Multiple sequence alignment - TraesCS7A01G212200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G212200 chr7A 100.000 3660 0 0 2925 6584 175690909 175694568 0.000000e+00 6759.0
1 TraesCS7A01G212200 chr7A 100.000 1812 0 0 1 1812 175687985 175689796 0.000000e+00 3347.0
2 TraesCS7A01G212200 chr7A 100.000 844 0 0 2007 2850 175689991 175690834 0.000000e+00 1559.0
3 TraesCS7A01G212200 chr7A 98.934 844 9 0 2007 2850 566067180 566066337 0.000000e+00 1509.0
4 TraesCS7A01G212200 chr7A 98.815 844 8 2 2007 2850 102038667 102039508 0.000000e+00 1502.0
5 TraesCS7A01G212200 chr7A 97.393 844 5 3 2007 2850 643968922 643968096 0.000000e+00 1421.0
6 TraesCS7A01G212200 chr7A 90.361 83 8 0 1131 1213 701528608 701528690 6.980000e-20 110.0
7 TraesCS7A01G212200 chr7A 82.569 109 14 5 1679 1785 43176088 43176193 2.530000e-14 91.6
8 TraesCS7A01G212200 chr7A 79.577 142 16 12 1671 1806 648573849 648573715 9.090000e-14 89.8
9 TraesCS7A01G212200 chr7A 95.455 44 1 1 2606 2648 608966005 608966048 1.180000e-07 69.4
10 TraesCS7A01G212200 chr7D 91.284 3270 182 42 2925 6132 173708246 173711474 0.000000e+00 4364.0
11 TraesCS7A01G212200 chr7D 94.472 1393 52 12 239 1619 173706654 173708033 0.000000e+00 2122.0
12 TraesCS7A01G212200 chr7D 92.727 165 10 1 6130 6292 173711554 173711718 3.070000e-58 237.0
13 TraesCS7A01G212200 chr7D 85.000 220 20 8 6322 6529 173712182 173712400 1.860000e-50 211.0
14 TraesCS7A01G212200 chr7D 83.511 188 12 5 1612 1793 173708061 173708235 2.460000e-34 158.0
15 TraesCS7A01G212200 chr7B 96.054 2129 50 5 4152 6279 138471449 138473544 0.000000e+00 3435.0
16 TraesCS7A01G212200 chr7B 92.408 1541 65 23 306 1808 138468400 138469926 0.000000e+00 2150.0
17 TraesCS7A01G212200 chr7B 94.882 1231 36 9 2928 4155 138469952 138471158 0.000000e+00 1899.0
18 TraesCS7A01G212200 chr7B 91.153 633 27 10 2007 2638 449949057 449948453 0.000000e+00 832.0
19 TraesCS7A01G212200 chr7B 89.597 298 27 3 2007 2301 449948237 449948533 6.230000e-100 375.0
20 TraesCS7A01G212200 chr7B 91.322 242 20 1 1 241 434934934 434934693 4.920000e-86 329.0
21 TraesCS7A01G212200 chr7B 93.659 205 13 0 2646 2850 449948489 449948285 2.310000e-79 307.0
22 TraesCS7A01G212200 chr7B 91.156 147 11 2 6279 6424 138473746 138473891 1.450000e-46 198.0
23 TraesCS7A01G212200 chr3A 95.503 845 36 2 2007 2850 672634272 672635115 0.000000e+00 1349.0
24 TraesCS7A01G212200 chr3A 94.554 202 11 0 2646 2847 672634524 672634323 4.960000e-81 313.0
25 TraesCS7A01G212200 chr3A 88.627 255 26 3 2007 2259 672635163 672634910 2.310000e-79 307.0
26 TraesCS7A01G212200 chr3A 80.153 131 16 9 1679 1806 683270288 683270165 9.090000e-14 89.8
27 TraesCS7A01G212200 chr5B 95.171 849 35 4 2007 2850 455353478 455352631 0.000000e+00 1336.0
28 TraesCS7A01G212200 chr5B 89.804 255 23 3 2007 2259 455352583 455352836 2.290000e-84 324.0
29 TraesCS7A01G212200 chr5B 94.554 202 11 0 2646 2847 455353226 455353427 4.960000e-81 313.0
30 TraesCS7A01G212200 chr5B 93.011 186 13 0 2655 2840 613155301 613155486 8.410000e-69 272.0
31 TraesCS7A01G212200 chr2B 91.213 239 20 1 1 239 363761673 363761910 2.290000e-84 324.0
32 TraesCS7A01G212200 chr2B 89.344 244 26 0 1 244 708705010 708704767 2.310000e-79 307.0
33 TraesCS7A01G212200 chr2B 83.133 249 40 2 2007 2254 741202701 741202948 6.640000e-55 226.0
34 TraesCS7A01G212200 chr2B 81.275 251 41 4 2007 2254 796927299 796927546 1.450000e-46 198.0
35 TraesCS7A01G212200 chr6B 90.833 240 22 0 1 240 574468518 574468279 8.240000e-84 322.0
36 TraesCS7A01G212200 chr6B 84.106 302 48 0 1123 1424 565705943 565705642 6.460000e-75 292.0
37 TraesCS7A01G212200 chr6B 80.153 131 15 9 1679 1806 4262056 4262178 3.270000e-13 87.9
38 TraesCS7A01G212200 chr4B 90.795 239 22 0 1 239 585010981 585011219 2.960000e-83 320.0
39 TraesCS7A01G212200 chr4B 81.818 132 14 9 1677 1806 654597501 654597378 1.170000e-17 102.0
40 TraesCS7A01G212200 chr4B 80.142 141 17 10 1677 1811 95880670 95880535 1.950000e-15 95.3
41 TraesCS7A01G212200 chr2D 90.496 242 20 1 1 239 298459627 298459386 3.830000e-82 316.0
42 TraesCS7A01G212200 chr1D 90.456 241 22 1 1 240 487831053 487831293 3.830000e-82 316.0
43 TraesCS7A01G212200 chr5D 89.516 248 22 3 1 245 541534487 541534733 1.780000e-80 311.0
44 TraesCS7A01G212200 chr6D 89.712 243 23 1 1 241 58168451 58168693 6.410000e-80 309.0
45 TraesCS7A01G212200 chr6D 83.279 305 51 0 1120 1424 380429836 380430140 1.400000e-71 281.0
46 TraesCS7A01G212200 chr6D 86.758 219 19 3 2346 2554 424182963 424183181 1.100000e-57 235.0
47 TraesCS7A01G212200 chr6A 83.775 302 49 0 1123 1424 520588465 520588164 3.000000e-73 287.0
48 TraesCS7A01G212200 chr1A 81.651 109 16 4 1679 1785 16518574 16518468 3.270000e-13 87.9
49 TraesCS7A01G212200 chr1A 81.579 114 11 7 1676 1789 50702948 50703051 1.180000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G212200 chr7A 175687985 175694568 6583 False 3888.333333 6759 100.0000 1 6584 3 chr7A.!!$F5 6583
1 TraesCS7A01G212200 chr7A 566066337 566067180 843 True 1509.000000 1509 98.9340 2007 2850 1 chr7A.!!$R1 843
2 TraesCS7A01G212200 chr7A 102038667 102039508 841 False 1502.000000 1502 98.8150 2007 2850 1 chr7A.!!$F2 843
3 TraesCS7A01G212200 chr7A 643968096 643968922 826 True 1421.000000 1421 97.3930 2007 2850 1 chr7A.!!$R2 843
4 TraesCS7A01G212200 chr7D 173706654 173712400 5746 False 1418.400000 4364 89.3988 239 6529 5 chr7D.!!$F1 6290
5 TraesCS7A01G212200 chr7B 138468400 138473891 5491 False 1920.500000 3435 93.6250 306 6424 4 chr7B.!!$F2 6118
6 TraesCS7A01G212200 chr7B 449948285 449949057 772 True 569.500000 832 92.4060 2007 2850 2 chr7B.!!$R2 843
7 TraesCS7A01G212200 chr3A 672634272 672635115 843 False 1349.000000 1349 95.5030 2007 2850 1 chr3A.!!$F1 843
8 TraesCS7A01G212200 chr3A 672634323 672635163 840 True 310.000000 313 91.5905 2007 2847 2 chr3A.!!$R2 840
9 TraesCS7A01G212200 chr5B 455352631 455353478 847 True 1336.000000 1336 95.1710 2007 2850 1 chr5B.!!$R1 843
10 TraesCS7A01G212200 chr5B 455352583 455353427 844 False 318.500000 324 92.1790 2007 2847 2 chr5B.!!$F2 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.249784 CATGATGCAGAGACCGAGGG 60.250 60.000 0.00 0.0 0.00 4.30 F
220 221 0.760567 ATGCAGAGACCGAGGGCATA 60.761 55.000 0.00 0.0 42.86 3.14 F
221 222 1.068250 GCAGAGACCGAGGGCATAC 59.932 63.158 0.00 0.0 0.00 2.39 F
538 547 1.277842 TCCGTTTTCTGATGCAGCCTA 59.722 47.619 0.00 0.0 0.00 3.93 F
1482 1503 1.670811 AGTCTGGTGTTCGTTTGCTTG 59.329 47.619 0.00 0.0 0.00 4.01 F
3128 3508 0.609406 GGGCCAGTTTGAGGGAGTTC 60.609 60.000 4.39 0.0 0.00 3.01 F
4504 5192 2.098117 CCTGGAAATCTTCATTGACCGC 59.902 50.000 0.00 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 1483 1.132262 ACACAAGCAAACGAACACCAG 59.868 47.619 0.00 0.0 0.00 4.00 R
1474 1492 1.946768 TCAGCCTGTACACAAGCAAAC 59.053 47.619 5.79 0.0 35.83 2.93 R
1482 1503 4.116238 GCTAGAAGATTCAGCCTGTACAC 58.884 47.826 0.00 0.0 0.00 2.90 R
1525 1546 4.621769 AGCTACCCAATGGAGTACTAAGT 58.378 43.478 0.00 0.0 34.81 2.24 R
3310 3690 2.159393 TGCTGTCAGTTGAAGCACAAAC 60.159 45.455 0.93 0.0 41.83 2.93 R
4822 5516 1.064060 GGAATGCCGAGGTTTGAATCG 59.936 52.381 0.00 0.0 38.65 3.34 R
5712 6422 0.037605 AATTGAGTCGACGGTGGTCC 60.038 55.000 10.46 0.0 40.17 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.398134 CGATTCGGATGGCGCTCG 61.398 66.667 7.64 1.47 0.00 5.03
32 33 3.706668 GATTCGGATGGCGCTCGC 61.707 66.667 7.64 5.60 41.06 5.03
33 34 4.529219 ATTCGGATGGCGCTCGCA 62.529 61.111 16.36 0.00 44.11 5.10
34 35 3.814615 ATTCGGATGGCGCTCGCAT 62.815 57.895 16.36 1.47 44.11 4.73
35 36 2.434658 ATTCGGATGGCGCTCGCATA 62.435 55.000 16.36 4.84 44.11 3.14
36 37 2.636778 TTCGGATGGCGCTCGCATAA 62.637 55.000 16.36 1.48 44.11 1.90
37 38 2.939022 GGATGGCGCTCGCATAAC 59.061 61.111 16.36 3.44 44.11 1.89
38 39 1.887242 GGATGGCGCTCGCATAACA 60.887 57.895 16.36 5.08 44.11 2.41
39 40 1.566563 GATGGCGCTCGCATAACAG 59.433 57.895 16.36 0.00 44.11 3.16
40 41 1.835483 GATGGCGCTCGCATAACAGG 61.835 60.000 16.36 0.00 44.11 4.00
41 42 2.202878 GGCGCTCGCATAACAGGA 60.203 61.111 16.36 0.00 44.11 3.86
42 43 1.595382 GGCGCTCGCATAACAGGAT 60.595 57.895 16.36 0.00 44.11 3.24
43 44 0.319555 GGCGCTCGCATAACAGGATA 60.320 55.000 16.36 0.00 44.11 2.59
44 45 1.063806 GCGCTCGCATAACAGGATAG 58.936 55.000 9.59 0.00 41.49 2.08
45 46 1.335964 GCGCTCGCATAACAGGATAGA 60.336 52.381 9.59 0.00 41.49 1.98
46 47 2.862530 GCGCTCGCATAACAGGATAGAA 60.863 50.000 9.59 0.00 41.49 2.10
47 48 2.983136 CGCTCGCATAACAGGATAGAAG 59.017 50.000 0.00 0.00 0.00 2.85
48 49 3.551046 CGCTCGCATAACAGGATAGAAGT 60.551 47.826 0.00 0.00 0.00 3.01
49 50 3.984633 GCTCGCATAACAGGATAGAAGTC 59.015 47.826 0.00 0.00 0.00 3.01
50 51 4.261825 GCTCGCATAACAGGATAGAAGTCT 60.262 45.833 0.00 0.00 0.00 3.24
51 52 5.048643 GCTCGCATAACAGGATAGAAGTCTA 60.049 44.000 0.00 0.00 0.00 2.59
52 53 6.561737 TCGCATAACAGGATAGAAGTCTAG 57.438 41.667 0.00 0.00 0.00 2.43
53 54 6.296803 TCGCATAACAGGATAGAAGTCTAGA 58.703 40.000 0.00 0.00 0.00 2.43
54 55 6.428465 TCGCATAACAGGATAGAAGTCTAGAG 59.572 42.308 0.00 0.00 0.00 2.43
55 56 6.428465 CGCATAACAGGATAGAAGTCTAGAGA 59.572 42.308 0.00 0.00 0.00 3.10
56 57 7.360861 CGCATAACAGGATAGAAGTCTAGAGAG 60.361 44.444 0.00 0.00 0.00 3.20
57 58 7.574967 GCATAACAGGATAGAAGTCTAGAGAGC 60.575 44.444 0.00 0.00 0.00 4.09
58 59 5.646692 ACAGGATAGAAGTCTAGAGAGCT 57.353 43.478 0.00 0.00 0.00 4.09
59 60 6.013554 ACAGGATAGAAGTCTAGAGAGCTT 57.986 41.667 0.00 0.00 0.00 3.74
60 61 7.144234 ACAGGATAGAAGTCTAGAGAGCTTA 57.856 40.000 0.00 0.00 0.00 3.09
61 62 7.755618 ACAGGATAGAAGTCTAGAGAGCTTAT 58.244 38.462 0.00 0.00 0.00 1.73
62 63 7.883311 ACAGGATAGAAGTCTAGAGAGCTTATC 59.117 40.741 0.00 0.00 0.00 1.75
63 64 7.336931 CAGGATAGAAGTCTAGAGAGCTTATCC 59.663 44.444 15.72 15.72 0.00 2.59
64 65 7.239773 AGGATAGAAGTCTAGAGAGCTTATCCT 59.760 40.741 18.26 18.26 0.00 3.24
65 66 7.888546 GGATAGAAGTCTAGAGAGCTTATCCTT 59.111 40.741 15.99 5.15 0.00 3.36
66 67 8.863872 ATAGAAGTCTAGAGAGCTTATCCTTC 57.136 38.462 0.00 0.00 0.00 3.46
67 68 6.911308 AGAAGTCTAGAGAGCTTATCCTTCT 58.089 40.000 9.49 9.49 33.26 2.85
68 69 7.354312 AGAAGTCTAGAGAGCTTATCCTTCTT 58.646 38.462 9.49 0.00 34.12 2.52
69 70 8.499406 AGAAGTCTAGAGAGCTTATCCTTCTTA 58.501 37.037 9.49 0.00 34.12 2.10
70 71 9.297037 GAAGTCTAGAGAGCTTATCCTTCTTAT 57.703 37.037 0.00 0.00 0.00 1.73
71 72 9.654919 AAGTCTAGAGAGCTTATCCTTCTTATT 57.345 33.333 0.00 0.00 0.00 1.40
74 75 9.523168 TCTAGAGAGCTTATCCTTCTTATTACC 57.477 37.037 0.00 0.00 0.00 2.85
75 76 7.222000 AGAGAGCTTATCCTTCTTATTACCG 57.778 40.000 0.00 0.00 0.00 4.02
76 77 6.778559 AGAGAGCTTATCCTTCTTATTACCGT 59.221 38.462 0.00 0.00 0.00 4.83
77 78 7.943447 AGAGAGCTTATCCTTCTTATTACCGTA 59.057 37.037 0.00 0.00 0.00 4.02
78 79 8.653036 AGAGCTTATCCTTCTTATTACCGTAT 57.347 34.615 0.00 0.00 0.00 3.06
79 80 8.741841 AGAGCTTATCCTTCTTATTACCGTATC 58.258 37.037 0.00 0.00 0.00 2.24
80 81 7.536855 AGCTTATCCTTCTTATTACCGTATCG 58.463 38.462 0.00 0.00 0.00 2.92
91 92 2.849081 CCGTATCGGTTGCCTTTGT 58.151 52.632 0.00 0.00 42.73 2.83
92 93 0.725117 CCGTATCGGTTGCCTTTGTC 59.275 55.000 0.00 0.00 42.73 3.18
93 94 1.434555 CGTATCGGTTGCCTTTGTCA 58.565 50.000 0.00 0.00 0.00 3.58
94 95 1.393539 CGTATCGGTTGCCTTTGTCAG 59.606 52.381 0.00 0.00 0.00 3.51
95 96 1.130561 GTATCGGTTGCCTTTGTCAGC 59.869 52.381 0.00 0.00 0.00 4.26
96 97 0.537143 ATCGGTTGCCTTTGTCAGCA 60.537 50.000 0.00 0.00 37.18 4.41
97 98 0.537143 TCGGTTGCCTTTGTCAGCAT 60.537 50.000 0.00 0.00 39.11 3.79
98 99 0.387622 CGGTTGCCTTTGTCAGCATG 60.388 55.000 0.00 0.00 39.11 4.06
99 100 0.675633 GGTTGCCTTTGTCAGCATGT 59.324 50.000 0.00 0.00 39.11 3.21
100 101 1.885887 GGTTGCCTTTGTCAGCATGTA 59.114 47.619 0.00 0.00 39.11 2.29
101 102 2.295909 GGTTGCCTTTGTCAGCATGTAA 59.704 45.455 0.00 0.00 39.11 2.41
102 103 3.056607 GGTTGCCTTTGTCAGCATGTAAT 60.057 43.478 0.00 0.00 39.11 1.89
103 104 4.559153 GTTGCCTTTGTCAGCATGTAATT 58.441 39.130 0.00 0.00 39.11 1.40
104 105 5.336372 GGTTGCCTTTGTCAGCATGTAATTA 60.336 40.000 0.00 0.00 39.11 1.40
105 106 6.332630 GTTGCCTTTGTCAGCATGTAATTAT 58.667 36.000 0.00 0.00 39.11 1.28
106 107 6.135290 TGCCTTTGTCAGCATGTAATTATC 57.865 37.500 0.00 0.00 37.40 1.75
107 108 5.067674 TGCCTTTGTCAGCATGTAATTATCC 59.932 40.000 0.00 0.00 37.40 2.59
108 109 5.300286 GCCTTTGTCAGCATGTAATTATCCT 59.700 40.000 0.00 0.00 37.40 3.24
109 110 6.183360 GCCTTTGTCAGCATGTAATTATCCTT 60.183 38.462 0.00 0.00 37.40 3.36
110 111 7.631377 GCCTTTGTCAGCATGTAATTATCCTTT 60.631 37.037 0.00 0.00 37.40 3.11
111 112 8.253113 CCTTTGTCAGCATGTAATTATCCTTTT 58.747 33.333 0.00 0.00 37.40 2.27
112 113 9.643693 CTTTGTCAGCATGTAATTATCCTTTTT 57.356 29.630 0.00 0.00 37.40 1.94
132 133 6.930667 TTTTTACTTTGCTCTACTCCGTTT 57.069 33.333 0.00 0.00 0.00 3.60
133 134 5.917541 TTTACTTTGCTCTACTCCGTTTG 57.082 39.130 0.00 0.00 0.00 2.93
134 135 2.143925 ACTTTGCTCTACTCCGTTTGC 58.856 47.619 0.00 0.00 0.00 3.68
135 136 1.126846 CTTTGCTCTACTCCGTTTGCG 59.873 52.381 0.00 0.00 37.95 4.85
145 146 3.960237 CGTTTGCGGGCTGTAAGA 58.040 55.556 0.00 0.00 34.07 2.10
146 147 1.495951 CGTTTGCGGGCTGTAAGAC 59.504 57.895 0.00 0.00 46.31 3.01
147 148 0.949105 CGTTTGCGGGCTGTAAGACT 60.949 55.000 0.00 0.00 46.21 3.24
148 149 1.235724 GTTTGCGGGCTGTAAGACTT 58.764 50.000 0.00 0.00 46.21 3.01
149 150 1.607148 GTTTGCGGGCTGTAAGACTTT 59.393 47.619 0.00 0.00 46.21 2.66
150 151 1.975660 TTGCGGGCTGTAAGACTTTT 58.024 45.000 0.00 0.00 46.21 2.27
151 152 2.843401 TGCGGGCTGTAAGACTTTTA 57.157 45.000 0.00 0.00 46.21 1.52
152 153 3.343941 TGCGGGCTGTAAGACTTTTAT 57.656 42.857 0.00 0.00 46.21 1.40
153 154 4.475051 TGCGGGCTGTAAGACTTTTATA 57.525 40.909 0.00 0.00 46.21 0.98
154 155 4.834534 TGCGGGCTGTAAGACTTTTATAA 58.165 39.130 0.00 0.00 46.21 0.98
155 156 4.632688 TGCGGGCTGTAAGACTTTTATAAC 59.367 41.667 0.00 0.00 46.21 1.89
156 157 4.260091 GCGGGCTGTAAGACTTTTATAACG 60.260 45.833 0.00 0.00 46.21 3.18
157 158 5.104374 CGGGCTGTAAGACTTTTATAACGA 58.896 41.667 0.00 0.00 46.21 3.85
158 159 5.751990 CGGGCTGTAAGACTTTTATAACGAT 59.248 40.000 0.00 0.00 46.21 3.73
159 160 6.919662 CGGGCTGTAAGACTTTTATAACGATA 59.080 38.462 0.00 0.00 46.21 2.92
160 161 7.096312 CGGGCTGTAAGACTTTTATAACGATAC 60.096 40.741 0.00 0.00 46.21 2.24
161 162 7.924947 GGGCTGTAAGACTTTTATAACGATACT 59.075 37.037 0.00 0.00 46.21 2.12
162 163 9.310716 GGCTGTAAGACTTTTATAACGATACTT 57.689 33.333 0.00 0.00 40.68 2.24
191 192 9.748708 TGAATTTTTAATAAGATGGCTGCATAC 57.251 29.630 0.50 0.00 0.00 2.39
192 193 9.748708 GAATTTTTAATAAGATGGCTGCATACA 57.251 29.630 0.50 0.00 0.00 2.29
194 195 9.918630 ATTTTTAATAAGATGGCTGCATACATC 57.081 29.630 18.15 18.15 42.87 3.06
195 196 8.462589 TTTTAATAAGATGGCTGCATACATCA 57.537 30.769 24.21 11.34 44.50 3.07
196 197 8.640063 TTTAATAAGATGGCTGCATACATCAT 57.360 30.769 24.21 18.06 44.50 2.45
197 198 6.754702 AATAAGATGGCTGCATACATCATC 57.245 37.500 24.21 15.61 44.50 2.92
198 199 3.782656 AGATGGCTGCATACATCATCA 57.217 42.857 24.21 0.89 44.50 3.07
199 200 4.302559 AGATGGCTGCATACATCATCAT 57.697 40.909 24.21 8.29 44.50 2.45
200 201 4.010349 AGATGGCTGCATACATCATCATG 58.990 43.478 24.21 0.00 44.50 3.07
201 202 3.495434 TGGCTGCATACATCATCATGA 57.505 42.857 0.00 0.00 33.72 3.07
202 203 4.028993 TGGCTGCATACATCATCATGAT 57.971 40.909 1.18 1.18 37.65 2.45
212 213 2.521105 TCATCATGATGCAGAGACCG 57.479 50.000 27.68 4.34 38.65 4.79
213 214 2.034124 TCATCATGATGCAGAGACCGA 58.966 47.619 27.68 7.27 38.65 4.69
214 215 2.035576 TCATCATGATGCAGAGACCGAG 59.964 50.000 27.68 3.12 38.65 4.63
215 216 0.749049 TCATGATGCAGAGACCGAGG 59.251 55.000 0.00 0.00 0.00 4.63
216 217 0.249784 CATGATGCAGAGACCGAGGG 60.250 60.000 0.00 0.00 0.00 4.30
217 218 2.037620 ATGATGCAGAGACCGAGGGC 62.038 60.000 0.00 0.00 0.00 5.19
218 219 2.685017 ATGCAGAGACCGAGGGCA 60.685 61.111 0.00 0.00 39.03 5.36
219 220 2.037620 GATGCAGAGACCGAGGGCAT 62.038 60.000 0.00 0.00 46.91 4.40
220 221 0.760567 ATGCAGAGACCGAGGGCATA 60.761 55.000 0.00 0.00 42.86 3.14
221 222 1.068250 GCAGAGACCGAGGGCATAC 59.932 63.158 0.00 0.00 0.00 2.39
222 223 1.742768 CAGAGACCGAGGGCATACC 59.257 63.158 0.00 0.00 40.67 2.73
300 301 8.982685 CATGACTCTGCGTACATTAGATATTTT 58.017 33.333 0.00 0.00 0.00 1.82
340 341 1.906574 TCAAGACGCTGGTCCCTAATT 59.093 47.619 0.00 0.00 44.54 1.40
512 521 1.629043 ACCGTAGACTGAGAAGGCAA 58.371 50.000 0.00 0.00 0.00 4.52
513 522 1.968493 ACCGTAGACTGAGAAGGCAAA 59.032 47.619 0.00 0.00 0.00 3.68
522 531 3.077359 CTGAGAAGGCAAATTTCTCCGT 58.923 45.455 10.59 0.00 46.35 4.69
538 547 1.277842 TCCGTTTTCTGATGCAGCCTA 59.722 47.619 0.00 0.00 0.00 3.93
627 639 3.179443 TCTGTCTCAACACACAAGGAC 57.821 47.619 0.00 0.00 0.00 3.85
869 881 5.976534 CGTTGAAATTCATGGTTGTTCTTCA 59.023 36.000 0.00 0.00 0.00 3.02
897 909 2.134346 GCTCTCGAGGCATTCTGATTC 58.866 52.381 13.56 0.00 0.00 2.52
956 968 3.011949 TCCGCAAAGATTGTGCTTTTC 57.988 42.857 0.00 0.00 39.95 2.29
957 969 2.360483 TCCGCAAAGATTGTGCTTTTCA 59.640 40.909 0.00 0.00 39.95 2.69
976 989 3.664107 TCACTTCTGTTGGATTCTTCCG 58.336 45.455 0.00 0.00 45.89 4.30
1465 1483 6.237861 GCTGTCTCGGTGTTATTTATTCAGTC 60.238 42.308 0.00 0.00 0.00 3.51
1474 1492 7.234384 GTGTTATTTATTCAGTCTGGTGTTCG 58.766 38.462 0.00 0.00 0.00 3.95
1482 1503 1.670811 AGTCTGGTGTTCGTTTGCTTG 59.329 47.619 0.00 0.00 0.00 4.01
1502 1523 5.724328 CTTGTGTACAGGCTGAATCTTCTA 58.276 41.667 23.66 0.00 0.00 2.10
1524 1545 5.072040 AGCGGTTTTGGAATCTTATTTGG 57.928 39.130 0.00 0.00 0.00 3.28
1525 1546 4.770010 AGCGGTTTTGGAATCTTATTTGGA 59.230 37.500 0.00 0.00 0.00 3.53
1566 1590 4.227197 AGCTAATACACCACTATCAGGCT 58.773 43.478 0.00 0.00 0.00 4.58
1647 1707 3.271706 TTGCTCCGTTGCTGCATGC 62.272 57.895 11.82 11.82 43.25 4.06
1718 1778 1.929836 CAGGACTCTGCTGCGTATTTC 59.070 52.381 0.00 0.00 33.86 2.17
1761 1822 2.393764 CACAAACGAAATGGTTCAGGC 58.606 47.619 0.00 0.00 32.89 4.85
1762 1823 1.001815 ACAAACGAAATGGTTCAGGCG 60.002 47.619 0.00 0.00 32.89 5.52
1763 1824 1.265635 CAAACGAAATGGTTCAGGCGA 59.734 47.619 0.00 0.00 32.89 5.54
1764 1825 1.600023 AACGAAATGGTTCAGGCGAA 58.400 45.000 0.00 0.00 32.89 4.70
1765 1826 1.600023 ACGAAATGGTTCAGGCGAAA 58.400 45.000 0.00 0.00 32.89 3.46
1766 1827 1.265905 ACGAAATGGTTCAGGCGAAAC 59.734 47.619 0.00 1.07 39.47 2.78
2690 3068 4.701437 AGGGACCCACCAGGCCAT 62.701 66.667 14.60 0.00 40.58 4.40
3071 3451 3.118992 GGATGCCTTTGAAAATCCAGGAC 60.119 47.826 0.00 0.00 38.78 3.85
3119 3499 1.474330 GTATTCCCAGGGCCAGTTTG 58.526 55.000 6.18 0.00 0.00 2.93
3128 3508 0.609406 GGGCCAGTTTGAGGGAGTTC 60.609 60.000 4.39 0.00 0.00 3.01
3135 3515 4.020218 CCAGTTTGAGGGAGTTCATGTCTA 60.020 45.833 0.00 0.00 0.00 2.59
3143 3523 5.529289 AGGGAGTTCATGTCTACCTGAATA 58.471 41.667 18.68 0.00 43.89 1.75
3220 3600 7.652909 TGCAAAAGGACAATGAAAGAATAAGTG 59.347 33.333 0.00 0.00 0.00 3.16
3228 3608 9.436957 GACAATGAAAGAATAAGTGGTCTCTTA 57.563 33.333 0.00 0.00 34.94 2.10
3237 3617 7.786943 AGAATAAGTGGTCTCTTATCTCCATCA 59.213 37.037 5.96 0.00 38.98 3.07
3289 3669 3.188159 TCGAGTGTTAAGCCTGTTGTT 57.812 42.857 0.00 0.00 0.00 2.83
3310 3690 2.958355 TCACCAGGAGGCAAAAGAAAAG 59.042 45.455 0.00 0.00 39.06 2.27
3474 3863 2.932663 GTTGCACCTCAGCAGCTAA 58.067 52.632 0.00 0.00 46.54 3.09
3487 3876 4.005650 CAGCAGCTAAGAGAACCAAATCA 58.994 43.478 0.00 0.00 0.00 2.57
3488 3877 4.639310 CAGCAGCTAAGAGAACCAAATCAT 59.361 41.667 0.00 0.00 0.00 2.45
3489 3878 5.125097 CAGCAGCTAAGAGAACCAAATCATT 59.875 40.000 0.00 0.00 0.00 2.57
3490 3879 5.125097 AGCAGCTAAGAGAACCAAATCATTG 59.875 40.000 0.00 0.00 36.25 2.82
3493 3882 7.630082 GCAGCTAAGAGAACCAAATCATTGAAT 60.630 37.037 0.00 0.00 38.94 2.57
3494 3883 8.248945 CAGCTAAGAGAACCAAATCATTGAATT 58.751 33.333 0.00 0.00 38.94 2.17
3495 3884 8.248945 AGCTAAGAGAACCAAATCATTGAATTG 58.751 33.333 7.37 7.37 38.94 2.32
3496 3885 8.246180 GCTAAGAGAACCAAATCATTGAATTGA 58.754 33.333 14.65 0.00 38.94 2.57
3497 3886 9.784680 CTAAGAGAACCAAATCATTGAATTGAG 57.215 33.333 14.65 8.20 38.94 3.02
3498 3887 6.628185 AGAGAACCAAATCATTGAATTGAGC 58.372 36.000 14.65 5.03 38.94 4.26
3500 3889 6.761312 AGAACCAAATCATTGAATTGAGCAA 58.239 32.000 14.65 0.00 38.94 3.91
3501 3890 7.218614 AGAACCAAATCATTGAATTGAGCAAA 58.781 30.769 14.65 0.00 38.94 3.68
3502 3891 7.716123 AGAACCAAATCATTGAATTGAGCAAAA 59.284 29.630 14.65 0.00 38.94 2.44
3503 3892 7.429636 ACCAAATCATTGAATTGAGCAAAAG 57.570 32.000 14.65 0.86 38.94 2.27
3504 3893 6.072893 ACCAAATCATTGAATTGAGCAAAAGC 60.073 34.615 14.65 0.00 38.94 3.51
3505 3894 6.148811 CCAAATCATTGAATTGAGCAAAAGCT 59.851 34.615 14.65 0.00 38.94 3.74
3578 3967 5.182760 AGAGTTGATGAAGAGAAATGTTGGC 59.817 40.000 0.00 0.00 0.00 4.52
3579 3968 4.219288 AGTTGATGAAGAGAAATGTTGGCC 59.781 41.667 0.00 0.00 0.00 5.36
3580 3969 4.038271 TGATGAAGAGAAATGTTGGCCT 57.962 40.909 3.32 0.00 0.00 5.19
3581 3970 4.410099 TGATGAAGAGAAATGTTGGCCTT 58.590 39.130 3.32 0.00 0.00 4.35
3582 3971 4.834496 TGATGAAGAGAAATGTTGGCCTTT 59.166 37.500 3.32 0.00 0.00 3.11
3583 3972 5.305128 TGATGAAGAGAAATGTTGGCCTTTT 59.695 36.000 3.32 0.00 0.00 2.27
3584 3973 5.612725 TGAAGAGAAATGTTGGCCTTTTT 57.387 34.783 3.32 0.00 0.00 1.94
3585 3974 6.723298 TGAAGAGAAATGTTGGCCTTTTTA 57.277 33.333 3.32 0.00 0.00 1.52
3586 3975 6.748132 TGAAGAGAAATGTTGGCCTTTTTAG 58.252 36.000 3.32 0.00 0.00 1.85
3587 3976 6.549364 TGAAGAGAAATGTTGGCCTTTTTAGA 59.451 34.615 3.32 0.00 0.00 2.10
3588 3977 6.976934 AGAGAAATGTTGGCCTTTTTAGAA 57.023 33.333 3.32 0.00 0.00 2.10
3589 3978 7.360113 AGAGAAATGTTGGCCTTTTTAGAAA 57.640 32.000 3.32 0.00 0.00 2.52
3590 3979 7.966812 AGAGAAATGTTGGCCTTTTTAGAAAT 58.033 30.769 3.32 0.00 0.00 2.17
3591 3980 7.874528 AGAGAAATGTTGGCCTTTTTAGAAATG 59.125 33.333 3.32 0.00 0.00 2.32
3592 3981 7.508687 AGAAATGTTGGCCTTTTTAGAAATGT 58.491 30.769 3.32 0.00 0.00 2.71
3593 3982 7.992608 AGAAATGTTGGCCTTTTTAGAAATGTT 59.007 29.630 3.32 0.00 0.00 2.71
3594 3983 7.495135 AATGTTGGCCTTTTTAGAAATGTTG 57.505 32.000 3.32 0.00 0.00 3.33
4280 4963 7.914871 CGGAATTGCTATTGTGAAATTGATACA 59.085 33.333 0.00 0.00 0.00 2.29
4383 5066 5.590259 AGTTCTTGTCACTGCTTATGTTTGT 59.410 36.000 0.00 0.00 0.00 2.83
4467 5155 6.611613 ATCAGAAAGATGGGCGATAAGATA 57.388 37.500 0.00 0.00 35.06 1.98
4504 5192 2.098117 CCTGGAAATCTTCATTGACCGC 59.902 50.000 0.00 0.00 0.00 5.68
4822 5516 1.325943 GCTGATGTGCTCGCTAACTTC 59.674 52.381 0.00 0.00 0.00 3.01
4925 5619 1.704628 TCCCCATGATATTCCACGCAT 59.295 47.619 0.00 0.00 0.00 4.73
5142 5836 5.768317 TGCAATCACTTTAAGGTAAGTTGC 58.232 37.500 18.58 18.58 38.74 4.17
5311 6014 1.266718 TGGTGACTTTGAAATGCGCTC 59.733 47.619 9.73 0.00 0.00 5.03
5325 6028 1.160329 GCGCTCGTGGATTATGGCTT 61.160 55.000 0.00 0.00 0.00 4.35
5430 6139 6.441093 TTGTGATCTAATTCATGTGGCTTC 57.559 37.500 0.00 0.00 0.00 3.86
5448 6157 3.435275 CTTCCGATATCTCAGGGATCCA 58.565 50.000 15.23 0.00 35.98 3.41
5556 6265 6.369890 ACAGTGATGCATATTCGATATTCCAC 59.630 38.462 0.00 0.00 0.00 4.02
5617 6327 1.650528 AGAGGAGTCAAGGGTGAAGG 58.349 55.000 0.00 0.00 34.87 3.46
5681 6391 9.177608 TCAATAAGAACATCATTTAAGAGGGTG 57.822 33.333 0.00 0.00 0.00 4.61
5712 6422 2.598192 CGGCTTTGCGAATTATTTGGTG 59.402 45.455 0.00 0.00 0.00 4.17
5716 6426 3.859411 TTGCGAATTATTTGGTGGACC 57.141 42.857 0.00 0.00 0.00 4.46
5734 6444 1.614903 ACCACCGTCGACTCAATTGTA 59.385 47.619 14.70 0.00 0.00 2.41
5780 6490 2.426738 GGATGGATGTGCAAAATTCGGA 59.573 45.455 0.00 0.00 0.00 4.55
5859 6589 9.656040 TTACAGTTATTACGGTGACATGTAAAT 57.344 29.630 0.00 0.00 34.52 1.40
5898 6628 6.358118 TGCAAGGACATTGTATTCGTTATC 57.642 37.500 1.33 0.00 41.29 1.75
5964 6698 9.854668 TTATTGCTTATGGTATGTAAAGGCTAA 57.145 29.630 0.00 0.00 0.00 3.09
6096 6830 4.880696 AGATCCTGCTTGCAAGACTATTTC 59.119 41.667 30.39 16.84 0.00 2.17
6101 6835 5.125100 TGCTTGCAAGACTATTTCCTTTG 57.875 39.130 30.39 0.00 0.00 2.77
6240 7056 4.137543 ACCCATCAGAAGAAGAAACACAC 58.862 43.478 0.00 0.00 0.00 3.82
6241 7057 4.141390 ACCCATCAGAAGAAGAAACACACT 60.141 41.667 0.00 0.00 0.00 3.55
6248 7066 8.197988 TCAGAAGAAGAAACACACTCTTTTAC 57.802 34.615 0.00 0.00 33.24 2.01
6297 7523 2.312390 AGCCCCGTGTAAAATGTGTTT 58.688 42.857 0.00 0.00 0.00 2.83
6308 7534 6.483640 GTGTAAAATGTGTTTGGGGCAATTTA 59.516 34.615 0.00 0.00 0.00 1.40
6392 7644 9.153479 AGATACAATCAGATATAGAATAGCCCC 57.847 37.037 0.00 0.00 0.00 5.80
6429 7690 9.604626 CTAAATAAAAGGGATACTACGACTACG 57.395 37.037 0.00 0.00 45.75 3.51
6478 7742 4.171005 GTTGAACTGGTCATCATTGCATG 58.829 43.478 0.00 0.00 35.70 4.06
6499 7763 2.434134 CGTAGCTCACGCGGACAAC 61.434 63.158 12.47 0.00 45.03 3.32
6505 7769 3.403057 CACGCGGACAACGGACAG 61.403 66.667 12.47 0.00 44.51 3.51
6510 7774 1.374125 CGGACAACGGACAGCATCA 60.374 57.895 0.00 0.00 39.42 3.07
6516 7780 2.290641 ACAACGGACAGCATCAAGAAAC 59.709 45.455 0.00 0.00 0.00 2.78
6517 7781 2.254546 ACGGACAGCATCAAGAAACA 57.745 45.000 0.00 0.00 0.00 2.83
6519 7783 2.549754 ACGGACAGCATCAAGAAACAAG 59.450 45.455 0.00 0.00 0.00 3.16
6522 7786 1.615392 ACAGCATCAAGAAACAAGCCC 59.385 47.619 0.00 0.00 0.00 5.19
6529 7793 2.958355 TCAAGAAACAAGCCCTTGAAGG 59.042 45.455 14.46 3.69 42.05 3.46
6530 7794 2.695147 CAAGAAACAAGCCCTTGAAGGT 59.305 45.455 10.82 0.00 42.93 3.50
6531 7795 3.876309 AGAAACAAGCCCTTGAAGGTA 57.124 42.857 10.82 0.00 42.93 3.08
6532 7796 3.756117 AGAAACAAGCCCTTGAAGGTAG 58.244 45.455 10.82 0.00 42.93 3.18
6533 7797 3.394606 AGAAACAAGCCCTTGAAGGTAGA 59.605 43.478 10.82 0.00 42.93 2.59
6534 7798 3.425162 AACAAGCCCTTGAAGGTAGAG 57.575 47.619 10.82 0.15 42.93 2.43
6535 7799 1.630878 ACAAGCCCTTGAAGGTAGAGG 59.369 52.381 10.82 0.00 42.93 3.69
6536 7800 1.909302 CAAGCCCTTGAAGGTAGAGGA 59.091 52.381 10.82 0.00 42.93 3.71
6537 7801 1.872773 AGCCCTTGAAGGTAGAGGAG 58.127 55.000 10.82 0.00 31.93 3.69
6538 7802 0.179234 GCCCTTGAAGGTAGAGGAGC 59.821 60.000 10.82 0.36 31.93 4.70
6539 7803 1.573108 CCCTTGAAGGTAGAGGAGCA 58.427 55.000 10.82 0.00 31.93 4.26
6540 7804 1.208293 CCCTTGAAGGTAGAGGAGCAC 59.792 57.143 10.82 0.00 31.93 4.40
6541 7805 1.902508 CCTTGAAGGTAGAGGAGCACA 59.097 52.381 2.25 0.00 32.11 4.57
6542 7806 2.503356 CCTTGAAGGTAGAGGAGCACAT 59.497 50.000 2.25 0.00 32.11 3.21
6543 7807 3.431486 CCTTGAAGGTAGAGGAGCACATC 60.431 52.174 2.25 0.00 32.11 3.06
6544 7808 3.107402 TGAAGGTAGAGGAGCACATCT 57.893 47.619 3.36 3.36 40.35 2.90
6545 7809 3.445008 TGAAGGTAGAGGAGCACATCTT 58.555 45.455 3.12 0.00 38.20 2.40
6546 7810 3.840666 TGAAGGTAGAGGAGCACATCTTT 59.159 43.478 3.12 0.00 38.20 2.52
6547 7811 4.287067 TGAAGGTAGAGGAGCACATCTTTT 59.713 41.667 3.12 0.00 38.20 2.27
6548 7812 4.917906 AGGTAGAGGAGCACATCTTTTT 57.082 40.909 3.12 0.00 38.20 1.94
6549 7813 4.583871 AGGTAGAGGAGCACATCTTTTTG 58.416 43.478 3.12 0.00 38.20 2.44
6550 7814 4.287067 AGGTAGAGGAGCACATCTTTTTGA 59.713 41.667 3.12 0.00 38.20 2.69
6551 7815 5.003804 GGTAGAGGAGCACATCTTTTTGAA 58.996 41.667 3.12 0.00 38.20 2.69
6552 7816 5.649831 GGTAGAGGAGCACATCTTTTTGAAT 59.350 40.000 3.12 0.00 38.20 2.57
6553 7817 5.893897 AGAGGAGCACATCTTTTTGAATC 57.106 39.130 0.00 0.00 33.14 2.52
6554 7818 4.394300 AGAGGAGCACATCTTTTTGAATCG 59.606 41.667 0.00 0.00 33.14 3.34
6555 7819 3.119708 AGGAGCACATCTTTTTGAATCGC 60.120 43.478 0.00 0.00 0.00 4.58
6556 7820 3.119708 GGAGCACATCTTTTTGAATCGCT 60.120 43.478 0.00 0.00 0.00 4.93
6557 7821 3.829948 AGCACATCTTTTTGAATCGCTG 58.170 40.909 0.00 0.00 0.00 5.18
6558 7822 2.343544 GCACATCTTTTTGAATCGCTGC 59.656 45.455 0.00 0.00 0.00 5.25
6559 7823 3.567530 CACATCTTTTTGAATCGCTGCA 58.432 40.909 0.00 0.00 0.00 4.41
6560 7824 3.982701 CACATCTTTTTGAATCGCTGCAA 59.017 39.130 0.00 0.00 0.00 4.08
6561 7825 4.445052 CACATCTTTTTGAATCGCTGCAAA 59.555 37.500 0.00 0.00 32.63 3.68
6562 7826 5.119588 CACATCTTTTTGAATCGCTGCAAAT 59.880 36.000 0.00 0.00 34.36 2.32
6563 7827 6.308524 CACATCTTTTTGAATCGCTGCAAATA 59.691 34.615 0.00 0.00 34.36 1.40
6564 7828 6.529125 ACATCTTTTTGAATCGCTGCAAATAG 59.471 34.615 0.00 4.35 35.65 1.73
6565 7829 6.012658 TCTTTTTGAATCGCTGCAAATAGT 57.987 33.333 9.18 0.00 35.75 2.12
6566 7830 7.139896 TCTTTTTGAATCGCTGCAAATAGTA 57.860 32.000 9.18 0.00 35.75 1.82
6567 7831 7.761409 TCTTTTTGAATCGCTGCAAATAGTAT 58.239 30.769 9.18 0.00 35.75 2.12
6568 7832 7.697710 TCTTTTTGAATCGCTGCAAATAGTATG 59.302 33.333 9.18 0.00 35.75 2.39
6569 7833 4.472691 TGAATCGCTGCAAATAGTATGC 57.527 40.909 0.00 0.00 44.08 3.14
6570 7834 3.250762 TGAATCGCTGCAAATAGTATGCC 59.749 43.478 0.00 0.00 43.16 4.40
6571 7835 2.323968 TCGCTGCAAATAGTATGCCA 57.676 45.000 0.00 0.00 43.16 4.92
6572 7836 2.849942 TCGCTGCAAATAGTATGCCAT 58.150 42.857 0.00 0.00 43.16 4.40
6573 7837 2.807967 TCGCTGCAAATAGTATGCCATC 59.192 45.455 0.00 0.00 43.16 3.51
6574 7838 2.411935 CGCTGCAAATAGTATGCCATCG 60.412 50.000 0.00 0.00 43.16 3.84
6575 7839 2.549754 GCTGCAAATAGTATGCCATCGT 59.450 45.455 0.00 0.00 43.16 3.73
6576 7840 3.607775 GCTGCAAATAGTATGCCATCGTG 60.608 47.826 0.00 0.00 43.16 4.35
6577 7841 3.540617 TGCAAATAGTATGCCATCGTGT 58.459 40.909 0.00 0.00 43.16 4.49
6578 7842 4.698575 TGCAAATAGTATGCCATCGTGTA 58.301 39.130 0.00 0.00 43.16 2.90
6579 7843 4.509970 TGCAAATAGTATGCCATCGTGTAC 59.490 41.667 0.00 0.00 43.16 2.90
6580 7844 4.376008 GCAAATAGTATGCCATCGTGTACG 60.376 45.833 0.00 0.00 37.85 3.67
6581 7845 3.570926 ATAGTATGCCATCGTGTACGG 57.429 47.619 4.44 0.00 40.29 4.02
6582 7846 0.249322 AGTATGCCATCGTGTACGGC 60.249 55.000 4.44 2.07 46.43 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.870411 CCGAATCGGTTGAAGATAACCC 59.130 50.000 14.46 0.00 45.84 4.11
1 2 4.211374 CATCCGAATCGGTTGAAGATAACC 59.789 45.833 23.97 0.00 46.01 2.85
2 3 4.211374 CCATCCGAATCGGTTGAAGATAAC 59.789 45.833 28.33 0.00 46.01 1.89
3 4 4.377021 CCATCCGAATCGGTTGAAGATAA 58.623 43.478 28.33 5.42 46.01 1.75
4 5 3.802329 GCCATCCGAATCGGTTGAAGATA 60.802 47.826 28.33 6.14 46.01 1.98
5 6 2.838736 CCATCCGAATCGGTTGAAGAT 58.161 47.619 28.33 9.59 46.01 2.40
6 7 1.742411 GCCATCCGAATCGGTTGAAGA 60.742 52.381 28.33 7.60 46.01 2.87
7 8 0.657840 GCCATCCGAATCGGTTGAAG 59.342 55.000 28.33 16.45 46.01 3.02
8 9 1.087202 CGCCATCCGAATCGGTTGAA 61.087 55.000 28.33 8.70 46.01 2.69
9 10 1.520564 CGCCATCCGAATCGGTTGA 60.521 57.895 28.33 9.07 46.01 3.18
14 15 3.398134 CGAGCGCCATCCGAATCG 61.398 66.667 2.29 0.00 39.85 3.34
15 16 3.706668 GCGAGCGCCATCCGAATC 61.707 66.667 2.29 0.00 40.02 2.52
16 17 2.434658 TATGCGAGCGCCATCCGAAT 62.435 55.000 12.70 5.77 41.09 3.34
17 18 2.636778 TTATGCGAGCGCCATCCGAA 62.637 55.000 12.70 0.00 41.09 4.30
18 19 3.145422 TTATGCGAGCGCCATCCGA 62.145 57.895 12.70 0.00 41.09 4.55
19 20 2.661537 TTATGCGAGCGCCATCCG 60.662 61.111 12.70 4.03 41.09 4.18
20 21 1.835483 CTGTTATGCGAGCGCCATCC 61.835 60.000 12.70 0.00 41.09 3.51
21 22 1.566563 CTGTTATGCGAGCGCCATC 59.433 57.895 12.70 0.00 41.09 3.51
22 23 1.889105 CCTGTTATGCGAGCGCCAT 60.889 57.895 12.70 2.83 41.09 4.40
23 24 2.310327 ATCCTGTTATGCGAGCGCCA 62.310 55.000 12.70 0.00 41.09 5.69
24 25 0.319555 TATCCTGTTATGCGAGCGCC 60.320 55.000 12.70 0.00 41.09 6.53
25 26 1.063806 CTATCCTGTTATGCGAGCGC 58.936 55.000 8.08 8.08 42.35 5.92
26 27 2.706555 TCTATCCTGTTATGCGAGCG 57.293 50.000 0.00 0.00 0.00 5.03
27 28 3.983741 ACTTCTATCCTGTTATGCGAGC 58.016 45.455 0.00 0.00 0.00 5.03
28 29 5.446143 AGACTTCTATCCTGTTATGCGAG 57.554 43.478 0.00 0.00 0.00 5.03
29 30 6.296803 TCTAGACTTCTATCCTGTTATGCGA 58.703 40.000 0.00 0.00 0.00 5.10
30 31 6.428465 TCTCTAGACTTCTATCCTGTTATGCG 59.572 42.308 0.00 0.00 0.00 4.73
31 32 7.574967 GCTCTCTAGACTTCTATCCTGTTATGC 60.575 44.444 0.00 0.00 0.00 3.14
32 33 7.665559 AGCTCTCTAGACTTCTATCCTGTTATG 59.334 40.741 0.00 0.00 0.00 1.90
33 34 7.755618 AGCTCTCTAGACTTCTATCCTGTTAT 58.244 38.462 0.00 0.00 0.00 1.89
34 35 7.144234 AGCTCTCTAGACTTCTATCCTGTTA 57.856 40.000 0.00 0.00 0.00 2.41
35 36 6.013554 AGCTCTCTAGACTTCTATCCTGTT 57.986 41.667 0.00 0.00 0.00 3.16
36 37 5.646692 AGCTCTCTAGACTTCTATCCTGT 57.353 43.478 0.00 0.00 0.00 4.00
37 38 7.336931 GGATAAGCTCTCTAGACTTCTATCCTG 59.663 44.444 12.22 0.00 30.71 3.86
38 39 7.239773 AGGATAAGCTCTCTAGACTTCTATCCT 59.760 40.741 14.55 14.55 35.48 3.24
39 40 7.402862 AGGATAAGCTCTCTAGACTTCTATCC 58.597 42.308 11.84 11.84 32.33 2.59
40 41 8.863872 AAGGATAAGCTCTCTAGACTTCTATC 57.136 38.462 0.00 0.00 0.00 2.08
41 42 8.669571 AGAAGGATAAGCTCTCTAGACTTCTAT 58.330 37.037 12.34 0.00 39.99 1.98
42 43 8.041143 AGAAGGATAAGCTCTCTAGACTTCTA 57.959 38.462 12.34 0.00 39.99 2.10
43 44 6.911308 AGAAGGATAAGCTCTCTAGACTTCT 58.089 40.000 9.49 9.49 37.79 2.85
44 45 7.582667 AAGAAGGATAAGCTCTCTAGACTTC 57.417 40.000 6.05 6.05 33.81 3.01
45 46 9.654919 AATAAGAAGGATAAGCTCTCTAGACTT 57.345 33.333 0.00 0.00 0.00 3.01
48 49 9.523168 GGTAATAAGAAGGATAAGCTCTCTAGA 57.477 37.037 0.00 0.00 0.00 2.43
49 50 8.455682 CGGTAATAAGAAGGATAAGCTCTCTAG 58.544 40.741 0.00 0.00 0.00 2.43
50 51 7.943447 ACGGTAATAAGAAGGATAAGCTCTCTA 59.057 37.037 0.00 0.00 0.00 2.43
51 52 6.778559 ACGGTAATAAGAAGGATAAGCTCTCT 59.221 38.462 0.00 0.00 0.00 3.10
52 53 6.983984 ACGGTAATAAGAAGGATAAGCTCTC 58.016 40.000 0.00 0.00 0.00 3.20
53 54 6.980416 ACGGTAATAAGAAGGATAAGCTCT 57.020 37.500 0.00 0.00 0.00 4.09
54 55 7.697291 CGATACGGTAATAAGAAGGATAAGCTC 59.303 40.741 0.00 0.00 0.00 4.09
55 56 7.362747 CCGATACGGTAATAAGAAGGATAAGCT 60.363 40.741 1.80 0.00 42.73 3.74
56 57 6.750963 CCGATACGGTAATAAGAAGGATAAGC 59.249 42.308 1.80 0.00 42.73 3.09
74 75 1.393539 CTGACAAAGGCAACCGATACG 59.606 52.381 0.00 0.00 37.17 3.06
75 76 1.130561 GCTGACAAAGGCAACCGATAC 59.869 52.381 0.00 0.00 37.17 2.24
76 77 1.271108 TGCTGACAAAGGCAACCGATA 60.271 47.619 0.00 0.00 35.40 2.92
77 78 0.537143 TGCTGACAAAGGCAACCGAT 60.537 50.000 0.00 0.00 35.40 4.18
78 79 0.537143 ATGCTGACAAAGGCAACCGA 60.537 50.000 0.00 0.00 41.90 4.69
79 80 0.387622 CATGCTGACAAAGGCAACCG 60.388 55.000 0.00 0.00 41.90 4.44
80 81 0.675633 ACATGCTGACAAAGGCAACC 59.324 50.000 0.00 0.00 41.90 3.77
81 82 3.641437 TTACATGCTGACAAAGGCAAC 57.359 42.857 0.00 0.00 41.90 4.17
82 83 4.870123 AATTACATGCTGACAAAGGCAA 57.130 36.364 0.00 0.00 41.90 4.52
83 84 5.067674 GGATAATTACATGCTGACAAAGGCA 59.932 40.000 0.00 0.00 42.80 4.75
84 85 5.300286 AGGATAATTACATGCTGACAAAGGC 59.700 40.000 0.00 0.00 0.00 4.35
85 86 6.949352 AGGATAATTACATGCTGACAAAGG 57.051 37.500 0.00 0.00 0.00 3.11
86 87 9.643693 AAAAAGGATAATTACATGCTGACAAAG 57.356 29.630 0.00 0.00 0.00 2.77
109 110 6.721321 CAAACGGAGTAGAGCAAAGTAAAAA 58.279 36.000 0.00 0.00 45.00 1.94
110 111 5.277634 GCAAACGGAGTAGAGCAAAGTAAAA 60.278 40.000 0.00 0.00 45.00 1.52
111 112 4.212636 GCAAACGGAGTAGAGCAAAGTAAA 59.787 41.667 0.00 0.00 45.00 2.01
112 113 3.744426 GCAAACGGAGTAGAGCAAAGTAA 59.256 43.478 0.00 0.00 45.00 2.24
113 114 3.323243 GCAAACGGAGTAGAGCAAAGTA 58.677 45.455 0.00 0.00 45.00 2.24
114 115 2.143925 GCAAACGGAGTAGAGCAAAGT 58.856 47.619 0.00 0.00 45.00 2.66
115 116 1.126846 CGCAAACGGAGTAGAGCAAAG 59.873 52.381 0.00 0.00 45.00 2.77
116 117 1.144969 CGCAAACGGAGTAGAGCAAA 58.855 50.000 0.00 0.00 45.00 3.68
117 118 2.822306 CGCAAACGGAGTAGAGCAA 58.178 52.632 0.00 0.00 45.00 3.91
118 119 4.571250 CGCAAACGGAGTAGAGCA 57.429 55.556 0.00 0.00 45.00 4.26
128 129 0.949105 AGTCTTACAGCCCGCAAACG 60.949 55.000 0.00 0.00 39.67 3.60
129 130 1.235724 AAGTCTTACAGCCCGCAAAC 58.764 50.000 0.00 0.00 0.00 2.93
130 131 1.975660 AAAGTCTTACAGCCCGCAAA 58.024 45.000 0.00 0.00 0.00 3.68
131 132 1.975660 AAAAGTCTTACAGCCCGCAA 58.024 45.000 0.00 0.00 0.00 4.85
132 133 2.843401 TAAAAGTCTTACAGCCCGCA 57.157 45.000 0.00 0.00 0.00 5.69
133 134 4.260091 CGTTATAAAAGTCTTACAGCCCGC 60.260 45.833 0.00 0.00 0.00 6.13
134 135 5.104374 TCGTTATAAAAGTCTTACAGCCCG 58.896 41.667 0.00 0.00 0.00 6.13
135 136 7.924947 AGTATCGTTATAAAAGTCTTACAGCCC 59.075 37.037 0.00 0.00 0.00 5.19
136 137 8.868635 AGTATCGTTATAAAAGTCTTACAGCC 57.131 34.615 0.00 0.00 0.00 4.85
165 166 9.748708 GTATGCAGCCATCTTATTAAAAATTCA 57.251 29.630 0.00 0.00 32.85 2.57
166 167 9.748708 TGTATGCAGCCATCTTATTAAAAATTC 57.251 29.630 0.00 0.00 32.85 2.17
168 169 9.918630 GATGTATGCAGCCATCTTATTAAAAAT 57.081 29.630 16.99 0.00 35.63 1.82
169 170 8.911965 TGATGTATGCAGCCATCTTATTAAAAA 58.088 29.630 22.00 3.70 38.59 1.94
170 171 8.462589 TGATGTATGCAGCCATCTTATTAAAA 57.537 30.769 22.00 4.24 38.59 1.52
171 172 8.640063 ATGATGTATGCAGCCATCTTATTAAA 57.360 30.769 22.00 7.14 38.59 1.52
172 173 7.884354 TGATGATGTATGCAGCCATCTTATTAA 59.116 33.333 22.00 7.67 38.40 1.40
173 174 7.396418 TGATGATGTATGCAGCCATCTTATTA 58.604 34.615 22.00 8.21 38.40 0.98
174 175 6.243148 TGATGATGTATGCAGCCATCTTATT 58.757 36.000 22.00 9.90 38.40 1.40
175 176 5.812286 TGATGATGTATGCAGCCATCTTAT 58.188 37.500 22.00 12.59 38.40 1.73
176 177 5.231702 TGATGATGTATGCAGCCATCTTA 57.768 39.130 22.00 9.30 38.40 2.10
177 178 4.094830 TGATGATGTATGCAGCCATCTT 57.905 40.909 22.00 17.77 38.40 2.40
178 179 3.782656 TGATGATGTATGCAGCCATCT 57.217 42.857 22.00 12.13 38.40 2.90
179 180 4.007659 TCATGATGATGTATGCAGCCATC 58.992 43.478 17.28 17.28 38.24 3.51
180 181 4.028993 TCATGATGATGTATGCAGCCAT 57.971 40.909 0.00 0.79 35.44 4.40
181 182 3.495434 TCATGATGATGTATGCAGCCA 57.505 42.857 0.00 0.00 0.00 4.75
182 183 4.357018 CATCATGATGATGTATGCAGCC 57.643 45.455 28.37 0.00 46.80 4.85
192 193 2.631545 TCGGTCTCTGCATCATGATGAT 59.368 45.455 34.65 1.25 41.20 2.45
193 194 2.034124 TCGGTCTCTGCATCATGATGA 58.966 47.619 34.65 19.93 41.20 2.92
194 195 2.405172 CTCGGTCTCTGCATCATGATG 58.595 52.381 28.04 28.04 41.60 3.07
195 196 1.343789 CCTCGGTCTCTGCATCATGAT 59.656 52.381 1.18 1.18 0.00 2.45
196 197 0.749049 CCTCGGTCTCTGCATCATGA 59.251 55.000 0.00 0.00 0.00 3.07
197 198 0.249784 CCCTCGGTCTCTGCATCATG 60.250 60.000 0.00 0.00 0.00 3.07
198 199 2.037620 GCCCTCGGTCTCTGCATCAT 62.038 60.000 0.00 0.00 0.00 2.45
199 200 2.725312 GCCCTCGGTCTCTGCATCA 61.725 63.158 0.00 0.00 0.00 3.07
200 201 2.037620 ATGCCCTCGGTCTCTGCATC 62.038 60.000 0.00 0.00 38.17 3.91
201 202 0.760567 TATGCCCTCGGTCTCTGCAT 60.761 55.000 0.00 0.00 44.28 3.96
202 203 1.381191 TATGCCCTCGGTCTCTGCA 60.381 57.895 0.00 0.00 36.23 4.41
203 204 1.068250 GTATGCCCTCGGTCTCTGC 59.932 63.158 0.00 0.00 0.00 4.26
204 205 0.757188 AGGTATGCCCTCGGTCTCTG 60.757 60.000 0.00 0.00 40.71 3.35
205 206 0.032017 AAGGTATGCCCTCGGTCTCT 60.032 55.000 0.00 0.00 45.47 3.10
206 207 0.389757 GAAGGTATGCCCTCGGTCTC 59.610 60.000 0.00 0.00 45.47 3.36
207 208 0.325296 TGAAGGTATGCCCTCGGTCT 60.325 55.000 0.00 0.00 45.47 3.85
208 209 0.759346 ATGAAGGTATGCCCTCGGTC 59.241 55.000 0.00 0.00 45.47 4.79
209 210 1.213296 AATGAAGGTATGCCCTCGGT 58.787 50.000 0.00 0.00 45.47 4.69
210 211 2.348411 AAATGAAGGTATGCCCTCGG 57.652 50.000 0.00 0.00 45.47 4.63
211 212 3.278574 TGAAAATGAAGGTATGCCCTCG 58.721 45.455 0.00 0.00 45.47 4.63
212 213 5.659440 TTTGAAAATGAAGGTATGCCCTC 57.341 39.130 0.00 0.00 45.47 4.30
301 302 8.076178 CGTCTTGAGTTTATTTGAGATTTTGGT 58.924 33.333 0.00 0.00 0.00 3.67
340 341 5.957910 AACGCGTTCAAATTTTCATTTCA 57.042 30.435 20.79 0.00 29.41 2.69
512 521 4.616835 GCTGCATCAGAAAACGGAGAAATT 60.617 41.667 0.00 0.00 32.44 1.82
513 522 3.119708 GCTGCATCAGAAAACGGAGAAAT 60.120 43.478 0.00 0.00 32.44 2.17
522 531 2.495155 TGCTAGGCTGCATCAGAAAA 57.505 45.000 0.50 0.00 38.12 2.29
545 554 1.174712 GGGCAAGCAGAACAGAGCAA 61.175 55.000 0.00 0.00 0.00 3.91
573 582 0.038159 GTTGTCAGGTCAGGACTCGG 60.038 60.000 0.00 0.00 36.26 4.63
574 583 0.038159 GGTTGTCAGGTCAGGACTCG 60.038 60.000 0.00 0.00 36.26 4.18
575 584 1.273886 GAGGTTGTCAGGTCAGGACTC 59.726 57.143 0.00 0.00 36.26 3.36
576 585 1.133009 AGAGGTTGTCAGGTCAGGACT 60.133 52.381 0.00 0.00 36.26 3.85
577 586 1.001406 CAGAGGTTGTCAGGTCAGGAC 59.999 57.143 0.00 0.00 35.83 3.85
578 587 1.342074 CAGAGGTTGTCAGGTCAGGA 58.658 55.000 0.00 0.00 0.00 3.86
627 639 0.739112 GCTTCTTGAGCCCACTCTCG 60.739 60.000 0.00 0.00 46.01 4.04
882 894 1.939974 TTCCGAATCAGAATGCCTCG 58.060 50.000 0.00 0.00 38.89 4.63
885 897 2.603173 GCGATTTCCGAATCAGAATGCC 60.603 50.000 0.00 0.00 41.43 4.40
897 909 1.009829 CCAGGAAGAAGCGATTTCCG 58.990 55.000 9.50 6.04 45.95 4.30
956 968 3.403038 ACGGAAGAATCCAACAGAAGTG 58.597 45.455 0.00 0.00 46.97 3.16
957 969 3.771577 ACGGAAGAATCCAACAGAAGT 57.228 42.857 0.00 0.00 46.97 3.01
976 989 3.776659 GAGAGGCCGCCGCTCTAAC 62.777 68.421 29.90 9.53 44.99 2.34
1221 1234 1.221566 CACGATCATGACCAGCCCA 59.778 57.895 0.00 0.00 0.00 5.36
1465 1483 1.132262 ACACAAGCAAACGAACACCAG 59.868 47.619 0.00 0.00 0.00 4.00
1474 1492 1.946768 TCAGCCTGTACACAAGCAAAC 59.053 47.619 5.79 0.00 35.83 2.93
1482 1503 4.116238 GCTAGAAGATTCAGCCTGTACAC 58.884 47.826 0.00 0.00 0.00 2.90
1502 1523 4.770010 TCCAAATAAGATTCCAAAACCGCT 59.230 37.500 0.00 0.00 0.00 5.52
1524 1545 4.650131 AGCTACCCAATGGAGTACTAAGTC 59.350 45.833 0.00 0.00 34.81 3.01
1525 1546 4.621769 AGCTACCCAATGGAGTACTAAGT 58.378 43.478 0.00 0.00 34.81 2.24
1566 1590 7.109501 TGCTAAAAGCTATACTGATGGTTTCA 58.890 34.615 0.03 0.00 42.97 2.69
1647 1707 6.696583 CACATCAGAACTCATAAGCTACTCTG 59.303 42.308 0.00 0.00 0.00 3.35
3119 3499 3.366396 TCAGGTAGACATGAACTCCCTC 58.634 50.000 0.00 0.00 33.38 4.30
3128 3508 5.065218 GCAACAAGGTATTCAGGTAGACATG 59.935 44.000 0.00 0.00 0.00 3.21
3135 3515 3.560025 CCTCTGCAACAAGGTATTCAGGT 60.560 47.826 0.00 0.00 0.00 4.00
3220 3600 5.923204 ACATTGTGATGGAGATAAGAGACC 58.077 41.667 0.00 0.00 37.60 3.85
3257 3637 5.107798 GCTTAACACTCGAACTCTTCTTCAC 60.108 44.000 0.00 0.00 0.00 3.18
3289 3669 2.746279 TTTCTTTTGCCTCCTGGTGA 57.254 45.000 0.00 0.00 35.27 4.02
3299 3679 5.529014 TGAAGCACAAACTTTTCTTTTGC 57.471 34.783 0.00 0.00 37.45 3.68
3310 3690 2.159393 TGCTGTCAGTTGAAGCACAAAC 60.159 45.455 0.93 0.00 41.83 2.93
3472 3861 8.246180 GCTCAATTCAATGATTTGGTTCTCTTA 58.754 33.333 15.23 0.00 33.44 2.10
3474 3863 6.209986 TGCTCAATTCAATGATTTGGTTCTCT 59.790 34.615 15.23 0.00 33.44 3.10
3498 3887 5.738909 TCCCTCTATCAGAAGAAGCTTTTG 58.261 41.667 0.00 0.00 0.00 2.44
3500 3889 4.408596 CCTCCCTCTATCAGAAGAAGCTTT 59.591 45.833 0.00 0.00 0.00 3.51
3501 3890 3.966665 CCTCCCTCTATCAGAAGAAGCTT 59.033 47.826 0.00 0.00 0.00 3.74
3502 3891 3.052186 ACCTCCCTCTATCAGAAGAAGCT 60.052 47.826 0.00 0.00 0.00 3.74
3503 3892 3.069443 CACCTCCCTCTATCAGAAGAAGC 59.931 52.174 0.00 0.00 0.00 3.86
3504 3893 3.640967 CCACCTCCCTCTATCAGAAGAAG 59.359 52.174 0.00 0.00 0.00 2.85
3505 3894 3.272285 TCCACCTCCCTCTATCAGAAGAA 59.728 47.826 0.00 0.00 0.00 2.52
3586 3975 9.065871 GCATTTCAGTTAGTACATCAACATTTC 57.934 33.333 0.00 0.00 0.00 2.17
3587 3976 8.575589 TGCATTTCAGTTAGTACATCAACATTT 58.424 29.630 0.00 0.00 0.00 2.32
3588 3977 8.109705 TGCATTTCAGTTAGTACATCAACATT 57.890 30.769 0.00 0.00 0.00 2.71
3589 3978 7.686438 TGCATTTCAGTTAGTACATCAACAT 57.314 32.000 0.00 0.00 0.00 2.71
3590 3979 7.132694 CTGCATTTCAGTTAGTACATCAACA 57.867 36.000 0.00 0.00 38.02 3.33
4383 5066 8.571461 AGGATTATCTCGTACCGTTATAATGA 57.429 34.615 6.24 0.00 31.38 2.57
4467 5155 1.826720 CCAGGGCATGCAACTTTACAT 59.173 47.619 21.36 0.00 0.00 2.29
4504 5192 4.621068 ACCATTAACAACGAGATGCATG 57.379 40.909 2.46 0.00 0.00 4.06
4822 5516 1.064060 GGAATGCCGAGGTTTGAATCG 59.936 52.381 0.00 0.00 38.65 3.34
4925 5619 1.679139 CCATCCAGATTAAGCCGCAA 58.321 50.000 0.00 0.00 0.00 4.85
4937 5631 2.025510 AGGAAAAGAGAAGCCCATCCAG 60.026 50.000 0.00 0.00 0.00 3.86
5142 5836 9.530129 GACGTATGATGAAAAACTTGAAAGTAG 57.470 33.333 0.00 0.00 38.57 2.57
5200 5895 0.371645 GAGGCAGAAATGAAGACGCG 59.628 55.000 3.53 3.53 0.00 6.01
5311 6014 7.298122 GTCACATAATAAAGCCATAATCCACG 58.702 38.462 0.00 0.00 0.00 4.94
5430 6139 2.232452 GTGTGGATCCCTGAGATATCGG 59.768 54.545 9.90 0.00 34.42 4.18
5448 6157 2.226437 CCACTTTTTCGCTATGCTGTGT 59.774 45.455 0.00 0.00 0.00 3.72
5556 6265 2.276732 TGGAGGAGGCACTTTTCTTG 57.723 50.000 0.00 0.00 41.55 3.02
5612 6322 6.321945 CACCATTCATATCAATTCACCCTTCA 59.678 38.462 0.00 0.00 0.00 3.02
5617 6327 6.469782 AACCACCATTCATATCAATTCACC 57.530 37.500 0.00 0.00 0.00 4.02
5681 6391 1.153958 GCAAAGCCGATCCACAAGC 60.154 57.895 0.00 0.00 0.00 4.01
5712 6422 0.037605 AATTGAGTCGACGGTGGTCC 60.038 55.000 10.46 0.00 40.17 4.46
5716 6426 3.924073 TCAATACAATTGAGTCGACGGTG 59.076 43.478 13.59 7.57 0.00 4.94
5734 6444 4.679373 AGATACAAGCATCCGACTCAAT 57.321 40.909 0.00 0.00 0.00 2.57
5780 6490 4.470334 ACATTGCACAAAAGAACCTTGT 57.530 36.364 0.00 0.00 37.49 3.16
5859 6589 2.462456 TGCAACAGCAAAAACAACCA 57.538 40.000 0.00 0.00 34.85 3.67
5948 6678 7.502226 CCATGAAAGATTAGCCTTTACATACCA 59.498 37.037 0.00 0.00 36.58 3.25
5964 6698 3.323751 GCCAAACTTGCCATGAAAGAT 57.676 42.857 13.22 1.20 0.00 2.40
6096 6830 8.807948 TTTGATAGTTATTTCCCTCTCAAAGG 57.192 34.615 0.00 0.00 45.77 3.11
6132 6866 6.501781 AGCTAATATTTGCTGCAGAAATGAC 58.498 36.000 21.22 0.00 37.84 3.06
6443 7707 1.202758 AGTTCAACCAAGTCATCGGCA 60.203 47.619 0.00 0.00 0.00 5.69
6449 7713 3.118075 TGATGACCAGTTCAACCAAGTCA 60.118 43.478 7.20 7.20 37.92 3.41
6499 7763 2.666619 GCTTGTTTCTTGATGCTGTCCG 60.667 50.000 0.00 0.00 0.00 4.79
6500 7764 2.352127 GGCTTGTTTCTTGATGCTGTCC 60.352 50.000 0.00 0.00 0.00 4.02
6505 7769 2.297033 TCAAGGGCTTGTTTCTTGATGC 59.703 45.455 0.00 0.00 41.04 3.91
6510 7774 3.032265 ACCTTCAAGGGCTTGTTTCTT 57.968 42.857 8.75 0.00 40.58 2.52
6516 7780 1.909302 TCCTCTACCTTCAAGGGCTTG 59.091 52.381 8.75 0.00 40.58 4.01
6517 7781 2.192263 CTCCTCTACCTTCAAGGGCTT 58.808 52.381 8.75 0.00 40.58 4.35
6519 7783 0.179234 GCTCCTCTACCTTCAAGGGC 59.821 60.000 8.75 0.00 40.58 5.19
6522 7786 3.450457 AGATGTGCTCCTCTACCTTCAAG 59.550 47.826 0.00 0.00 0.00 3.02
6529 7793 6.456181 CGATTCAAAAAGATGTGCTCCTCTAC 60.456 42.308 0.00 0.00 0.00 2.59
6530 7794 5.582269 CGATTCAAAAAGATGTGCTCCTCTA 59.418 40.000 0.00 0.00 0.00 2.43
6531 7795 4.394300 CGATTCAAAAAGATGTGCTCCTCT 59.606 41.667 0.00 0.00 0.00 3.69
6532 7796 4.656041 CGATTCAAAAAGATGTGCTCCTC 58.344 43.478 0.00 0.00 0.00 3.71
6533 7797 3.119708 GCGATTCAAAAAGATGTGCTCCT 60.120 43.478 0.00 0.00 0.00 3.69
6534 7798 3.119708 AGCGATTCAAAAAGATGTGCTCC 60.120 43.478 0.00 0.00 0.00 4.70
6535 7799 3.850273 CAGCGATTCAAAAAGATGTGCTC 59.150 43.478 0.00 0.00 0.00 4.26
6536 7800 3.829948 CAGCGATTCAAAAAGATGTGCT 58.170 40.909 0.00 0.00 0.00 4.40
6537 7801 2.343544 GCAGCGATTCAAAAAGATGTGC 59.656 45.455 0.00 0.00 0.00 4.57
6538 7802 3.567530 TGCAGCGATTCAAAAAGATGTG 58.432 40.909 0.00 0.00 0.00 3.21
6539 7803 3.921119 TGCAGCGATTCAAAAAGATGT 57.079 38.095 0.00 0.00 0.00 3.06
6540 7804 5.773239 ATTTGCAGCGATTCAAAAAGATG 57.227 34.783 2.04 0.00 36.02 2.90
6541 7805 6.624423 ACTATTTGCAGCGATTCAAAAAGAT 58.376 32.000 2.04 0.00 36.02 2.40
6542 7806 6.012658 ACTATTTGCAGCGATTCAAAAAGA 57.987 33.333 2.04 0.00 36.02 2.52
6543 7807 7.514125 GCATACTATTTGCAGCGATTCAAAAAG 60.514 37.037 2.04 0.00 39.90 2.27
6544 7808 6.253298 GCATACTATTTGCAGCGATTCAAAAA 59.747 34.615 2.04 0.00 39.90 1.94
6545 7809 5.743398 GCATACTATTTGCAGCGATTCAAAA 59.257 36.000 2.04 0.00 39.90 2.44
6546 7810 5.273170 GCATACTATTTGCAGCGATTCAAA 58.727 37.500 0.13 0.13 39.90 2.69
6547 7811 4.261155 GGCATACTATTTGCAGCGATTCAA 60.261 41.667 0.00 0.00 41.95 2.69
6548 7812 3.250762 GGCATACTATTTGCAGCGATTCA 59.749 43.478 0.00 0.00 41.95 2.57
6549 7813 3.250762 TGGCATACTATTTGCAGCGATTC 59.749 43.478 0.00 0.00 41.95 2.52
6550 7814 3.213506 TGGCATACTATTTGCAGCGATT 58.786 40.909 0.00 0.00 41.95 3.34
6551 7815 2.849942 TGGCATACTATTTGCAGCGAT 58.150 42.857 0.00 0.00 41.95 4.58
6552 7816 2.323968 TGGCATACTATTTGCAGCGA 57.676 45.000 0.00 0.00 41.95 4.93
6553 7817 2.411935 CGATGGCATACTATTTGCAGCG 60.412 50.000 0.00 0.00 41.95 5.18
6554 7818 2.549754 ACGATGGCATACTATTTGCAGC 59.450 45.455 0.00 0.00 41.95 5.25
6555 7819 3.561310 ACACGATGGCATACTATTTGCAG 59.439 43.478 0.00 0.00 41.95 4.41
6556 7820 3.540617 ACACGATGGCATACTATTTGCA 58.459 40.909 0.00 0.00 41.95 4.08
6557 7821 4.376008 CGTACACGATGGCATACTATTTGC 60.376 45.833 0.00 0.00 43.02 3.68
6558 7822 4.149922 CCGTACACGATGGCATACTATTTG 59.850 45.833 0.00 0.00 43.02 2.32
6559 7823 4.304110 CCGTACACGATGGCATACTATTT 58.696 43.478 0.00 0.00 43.02 1.40
6560 7824 3.909430 CCGTACACGATGGCATACTATT 58.091 45.455 0.00 0.00 43.02 1.73
6561 7825 3.570926 CCGTACACGATGGCATACTAT 57.429 47.619 0.00 0.00 43.02 2.12
6563 7827 3.959478 CCGTACACGATGGCATACT 57.041 52.632 0.00 0.00 43.02 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.