.119000 1 717 1 chr6A.!!$F1 716
10 TraesCS7A01G212900 chr3A 644954525 644955241 716 False 1142.000000 1142 95.397000 1 717 1 chr3A.!!$F1 716
11 TraesCS7A01G212900 chr2A 411298734 411299453 719 True 1131.000000 1131 95.000000 1 720 1 chr2A.!!$R1 719
12 TraesCS7A01G212900 chr2D 365348263 365348900 637 False 760.000000 760 88.226000 5837 6482 1 chr2D.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 818 0.592148 ACTCGAACTCGTGACCTCAC 59.408 55.000 8.06 0.0 43.15 3.51 F
2240 2331 0.035056 AGCCCTCAACCATTTCCTCG 60.035 55.000 0.00 0.0 0.00 4.63 F
2386 2478 0.169009 GTGGTCGCTTCAATTGCTCC 59.831 55.000 0.00 0.0 0.00 4.70 F
2388 2480 0.881118 GGTCGCTTCAATTGCTCCAA 59.119 50.000 0.00 0.0 0.00 3.53 F
3665 4832 1.623811 TCCAGCCAGTTACAGAACCTC 59.376 52.381 0.00 0.0 36.08 3.85 F
4847 6014 0.322975 TCAGGAACCTTCAGCAGCTC 59.677 55.000 0.00 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2366 0.033011 GGAGAGGTGGCTAGAGGACA 60.033 60.000 0.00 0.00 0.0 4.02 R
3296 4463 1.072965 CTTGCAGAACCAGTCTCCCTT 59.927 52.381 0.00 0.00 32.7 3.95 R
4258 5425 0.979665 TCTTCCTTCCACCAGCAGAG 59.020 55.000 0.00 0.00 0.0 3.35 R
4594 5761 2.703416 TCTGGTGTCTGATCAACATGC 58.297 47.619 11.98 3.41 34.4 4.06 R
4873 6040 0.595588 CAATTGTTGCTGCCACGGTA 59.404 50.000 0.00 0.00 0.0 4.02 R
6568 7887 0.109365 TTCAAATGCGCATGGTTCGG 60.109 50.000 26.09 10.00 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.147732 TCTTGATCCTATCTTGCAAGTCTATAA 57.852 33.333 25.19 6.03 37.71 0.98
99 100 2.430367 GGCAACCCCGAAGTGACT 59.570 61.111 0.00 0.00 0.00 3.41
147 148 2.673368 CCGTAGTTTGAGGAGTTCATGC 59.327 50.000 0.00 0.00 35.27 4.06
190 191 8.107095 TGCTTTGGTCCAGTACTCTATTAAAAT 58.893 33.333 0.00 0.00 0.00 1.82
295 296 9.772973 TTTCCATAAGCACGTATGACTATATTT 57.227 29.630 5.32 0.00 33.97 1.40
320 321 9.554395 TTGGAATACATGTATACATTACACTGG 57.446 33.333 18.56 5.68 33.61 4.00
393 394 2.601481 CGCATCCGGCATAATTCTTC 57.399 50.000 0.00 0.00 45.17 2.87
421 422 3.133901 TGATCCATTGCCTACGAGCTTTA 59.866 43.478 0.00 0.00 0.00 1.85
592 593 4.846779 TTAAGTTTCCAGATGTGGTTGC 57.153 40.909 9.03 0.38 45.28 4.17
615 616 5.008415 GCATTGACAACTCAGCTGCTAATAT 59.992 40.000 9.47 0.00 35.51 1.28
695 696 2.556622 ACCCTCGAAAATTGTTGCGATT 59.443 40.909 0.00 0.00 43.94 3.34
817 818 0.592148 ACTCGAACTCGTGACCTCAC 59.408 55.000 8.06 0.00 43.15 3.51
831 832 1.420138 ACCTCACGGTCACAAAGGAAT 59.580 47.619 0.00 0.00 40.27 3.01
833 834 3.263425 ACCTCACGGTCACAAAGGAATAT 59.737 43.478 0.00 0.00 40.27 1.28
973 1004 3.951680 AGAAAACCCGCCTATAAATGGTG 59.048 43.478 0.00 0.00 35.05 4.17
990 1021 2.931512 GTGCTTAAGGCGCCAAATAA 57.068 45.000 31.54 21.92 44.87 1.40
1094 1142 3.615155 GCCTCCTTAGCCCATATCATTC 58.385 50.000 0.00 0.00 0.00 2.67
1104 1152 3.560025 GCCCATATCATTCAACTCCCGAT 60.560 47.826 0.00 0.00 0.00 4.18
1139 1189 1.885887 CCAAGGAATTTCGCAGGAACA 59.114 47.619 0.00 0.00 0.00 3.18
1154 1204 0.511653 GAACAAAAGCTCCGACCGAC 59.488 55.000 0.00 0.00 0.00 4.79
1227 1283 1.734137 CTCCCACTCATACCGACCG 59.266 63.158 0.00 0.00 0.00 4.79
1567 1629 4.752879 GCCGAGCGCAACCAGGTA 62.753 66.667 11.47 0.00 37.47 3.08
1568 1630 2.047655 CCGAGCGCAACCAGGTAA 60.048 61.111 11.47 0.00 0.00 2.85
1569 1631 1.449601 CCGAGCGCAACCAGGTAAT 60.450 57.895 11.47 0.00 0.00 1.89
1590 1652 3.236632 AGCCAAATCCGAAGCATTTTC 57.763 42.857 0.00 0.00 0.00 2.29
1628 1690 3.977427 TGTCTATCAGTTGCGCGATAAT 58.023 40.909 12.10 0.00 0.00 1.28
1654 1716 3.607987 CATCTTCGTCGCCGTCGC 61.608 66.667 0.00 0.00 35.26 5.19
1718 1780 6.735678 TGACGTGTTTCTATAATTGCACAT 57.264 33.333 0.00 0.00 0.00 3.21
1745 1807 1.271597 GGTTCCAGCTTCAGACACCAT 60.272 52.381 0.00 0.00 0.00 3.55
1783 1868 9.645059 TCACAGTACTGAGATTTATGAAAAGAG 57.355 33.333 29.30 0.00 0.00 2.85
1786 1871 9.868277 CAGTACTGAGATTTATGAAAAGAGTCT 57.132 33.333 18.45 0.00 0.00 3.24
1792 1877 9.559732 TGAGATTTATGAAAAGAGTCTGTCAAA 57.440 29.630 10.07 3.30 0.00 2.69
1826 1913 1.240256 AACAAATTAAGCCGCACGGA 58.760 45.000 14.43 0.00 37.50 4.69
1916 2005 3.099905 TGTCATCTAGAGGGAACAGTGG 58.900 50.000 4.28 0.00 0.00 4.00
1927 2018 5.045797 AGAGGGAACAGTGGAAATAACCTAC 60.046 44.000 0.00 0.00 0.00 3.18
2013 2104 5.253330 CAAAGGCAATAGGGTTGACTCTTA 58.747 41.667 0.00 0.00 36.61 2.10
2052 2143 3.135994 TCTAAAAGTTCGAGTTGGTGGC 58.864 45.455 0.00 0.00 0.00 5.01
2240 2331 0.035056 AGCCCTCAACCATTTCCTCG 60.035 55.000 0.00 0.00 0.00 4.63
2256 2347 3.518998 CGCGAGTCCTCCATCCGT 61.519 66.667 0.00 0.00 0.00 4.69
2295 2387 0.260523 GTCCTCTAGCCACCTCTCCT 59.739 60.000 0.00 0.00 0.00 3.69
2330 2422 6.389906 GTCCTCCGTCATTTCAAAATTTGAT 58.610 36.000 9.41 0.00 39.84 2.57
2386 2478 0.169009 GTGGTCGCTTCAATTGCTCC 59.831 55.000 0.00 0.00 0.00 4.70
2388 2480 0.881118 GGTCGCTTCAATTGCTCCAA 59.119 50.000 0.00 0.00 0.00 3.53
2466 2559 6.153680 TGAAAATTGAAAAGTAGGTGGTGTGT 59.846 34.615 0.00 0.00 0.00 3.72
2600 3747 9.331282 GAAGCATAAGAAGTTTGAGTGGTATAT 57.669 33.333 0.00 0.00 0.00 0.86
2630 3777 7.763356 TCGAAATGTTTTTAAGGTTTGTGAGA 58.237 30.769 0.00 0.00 0.00 3.27
2722 3869 7.969690 TTTATTCTCTCTCCTCTCTCATTGT 57.030 36.000 0.00 0.00 0.00 2.71
2724 3871 3.897239 TCTCTCTCCTCTCTCATTGTCC 58.103 50.000 0.00 0.00 0.00 4.02
2806 3953 7.925483 TGCACTTACAAATTTAAGTTCTTGCAT 59.075 29.630 10.40 0.00 39.77 3.96
2828 3975 2.623535 GCAATGCCAGCAATTCATTGA 58.376 42.857 16.75 0.00 45.87 2.57
2862 4009 9.816787 ATTACTCCCTCATTTTAGGTTTACAAA 57.183 29.630 0.00 0.00 34.56 2.83
3009 4157 9.743057 TTTGTTAGTCAGTCAAATAAATGGTTG 57.257 29.630 0.00 0.00 0.00 3.77
3188 4355 2.271800 CTGATCCTTACGTGAACAGCC 58.728 52.381 0.00 0.00 0.00 4.85
3247 4414 2.508887 CTCCTCTGCGAGCTGTGC 60.509 66.667 0.00 0.00 0.00 4.57
3585 4752 4.553330 TTGTGGATGAGGGTTACTCTTC 57.447 45.455 0.00 0.00 46.72 2.87
3665 4832 1.623811 TCCAGCCAGTTACAGAACCTC 59.376 52.381 0.00 0.00 36.08 3.85
3673 4840 2.701951 AGTTACAGAACCTCCCGTTTCA 59.298 45.455 0.00 0.00 36.08 2.69
3799 4966 2.872408 CGGGACAATTCCAGTGCAT 58.128 52.632 0.00 0.00 44.98 3.96
3892 5059 2.973694 TAAATCCACTGCGTAGGACC 57.026 50.000 5.26 0.00 36.60 4.46
4180 5347 5.725362 AGCGCTAGTTCTTCTGTTAAAGAT 58.275 37.500 8.99 0.00 35.30 2.40
4258 5425 4.578105 TGGAAAATGTTGGAAATGGCAAAC 59.422 37.500 0.00 0.00 0.00 2.93
4511 5678 4.787551 TGGGAATCGCCATGTATTAGTTT 58.212 39.130 0.00 0.00 38.95 2.66
4594 5761 1.804372 GCCTCGTCAAGCCATAGTCAG 60.804 57.143 0.00 0.00 0.00 3.51
4843 6010 0.768221 ACCCTCAGGAACCTTCAGCA 60.768 55.000 0.00 0.00 36.73 4.41
4845 6012 0.676151 CCTCAGGAACCTTCAGCAGC 60.676 60.000 0.00 0.00 0.00 5.25
4847 6014 0.322975 TCAGGAACCTTCAGCAGCTC 59.677 55.000 0.00 0.00 0.00 4.09
4862 6029 2.037136 GCTCGTGCTGCAACATCCT 61.037 57.895 2.77 0.00 36.03 3.24
4873 6040 4.142093 GCTGCAACATCCTATGAAATTGGT 60.142 41.667 0.00 0.00 40.32 3.67
4877 6044 5.505654 GCAACATCCTATGAAATTGGTACCG 60.506 44.000 7.57 0.00 40.32 4.02
4889 6056 1.894756 GGTACCGTGGCAGCAACAA 60.895 57.895 0.00 0.00 0.00 2.83
4906 6073 7.339953 CAGCAACAATTGAAGTTAGAAAAAGC 58.660 34.615 13.59 0.00 0.00 3.51
4943 6110 2.416893 GGCGAGTCCAAGAGAAAACATC 59.583 50.000 0.00 0.00 34.01 3.06
4953 6120 5.182001 CCAAGAGAAAACATCGTTCTGGAAT 59.818 40.000 0.00 0.00 35.46 3.01
4954 6121 5.869753 AGAGAAAACATCGTTCTGGAATG 57.130 39.130 0.00 0.00 35.46 2.67
5018 6185 2.664851 CTTCAGCCGTTCGTGCCA 60.665 61.111 3.07 0.00 0.00 4.92
5086 6253 0.250338 AAAGTTCTGGACCAGACCGC 60.250 55.000 24.24 16.13 40.46 5.68
5098 6265 2.737376 GACCGCGGTGAGTCCAAC 60.737 66.667 39.65 15.35 35.57 3.77
5106 6273 2.561569 CGGTGAGTCCAACAGAAAACT 58.438 47.619 0.00 0.00 35.57 2.66
5286 6453 4.196193 AGAAAACATCGTTCTGGAACACA 58.804 39.130 12.94 0.50 41.20 3.72
5320 6487 2.418669 TCCAAGAAACCCAGGAAGAGT 58.581 47.619 0.00 0.00 0.00 3.24
5400 6567 6.624423 TCAAGATAGACAAAACCTACGGTAC 58.376 40.000 0.00 0.00 33.12 3.34
5429 6596 0.886563 CTTCCAGCCCTTTCAGCAAG 59.113 55.000 0.00 0.00 0.00 4.01
5430 6597 0.478072 TTCCAGCCCTTTCAGCAAGA 59.522 50.000 0.00 0.00 33.80 3.02
5746 6913 2.502130 GCCTCTTGCTAGGGTTTAGACT 59.498 50.000 0.00 0.00 37.11 3.24
5755 6922 1.546476 AGGGTTTAGACTGCGTCTCAG 59.454 52.381 13.24 0.00 42.40 3.35
5765 6932 3.321497 ACTGCGTCTCAGATTGTCTTTC 58.679 45.455 0.00 0.00 45.72 2.62
5766 6933 3.243873 ACTGCGTCTCAGATTGTCTTTCA 60.244 43.478 0.00 0.00 45.72 2.69
5768 6935 2.091277 GCGTCTCAGATTGTCTTTCACG 59.909 50.000 0.00 0.00 0.00 4.35
5794 6961 8.175069 GGTTGTGAAAGGAAAAATTCTTTTGTC 58.825 33.333 5.12 0.00 38.82 3.18
6009 7176 2.990967 AGGCAATGGTTGGTGCGG 60.991 61.111 0.00 0.00 41.85 5.69
6066 7233 1.165270 GAACGCTGGCTGTTAATGGT 58.835 50.000 0.00 0.00 0.00 3.55
6091 7258 3.555966 CTGGACAAAAAGTCTCCCAAGT 58.444 45.455 0.00 0.00 46.72 3.16
6117 7284 3.902112 CCAGCTGGGGGTTGTGGT 61.902 66.667 26.14 0.00 0.00 4.16
6211 7522 1.794714 TCCCTGAGGAGAGGCATTAC 58.205 55.000 0.00 0.00 37.19 1.89
6212 7523 1.292242 TCCCTGAGGAGAGGCATTACT 59.708 52.381 0.00 0.00 37.19 2.24
6213 7524 1.415659 CCCTGAGGAGAGGCATTACTG 59.584 57.143 0.00 0.00 33.47 2.74
6214 7525 2.392662 CCTGAGGAGAGGCATTACTGA 58.607 52.381 0.00 0.00 0.00 3.41
6215 7526 2.768527 CCTGAGGAGAGGCATTACTGAA 59.231 50.000 0.00 0.00 0.00 3.02
6216 7527 3.198635 CCTGAGGAGAGGCATTACTGAAA 59.801 47.826 0.00 0.00 0.00 2.69
6217 7528 4.440880 CTGAGGAGAGGCATTACTGAAAG 58.559 47.826 0.00 0.00 42.29 2.62
6293 7611 5.565592 TTATACAAGCTGGAATGCAACTG 57.434 39.130 0.00 0.00 34.99 3.16
6323 7641 6.267471 TGTTTCTATTTGCAGGAATGAAGGTT 59.733 34.615 0.00 0.00 0.00 3.50
6336 7654 6.215636 AGGAATGAAGGTTATGTGAGGTAAGT 59.784 38.462 0.00 0.00 0.00 2.24
6360 7678 3.690460 CTCTAGGTTGGTTTGGCAGAAT 58.310 45.455 0.00 0.00 0.00 2.40
6366 7684 6.469782 AGGTTGGTTTGGCAGAATATATTG 57.530 37.500 1.78 0.00 0.00 1.90
6380 7698 8.122952 GCAGAATATATTGTTGGTTACTGTCAC 58.877 37.037 1.78 0.00 0.00 3.67
6396 7714 2.172505 TGTCACCAGTCACCAACTCAAT 59.827 45.455 0.00 0.00 35.45 2.57
6401 7719 2.810274 CCAGTCACCAACTCAATGTCTG 59.190 50.000 0.00 0.00 35.45 3.51
6406 7724 1.270839 ACCAACTCAATGTCTGGACCG 60.271 52.381 5.34 0.00 33.80 4.79
6418 7736 3.280295 GTCTGGACCGAGATGAAGTCTA 58.720 50.000 0.00 0.00 37.29 2.59
6419 7737 3.695060 GTCTGGACCGAGATGAAGTCTAA 59.305 47.826 0.00 0.00 37.29 2.10
6420 7738 3.948473 TCTGGACCGAGATGAAGTCTAAG 59.052 47.826 0.00 0.00 37.29 2.18
6421 7739 3.697045 CTGGACCGAGATGAAGTCTAAGT 59.303 47.826 0.00 0.00 37.29 2.24
6425 7743 6.380274 TGGACCGAGATGAAGTCTAAGTAAAT 59.620 38.462 0.00 0.00 37.29 1.40
6434 7752 7.946655 TGAAGTCTAAGTAAATATGCCATCG 57.053 36.000 0.00 0.00 0.00 3.84
6436 7754 6.102897 AGTCTAAGTAAATATGCCATCGCT 57.897 37.500 0.00 0.00 35.36 4.93
6437 7755 5.928839 AGTCTAAGTAAATATGCCATCGCTG 59.071 40.000 0.00 0.00 35.36 5.18
6438 7756 3.904136 AAGTAAATATGCCATCGCTGC 57.096 42.857 0.00 0.00 35.36 5.25
6500 7818 7.433131 TGGTATTCGTCTATTCGTTAATCACAC 59.567 37.037 0.00 0.00 0.00 3.82
6535 7854 8.612619 GTTCAACTATTTCTCTTCAGAACACAA 58.387 33.333 0.00 0.00 38.44 3.33
6538 7857 9.443283 CAACTATTTCTCTTCAGAACACAAAAG 57.557 33.333 0.00 0.00 38.44 2.27
6559 7878 1.065709 GTCCATTTAGGCTTGACCCGA 60.066 52.381 0.00 0.00 40.58 5.14
6563 7882 2.413310 TTTAGGCTTGACCCGAATCC 57.587 50.000 0.00 0.00 40.58 3.01
6566 7885 1.146263 GGCTTGACCCGAATCCGAT 59.854 57.895 0.00 0.00 38.22 4.18
6567 7886 1.160329 GGCTTGACCCGAATCCGATG 61.160 60.000 0.00 0.00 38.22 3.84
6568 7887 1.776034 GCTTGACCCGAATCCGATGC 61.776 60.000 0.00 0.00 38.22 3.91
6569 7888 1.153249 TTGACCCGAATCCGATGCC 60.153 57.895 0.00 0.00 38.22 4.40
6599 7918 3.432782 CGCATTTGAATTTCTGCCTCTC 58.567 45.455 0.00 0.00 0.00 3.20
6619 7938 1.196808 CGGTTCCACAATTCAGTTCCG 59.803 52.381 0.00 0.00 0.00 4.30
6623 7942 4.022329 GGTTCCACAATTCAGTTCCGAATT 60.022 41.667 0.00 0.00 44.52 2.17
6624 7943 5.154222 GTTCCACAATTCAGTTCCGAATTC 58.846 41.667 0.00 0.00 42.36 2.17
6631 7950 2.942710 TCAGTTCCGAATTCGAGTGTC 58.057 47.619 28.76 13.36 43.02 3.67
6652 7972 6.426937 GTGTCATTTTGTGTTAAGCTAGAGGA 59.573 38.462 0.00 0.00 0.00 3.71
6653 7973 6.995686 TGTCATTTTGTGTTAAGCTAGAGGAA 59.004 34.615 0.00 0.00 0.00 3.36
6662 7983 5.188359 TGTTAAGCTAGAGGAATTTACCCGT 59.812 40.000 0.00 0.00 0.00 5.28
6680 8001 5.326900 ACCCGTGGTCTTTTTATAACCATT 58.673 37.500 0.00 0.00 44.44 3.16
6694 8015 9.606631 TTTTATAACCATTCAAGCAAAGTTTGT 57.393 25.926 16.70 1.59 0.00 2.83
6695 8016 9.606631 TTTATAACCATTCAAGCAAAGTTTGTT 57.393 25.926 16.70 8.33 0.00 2.83
6696 8017 9.606631 TTATAACCATTCAAGCAAAGTTTGTTT 57.393 25.926 16.70 14.07 34.24 2.83
6731 8052 5.090652 TGTAAAAGTGCATCGACAAAGTC 57.909 39.130 0.00 0.00 0.00 3.01
6739 8060 3.629855 TGCATCGACAAAGTCCAGAAAAA 59.370 39.130 0.00 0.00 0.00 1.94
6749 8070 0.250727 TCCAGAAAAAGACGGCCAGG 60.251 55.000 2.24 0.00 0.00 4.45
6759 8080 0.669625 GACGGCCAGGACTGTAACAC 60.670 60.000 2.24 0.00 0.00 3.32
6760 8081 1.119574 ACGGCCAGGACTGTAACACT 61.120 55.000 2.24 0.00 0.00 3.55
6761 8082 0.892755 CGGCCAGGACTGTAACACTA 59.107 55.000 2.24 0.00 0.00 2.74
6885 8207 2.431057 GGTCGGAAGAAGGATCTAAGCA 59.569 50.000 0.00 0.00 45.01 3.91
6887 8209 3.381908 GTCGGAAGAAGGATCTAAGCAGA 59.618 47.826 0.00 0.00 45.01 4.26
6888 8210 3.634448 TCGGAAGAAGGATCTAAGCAGAG 59.366 47.826 0.00 0.00 37.03 3.35
6889 8211 3.634448 CGGAAGAAGGATCTAAGCAGAGA 59.366 47.826 0.00 0.00 33.77 3.10
6891 8213 5.356426 GGAAGAAGGATCTAAGCAGAGAAC 58.644 45.833 0.00 0.00 33.77 3.01
6892 8214 5.351948 AAGAAGGATCTAAGCAGAGAACC 57.648 43.478 6.18 6.18 38.40 3.62
6893 8215 4.357325 AGAAGGATCTAAGCAGAGAACCA 58.643 43.478 14.17 0.00 40.11 3.67
6894 8216 4.780021 AGAAGGATCTAAGCAGAGAACCAA 59.220 41.667 14.17 0.00 40.11 3.67
6895 8217 5.249393 AGAAGGATCTAAGCAGAGAACCAAA 59.751 40.000 14.17 0.00 40.11 3.28
6896 8218 5.505181 AGGATCTAAGCAGAGAACCAAAA 57.495 39.130 14.17 0.00 40.11 2.44
6897 8219 5.249420 AGGATCTAAGCAGAGAACCAAAAC 58.751 41.667 14.17 0.00 40.11 2.43
6898 8220 4.093556 GGATCTAAGCAGAGAACCAAAACG 59.906 45.833 8.71 0.00 38.10 3.60
6899 8221 3.399330 TCTAAGCAGAGAACCAAAACGG 58.601 45.455 0.00 0.00 42.50 4.44
6900 8222 0.668535 AAGCAGAGAACCAAAACGGC 59.331 50.000 0.00 0.00 39.03 5.68
6901 8223 0.179018 AGCAGAGAACCAAAACGGCT 60.179 50.000 0.00 0.00 39.03 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.071334 CCGGATCATAACACATAGTAGGTGAT 60.071 42.308 21.05 12.09 39.53 3.06
190 191 7.287810 GGAAACTAAAGGATATTAAGGCCTCA 58.712 38.462 5.23 0.00 0.00 3.86
206 207 1.556451 GGGGTCCTAGCGGAAACTAAA 59.444 52.381 0.00 0.00 42.08 1.85
295 296 8.710239 ACCAGTGTAATGTATACATGTATTCCA 58.290 33.333 22.90 18.85 36.56 3.53
306 307 6.765989 GCTCCAATTCACCAGTGTAATGTATA 59.234 38.462 0.00 0.00 0.00 1.47
307 308 5.590259 GCTCCAATTCACCAGTGTAATGTAT 59.410 40.000 0.00 0.00 0.00 2.29
317 318 3.937706 CAGAACTAGCTCCAATTCACCAG 59.062 47.826 0.00 0.00 0.00 4.00
320 321 4.319177 ACACAGAACTAGCTCCAATTCAC 58.681 43.478 0.00 0.00 0.00 3.18
393 394 2.804527 CGTAGGCAATGGATCAGTGATG 59.195 50.000 11.20 0.00 30.53 3.07
592 593 4.959596 ATTAGCAGCTGAGTTGTCAATG 57.040 40.909 20.43 0.00 30.14 2.82
615 616 8.477256 CAAGGGAAGCCAAATAATATTCTCAAA 58.523 33.333 0.00 0.00 0.00 2.69
695 696 4.342951 CGTGATAACCCACAAGTATAGGGA 59.657 45.833 3.32 0.00 45.80 4.20
755 756 4.904466 GCAGGAAAAGGCTGCATG 57.096 55.556 0.50 0.00 42.98 4.06
777 778 2.719376 TGGAAACAGCCTCTTGCAC 58.281 52.632 0.00 0.00 44.83 4.57
817 818 9.801873 ATGAAATTTTATATTCCTTTGTGACCG 57.198 29.630 0.00 0.00 0.00 4.79
932 951 1.946768 CTTTCTGTTTTCCAGCACGGA 59.053 47.619 0.00 0.00 44.40 4.69
957 976 1.981256 AAGCACCATTTATAGGCGGG 58.019 50.000 0.00 0.00 0.00 6.13
973 1004 5.447144 CCAATTTTTATTTGGCGCCTTAAGC 60.447 40.000 29.70 0.00 37.42 3.09
1059 1096 4.719369 AGGCCGAGTTCGTGTCGC 62.719 66.667 0.00 0.00 36.06 5.19
1094 1142 2.159014 TCGTATTTGGGATCGGGAGTTG 60.159 50.000 0.00 0.00 0.00 3.16
1104 1152 1.339631 CCTTGGTGCTCGTATTTGGGA 60.340 52.381 0.00 0.00 0.00 4.37
1139 1189 0.249573 TTTCGTCGGTCGGAGCTTTT 60.250 50.000 5.58 0.00 40.32 2.27
1154 1204 4.367023 TCGTCGGGCTGGGTTTCG 62.367 66.667 0.00 0.00 0.00 3.46
1218 1274 4.828296 AGGGCGGTCGGTCGGTAT 62.828 66.667 1.10 0.00 0.00 2.73
1360 1422 0.100682 GCGAGTCCGTGAAGCAGATA 59.899 55.000 0.00 0.00 38.24 1.98
1567 1629 5.105392 TGAAAATGCTTCGGATTTGGCTATT 60.105 36.000 0.00 0.00 0.00 1.73
1568 1630 4.402155 TGAAAATGCTTCGGATTTGGCTAT 59.598 37.500 0.00 0.00 0.00 2.97
1569 1631 3.761218 TGAAAATGCTTCGGATTTGGCTA 59.239 39.130 0.00 0.00 0.00 3.93
1590 1652 3.424703 AGACAAGACAATCATGGGGTTG 58.575 45.455 0.00 0.00 0.00 3.77
1628 1690 1.538204 GCGACGAAGATGGCTGGATAA 60.538 52.381 0.00 0.00 0.00 1.75
1654 1716 2.099652 TTATCCATGGAGCGAGGCCG 62.100 60.000 21.33 0.00 39.16 6.13
1655 1717 0.321122 CTTATCCATGGAGCGAGGCC 60.321 60.000 21.33 0.00 0.00 5.19
1718 1780 3.008049 GTCTGAAGCTGGAACCTAGGAAA 59.992 47.826 17.98 0.00 0.00 3.13
1745 1807 5.616270 TCAGTACTGTGAACTTTGCCATTA 58.384 37.500 21.99 0.00 0.00 1.90
1783 1868 7.730364 TTTCCTGATTCTTAGTTTGACAGAC 57.270 36.000 0.00 0.00 0.00 3.51
1786 1871 7.873719 TGTTTTCCTGATTCTTAGTTTGACA 57.126 32.000 0.00 0.00 0.00 3.58
1792 1877 9.914131 GCTTAATTTGTTTTCCTGATTCTTAGT 57.086 29.630 0.00 0.00 0.00 2.24
1916 2005 6.910433 CGCACACCAAATATGTAGGTTATTTC 59.090 38.462 0.00 0.00 32.15 2.17
1927 2018 3.728864 GCTTGAGACGCACACCAAATATG 60.729 47.826 0.00 0.00 0.00 1.78
1986 2077 0.897863 AACCCTATTGCCTTTGCGCA 60.898 50.000 5.66 5.66 41.78 6.09
2037 2128 1.006102 CTCGCCACCAACTCGAACT 60.006 57.895 0.00 0.00 0.00 3.01
2052 2143 4.618912 CACATGTGTAGAGAAGTGAACTCG 59.381 45.833 18.03 0.00 39.12 4.18
2240 2331 1.739338 ATGACGGATGGAGGACTCGC 61.739 60.000 0.00 0.00 0.00 5.03
2274 2365 1.398692 GAGAGGTGGCTAGAGGACAG 58.601 60.000 0.00 0.00 30.92 3.51
2275 2366 0.033011 GGAGAGGTGGCTAGAGGACA 60.033 60.000 0.00 0.00 0.00 4.02
2330 2422 6.122277 AGAAAATTTGAAGCGGGATCATAGA 58.878 36.000 0.00 0.00 0.00 1.98
2568 3715 7.550551 CACTCAAACTTCTTATGCTTCATCCTA 59.449 37.037 0.00 0.00 0.00 2.94
2722 3869 0.911769 CACATAGGAACTGCCAGGGA 59.088 55.000 0.00 0.00 41.52 4.20
2724 3871 1.278985 TGACACATAGGAACTGCCAGG 59.721 52.381 0.00 0.00 41.52 4.45
2806 3953 0.818938 ATGAATTGCTGGCATTGCGA 59.181 45.000 1.91 0.00 0.00 5.10
2862 4009 2.175202 TGGTCAAAATAAATGCGGGCT 58.825 42.857 0.00 0.00 0.00 5.19
3009 4157 3.317993 ACACACATTTTGAGGCCAACTAC 59.682 43.478 5.01 0.00 30.88 2.73
3247 4414 2.476051 GTGTGTGAAGCCGCATCG 59.524 61.111 0.00 0.00 35.00 3.84
3296 4463 1.072965 CTTGCAGAACCAGTCTCCCTT 59.927 52.381 0.00 0.00 32.70 3.95
3665 4832 3.565482 CCATCCACAATATCTGAAACGGG 59.435 47.826 0.00 0.00 0.00 5.28
3673 4840 6.146760 AGAGTAACTCCCATCCACAATATCT 58.853 40.000 0.00 0.00 0.00 1.98
3799 4966 3.984838 GCTTTGTGCATTTGTCCCA 57.015 47.368 0.00 0.00 42.31 4.37
3892 5059 1.478137 GTCTAGTGCTCCGCGTATTG 58.522 55.000 4.92 0.00 0.00 1.90
3948 5115 9.674068 CATGAGAATATGATCCATCAGAAGAAT 57.326 33.333 0.00 0.00 40.64 2.40
4180 5347 2.125391 GCCGCAGACTGCTGATGA 60.125 61.111 24.36 0.00 45.17 2.92
4258 5425 0.979665 TCTTCCTTCCACCAGCAGAG 59.020 55.000 0.00 0.00 0.00 3.35
4594 5761 2.703416 TCTGGTGTCTGATCAACATGC 58.297 47.619 11.98 3.41 34.40 4.06
4641 5808 4.019792 ACATGTTGTCTGTGGCTTGATA 57.980 40.909 0.00 0.00 0.00 2.15
4767 5934 2.287069 ACGATTTGTAGCGGAGAGATCG 60.287 50.000 9.15 9.15 37.52 3.69
4845 6012 1.596260 CATAGGATGTTGCAGCACGAG 59.404 52.381 5.00 0.00 0.00 4.18
4847 6014 1.655484 TCATAGGATGTTGCAGCACG 58.345 50.000 5.00 0.00 0.00 5.34
4862 6029 3.275143 CTGCCACGGTACCAATTTCATA 58.725 45.455 13.54 0.00 0.00 2.15
4873 6040 0.595588 CAATTGTTGCTGCCACGGTA 59.404 50.000 0.00 0.00 0.00 4.02
4877 6044 2.514205 ACTTCAATTGTTGCTGCCAC 57.486 45.000 5.13 0.00 0.00 5.01
4889 6056 6.207614 GGTCCAGAGCTTTTTCTAACTTCAAT 59.792 38.462 0.00 0.00 0.00 2.57
4906 6073 2.973899 CCACGGTCTGGTCCAGAG 59.026 66.667 22.46 13.74 41.46 3.35
4943 6110 1.358877 TCATCACGCATTCCAGAACG 58.641 50.000 0.00 0.00 0.00 3.95
4953 6120 1.485895 TGGATCCTTGATCATCACGCA 59.514 47.619 14.23 0.00 40.50 5.24
4954 6121 2.245159 TGGATCCTTGATCATCACGC 57.755 50.000 14.23 0.00 40.50 5.34
5086 6253 2.561569 AGTTTTCTGTTGGACTCACCG 58.438 47.619 0.00 0.00 42.61 4.94
5286 6453 5.832060 GGTTTCTTGGATCCTTGATCATCAT 59.168 40.000 14.23 0.00 40.50 2.45
5320 6487 9.255304 GATATTTCACTTTTTGCAAGTTTACCA 57.745 29.630 0.00 0.00 0.00 3.25
5400 6567 2.723273 AGGGCTGGAAGGAAAAATACG 58.277 47.619 0.00 0.00 0.00 3.06
5413 6580 0.886563 CTTCTTGCTGAAAGGGCTGG 59.113 55.000 0.00 0.00 36.46 4.85
5452 6619 9.236006 ACAAGCAAGTTTTAACAGATCAGATAT 57.764 29.630 0.00 0.00 0.00 1.63
5746 6913 3.059884 GTGAAAGACAATCTGAGACGCA 58.940 45.455 0.00 0.00 0.00 5.24
5765 6932 5.348164 AGAATTTTTCCTTTCACAACCGTG 58.652 37.500 0.00 0.00 45.08 4.94
5766 6933 5.592104 AGAATTTTTCCTTTCACAACCGT 57.408 34.783 0.00 0.00 0.00 4.83
5794 6961 6.761099 ACATCTGTCTACACACTAGGTAAG 57.239 41.667 0.00 0.00 0.00 2.34
5798 6965 5.392767 ACAACATCTGTCTACACACTAGG 57.607 43.478 0.00 0.00 29.87 3.02
5806 6973 8.818057 GGAAATGTACATACAACATCTGTCTAC 58.182 37.037 9.21 0.00 39.99 2.59
5973 7140 5.123227 TGCCTCATATAAACCAGCAACTAC 58.877 41.667 0.00 0.00 0.00 2.73
6009 7176 2.743928 CCAGTTCCGTGCTCCAGC 60.744 66.667 0.00 0.00 42.50 4.85
6066 7233 2.306847 GGAGACTTTTTGTCCAGCCAA 58.693 47.619 0.00 0.00 46.46 4.52
6117 7284 6.191534 CAAAATTTGCGACGAACAATTACA 57.808 33.333 0.00 0.00 0.00 2.41
6216 7527 6.122277 TCACAATCTTGGAAAGTTTCAGACT 58.878 36.000 17.16 0.00 46.34 3.24
6217 7528 6.038714 ACTCACAATCTTGGAAAGTTTCAGAC 59.961 38.462 17.16 1.02 46.34 3.51
6218 7529 6.038603 CACTCACAATCTTGGAAAGTTTCAGA 59.961 38.462 17.16 12.13 46.34 3.27
6293 7611 2.819608 TCCTGCAAATAGAAACACTGCC 59.180 45.455 0.00 0.00 31.92 4.85
6323 7641 6.263412 ACCTAGAGCTACTTACCTCACATA 57.737 41.667 0.00 0.00 0.00 2.29
6336 7654 1.982226 TGCCAAACCAACCTAGAGCTA 59.018 47.619 0.00 0.00 0.00 3.32
6380 7698 2.810274 CAGACATTGAGTTGGTGACTGG 59.190 50.000 0.00 0.00 39.19 4.00
6385 7703 2.154462 GGTCCAGACATTGAGTTGGTG 58.846 52.381 0.00 0.00 33.13 4.17
6396 7714 1.819288 GACTTCATCTCGGTCCAGACA 59.181 52.381 0.00 0.00 0.00 3.41
6401 7719 5.831702 TTACTTAGACTTCATCTCGGTCC 57.168 43.478 0.00 0.00 39.04 4.46
6406 7724 9.717942 ATGGCATATTTACTTAGACTTCATCTC 57.282 33.333 0.00 0.00 39.04 2.75
6418 7736 3.213506 TGCAGCGATGGCATATTTACTT 58.786 40.909 1.46 0.00 43.41 2.24
6419 7737 2.849942 TGCAGCGATGGCATATTTACT 58.150 42.857 1.46 0.00 43.41 2.24
6436 7754 6.183360 ACAAATCCATTAAATCGCTGTATGCA 60.183 34.615 0.00 0.00 43.06 3.96
6437 7755 6.208644 ACAAATCCATTAAATCGCTGTATGC 58.791 36.000 0.00 0.00 38.57 3.14
6438 7756 9.729023 TTTACAAATCCATTAAATCGCTGTATG 57.271 29.630 0.00 0.00 0.00 2.39
6509 7827 8.142994 TGTGTTCTGAAGAGAAATAGTTGAAC 57.857 34.615 0.00 0.00 40.00 3.18
6525 7843 5.534654 CCTAAATGGACCTTTTGTGTTCTGA 59.465 40.000 14.13 0.00 38.35 3.27
6535 7854 3.431415 GGTCAAGCCTAAATGGACCTTT 58.569 45.455 0.00 0.00 43.62 3.11
6538 7857 1.763968 GGGTCAAGCCTAAATGGACC 58.236 55.000 0.00 0.00 45.68 4.46
6559 7878 1.447317 GCATGGTTCGGCATCGGATT 61.447 55.000 0.00 0.00 36.95 3.01
6563 7882 4.596180 GCGCATGGTTCGGCATCG 62.596 66.667 0.30 0.00 37.82 3.84
6566 7885 2.634476 AAATGCGCATGGTTCGGCA 61.634 52.632 26.09 0.00 40.06 5.69
6567 7886 2.160221 CAAATGCGCATGGTTCGGC 61.160 57.895 26.09 0.00 0.00 5.54
6568 7887 0.109365 TTCAAATGCGCATGGTTCGG 60.109 50.000 26.09 10.00 0.00 4.30
6569 7888 1.912001 ATTCAAATGCGCATGGTTCG 58.088 45.000 26.09 10.82 0.00 3.95
6599 7918 1.196808 CGGAACTGAATTGTGGAACCG 59.803 52.381 0.00 0.00 34.36 4.44
6619 7938 7.149128 GCTTAACACAAAATGACACTCGAATTC 60.149 37.037 0.00 0.00 0.00 2.17
6623 7942 4.814234 AGCTTAACACAAAATGACACTCGA 59.186 37.500 0.00 0.00 0.00 4.04
6624 7943 5.095691 AGCTTAACACAAAATGACACTCG 57.904 39.130 0.00 0.00 0.00 4.18
6652 7972 7.450944 TGGTTATAAAAAGACCACGGGTAAATT 59.549 33.333 0.00 0.00 38.47 1.82
6653 7973 6.947158 TGGTTATAAAAAGACCACGGGTAAAT 59.053 34.615 0.00 0.00 38.47 1.40
6662 7983 7.531857 TGCTTGAATGGTTATAAAAAGACCA 57.468 32.000 0.00 0.00 46.57 4.02
6680 8001 5.180304 GGAAAACCAAACAAACTTTGCTTGA 59.820 36.000 16.06 0.00 38.64 3.02
6717 8038 2.542020 TTCTGGACTTTGTCGATGCA 57.458 45.000 0.00 0.00 32.65 3.96
6731 8052 0.250727 TCCTGGCCGTCTTTTTCTGG 60.251 55.000 0.00 0.00 0.00 3.86
6739 8060 0.830444 TGTTACAGTCCTGGCCGTCT 60.830 55.000 0.00 0.00 34.19 4.18
6749 8070 2.729882 CGTGCCTGTTAGTGTTACAGTC 59.270 50.000 0.00 0.00 41.08 3.51
6759 8080 0.512952 GTGTCTTGCGTGCCTGTTAG 59.487 55.000 0.00 0.00 0.00 2.34
6760 8081 0.179070 TGTGTCTTGCGTGCCTGTTA 60.179 50.000 0.00 0.00 0.00 2.41
6761 8082 1.029408 TTGTGTCTTGCGTGCCTGTT 61.029 50.000 0.00 0.00 0.00 3.16
6885 8207 0.602905 CGGAGCCGTTTTGGTTCTCT 60.603 55.000 0.00 0.00 46.55 3.10
6887 8209 1.599797 CCGGAGCCGTTTTGGTTCT 60.600 57.895 8.25 0.00 46.55 3.01
6888 8210 2.951458 CCGGAGCCGTTTTGGTTC 59.049 61.111 8.25 0.00 46.63 3.62
6889 8211 3.292159 GCCGGAGCCGTTTTGGTT 61.292 61.111 5.05 0.00 41.21 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.