Multiple sequence alignment - TraesCS7A01G212600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G212600 chr7A 100.000 3080 0 0 1 3080 176273928 176277007 0.000000e+00 5688
1 TraesCS7A01G212600 chr7A 91.406 128 10 1 673 799 485713023 485712896 1.140000e-39 174
2 TraesCS7A01G212600 chr7D 92.599 2216 145 10 870 3080 174293574 174295775 0.000000e+00 3166
3 TraesCS7A01G212600 chr7D 85.312 1137 138 20 1036 2160 568257989 568259108 0.000000e+00 1147
4 TraesCS7A01G212600 chr7D 86.625 800 101 5 1353 2152 568273088 568273881 0.000000e+00 880
5 TraesCS7A01G212600 chr7D 83.562 292 38 10 1044 1327 568272382 568272671 6.550000e-67 265
6 TraesCS7A01G212600 chr7B 89.573 2225 177 20 870 3077 138752961 138755147 0.000000e+00 2772
7 TraesCS7A01G212600 chr7B 81.555 862 126 24 1044 1887 623818083 623818929 0.000000e+00 680
8 TraesCS7A01G212600 chr2B 97.630 675 16 0 1 675 763407131 763407805 0.000000e+00 1158
9 TraesCS7A01G212600 chr2B 98.326 657 11 0 19 675 564134634 564133978 0.000000e+00 1153
10 TraesCS7A01G212600 chr2B 96.741 675 22 0 1 675 12163183 12162509 0.000000e+00 1125
11 TraesCS7A01G212600 chr2B 93.953 678 37 4 1 675 723357336 723356660 0.000000e+00 1022
12 TraesCS7A01G212600 chr2B 92.143 140 9 2 673 810 683776852 683776991 2.420000e-46 196
13 TraesCS7A01G212600 chr6B 96.148 675 25 1 1 675 709518824 709519497 0.000000e+00 1101
14 TraesCS7A01G212600 chr6B 96.018 678 24 3 1 676 426819768 426819092 0.000000e+00 1099
15 TraesCS7A01G212600 chr1B 96.024 679 24 3 1 677 27271049 27271726 0.000000e+00 1101
16 TraesCS7A01G212600 chr1B 96.000 675 27 0 1 675 373259711 373259037 0.000000e+00 1098
17 TraesCS7A01G212600 chr5B 96.090 665 21 5 1 663 696998893 696998232 0.000000e+00 1079
18 TraesCS7A01G212600 chr6A 95.385 130 5 1 673 801 384964097 384964226 4.030000e-49 206
19 TraesCS7A01G212600 chr6D 94.030 134 7 1 673 805 433277495 433277628 5.210000e-48 202
20 TraesCS7A01G212600 chr4D 94.574 129 5 2 673 800 4038336 4038209 6.740000e-47 198
21 TraesCS7A01G212600 chr3D 93.077 130 7 2 673 800 363253699 363253570 4.050000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G212600 chr7A 176273928 176277007 3079 False 5688.0 5688 100.0000 1 3080 1 chr7A.!!$F1 3079
1 TraesCS7A01G212600 chr7D 174293574 174295775 2201 False 3166.0 3166 92.5990 870 3080 1 chr7D.!!$F1 2210
2 TraesCS7A01G212600 chr7D 568257989 568259108 1119 False 1147.0 1147 85.3120 1036 2160 1 chr7D.!!$F2 1124
3 TraesCS7A01G212600 chr7D 568272382 568273881 1499 False 572.5 880 85.0935 1044 2152 2 chr7D.!!$F3 1108
4 TraesCS7A01G212600 chr7B 138752961 138755147 2186 False 2772.0 2772 89.5730 870 3077 1 chr7B.!!$F1 2207
5 TraesCS7A01G212600 chr7B 623818083 623818929 846 False 680.0 680 81.5550 1044 1887 1 chr7B.!!$F2 843
6 TraesCS7A01G212600 chr2B 763407131 763407805 674 False 1158.0 1158 97.6300 1 675 1 chr2B.!!$F2 674
7 TraesCS7A01G212600 chr2B 564133978 564134634 656 True 1153.0 1153 98.3260 19 675 1 chr2B.!!$R2 656
8 TraesCS7A01G212600 chr2B 12162509 12163183 674 True 1125.0 1125 96.7410 1 675 1 chr2B.!!$R1 674
9 TraesCS7A01G212600 chr2B 723356660 723357336 676 True 1022.0 1022 93.9530 1 675 1 chr2B.!!$R3 674
10 TraesCS7A01G212600 chr6B 709518824 709519497 673 False 1101.0 1101 96.1480 1 675 1 chr6B.!!$F1 674
11 TraesCS7A01G212600 chr6B 426819092 426819768 676 True 1099.0 1099 96.0180 1 676 1 chr6B.!!$R1 675
12 TraesCS7A01G212600 chr1B 27271049 27271726 677 False 1101.0 1101 96.0240 1 677 1 chr1B.!!$F1 676
13 TraesCS7A01G212600 chr1B 373259037 373259711 674 True 1098.0 1098 96.0000 1 675 1 chr1B.!!$R1 674
14 TraesCS7A01G212600 chr5B 696998232 696998893 661 True 1079.0 1079 96.0900 1 663 1 chr5B.!!$R1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
827 830 0.17899 ATTCCCAAATCCCTAGCCGC 60.179 55.0 0.0 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 2801 0.239879 GCACCATGTTGTAACCACCG 59.76 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.537143 AACTTGATGCGGTGGCTTGA 60.537 50.000 0.00 0.00 40.82 3.02
84 85 5.803020 CTGTAAGGTTGCTTCATCTTACC 57.197 43.478 10.13 0.00 40.20 2.85
126 127 2.159254 TCAGTGCCTTTGTGCAGTTTTC 60.159 45.455 0.00 0.00 42.11 2.29
173 174 0.948623 CGGTGTGGCAATTCGTCTGA 60.949 55.000 0.00 0.00 0.00 3.27
238 241 1.244816 CGGCATCGTGTCCTATCCTA 58.755 55.000 0.00 0.00 0.00 2.94
692 695 5.738619 AAAAACTTTGGTAGGGCTAATGG 57.261 39.130 0.00 0.00 0.00 3.16
693 696 2.437085 ACTTTGGTAGGGCTAATGGC 57.563 50.000 0.00 0.00 40.90 4.40
707 710 5.344207 GCTAATGGCCGAACTATAGTTTG 57.656 43.478 21.64 21.64 38.77 2.93
717 720 5.354767 CGAACTATAGTTTGGTTAGGGTCC 58.645 45.833 21.06 4.26 38.56 4.46
718 721 5.349061 AACTATAGTTTGGTTAGGGTCCG 57.651 43.478 12.50 0.00 33.93 4.79
719 722 3.708121 ACTATAGTTTGGTTAGGGTCCGG 59.292 47.826 0.00 0.00 0.00 5.14
720 723 0.614812 TAGTTTGGTTAGGGTCCGGC 59.385 55.000 0.00 0.00 0.00 6.13
721 724 1.676635 GTTTGGTTAGGGTCCGGCC 60.677 63.158 0.00 0.36 0.00 6.13
722 725 2.154747 TTTGGTTAGGGTCCGGCCA 61.155 57.895 15.49 4.04 39.65 5.36
723 726 2.132089 TTTGGTTAGGGTCCGGCCAG 62.132 60.000 15.49 0.00 39.65 4.85
724 727 2.686106 GGTTAGGGTCCGGCCAGA 60.686 66.667 15.49 0.00 39.65 3.86
725 728 2.732619 GGTTAGGGTCCGGCCAGAG 61.733 68.421 15.49 0.00 39.65 3.35
726 729 2.365105 TTAGGGTCCGGCCAGAGG 60.365 66.667 15.49 0.00 39.65 3.69
727 730 2.938511 TTAGGGTCCGGCCAGAGGA 61.939 63.158 15.49 0.00 39.65 3.71
728 731 2.465010 TTAGGGTCCGGCCAGAGGAA 62.465 60.000 15.49 1.22 39.84 3.36
729 732 2.873557 TAGGGTCCGGCCAGAGGAAG 62.874 65.000 15.49 0.00 39.84 3.46
730 733 3.003763 GGTCCGGCCAGAGGAAGT 61.004 66.667 2.24 0.00 39.84 3.01
731 734 2.579738 GTCCGGCCAGAGGAAGTC 59.420 66.667 2.24 0.00 39.84 3.01
732 735 2.683933 TCCGGCCAGAGGAAGTCC 60.684 66.667 2.24 0.00 34.33 3.85
747 750 6.819397 AGGAAGTCCTTAATGTTGCTTTAC 57.181 37.500 0.00 0.00 46.09 2.01
748 751 5.411669 AGGAAGTCCTTAATGTTGCTTTACG 59.588 40.000 0.00 0.00 46.09 3.18
749 752 5.410439 GGAAGTCCTTAATGTTGCTTTACGA 59.590 40.000 0.00 0.00 0.00 3.43
750 753 6.402226 GGAAGTCCTTAATGTTGCTTTACGAG 60.402 42.308 0.00 0.00 0.00 4.18
751 754 5.790593 AGTCCTTAATGTTGCTTTACGAGA 58.209 37.500 0.00 0.00 0.00 4.04
752 755 6.407202 AGTCCTTAATGTTGCTTTACGAGAT 58.593 36.000 0.00 0.00 0.00 2.75
753 756 6.879458 AGTCCTTAATGTTGCTTTACGAGATT 59.121 34.615 0.00 0.00 30.91 2.40
754 757 6.961554 GTCCTTAATGTTGCTTTACGAGATTG 59.038 38.462 0.00 0.00 28.86 2.67
755 758 6.653320 TCCTTAATGTTGCTTTACGAGATTGT 59.347 34.615 0.00 0.00 28.86 2.71
756 759 7.820386 TCCTTAATGTTGCTTTACGAGATTGTA 59.180 33.333 0.00 0.00 28.86 2.41
757 760 7.903431 CCTTAATGTTGCTTTACGAGATTGTAC 59.097 37.037 0.00 0.00 28.86 2.90
758 761 8.542497 TTAATGTTGCTTTACGAGATTGTACT 57.458 30.769 0.00 0.00 28.86 2.73
759 762 6.648725 ATGTTGCTTTACGAGATTGTACTC 57.351 37.500 0.00 0.00 0.00 2.59
760 763 4.927425 TGTTGCTTTACGAGATTGTACTCC 59.073 41.667 0.00 0.00 33.83 3.85
761 764 4.119442 TGCTTTACGAGATTGTACTCCC 57.881 45.455 0.00 0.00 33.83 4.30
762 765 3.767673 TGCTTTACGAGATTGTACTCCCT 59.232 43.478 0.00 0.00 33.83 4.20
763 766 4.951715 TGCTTTACGAGATTGTACTCCCTA 59.048 41.667 0.00 0.00 33.83 3.53
764 767 5.419788 TGCTTTACGAGATTGTACTCCCTAA 59.580 40.000 0.00 0.00 33.83 2.69
765 768 6.097839 TGCTTTACGAGATTGTACTCCCTAAT 59.902 38.462 0.00 0.00 33.83 1.73
766 769 6.985059 GCTTTACGAGATTGTACTCCCTAATT 59.015 38.462 0.00 0.00 33.83 1.40
767 770 7.494952 GCTTTACGAGATTGTACTCCCTAATTT 59.505 37.037 0.00 0.00 33.83 1.82
768 771 9.379791 CTTTACGAGATTGTACTCCCTAATTTT 57.620 33.333 0.00 0.00 33.83 1.82
769 772 9.729281 TTTACGAGATTGTACTCCCTAATTTTT 57.271 29.630 0.00 0.00 33.83 1.94
770 773 7.611213 ACGAGATTGTACTCCCTAATTTTTG 57.389 36.000 0.00 0.00 33.83 2.44
771 774 7.391620 ACGAGATTGTACTCCCTAATTTTTGA 58.608 34.615 0.00 0.00 33.83 2.69
772 775 7.549488 ACGAGATTGTACTCCCTAATTTTTGAG 59.451 37.037 0.00 0.00 33.83 3.02
773 776 7.549488 CGAGATTGTACTCCCTAATTTTTGAGT 59.451 37.037 0.00 8.07 40.87 3.41
774 777 9.886132 GAGATTGTACTCCCTAATTTTTGAGTA 57.114 33.333 0.00 6.57 38.85 2.59
824 827 2.755952 ACCATTCCCAAATCCCTAGC 57.244 50.000 0.00 0.00 0.00 3.42
825 828 1.217942 ACCATTCCCAAATCCCTAGCC 59.782 52.381 0.00 0.00 0.00 3.93
826 829 1.609208 CATTCCCAAATCCCTAGCCG 58.391 55.000 0.00 0.00 0.00 5.52
827 830 0.178990 ATTCCCAAATCCCTAGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
828 831 2.203351 CCCAAATCCCTAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
829 832 2.591715 CCAAATCCCTAGCCGCCG 60.592 66.667 0.00 0.00 0.00 6.46
830 833 2.189521 CAAATCCCTAGCCGCCGT 59.810 61.111 0.00 0.00 0.00 5.68
831 834 1.887707 CAAATCCCTAGCCGCCGTC 60.888 63.158 0.00 0.00 0.00 4.79
832 835 3.103091 AAATCCCTAGCCGCCGTCC 62.103 63.158 0.00 0.00 0.00 4.79
833 836 4.853142 ATCCCTAGCCGCCGTCCA 62.853 66.667 0.00 0.00 0.00 4.02
835 838 3.861797 CCCTAGCCGCCGTCCAAT 61.862 66.667 0.00 0.00 0.00 3.16
836 839 2.280186 CCTAGCCGCCGTCCAATC 60.280 66.667 0.00 0.00 0.00 2.67
837 840 2.658593 CTAGCCGCCGTCCAATCG 60.659 66.667 0.00 0.00 0.00 3.34
838 841 3.133767 CTAGCCGCCGTCCAATCGA 62.134 63.158 0.00 0.00 0.00 3.59
839 842 3.420214 TAGCCGCCGTCCAATCGAC 62.420 63.158 0.00 0.00 38.21 4.20
841 844 4.444838 CCGCCGTCCAATCGACCA 62.445 66.667 0.00 0.00 38.36 4.02
842 845 2.885644 CGCCGTCCAATCGACCAG 60.886 66.667 0.00 0.00 38.36 4.00
843 846 2.511600 GCCGTCCAATCGACCAGG 60.512 66.667 0.00 0.00 38.36 4.45
844 847 2.978824 CCGTCCAATCGACCAGGT 59.021 61.111 0.00 0.00 38.36 4.00
845 848 1.295423 CCGTCCAATCGACCAGGTT 59.705 57.895 0.00 0.00 38.36 3.50
846 849 0.739813 CCGTCCAATCGACCAGGTTC 60.740 60.000 0.00 0.00 38.36 3.62
847 850 0.739813 CGTCCAATCGACCAGGTTCC 60.740 60.000 0.00 0.00 38.36 3.62
848 851 0.392595 GTCCAATCGACCAGGTTCCC 60.393 60.000 0.00 0.00 35.23 3.97
849 852 1.077716 CCAATCGACCAGGTTCCCC 60.078 63.158 0.00 0.00 0.00 4.81
850 853 1.449601 CAATCGACCAGGTTCCCCG 60.450 63.158 0.00 0.00 35.12 5.73
851 854 3.325201 AATCGACCAGGTTCCCCGC 62.325 63.158 0.00 0.00 35.12 6.13
854 857 3.647771 GACCAGGTTCCCCGCCTT 61.648 66.667 0.00 0.00 33.31 4.35
855 858 3.623703 GACCAGGTTCCCCGCCTTC 62.624 68.421 0.00 0.00 33.31 3.46
856 859 3.330720 CCAGGTTCCCCGCCTTCT 61.331 66.667 0.00 0.00 33.31 2.85
857 860 2.757077 CAGGTTCCCCGCCTTCTT 59.243 61.111 0.00 0.00 33.31 2.52
858 861 1.377333 CAGGTTCCCCGCCTTCTTC 60.377 63.158 0.00 0.00 33.31 2.87
859 862 2.045242 GGTTCCCCGCCTTCTTCC 60.045 66.667 0.00 0.00 0.00 3.46
860 863 2.603652 GGTTCCCCGCCTTCTTCCT 61.604 63.158 0.00 0.00 0.00 3.36
861 864 1.078356 GTTCCCCGCCTTCTTCCTC 60.078 63.158 0.00 0.00 0.00 3.71
862 865 2.298661 TTCCCCGCCTTCTTCCTCC 61.299 63.158 0.00 0.00 0.00 4.30
863 866 3.798511 CCCCGCCTTCTTCCTCCC 61.799 72.222 0.00 0.00 0.00 4.30
864 867 3.009115 CCCGCCTTCTTCCTCCCA 61.009 66.667 0.00 0.00 0.00 4.37
865 868 2.378634 CCCGCCTTCTTCCTCCCAT 61.379 63.158 0.00 0.00 0.00 4.00
866 869 1.153086 CCGCCTTCTTCCTCCCATG 60.153 63.158 0.00 0.00 0.00 3.66
867 870 1.604378 CGCCTTCTTCCTCCCATGT 59.396 57.895 0.00 0.00 0.00 3.21
868 871 0.462759 CGCCTTCTTCCTCCCATGTC 60.463 60.000 0.00 0.00 0.00 3.06
875 878 4.530857 CCTCCCATGTCGCGACCC 62.531 72.222 34.34 13.47 0.00 4.46
892 895 1.343069 CCCGGATAAGAGGAAGGAGG 58.657 60.000 0.73 0.00 0.00 4.30
897 900 2.362717 GGATAAGAGGAAGGAGGTCACG 59.637 54.545 0.00 0.00 0.00 4.35
1102 1108 3.103911 GGTCGCACGTCGTCAAGG 61.104 66.667 0.00 0.00 39.67 3.61
1179 1185 1.002624 TTTCACCATCGGAGGCCAC 60.003 57.895 5.01 0.00 0.00 5.01
1245 1251 3.502211 ACGCCGATTGGATATCCATTTTC 59.498 43.478 25.07 19.09 46.97 2.29
1268 1280 2.029020 TGTTCTCTGACCGAAGTGATGG 60.029 50.000 0.00 0.00 0.00 3.51
1320 1332 2.408271 TGCTTGACCAAGATAGGCAG 57.592 50.000 13.44 0.00 40.79 4.85
1345 1357 1.781555 CCGCAGTACAGTTTCAGCG 59.218 57.895 0.00 0.00 44.24 5.18
1395 1811 2.124151 GCATGGGGCTTCGGTCAT 60.124 61.111 0.00 0.00 40.25 3.06
1410 1826 6.420604 GCTTCGGTCATTTCATCAAAAGAAAA 59.579 34.615 0.00 0.00 38.36 2.29
1419 1835 9.485206 CATTTCATCAAAAGAAAAGACTTGGAT 57.515 29.630 0.00 0.00 38.36 3.41
1507 1923 4.473520 CCGAGCCAATCCTGCCGT 62.474 66.667 0.00 0.00 0.00 5.68
1510 1926 1.823295 GAGCCAATCCTGCCGTCTA 59.177 57.895 0.00 0.00 0.00 2.59
1707 2123 0.601558 AGACCGCAACTCACATACGT 59.398 50.000 0.00 0.00 0.00 3.57
1743 2159 2.091555 ACCCAAGGTGTTCAAGGCTTTA 60.092 45.455 0.00 0.00 32.98 1.85
1780 2196 3.356639 GACTCGCTGCCCGTGATGA 62.357 63.158 0.00 0.00 38.35 2.92
1793 2209 0.179111 GTGATGAACGAGGGCGATGA 60.179 55.000 0.00 0.00 41.64 2.92
1827 2243 2.699768 GCATTTGCTGGTAGCGGCA 61.700 57.895 24.07 24.07 46.26 5.69
1855 2271 2.205022 TGACATGGAAAGGCTGAAGG 57.795 50.000 0.00 0.00 0.00 3.46
2128 2551 9.732130 AGATCTGGTTATTTATCCTGCTATTTC 57.268 33.333 0.00 0.00 0.00 2.17
2219 2650 5.473931 TGAGCTCAGTTGTCATTTCTAGAC 58.526 41.667 13.74 0.00 36.55 2.59
2230 2661 7.351414 TGTCATTTCTAGACATCTGAAAACG 57.649 36.000 0.00 0.00 40.80 3.60
2235 2666 5.462530 TCTAGACATCTGAAAACGGTGAA 57.537 39.130 0.00 0.00 0.00 3.18
2238 2669 6.934645 TCTAGACATCTGAAAACGGTGAAAAT 59.065 34.615 0.00 0.00 0.00 1.82
2252 2683 7.745620 ACGGTGAAAATCTTCTGTTTAATCT 57.254 32.000 0.00 0.00 32.33 2.40
2268 2699 9.565213 CTGTTTAATCTGAAGACATCATTTTCC 57.435 33.333 0.00 0.00 37.44 3.13
2269 2700 8.236586 TGTTTAATCTGAAGACATCATTTTCCG 58.763 33.333 0.00 0.00 37.44 4.30
2282 2713 6.918022 ACATCATTTTCCGAGTTCTGAAAAAC 59.082 34.615 13.08 0.00 40.57 2.43
2286 2717 7.713507 TCATTTTCCGAGTTCTGAAAAACTAGA 59.286 33.333 13.08 8.12 40.57 2.43
2289 2720 4.021368 TCCGAGTTCTGAAAAACTAGAGGG 60.021 45.833 0.00 0.00 39.55 4.30
2290 2721 4.246458 CGAGTTCTGAAAAACTAGAGGGG 58.754 47.826 0.00 0.00 39.55 4.79
2294 2725 6.477253 AGTTCTGAAAAACTAGAGGGGATTC 58.523 40.000 0.00 0.00 37.71 2.52
2313 2744 8.059461 GGGGATTCTAGAAATCCTAAGGAAAAA 58.941 37.037 22.51 0.00 44.35 1.94
2332 2763 8.880878 GGAAAAACCTCAATTTTAAGTTAGCA 57.119 30.769 0.00 0.00 31.50 3.49
2335 2766 6.901081 AACCTCAATTTTAAGTTAGCAGCT 57.099 33.333 0.00 0.00 0.00 4.24
2336 2767 6.901081 ACCTCAATTTTAAGTTAGCAGCTT 57.099 33.333 0.00 0.00 0.00 3.74
2337 2768 6.681777 ACCTCAATTTTAAGTTAGCAGCTTG 58.318 36.000 0.00 0.00 0.00 4.01
2349 2780 7.778470 AGTTAGCAGCTTGTACAATCTATTC 57.222 36.000 11.42 4.93 0.00 1.75
2376 2807 8.681486 AGTTAGAGTTTTAAATTTACGGTGGT 57.319 30.769 0.00 0.00 0.00 4.16
2384 2815 9.247126 GTTTTAAATTTACGGTGGTTACAACAT 57.753 29.630 0.00 0.00 32.39 2.71
2385 2816 8.798748 TTTAAATTTACGGTGGTTACAACATG 57.201 30.769 0.00 0.00 32.39 3.21
2409 2840 6.765036 TGGTGCATGTTGTTTAATTCAAATGT 59.235 30.769 0.00 0.00 0.00 2.71
2425 2856 8.771920 ATTCAAATGTGAAGTCATAGTTCGTA 57.228 30.769 4.31 0.00 46.75 3.43
2429 2860 9.265938 CAAATGTGAAGTCATAGTTCGTAATTG 57.734 33.333 0.00 0.00 30.24 2.32
2440 2871 3.563808 AGTTCGTAATTGCACTGCTTCAA 59.436 39.130 1.98 0.00 0.00 2.69
2448 2879 4.430137 TTGCACTGCTTCAATCAGAATC 57.570 40.909 1.98 0.00 35.25 2.52
2449 2880 2.417586 TGCACTGCTTCAATCAGAATCG 59.582 45.455 1.98 0.00 35.25 3.34
2490 2921 3.485463 AAGAATTGTCCGGAGTTGACA 57.515 42.857 3.06 0.00 40.80 3.58
2517 2948 6.500589 TTGCTGCTAGAATAAATAGAGGGT 57.499 37.500 0.00 0.00 0.00 4.34
2626 3061 3.565516 GGAACGTCCAGAAAAATCTTGC 58.434 45.455 0.00 0.00 36.28 4.01
2629 3064 4.489679 ACGTCCAGAAAAATCTTGCTTC 57.510 40.909 0.00 0.00 0.00 3.86
2646 3081 2.603560 GCTTCGAGAAATAACGTCCAGG 59.396 50.000 0.00 0.00 0.00 4.45
2653 3088 4.652822 AGAAATAACGTCCAGGAAAGCTT 58.347 39.130 0.00 0.00 0.00 3.74
2708 3144 6.506500 AGATAATGCTTTCTTGTTGGACTG 57.493 37.500 0.00 0.00 0.00 3.51
2768 3204 3.327757 TCTTCAGTGGTACTTGGCTTGAT 59.672 43.478 0.00 0.00 0.00 2.57
2793 3229 4.202182 ACGCAGGTAGTTTTTCTGTACTGA 60.202 41.667 0.00 0.00 0.00 3.41
2856 3292 9.778741 TGTAGAGTTTTAGAATGTTGTGAAGAT 57.221 29.630 0.00 0.00 0.00 2.40
2890 3326 4.337274 TGCTAATGAGGATGTTCATTGCTG 59.663 41.667 10.58 3.79 45.00 4.41
2924 3360 4.624364 CCACCAGCACTGCCGTGA 62.624 66.667 12.93 0.00 43.97 4.35
2925 3361 3.046087 CACCAGCACTGCCGTGAG 61.046 66.667 12.93 3.45 43.97 3.51
2982 3418 2.561209 ACCCTTCAAAAACCCCAACT 57.439 45.000 0.00 0.00 0.00 3.16
2999 3435 5.949354 CCCCAACTAAACATCAGGTCATAAA 59.051 40.000 0.00 0.00 0.00 1.40
3049 3485 4.394920 GGCTGGTTCATATGTTTCTTTCGA 59.605 41.667 1.90 0.00 0.00 3.71
3066 3502 7.611213 TCTTTCGAAAAGGAAGATAACATCC 57.389 36.000 12.41 0.00 34.50 3.51
3070 3506 4.682320 CGAAAAGGAAGATAACATCCCCGA 60.682 45.833 0.00 0.00 34.80 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.655733 ACTGAACAAACGAACAGCGG 59.344 50.000 0.00 0.00 46.49 5.52
126 127 1.304134 GCTACAACCACCAAGGGGG 60.304 63.158 5.67 5.67 43.89 5.40
685 688 4.213482 CCAAACTATAGTTCGGCCATTAGC 59.787 45.833 18.28 0.00 37.25 3.09
686 689 5.365619 ACCAAACTATAGTTCGGCCATTAG 58.634 41.667 20.45 0.00 35.56 1.73
687 690 5.362105 ACCAAACTATAGTTCGGCCATTA 57.638 39.130 20.45 0.00 35.56 1.90
688 691 4.230745 ACCAAACTATAGTTCGGCCATT 57.769 40.909 20.45 0.46 35.56 3.16
689 692 3.926058 ACCAAACTATAGTTCGGCCAT 57.074 42.857 20.45 0.80 35.56 4.40
690 693 3.706600 AACCAAACTATAGTTCGGCCA 57.293 42.857 20.45 0.00 35.56 5.36
691 694 4.124970 CCTAACCAAACTATAGTTCGGCC 58.875 47.826 20.45 0.00 35.56 6.13
692 695 4.124970 CCCTAACCAAACTATAGTTCGGC 58.875 47.826 20.45 0.00 35.56 5.54
693 696 5.349061 ACCCTAACCAAACTATAGTTCGG 57.651 43.478 19.19 19.19 38.07 4.30
694 697 5.354767 GGACCCTAACCAAACTATAGTTCG 58.645 45.833 18.28 13.48 37.25 3.95
695 698 5.354767 CGGACCCTAACCAAACTATAGTTC 58.645 45.833 18.28 2.29 37.25 3.01
696 699 4.162888 CCGGACCCTAACCAAACTATAGTT 59.837 45.833 12.50 12.50 40.50 2.24
697 700 3.708121 CCGGACCCTAACCAAACTATAGT 59.292 47.826 0.00 0.00 0.00 2.12
698 701 3.493873 GCCGGACCCTAACCAAACTATAG 60.494 52.174 5.05 0.00 0.00 1.31
699 702 2.435437 GCCGGACCCTAACCAAACTATA 59.565 50.000 5.05 0.00 0.00 1.31
700 703 1.211212 GCCGGACCCTAACCAAACTAT 59.789 52.381 5.05 0.00 0.00 2.12
701 704 0.614812 GCCGGACCCTAACCAAACTA 59.385 55.000 5.05 0.00 0.00 2.24
702 705 1.377612 GCCGGACCCTAACCAAACT 59.622 57.895 5.05 0.00 0.00 2.66
703 706 1.676635 GGCCGGACCCTAACCAAAC 60.677 63.158 5.05 0.00 0.00 2.93
704 707 2.132089 CTGGCCGGACCCTAACCAAA 62.132 60.000 5.28 0.00 37.83 3.28
705 708 2.529643 TGGCCGGACCCTAACCAA 60.530 61.111 3.83 0.00 37.83 3.67
706 709 3.006728 CTGGCCGGACCCTAACCA 61.007 66.667 5.28 0.00 37.83 3.67
707 710 2.686106 TCTGGCCGGACCCTAACC 60.686 66.667 11.27 0.00 37.83 2.85
708 711 2.732619 CCTCTGGCCGGACCCTAAC 61.733 68.421 11.27 0.00 37.83 2.34
709 712 2.365105 CCTCTGGCCGGACCCTAA 60.365 66.667 11.27 0.00 37.83 2.69
710 713 2.873557 CTTCCTCTGGCCGGACCCTA 62.874 65.000 11.27 0.00 37.83 3.53
711 714 4.332543 TTCCTCTGGCCGGACCCT 62.333 66.667 11.27 0.00 37.83 4.34
712 715 3.787001 CTTCCTCTGGCCGGACCC 61.787 72.222 11.27 0.00 37.83 4.46
713 716 3.003763 ACTTCCTCTGGCCGGACC 61.004 66.667 11.27 6.37 39.84 4.46
714 717 2.579738 GACTTCCTCTGGCCGGAC 59.420 66.667 11.27 0.56 0.00 4.79
715 718 2.683933 GGACTTCCTCTGGCCGGA 60.684 66.667 15.16 15.16 0.00 5.14
716 719 2.685380 AGGACTTCCTCTGGCCGG 60.685 66.667 4.71 4.71 44.77 6.13
725 728 5.410439 TCGTAAAGCAACATTAAGGACTTCC 59.590 40.000 0.00 0.00 0.00 3.46
726 729 6.367969 TCTCGTAAAGCAACATTAAGGACTTC 59.632 38.462 0.00 0.00 0.00 3.01
727 730 6.228258 TCTCGTAAAGCAACATTAAGGACTT 58.772 36.000 0.00 0.00 0.00 3.01
728 731 5.790593 TCTCGTAAAGCAACATTAAGGACT 58.209 37.500 0.00 0.00 0.00 3.85
729 732 6.663944 ATCTCGTAAAGCAACATTAAGGAC 57.336 37.500 0.00 0.00 0.00 3.85
730 733 6.653320 ACAATCTCGTAAAGCAACATTAAGGA 59.347 34.615 0.00 0.00 0.00 3.36
731 734 6.842163 ACAATCTCGTAAAGCAACATTAAGG 58.158 36.000 0.00 0.00 0.00 2.69
732 735 8.656849 AGTACAATCTCGTAAAGCAACATTAAG 58.343 33.333 0.00 0.00 0.00 1.85
733 736 8.542497 AGTACAATCTCGTAAAGCAACATTAA 57.458 30.769 0.00 0.00 0.00 1.40
734 737 7.277098 GGAGTACAATCTCGTAAAGCAACATTA 59.723 37.037 0.00 0.00 35.52 1.90
735 738 6.092259 GGAGTACAATCTCGTAAAGCAACATT 59.908 38.462 0.00 0.00 35.52 2.71
736 739 5.581085 GGAGTACAATCTCGTAAAGCAACAT 59.419 40.000 0.00 0.00 35.52 2.71
737 740 4.927425 GGAGTACAATCTCGTAAAGCAACA 59.073 41.667 0.00 0.00 35.52 3.33
738 741 4.329256 GGGAGTACAATCTCGTAAAGCAAC 59.671 45.833 0.00 0.00 35.52 4.17
739 742 4.222145 AGGGAGTACAATCTCGTAAAGCAA 59.778 41.667 0.00 0.00 35.52 3.91
740 743 3.767673 AGGGAGTACAATCTCGTAAAGCA 59.232 43.478 0.00 0.00 35.52 3.91
741 744 4.388378 AGGGAGTACAATCTCGTAAAGC 57.612 45.455 0.00 0.00 35.52 3.51
742 745 8.943909 AAATTAGGGAGTACAATCTCGTAAAG 57.056 34.615 0.00 0.00 35.52 1.85
743 746 9.729281 AAAAATTAGGGAGTACAATCTCGTAAA 57.271 29.630 0.00 0.00 35.52 2.01
744 747 9.158233 CAAAAATTAGGGAGTACAATCTCGTAA 57.842 33.333 0.00 0.00 35.52 3.18
745 748 8.533657 TCAAAAATTAGGGAGTACAATCTCGTA 58.466 33.333 0.00 0.00 35.52 3.43
746 749 7.391620 TCAAAAATTAGGGAGTACAATCTCGT 58.608 34.615 0.00 0.00 35.52 4.18
747 750 7.549488 ACTCAAAAATTAGGGAGTACAATCTCG 59.451 37.037 0.00 0.00 38.74 4.04
748 751 8.794335 ACTCAAAAATTAGGGAGTACAATCTC 57.206 34.615 0.00 0.00 38.74 2.75
801 804 4.225042 GCTAGGGATTTGGGAATGGTTTTT 59.775 41.667 0.00 0.00 0.00 1.94
802 805 3.774766 GCTAGGGATTTGGGAATGGTTTT 59.225 43.478 0.00 0.00 0.00 2.43
803 806 3.374764 GCTAGGGATTTGGGAATGGTTT 58.625 45.455 0.00 0.00 0.00 3.27
804 807 2.359249 GGCTAGGGATTTGGGAATGGTT 60.359 50.000 0.00 0.00 0.00 3.67
805 808 1.217942 GGCTAGGGATTTGGGAATGGT 59.782 52.381 0.00 0.00 0.00 3.55
806 809 1.819305 CGGCTAGGGATTTGGGAATGG 60.819 57.143 0.00 0.00 0.00 3.16
807 810 1.609208 CGGCTAGGGATTTGGGAATG 58.391 55.000 0.00 0.00 0.00 2.67
808 811 0.178990 GCGGCTAGGGATTTGGGAAT 60.179 55.000 0.00 0.00 0.00 3.01
809 812 1.226262 GCGGCTAGGGATTTGGGAA 59.774 57.895 0.00 0.00 0.00 3.97
810 813 2.752807 GGCGGCTAGGGATTTGGGA 61.753 63.158 0.00 0.00 0.00 4.37
811 814 2.203351 GGCGGCTAGGGATTTGGG 60.203 66.667 0.00 0.00 0.00 4.12
812 815 2.591715 CGGCGGCTAGGGATTTGG 60.592 66.667 7.61 0.00 0.00 3.28
813 816 1.887707 GACGGCGGCTAGGGATTTG 60.888 63.158 13.24 0.00 0.00 2.32
814 817 2.504519 GACGGCGGCTAGGGATTT 59.495 61.111 13.24 0.00 0.00 2.17
815 818 3.547513 GGACGGCGGCTAGGGATT 61.548 66.667 14.66 0.00 0.00 3.01
816 819 4.853142 TGGACGGCGGCTAGGGAT 62.853 66.667 14.66 0.00 0.00 3.85
818 821 3.809374 GATTGGACGGCGGCTAGGG 62.809 68.421 14.66 0.00 0.00 3.53
819 822 2.280186 GATTGGACGGCGGCTAGG 60.280 66.667 14.66 0.00 0.00 3.02
820 823 2.658593 CGATTGGACGGCGGCTAG 60.659 66.667 14.66 0.00 0.00 3.42
821 824 3.142162 TCGATTGGACGGCGGCTA 61.142 61.111 14.66 2.22 0.00 3.93
822 825 4.814294 GTCGATTGGACGGCGGCT 62.814 66.667 14.66 0.00 35.61 5.52
829 832 3.154589 GGAACCTGGTCGATTGGAC 57.845 57.895 0.00 0.00 45.31 4.02
843 846 1.078356 GAGGAAGAAGGCGGGGAAC 60.078 63.158 0.00 0.00 0.00 3.62
844 847 2.298661 GGAGGAAGAAGGCGGGGAA 61.299 63.158 0.00 0.00 0.00 3.97
845 848 2.687566 GGAGGAAGAAGGCGGGGA 60.688 66.667 0.00 0.00 0.00 4.81
846 849 3.798511 GGGAGGAAGAAGGCGGGG 61.799 72.222 0.00 0.00 0.00 5.73
847 850 2.378634 ATGGGAGGAAGAAGGCGGG 61.379 63.158 0.00 0.00 0.00 6.13
848 851 1.153086 CATGGGAGGAAGAAGGCGG 60.153 63.158 0.00 0.00 0.00 6.13
849 852 0.462759 GACATGGGAGGAAGAAGGCG 60.463 60.000 0.00 0.00 0.00 5.52
850 853 0.462759 CGACATGGGAGGAAGAAGGC 60.463 60.000 0.00 0.00 0.00 4.35
851 854 0.462759 GCGACATGGGAGGAAGAAGG 60.463 60.000 0.00 0.00 0.00 3.46
852 855 0.807667 CGCGACATGGGAGGAAGAAG 60.808 60.000 0.00 0.00 0.00 2.85
853 856 1.218047 CGCGACATGGGAGGAAGAA 59.782 57.895 0.00 0.00 0.00 2.52
854 857 1.680989 TCGCGACATGGGAGGAAGA 60.681 57.895 3.71 0.00 34.10 2.87
855 858 1.519455 GTCGCGACATGGGAGGAAG 60.519 63.158 33.09 0.00 40.65 3.46
856 859 2.577059 GTCGCGACATGGGAGGAA 59.423 61.111 33.09 0.00 40.65 3.36
857 860 3.458163 GGTCGCGACATGGGAGGA 61.458 66.667 37.26 0.00 40.65 3.71
858 861 4.530857 GGGTCGCGACATGGGAGG 62.531 72.222 37.26 0.00 40.65 4.30
859 862 4.873129 CGGGTCGCGACATGGGAG 62.873 72.222 37.26 18.46 40.65 4.30
862 865 2.358193 TTATCCGGGTCGCGACATGG 62.358 60.000 37.26 34.16 0.00 3.66
863 866 0.939577 CTTATCCGGGTCGCGACATG 60.940 60.000 37.26 27.84 0.00 3.21
864 867 1.105167 TCTTATCCGGGTCGCGACAT 61.105 55.000 37.26 24.89 0.00 3.06
865 868 1.721664 CTCTTATCCGGGTCGCGACA 61.722 60.000 37.26 19.92 0.00 4.35
866 869 1.008767 CTCTTATCCGGGTCGCGAC 60.009 63.158 30.67 30.67 0.00 5.19
867 870 2.191513 CCTCTTATCCGGGTCGCGA 61.192 63.158 3.71 3.71 0.00 5.87
868 871 1.731433 TTCCTCTTATCCGGGTCGCG 61.731 60.000 0.00 0.00 0.00 5.87
875 878 2.362717 GTGACCTCCTTCCTCTTATCCG 59.637 54.545 0.00 0.00 0.00 4.18
1062 1068 4.194720 ACGGCTGGAGCGACGATC 62.195 66.667 4.11 4.11 43.26 3.69
1102 1108 2.117156 TGCGGGAGTAGCCGTCTAC 61.117 63.158 0.00 0.00 44.27 2.59
1245 1251 1.613925 TCACTTCGGTCAGAGAACAGG 59.386 52.381 0.00 0.00 0.00 4.00
1268 1280 5.050490 TGAACTCTGCTTTGACTTCAGTAC 58.950 41.667 0.00 0.00 0.00 2.73
1320 1332 3.121030 CTGTACTGCGGCACTGGC 61.121 66.667 0.00 0.00 40.13 4.85
1345 1357 0.530870 GAGAAGGTGCGTATCAGGGC 60.531 60.000 0.00 0.00 0.00 5.19
1395 1811 8.694540 TCATCCAAGTCTTTTCTTTTGATGAAA 58.305 29.630 12.09 0.00 38.59 2.69
1460 1876 1.730064 CCTTTAACACGGTGACATCGG 59.270 52.381 16.29 4.10 0.00 4.18
1507 1923 2.986290 CACCGGCACCACCATAGA 59.014 61.111 0.00 0.00 39.03 1.98
1577 1993 0.389817 CTCGAAAGTGACATCGGCCA 60.390 55.000 2.24 0.00 39.45 5.36
1707 2123 3.257375 CCTTGGGTTCCATATCGTCGATA 59.743 47.826 16.88 16.88 31.53 2.92
1743 2159 2.492484 GTCGGTGTAGATGAAGTGGAGT 59.508 50.000 0.00 0.00 0.00 3.85
1780 2196 3.376935 CTGCCTCATCGCCCTCGTT 62.377 63.158 0.00 0.00 36.96 3.85
1827 2243 3.370953 GCCTTTCCATGTCATACCTGTCT 60.371 47.826 0.00 0.00 0.00 3.41
1855 2271 1.522580 GCTTCCCCTCGCAGATCAC 60.523 63.158 0.00 0.00 33.89 3.06
1908 2324 4.254709 TCAGCCAGTGCCAGCGTT 62.255 61.111 0.00 0.00 38.69 4.84
2004 2420 1.683917 AGGTGCTCGTATCCATCAGAC 59.316 52.381 0.00 0.00 0.00 3.51
2128 2551 8.997323 GTGGGATATCATCACTTCTGAAAATAG 58.003 37.037 16.46 0.00 32.63 1.73
2219 2650 6.580041 CAGAAGATTTTCACCGTTTTCAGATG 59.420 38.462 0.00 0.00 35.70 2.90
2230 2661 9.617975 CTTCAGATTAAACAGAAGATTTTCACC 57.382 33.333 11.06 0.00 39.78 4.02
2238 2669 9.730705 AATGATGTCTTCAGATTAAACAGAAGA 57.269 29.630 14.08 14.08 42.85 2.87
2252 2683 5.409520 CAGAACTCGGAAAATGATGTCTTCA 59.590 40.000 0.00 0.00 39.12 3.02
2260 2691 6.693315 AGTTTTTCAGAACTCGGAAAATGA 57.307 33.333 15.39 3.10 44.81 2.57
2268 2699 4.021368 TCCCCTCTAGTTTTTCAGAACTCG 60.021 45.833 0.00 0.00 40.24 4.18
2269 2700 5.485209 TCCCCTCTAGTTTTTCAGAACTC 57.515 43.478 0.00 0.00 40.24 3.01
2282 2713 7.398904 CCTTAGGATTTCTAGAATCCCCTCTAG 59.601 44.444 21.03 17.68 45.70 2.43
2286 2717 6.056997 TCCTTAGGATTTCTAGAATCCCCT 57.943 41.667 21.03 19.89 45.70 4.79
2289 2720 8.904834 GGTTTTTCCTTAGGATTTCTAGAATCC 58.095 37.037 18.77 18.77 45.08 3.01
2290 2721 9.688091 AGGTTTTTCCTTAGGATTTCTAGAATC 57.312 33.333 5.89 6.23 45.67 2.52
2313 2744 6.265422 ACAAGCTGCTAACTTAAAATTGAGGT 59.735 34.615 0.90 0.00 0.00 3.85
2358 2789 8.626093 TGTTGTAACCACCGTAAATTTAAAAC 57.374 30.769 0.00 0.00 0.00 2.43
2363 2794 5.302313 ACCATGTTGTAACCACCGTAAATTT 59.698 36.000 0.00 0.00 0.00 1.82
2370 2801 0.239879 GCACCATGTTGTAACCACCG 59.760 55.000 0.00 0.00 0.00 4.94
2384 2815 6.765036 ACATTTGAATTAAACAACATGCACCA 59.235 30.769 0.00 0.00 0.00 4.17
2385 2816 7.042187 TCACATTTGAATTAAACAACATGCACC 60.042 33.333 0.00 0.00 0.00 5.01
2398 2829 9.214957 ACGAACTATGACTTCACATTTGAATTA 57.785 29.630 0.00 0.00 41.05 1.40
2399 2830 8.099364 ACGAACTATGACTTCACATTTGAATT 57.901 30.769 0.00 0.00 41.05 2.17
2400 2831 7.672983 ACGAACTATGACTTCACATTTGAAT 57.327 32.000 0.00 0.00 41.05 2.57
2409 2840 6.090763 CAGTGCAATTACGAACTATGACTTCA 59.909 38.462 0.00 0.00 0.00 3.02
2419 2850 3.536158 TGAAGCAGTGCAATTACGAAC 57.464 42.857 19.20 0.00 0.00 3.95
2425 2856 4.859304 TTCTGATTGAAGCAGTGCAATT 57.141 36.364 19.20 3.15 35.05 2.32
2429 2860 2.417933 ACGATTCTGATTGAAGCAGTGC 59.582 45.455 10.48 7.13 40.79 4.40
2440 2871 5.413309 AAAGAACTCTGGACGATTCTGAT 57.587 39.130 0.00 0.00 31.82 2.90
2466 2897 3.004315 TCAACTCCGGACAATTCTTTTGC 59.996 43.478 0.00 0.00 0.00 3.68
2469 2900 3.815809 TGTCAACTCCGGACAATTCTTT 58.184 40.909 0.00 0.00 41.96 2.52
2536 2967 7.765695 AACTGTAATGATTCATCACCAGTTT 57.234 32.000 21.10 12.45 43.43 2.66
2553 2984 6.590234 TCAGCTGAGTGAAGATAACTGTAA 57.410 37.500 13.74 0.00 0.00 2.41
2554 2985 6.183360 GGATCAGCTGAGTGAAGATAACTGTA 60.183 42.308 22.96 0.00 0.00 2.74
2626 3061 4.106029 TCCTGGACGTTATTTCTCGAAG 57.894 45.455 0.00 0.00 0.00 3.79
2629 3064 3.062234 GCTTTCCTGGACGTTATTTCTCG 59.938 47.826 0.00 0.00 0.00 4.04
2653 3088 8.846943 TTTAGTTTGACAAAGATAGAGCATCA 57.153 30.769 0.00 0.00 37.82 3.07
2664 3099 9.897744 TTATCTTGCAGATTTAGTTTGACAAAG 57.102 29.630 0.00 0.00 36.20 2.77
2696 3132 3.515502 CCTCTATCACCAGTCCAACAAGA 59.484 47.826 0.00 0.00 0.00 3.02
2708 3144 7.040494 GGTTTACTTCTTACACCTCTATCACC 58.960 42.308 0.00 0.00 28.89 4.02
2768 3204 3.188159 ACAGAAAAACTACCTGCGTCA 57.812 42.857 0.00 0.00 0.00 4.35
2793 3229 4.785511 ACACTGCGAAGTATAGTTCAGT 57.214 40.909 18.24 13.03 35.42 3.41
2856 3292 7.966812 ACATCCTCATTAGCAATCTACATGTA 58.033 34.615 5.25 5.25 0.00 2.29
2858 3294 7.443272 TGAACATCCTCATTAGCAATCTACATG 59.557 37.037 0.00 0.00 0.00 3.21
2890 3326 0.326927 TGGGAATTCGGAACCTGGAC 59.673 55.000 0.00 0.00 0.00 4.02
2922 3358 4.947147 GTGGGTGTTGCGGGCTCA 62.947 66.667 0.00 0.00 0.00 4.26
2924 3360 4.954970 CTGTGGGTGTTGCGGGCT 62.955 66.667 0.00 0.00 0.00 5.19
2925 3361 4.947147 TCTGTGGGTGTTGCGGGC 62.947 66.667 0.00 0.00 0.00 6.13
2927 3363 1.961277 GAGTCTGTGGGTGTTGCGG 60.961 63.158 0.00 0.00 0.00 5.69
2931 3367 2.654863 CTTTTGGAGTCTGTGGGTGTT 58.345 47.619 0.00 0.00 0.00 3.32
2982 3418 6.929049 CGGAGCTATTTATGACCTGATGTTTA 59.071 38.462 0.00 0.00 0.00 2.01
3049 3485 4.227527 AGTCGGGGATGTTATCTTCCTTTT 59.772 41.667 5.87 0.00 37.82 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.