Multiple sequence alignment - TraesCS7A01G212100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G212100 chr7A 100.000 4314 0 0 1 4314 175244435 175240122 0.000000e+00 7967.0
1 TraesCS7A01G212100 chr7A 85.020 741 96 11 1785 2522 23904342 23903614 0.000000e+00 739.0
2 TraesCS7A01G212100 chr7A 84.636 742 99 11 1785 2523 24104004 24103275 0.000000e+00 725.0
3 TraesCS7A01G212100 chr7A 99.669 302 0 1 3608 3909 732466989 732467289 6.310000e-153 551.0
4 TraesCS7A01G212100 chr7A 97.674 301 6 1 3608 3908 516145882 516145583 2.300000e-142 516.0
5 TraesCS7A01G212100 chr7A 83.925 535 67 10 1785 2312 24298012 24297490 1.080000e-135 494.0
6 TraesCS7A01G212100 chr7A 96.026 302 10 2 3608 3908 503448774 503449074 1.390000e-134 490.0
7 TraesCS7A01G212100 chr7A 95.902 244 10 0 3927 4170 134573313 134573070 3.130000e-106 396.0
8 TraesCS7A01G212100 chr7A 85.465 344 44 6 2183 2523 23796094 23795754 1.910000e-93 353.0
9 TraesCS7A01G212100 chr7D 96.112 3627 82 22 1 3608 173020275 173023861 0.000000e+00 5862.0
10 TraesCS7A01G212100 chr7D 94.098 305 16 2 3608 3912 102552215 102552517 3.040000e-126 462.0
11 TraesCS7A01G212100 chr7D 93.056 72 1 3 4246 4314 173023984 173024054 7.630000e-18 102.0
12 TraesCS7A01G212100 chr7D 96.970 33 1 0 4227 4259 173023947 173023979 6.030000e-04 56.5
13 TraesCS7A01G212100 chr6D 87.312 733 76 5 852 1567 463648933 463649665 0.000000e+00 822.0
14 TraesCS7A01G212100 chr6D 84.451 328 35 7 240 553 463648514 463648839 4.190000e-80 309.0
15 TraesCS7A01G212100 chr6D 84.802 329 21 12 1781 2089 98138791 98139110 1.950000e-78 303.0
16 TraesCS7A01G212100 chr2A 82.399 767 88 20 1786 2537 363367736 363367002 3.660000e-175 625.0
17 TraesCS7A01G212100 chr2A 85.213 399 47 9 1801 2196 32946028 32946417 2.420000e-107 399.0
18 TraesCS7A01G212100 chr2A 83.392 283 42 5 2192 2470 32955053 32955334 1.540000e-64 257.0
19 TraesCS7A01G212100 chr7B 84.146 656 80 16 1898 2537 630359137 630358490 7.930000e-172 614.0
20 TraesCS7A01G212100 chr1A 83.010 671 81 24 1887 2537 512197296 512196639 1.040000e-160 577.0
21 TraesCS7A01G212100 chr1A 95.918 294 12 0 3608 3901 497195149 497195442 1.090000e-130 477.0
22 TraesCS7A01G212100 chr1A 95.582 249 11 0 3926 4174 345530371 345530123 2.420000e-107 399.0
23 TraesCS7A01G212100 chr3A 97.039 304 8 1 3608 3911 137605068 137605370 1.070000e-140 510.0
24 TraesCS7A01G212100 chr3A 96.309 298 8 2 3608 3904 566935906 566936201 1.800000e-133 486.0
25 TraesCS7A01G212100 chr3B 89.059 393 33 3 2152 2534 176785276 176785668 3.020000e-131 479.0
26 TraesCS7A01G212100 chr3B 91.916 334 19 4 1785 2117 176784952 176785278 1.090000e-125 460.0
27 TraesCS7A01G212100 chr3B 81.468 545 64 18 2004 2537 504963057 504963575 3.100000e-111 412.0
28 TraesCS7A01G212100 chr3B 92.164 268 17 1 3927 4194 670769519 670769256 4.070000e-100 375.0
29 TraesCS7A01G212100 chr3B 84.615 130 16 4 1777 1905 504962745 504962871 4.530000e-25 126.0
30 TraesCS7A01G212100 chr1B 94.156 308 17 1 3602 3909 161566946 161567252 6.530000e-128 468.0
31 TraesCS7A01G212100 chr1B 93.506 308 19 1 3602 3909 161537282 161537588 1.410000e-124 457.0
32 TraesCS7A01G212100 chr4A 95.131 267 9 1 3927 4193 483892893 483892631 6.670000e-113 418.0
33 TraesCS7A01G212100 chr4B 95.102 245 12 0 3926 4170 489655808 489655564 1.880000e-103 387.0
34 TraesCS7A01G212100 chr6A 93.208 265 12 2 3927 4189 38544658 38544918 6.770000e-103 385.0
35 TraesCS7A01G212100 chr6A 87.189 281 24 6 1053 1322 610291497 610291776 4.190000e-80 309.0
36 TraesCS7A01G212100 chr6A 85.632 174 18 3 852 1018 610291325 610291498 4.430000e-40 176.0
37 TraesCS7A01G212100 chr5B 92.884 267 15 1 3923 4189 524747558 524747296 6.770000e-103 385.0
38 TraesCS7A01G212100 chr5B 92.803 264 15 1 3926 4189 255500414 255500673 3.150000e-101 379.0
39 TraesCS7A01G212100 chr5A 92.336 274 15 2 3924 4195 555278793 555279062 6.770000e-103 385.0
40 TraesCS7A01G212100 chr5A 81.771 384 50 14 2064 2437 674370116 674369743 1.950000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G212100 chr7A 175240122 175244435 4313 True 7967.000000 7967 100.000000 1 4314 1 chr7A.!!$R6 4313
1 TraesCS7A01G212100 chr7A 23903614 23904342 728 True 739.000000 739 85.020000 1785 2522 1 chr7A.!!$R2 737
2 TraesCS7A01G212100 chr7A 24103275 24104004 729 True 725.000000 725 84.636000 1785 2523 1 chr7A.!!$R3 738
3 TraesCS7A01G212100 chr7A 24297490 24298012 522 True 494.000000 494 83.925000 1785 2312 1 chr7A.!!$R4 527
4 TraesCS7A01G212100 chr7D 173020275 173024054 3779 False 2006.833333 5862 95.379333 1 4314 3 chr7D.!!$F2 4313
5 TraesCS7A01G212100 chr6D 463648514 463649665 1151 False 565.500000 822 85.881500 240 1567 2 chr6D.!!$F2 1327
6 TraesCS7A01G212100 chr2A 363367002 363367736 734 True 625.000000 625 82.399000 1786 2537 1 chr2A.!!$R1 751
7 TraesCS7A01G212100 chr7B 630358490 630359137 647 True 614.000000 614 84.146000 1898 2537 1 chr7B.!!$R1 639
8 TraesCS7A01G212100 chr1A 512196639 512197296 657 True 577.000000 577 83.010000 1887 2537 1 chr1A.!!$R2 650
9 TraesCS7A01G212100 chr3B 176784952 176785668 716 False 469.500000 479 90.487500 1785 2534 2 chr3B.!!$F1 749
10 TraesCS7A01G212100 chr3B 504962745 504963575 830 False 269.000000 412 83.041500 1777 2537 2 chr3B.!!$F2 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 510 0.390340 CATATCCTGATCGCGGTGGG 60.390 60.0 6.13 3.6 0.00 4.61 F
1677 1743 0.681175 ATGCAAAAGCCTTGGGTGAC 59.319 50.0 0.00 0.0 0.00 3.67 F
2967 3208 0.690192 TGCAGGGTCGAATTCCTTGA 59.310 50.0 6.83 0.0 34.59 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2625 0.469705 TTGCCTGTGATTTGCCTGGT 60.470 50.0 0.00 0.0 0.0 4.00 R
3105 3346 0.318762 AGCCACTTCCTCGAACACTC 59.681 55.0 0.00 0.0 0.0 3.51 R
4278 4572 0.037232 AAAGAGTACGCTGAGCACCC 60.037 55.0 4.88 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 0.612229 TGCTTCTTCCTCTCTGCCAG 59.388 55.000 0.00 0.00 0.00 4.85
150 151 4.162320 TGAACCTCTCTCTCTCTCTCTCTC 59.838 50.000 0.00 0.00 0.00 3.20
151 152 4.000928 ACCTCTCTCTCTCTCTCTCTCT 57.999 50.000 0.00 0.00 0.00 3.10
152 153 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
153 154 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
154 155 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
155 156 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
163 164 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
345 357 3.451141 TTTGTGTTCCATTTCAGGTGC 57.549 42.857 0.00 0.00 0.00 5.01
368 383 4.322567 GAGGTGCCAGATATCTTGGAATC 58.677 47.826 19.48 12.52 0.00 2.52
384 399 2.541556 GAATCGGAGCTCAACACTACC 58.458 52.381 17.19 0.00 0.00 3.18
418 433 5.527214 TCTTCATGTGTCTTTTCATTGACGT 59.473 36.000 0.00 0.00 36.10 4.34
495 510 0.390340 CATATCCTGATCGCGGTGGG 60.390 60.000 6.13 3.60 0.00 4.61
496 511 1.544825 ATATCCTGATCGCGGTGGGG 61.545 60.000 6.13 3.17 0.00 4.96
553 568 6.128200 GCTATTGACTCACATCATGTTGTTGA 60.128 38.462 6.68 7.52 0.00 3.18
791 807 4.582701 TGACCCTTAACTTGTGCAATTG 57.417 40.909 0.00 0.00 0.00 2.32
792 808 3.320541 TGACCCTTAACTTGTGCAATTGG 59.679 43.478 7.72 0.00 0.00 3.16
794 810 2.632512 CCCTTAACTTGTGCAATTGGGT 59.367 45.455 7.72 0.00 0.00 4.51
795 811 3.829601 CCCTTAACTTGTGCAATTGGGTA 59.170 43.478 7.72 0.00 0.00 3.69
796 812 4.082245 CCCTTAACTTGTGCAATTGGGTAG 60.082 45.833 7.72 0.00 0.00 3.18
797 813 4.485163 CTTAACTTGTGCAATTGGGTAGC 58.515 43.478 7.72 0.00 0.00 3.58
798 814 2.292828 ACTTGTGCAATTGGGTAGCT 57.707 45.000 7.72 0.00 0.00 3.32
799 815 3.433306 ACTTGTGCAATTGGGTAGCTA 57.567 42.857 7.72 0.00 0.00 3.32
800 816 3.761897 ACTTGTGCAATTGGGTAGCTAA 58.238 40.909 7.72 0.00 0.00 3.09
964 1020 8.630054 TTGTTGCTTATTACTACCATGAGTTT 57.370 30.769 0.00 0.00 0.00 2.66
977 1033 5.772521 ACCATGAGTTTTGTCATTAACAGC 58.227 37.500 0.00 0.00 39.58 4.40
1003 1059 7.378966 GCTCTATATGTAAACTAGGTGCATGA 58.621 38.462 0.00 0.00 0.00 3.07
1033 1089 3.636679 TCATCTAGGGAGAAGTCTGTGG 58.363 50.000 0.00 0.00 34.61 4.17
1082 1138 2.985139 GCACAAGAAGAAATTCTGCAGC 59.015 45.455 9.47 0.00 0.00 5.25
1126 1182 2.353011 CGTCGCCCTAAACAGGAAGTTA 60.353 50.000 0.00 0.00 40.26 2.24
1170 1226 7.383687 AGTACAACGAGGACAATGATCTTTTA 58.616 34.615 0.00 0.00 0.00 1.52
1372 1438 5.099042 TGACCATAAAGACTAAAGGAGCC 57.901 43.478 0.00 0.00 0.00 4.70
1582 1648 2.119801 ATGCCTTGTGTGTGGAGATC 57.880 50.000 0.00 0.00 0.00 2.75
1677 1743 0.681175 ATGCAAAAGCCTTGGGTGAC 59.319 50.000 0.00 0.00 0.00 3.67
1697 1763 8.027771 GGGTGACGAGGTATGATAATTTACTAG 58.972 40.741 0.00 0.00 0.00 2.57
1705 1771 9.839185 AGGTATGATAATTTACTAGCCTCCTAA 57.161 33.333 0.00 0.00 0.00 2.69
1755 1821 1.966901 TTGTGGGGACTGCGCGATAT 61.967 55.000 12.10 0.00 0.00 1.63
2397 2625 6.821665 GTGTGTACTTTCCTTTGCTATATGGA 59.178 38.462 0.00 0.00 0.00 3.41
2626 2867 9.807921 TGTTCCTTAAGAAAGTGATTAAATCCT 57.192 29.630 3.36 0.00 35.85 3.24
2754 2995 6.602009 ACATGGTTTATAGCCACTAAGTTTCC 59.398 38.462 0.00 0.00 39.03 3.13
2756 2997 6.544650 TGGTTTATAGCCACTAAGTTTCCAA 58.455 36.000 0.00 0.00 0.00 3.53
2763 3004 4.649218 AGCCACTAAGTTTCCAACAACATT 59.351 37.500 0.00 0.00 0.00 2.71
2782 3023 6.130692 ACATTAGTATGGCATCATGATGGA 57.869 37.500 31.62 0.00 36.03 3.41
2906 3147 7.775053 AACATCTTAGGCCAATTTAAAGACA 57.225 32.000 5.01 0.00 0.00 3.41
2910 3151 3.542969 AGGCCAATTTAAAGACAGGGT 57.457 42.857 5.01 0.00 0.00 4.34
2931 3172 7.012421 CAGGGTTTTACCTACTATGAAAGCATC 59.988 40.741 0.00 0.00 39.34 3.91
2967 3208 0.690192 TGCAGGGTCGAATTCCTTGA 59.310 50.000 6.83 0.00 34.59 3.02
2968 3209 1.281867 TGCAGGGTCGAATTCCTTGAT 59.718 47.619 6.83 0.00 34.59 2.57
3105 3346 0.741915 GAGGAAGCTAGGGTGAGACG 59.258 60.000 0.00 0.00 0.00 4.18
3148 3389 5.426509 TGAGGATATCAAGAAGGAGAAAGCA 59.573 40.000 4.83 0.00 34.02 3.91
3184 3425 2.171448 GGCTATCAAGGAGGAGAAAGCA 59.829 50.000 0.00 0.00 0.00 3.91
3190 3431 0.248843 AGGAGGAGAAAGCAGCGAAG 59.751 55.000 0.00 0.00 0.00 3.79
3208 3449 2.926778 AGCTGGCTAAGGCTATCAAG 57.073 50.000 0.00 0.00 37.00 3.02
3209 3450 1.419387 AGCTGGCTAAGGCTATCAAGG 59.581 52.381 0.00 0.00 37.00 3.61
3210 3451 1.544314 GCTGGCTAAGGCTATCAAGGG 60.544 57.143 0.00 0.00 38.73 3.95
3298 3539 1.066605 AGCGCCAAGTATGTAGTACCG 59.933 52.381 2.29 0.00 33.58 4.02
3316 3557 2.028385 ACCGGCTAGACGAAAATGAGTT 60.028 45.455 22.46 0.00 35.47 3.01
3327 3568 6.016777 AGACGAAAATGAGTTGCTTCTCAATT 60.017 34.615 13.45 9.75 45.65 2.32
3345 3586 4.875536 TCAATTCATGGTTACTGTCGATGG 59.124 41.667 0.00 0.00 0.00 3.51
3353 3594 3.056749 GGTTACTGTCGATGGTGTCTCTT 60.057 47.826 0.00 0.00 0.00 2.85
3355 3596 3.305398 ACTGTCGATGGTGTCTCTTTC 57.695 47.619 0.00 0.00 0.00 2.62
3420 3673 0.670546 CACACCCCTTAGCAGACACG 60.671 60.000 0.00 0.00 0.00 4.49
3522 3775 6.992063 AATGTCTGGCTGAAACTAGTTATG 57.008 37.500 8.92 3.49 0.00 1.90
3523 3776 5.483685 TGTCTGGCTGAAACTAGTTATGT 57.516 39.130 8.92 0.00 0.00 2.29
3524 3777 6.599356 TGTCTGGCTGAAACTAGTTATGTA 57.401 37.500 8.92 0.00 0.00 2.29
3525 3778 6.395629 TGTCTGGCTGAAACTAGTTATGTAC 58.604 40.000 8.92 0.82 0.00 2.90
3533 3786 8.177663 GCTGAAACTAGTTATGTACGTACTACA 58.822 37.037 25.12 9.72 39.78 2.74
3563 3816 5.351465 TGAAATTCTTCTGCTATCGAACCAC 59.649 40.000 0.00 0.00 32.33 4.16
3565 3818 3.510388 TCTTCTGCTATCGAACCACAG 57.490 47.619 0.00 0.00 0.00 3.66
3566 3819 2.826128 TCTTCTGCTATCGAACCACAGT 59.174 45.455 0.00 0.00 0.00 3.55
3567 3820 2.941453 TCTGCTATCGAACCACAGTC 57.059 50.000 0.00 0.00 0.00 3.51
3569 3822 3.617284 TCTGCTATCGAACCACAGTCTA 58.383 45.455 0.00 0.00 0.00 2.59
3571 3824 3.353557 TGCTATCGAACCACAGTCTACT 58.646 45.455 0.00 0.00 0.00 2.57
3574 3827 4.815308 GCTATCGAACCACAGTCTACTCTA 59.185 45.833 0.00 0.00 0.00 2.43
3608 3862 1.530013 CTTGCCTTGGCCCAAGTCAG 61.530 60.000 21.65 10.48 39.58 3.51
3609 3863 2.677875 GCCTTGGCCCAAGTCAGG 60.678 66.667 21.65 8.78 39.58 3.86
3615 3869 3.334054 GCCCAAGTCAGGCCTCCT 61.334 66.667 0.00 0.00 45.16 3.69
3616 3870 2.911926 GCCCAAGTCAGGCCTCCTT 61.912 63.158 0.00 5.14 45.16 3.36
3617 3871 1.770324 CCCAAGTCAGGCCTCCTTT 59.230 57.895 0.00 0.00 0.00 3.11
3618 3872 0.610232 CCCAAGTCAGGCCTCCTTTG 60.610 60.000 0.00 7.50 0.00 2.77
3619 3873 0.610232 CCAAGTCAGGCCTCCTTTGG 60.610 60.000 19.07 19.07 34.15 3.28
3620 3874 0.111253 CAAGTCAGGCCTCCTTTGGT 59.889 55.000 0.00 0.00 0.00 3.67
3621 3875 0.853530 AAGTCAGGCCTCCTTTGGTT 59.146 50.000 0.00 0.00 0.00 3.67
3622 3876 0.402121 AGTCAGGCCTCCTTTGGTTC 59.598 55.000 0.00 0.00 0.00 3.62
3623 3877 0.110486 GTCAGGCCTCCTTTGGTTCA 59.890 55.000 0.00 0.00 0.00 3.18
3624 3878 1.075601 TCAGGCCTCCTTTGGTTCAT 58.924 50.000 0.00 0.00 0.00 2.57
3625 3879 2.026262 GTCAGGCCTCCTTTGGTTCATA 60.026 50.000 0.00 0.00 0.00 2.15
3626 3880 2.239654 TCAGGCCTCCTTTGGTTCATAG 59.760 50.000 0.00 0.00 0.00 2.23
3627 3881 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
3628 3882 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
3629 3883 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
3630 3884 3.394606 GGCCTCCTTTGGTTCATAGGATA 59.605 47.826 0.00 0.00 39.94 2.59
3631 3885 4.505742 GGCCTCCTTTGGTTCATAGGATAG 60.506 50.000 0.00 4.66 39.94 2.08
3632 3886 4.505742 GCCTCCTTTGGTTCATAGGATAGG 60.506 50.000 7.38 7.57 39.94 2.57
3633 3887 4.907875 CCTCCTTTGGTTCATAGGATAGGA 59.092 45.833 7.38 0.00 39.94 2.94
3634 3888 5.369699 CCTCCTTTGGTTCATAGGATAGGAA 59.630 44.000 7.38 0.00 39.94 3.36
3635 3889 6.044871 CCTCCTTTGGTTCATAGGATAGGAAT 59.955 42.308 7.38 0.00 43.72 3.01
3636 3890 7.237679 CCTCCTTTGGTTCATAGGATAGGAATA 59.762 40.741 7.38 0.00 43.72 1.75
3637 3891 8.757307 TCCTTTGGTTCATAGGATAGGAATAT 57.243 34.615 3.54 0.00 43.72 1.28
3638 3892 9.182642 TCCTTTGGTTCATAGGATAGGAATATT 57.817 33.333 3.54 0.00 43.72 1.28
3673 3927 4.760530 CTTCATAGGAAGTGGGATGACA 57.239 45.455 8.98 0.00 44.48 3.58
3674 3928 5.301835 CTTCATAGGAAGTGGGATGACAT 57.698 43.478 8.98 0.00 44.48 3.06
3675 3929 4.694760 TCATAGGAAGTGGGATGACATG 57.305 45.455 0.00 0.00 0.00 3.21
3676 3930 3.144506 CATAGGAAGTGGGATGACATGC 58.855 50.000 0.00 0.00 0.00 4.06
3677 3931 0.994247 AGGAAGTGGGATGACATGCA 59.006 50.000 9.33 0.00 0.00 3.96
3678 3932 1.567649 AGGAAGTGGGATGACATGCAT 59.432 47.619 9.33 0.00 40.77 3.96
3693 3947 8.929260 ATGACATGCATCTCAATTCCTATAAA 57.071 30.769 8.81 0.00 28.85 1.40
3694 3948 8.750515 TGACATGCATCTCAATTCCTATAAAA 57.249 30.769 1.73 0.00 0.00 1.52
3695 3949 9.187996 TGACATGCATCTCAATTCCTATAAAAA 57.812 29.630 1.73 0.00 0.00 1.94
3715 3969 4.811969 AAAAGAGATGCCATTTGATGCA 57.188 36.364 0.00 0.00 42.52 3.96
3724 3978 4.338012 TGCCATTTGATGCATAGGATAGG 58.662 43.478 0.00 0.00 31.31 2.57
3725 3979 4.043184 TGCCATTTGATGCATAGGATAGGA 59.957 41.667 0.00 0.00 31.31 2.94
3726 3980 5.012239 GCCATTTGATGCATAGGATAGGAA 58.988 41.667 0.00 0.00 0.00 3.36
3727 3981 5.655532 GCCATTTGATGCATAGGATAGGAAT 59.344 40.000 0.00 0.00 0.00 3.01
3728 3982 6.154021 GCCATTTGATGCATAGGATAGGAATT 59.846 38.462 0.00 0.00 0.00 2.17
3729 3983 7.310237 GCCATTTGATGCATAGGATAGGAATTT 60.310 37.037 0.00 0.00 0.00 1.82
3730 3984 8.591072 CCATTTGATGCATAGGATAGGAATTTT 58.409 33.333 0.00 0.00 0.00 1.82
3731 3985 9.991906 CATTTGATGCATAGGATAGGAATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
3747 4001 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
3748 4002 7.865706 GAATTTTTCCATTGAGTCTAGGCTA 57.134 36.000 0.00 0.00 0.00 3.93
3749 4003 8.281212 GAATTTTTCCATTGAGTCTAGGCTAA 57.719 34.615 0.00 0.00 0.00 3.09
3750 4004 8.829373 AATTTTTCCATTGAGTCTAGGCTAAT 57.171 30.769 0.00 0.00 0.00 1.73
3751 4005 7.630242 TTTTTCCATTGAGTCTAGGCTAATG 57.370 36.000 0.00 8.01 0.00 1.90
3752 4006 5.957771 TTCCATTGAGTCTAGGCTAATGT 57.042 39.130 17.62 0.00 0.00 2.71
3753 4007 5.957771 TCCATTGAGTCTAGGCTAATGTT 57.042 39.130 17.62 0.00 0.00 2.71
3754 4008 6.313519 TCCATTGAGTCTAGGCTAATGTTT 57.686 37.500 17.62 0.00 0.00 2.83
3755 4009 6.721318 TCCATTGAGTCTAGGCTAATGTTTT 58.279 36.000 17.62 0.00 0.00 2.43
3756 4010 7.175104 TCCATTGAGTCTAGGCTAATGTTTTT 58.825 34.615 17.62 0.00 0.00 1.94
3777 4031 6.552445 TTTTTCCCTTTGAAATGTGAAGGA 57.448 33.333 3.05 0.00 42.38 3.36
3778 4032 6.745794 TTTTCCCTTTGAAATGTGAAGGAT 57.254 33.333 3.05 0.00 42.38 3.24
3779 4033 6.745794 TTTCCCTTTGAAATGTGAAGGATT 57.254 33.333 3.05 0.00 41.97 3.01
3780 4034 5.726980 TCCCTTTGAAATGTGAAGGATTG 57.273 39.130 3.05 0.00 41.97 2.67
3781 4035 4.527816 TCCCTTTGAAATGTGAAGGATTGG 59.472 41.667 3.05 0.00 41.97 3.16
3782 4036 4.527816 CCCTTTGAAATGTGAAGGATTGGA 59.472 41.667 3.05 0.00 41.97 3.53
3783 4037 5.473039 CCTTTGAAATGTGAAGGATTGGAC 58.527 41.667 0.00 0.00 41.97 4.02
3784 4038 5.467035 TTTGAAATGTGAAGGATTGGACC 57.533 39.130 0.00 0.00 0.00 4.46
3785 4039 3.430453 TGAAATGTGAAGGATTGGACCC 58.570 45.455 0.00 0.00 0.00 4.46
3786 4040 3.075882 TGAAATGTGAAGGATTGGACCCT 59.924 43.478 0.00 0.00 35.03 4.34
3787 4041 4.290985 TGAAATGTGAAGGATTGGACCCTA 59.709 41.667 0.00 0.00 32.77 3.53
3788 4042 5.044179 TGAAATGTGAAGGATTGGACCCTAT 60.044 40.000 0.00 0.00 32.77 2.57
3789 4043 4.713792 ATGTGAAGGATTGGACCCTATC 57.286 45.455 2.50 2.50 32.77 2.08
3827 4081 5.965922 GAATCCATTCCTACAAACCAAAGG 58.034 41.667 0.00 0.00 0.00 3.11
3828 4082 3.773560 TCCATTCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
3829 4083 2.233676 CCATTCCTACAAACCAAAGGGC 59.766 50.000 0.00 0.00 37.90 5.19
3830 4084 3.165071 CATTCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
3831 4085 3.322191 TTCCTACAAACCAAAGGGCTT 57.678 42.857 0.00 0.00 37.90 4.35
3832 4086 2.871453 TCCTACAAACCAAAGGGCTTC 58.129 47.619 0.00 0.00 37.90 3.86
3833 4087 2.175931 TCCTACAAACCAAAGGGCTTCA 59.824 45.455 0.00 0.00 37.90 3.02
3834 4088 3.165071 CCTACAAACCAAAGGGCTTCAT 58.835 45.455 0.00 0.00 37.90 2.57
3835 4089 4.043561 TCCTACAAACCAAAGGGCTTCATA 59.956 41.667 0.00 0.00 37.90 2.15
3836 4090 4.399303 CCTACAAACCAAAGGGCTTCATAG 59.601 45.833 0.00 0.00 37.90 2.23
3837 4091 3.165071 ACAAACCAAAGGGCTTCATAGG 58.835 45.455 0.00 0.00 37.90 2.57
3838 4092 3.181423 ACAAACCAAAGGGCTTCATAGGA 60.181 43.478 0.00 0.00 37.90 2.94
3839 4093 3.825908 AACCAAAGGGCTTCATAGGAA 57.174 42.857 0.00 0.00 37.90 3.36
3840 4094 4.337264 AACCAAAGGGCTTCATAGGAAT 57.663 40.909 0.00 0.00 37.90 3.01
3841 4095 4.337264 ACCAAAGGGCTTCATAGGAATT 57.663 40.909 0.00 0.00 37.90 2.17
3842 4096 4.687976 ACCAAAGGGCTTCATAGGAATTT 58.312 39.130 0.00 0.00 37.90 1.82
3843 4097 5.093677 ACCAAAGGGCTTCATAGGAATTTT 58.906 37.500 0.00 0.00 37.90 1.82
3844 4098 5.547666 ACCAAAGGGCTTCATAGGAATTTTT 59.452 36.000 0.00 0.00 37.90 1.94
3845 4099 6.108687 CCAAAGGGCTTCATAGGAATTTTTC 58.891 40.000 0.00 0.00 31.34 2.29
3846 4100 9.159086 ACCAAAGGGCTTCATAGGAATTTTTCC 62.159 40.741 0.00 0.00 44.02 3.13
3862 4116 9.383519 GGAATTTTTCCTTTGAAAATCCTATCC 57.616 33.333 10.83 7.22 46.76 2.59
3867 4121 9.989296 TTTTCCTTTGAAAATCCTATCCTATGA 57.011 29.630 0.00 0.00 43.68 2.15
3868 4122 9.989296 TTTCCTTTGAAAATCCTATCCTATGAA 57.011 29.630 0.00 0.00 37.53 2.57
3869 4123 9.989296 TTCCTTTGAAAATCCTATCCTATGAAA 57.011 29.630 0.00 0.00 0.00 2.69
3880 4134 9.621239 ATCCTATCCTATGAAATTCCTACAAGA 57.379 33.333 0.00 0.00 0.00 3.02
3881 4135 9.621239 TCCTATCCTATGAAATTCCTACAAGAT 57.379 33.333 0.00 0.00 0.00 2.40
3885 4139 8.337118 TCCTATGAAATTCCTACAAGATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
3886 4140 9.447279 TCCTATGAAATTCCTACAAGATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
3887 4141 9.495572 CCTATGAAATTCCTACAAGATTCCTAC 57.504 37.037 0.00 0.00 0.00 3.18
3890 4144 9.753674 ATGAAATTCCTACAAGATTCCTACAAA 57.246 29.630 0.00 0.00 0.00 2.83
3891 4145 9.010029 TGAAATTCCTACAAGATTCCTACAAAC 57.990 33.333 0.00 0.00 0.00 2.93
3892 4146 7.939784 AATTCCTACAAGATTCCTACAAACC 57.060 36.000 0.00 0.00 0.00 3.27
3893 4147 6.442541 TTCCTACAAGATTCCTACAAACCA 57.557 37.500 0.00 0.00 0.00 3.67
3894 4148 6.442541 TCCTACAAGATTCCTACAAACCAA 57.557 37.500 0.00 0.00 0.00 3.67
3895 4149 6.843752 TCCTACAAGATTCCTACAAACCAAA 58.156 36.000 0.00 0.00 0.00 3.28
3896 4150 6.940298 TCCTACAAGATTCCTACAAACCAAAG 59.060 38.462 0.00 0.00 0.00 2.77
3897 4151 6.151144 CCTACAAGATTCCTACAAACCAAAGG 59.849 42.308 0.00 0.00 0.00 3.11
3898 4152 5.701224 ACAAGATTCCTACAAACCAAAGGA 58.299 37.500 0.00 0.00 37.64 3.36
3899 4153 5.770162 ACAAGATTCCTACAAACCAAAGGAG 59.230 40.000 0.00 0.00 40.43 3.69
3900 4154 4.923415 AGATTCCTACAAACCAAAGGAGG 58.077 43.478 0.00 0.00 40.43 4.30
3901 4155 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
3902 4156 1.074889 TCCTACAAACCAAAGGAGGCC 59.925 52.381 0.00 0.00 34.46 5.19
3903 4157 1.075536 CCTACAAACCAAAGGAGGCCT 59.924 52.381 3.86 3.86 33.87 5.19
3904 4158 2.437413 CTACAAACCAAAGGAGGCCTC 58.563 52.381 25.59 25.59 30.89 4.70
3905 4159 0.555769 ACAAACCAAAGGAGGCCTCA 59.444 50.000 33.29 0.00 30.89 3.86
3912 4166 4.488770 ACCAAAGGAGGCCTCAAATTTTA 58.511 39.130 33.29 0.00 30.89 1.52
3933 4187 8.849543 TTTTATAGTCTAACCATGTACTCCCT 57.150 34.615 0.00 0.00 0.00 4.20
3934 4188 8.474710 TTTATAGTCTAACCATGTACTCCCTC 57.525 38.462 0.00 0.00 0.00 4.30
3935 4189 3.644335 AGTCTAACCATGTACTCCCTCC 58.356 50.000 0.00 0.00 0.00 4.30
3936 4190 2.361438 GTCTAACCATGTACTCCCTCCG 59.639 54.545 0.00 0.00 0.00 4.63
3937 4191 2.024655 TCTAACCATGTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
3938 4192 1.652947 AACCATGTACTCCCTCCGTT 58.347 50.000 0.00 0.00 0.00 4.44
3939 4193 1.652947 ACCATGTACTCCCTCCGTTT 58.347 50.000 0.00 0.00 0.00 3.60
3940 4194 1.553704 ACCATGTACTCCCTCCGTTTC 59.446 52.381 0.00 0.00 0.00 2.78
3941 4195 1.831736 CCATGTACTCCCTCCGTTTCT 59.168 52.381 0.00 0.00 0.00 2.52
3942 4196 2.236395 CCATGTACTCCCTCCGTTTCTT 59.764 50.000 0.00 0.00 0.00 2.52
3943 4197 3.307480 CCATGTACTCCCTCCGTTTCTTT 60.307 47.826 0.00 0.00 0.00 2.52
3944 4198 4.324267 CATGTACTCCCTCCGTTTCTTTT 58.676 43.478 0.00 0.00 0.00 2.27
3945 4199 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
3946 4200 5.549742 TGTACTCCCTCCGTTTCTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
3947 4201 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
3948 4202 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
3949 4203 5.045012 ACTCCCTCCGTTTCTTTTTAGTT 57.955 39.130 0.00 0.00 0.00 2.24
3950 4204 5.061853 ACTCCCTCCGTTTCTTTTTAGTTC 58.938 41.667 0.00 0.00 0.00 3.01
3951 4205 4.060205 TCCCTCCGTTTCTTTTTAGTTCG 58.940 43.478 0.00 0.00 0.00 3.95
3952 4206 3.364664 CCCTCCGTTTCTTTTTAGTTCGC 60.365 47.826 0.00 0.00 0.00 4.70
3953 4207 3.249080 CCTCCGTTTCTTTTTAGTTCGCA 59.751 43.478 0.00 0.00 0.00 5.10
3954 4208 4.083484 CCTCCGTTTCTTTTTAGTTCGCAT 60.083 41.667 0.00 0.00 0.00 4.73
3955 4209 5.121142 CCTCCGTTTCTTTTTAGTTCGCATA 59.879 40.000 0.00 0.00 0.00 3.14
3956 4210 6.183360 CCTCCGTTTCTTTTTAGTTCGCATAT 60.183 38.462 0.00 0.00 0.00 1.78
3957 4211 7.010738 CCTCCGTTTCTTTTTAGTTCGCATATA 59.989 37.037 0.00 0.00 0.00 0.86
3958 4212 8.254178 TCCGTTTCTTTTTAGTTCGCATATAA 57.746 30.769 0.00 0.00 0.00 0.98
3959 4213 8.385111 TCCGTTTCTTTTTAGTTCGCATATAAG 58.615 33.333 0.00 0.00 0.00 1.73
3960 4214 8.385111 CCGTTTCTTTTTAGTTCGCATATAAGA 58.615 33.333 0.00 0.00 0.00 2.10
3961 4215 9.916397 CGTTTCTTTTTAGTTCGCATATAAGAT 57.084 29.630 0.00 0.00 0.00 2.40
3967 4221 9.997482 TTTTTAGTTCGCATATAAGATTTGGTC 57.003 29.630 0.00 0.00 0.00 4.02
3968 4222 8.725405 TTTAGTTCGCATATAAGATTTGGTCA 57.275 30.769 0.00 0.00 0.00 4.02
3969 4223 8.725405 TTAGTTCGCATATAAGATTTGGTCAA 57.275 30.769 0.00 0.00 0.00 3.18
3970 4224 7.624360 AGTTCGCATATAAGATTTGGTCAAA 57.376 32.000 0.00 0.00 34.46 2.69
3971 4225 7.697691 AGTTCGCATATAAGATTTGGTCAAAG 58.302 34.615 2.55 0.00 33.32 2.77
3972 4226 7.336931 AGTTCGCATATAAGATTTGGTCAAAGT 59.663 33.333 2.55 0.00 33.32 2.66
3973 4227 7.246674 TCGCATATAAGATTTGGTCAAAGTC 57.753 36.000 2.55 1.51 33.32 3.01
3974 4228 6.821160 TCGCATATAAGATTTGGTCAAAGTCA 59.179 34.615 2.55 0.00 33.32 3.41
3975 4229 7.335673 TCGCATATAAGATTTGGTCAAAGTCAA 59.664 33.333 2.55 0.00 33.32 3.18
3976 4230 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
3977 4231 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
3981 4235 6.773976 AGATTTGGTCAAAGTCAAACTTCA 57.226 33.333 2.55 0.00 37.47 3.02
3982 4236 7.352079 AGATTTGGTCAAAGTCAAACTTCAT 57.648 32.000 2.55 0.00 37.47 2.57
3983 4237 8.463930 AGATTTGGTCAAAGTCAAACTTCATA 57.536 30.769 2.55 0.00 37.47 2.15
3984 4238 8.912988 AGATTTGGTCAAAGTCAAACTTCATAA 58.087 29.630 2.55 0.00 37.47 1.90
3985 4239 9.528018 GATTTGGTCAAAGTCAAACTTCATAAA 57.472 29.630 2.55 0.00 37.47 1.40
3986 4240 8.696410 TTTGGTCAAAGTCAAACTTCATAAAC 57.304 30.769 0.00 0.00 37.47 2.01
3987 4241 7.639113 TGGTCAAAGTCAAACTTCATAAACT 57.361 32.000 0.00 0.00 37.47 2.66
3988 4242 8.062065 TGGTCAAAGTCAAACTTCATAAACTT 57.938 30.769 0.00 0.00 37.47 2.66
3989 4243 8.527810 TGGTCAAAGTCAAACTTCATAAACTTT 58.472 29.630 0.00 0.00 37.47 2.66
3990 4244 9.366216 GGTCAAAGTCAAACTTCATAAACTTTT 57.634 29.630 0.00 0.00 37.47 2.27
4072 4326 9.803315 ATGCATCATGATATCAATTTTCATAGC 57.197 29.630 9.99 3.03 0.00 2.97
4073 4327 8.798402 TGCATCATGATATCAATTTTCATAGCA 58.202 29.630 9.99 5.72 33.17 3.49
4074 4328 9.803315 GCATCATGATATCAATTTTCATAGCAT 57.197 29.630 9.99 0.00 32.94 3.79
4135 4389 9.897744 ATATATATTTGGTCAAACTTTGCATCG 57.102 29.630 0.00 0.00 32.51 3.84
4136 4390 2.132740 TTGGTCAAACTTTGCATCGC 57.867 45.000 0.00 0.00 0.00 4.58
4137 4391 1.317613 TGGTCAAACTTTGCATCGCT 58.682 45.000 0.00 0.00 0.00 4.93
4138 4392 1.680735 TGGTCAAACTTTGCATCGCTT 59.319 42.857 0.00 0.00 0.00 4.68
4139 4393 2.053627 GGTCAAACTTTGCATCGCTTG 58.946 47.619 0.00 0.00 0.00 4.01
4140 4394 2.287547 GGTCAAACTTTGCATCGCTTGA 60.288 45.455 0.00 0.00 0.00 3.02
4141 4395 2.721090 GTCAAACTTTGCATCGCTTGAC 59.279 45.455 13.01 13.01 33.85 3.18
4142 4396 2.618241 TCAAACTTTGCATCGCTTGACT 59.382 40.909 0.00 0.00 0.00 3.41
4143 4397 3.066621 TCAAACTTTGCATCGCTTGACTT 59.933 39.130 0.00 0.00 0.00 3.01
4144 4398 3.715628 AACTTTGCATCGCTTGACTTT 57.284 38.095 0.00 0.00 0.00 2.66
4145 4399 3.004024 ACTTTGCATCGCTTGACTTTG 57.996 42.857 0.00 0.00 0.00 2.77
4146 4400 2.618241 ACTTTGCATCGCTTGACTTTGA 59.382 40.909 0.00 0.00 0.00 2.69
4147 4401 3.254166 ACTTTGCATCGCTTGACTTTGAT 59.746 39.130 0.00 0.00 0.00 2.57
4148 4402 3.476295 TTGCATCGCTTGACTTTGATC 57.524 42.857 0.00 0.00 0.00 2.92
4149 4403 2.425539 TGCATCGCTTGACTTTGATCA 58.574 42.857 0.00 0.00 0.00 2.92
4150 4404 2.813172 TGCATCGCTTGACTTTGATCAA 59.187 40.909 3.38 3.38 37.08 2.57
4151 4405 3.252944 TGCATCGCTTGACTTTGATCAAA 59.747 39.130 19.45 19.45 38.12 2.69
4152 4406 4.082625 TGCATCGCTTGACTTTGATCAAAT 60.083 37.500 20.76 11.31 38.12 2.32
4153 4407 4.498323 GCATCGCTTGACTTTGATCAAATC 59.502 41.667 20.76 18.45 38.12 2.17
4154 4408 5.675575 GCATCGCTTGACTTTGATCAAATCT 60.676 40.000 20.76 9.49 38.12 2.40
4155 4409 5.947228 TCGCTTGACTTTGATCAAATCTT 57.053 34.783 20.76 8.81 38.12 2.40
4156 4410 7.466805 CATCGCTTGACTTTGATCAAATCTTA 58.533 34.615 20.76 6.00 38.12 2.10
4157 4411 7.615582 TCGCTTGACTTTGATCAAATCTTAT 57.384 32.000 20.76 5.24 38.12 1.73
4158 4412 8.716646 TCGCTTGACTTTGATCAAATCTTATA 57.283 30.769 20.76 4.88 38.12 0.98
4159 4413 9.330063 TCGCTTGACTTTGATCAAATCTTATAT 57.670 29.630 20.76 1.95 38.12 0.86
4182 4436 5.326200 ACAGACTAAATAGAGGTCAACGG 57.674 43.478 0.00 0.00 32.98 4.44
4183 4437 5.014858 ACAGACTAAATAGAGGTCAACGGA 58.985 41.667 0.00 0.00 32.98 4.69
4184 4438 5.125739 ACAGACTAAATAGAGGTCAACGGAG 59.874 44.000 0.00 0.00 32.98 4.63
4185 4439 4.645588 AGACTAAATAGAGGTCAACGGAGG 59.354 45.833 0.00 0.00 32.98 4.30
4186 4440 3.705072 ACTAAATAGAGGTCAACGGAGGG 59.295 47.826 0.00 0.00 0.00 4.30
4187 4441 2.544844 AATAGAGGTCAACGGAGGGA 57.455 50.000 0.00 0.00 0.00 4.20
4188 4442 2.074729 ATAGAGGTCAACGGAGGGAG 57.925 55.000 0.00 0.00 0.00 4.30
4189 4443 0.683504 TAGAGGTCAACGGAGGGAGC 60.684 60.000 0.00 0.00 34.50 4.70
4213 4467 7.836183 AGCATATAGGAAAAAGAGGTCAAACAT 59.164 33.333 0.00 0.00 0.00 2.71
4227 4481 0.536233 AAACATGCACACCAGCGGTA 60.536 50.000 0.00 0.00 37.31 4.02
4228 4482 0.955428 AACATGCACACCAGCGGTAG 60.955 55.000 0.00 0.00 37.31 3.18
4278 4572 4.208686 GCCTGCCCCTCTCGTACG 62.209 72.222 9.53 9.53 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 3.097877 TCATGCATACGATGGTGACTC 57.902 47.619 0.00 0.00 0.00 3.36
150 151 4.222336 AGGAGAGAGAGAGAGAGAGAGAG 58.778 52.174 0.00 0.00 0.00 3.20
151 152 4.271807 AGGAGAGAGAGAGAGAGAGAGA 57.728 50.000 0.00 0.00 0.00 3.10
152 153 5.121811 CAAAGGAGAGAGAGAGAGAGAGAG 58.878 50.000 0.00 0.00 0.00 3.20
153 154 4.536090 ACAAAGGAGAGAGAGAGAGAGAGA 59.464 45.833 0.00 0.00 0.00 3.10
154 155 4.848357 ACAAAGGAGAGAGAGAGAGAGAG 58.152 47.826 0.00 0.00 0.00 3.20
155 156 4.927267 ACAAAGGAGAGAGAGAGAGAGA 57.073 45.455 0.00 0.00 0.00 3.10
163 164 6.772605 TCATGATTTCAACAAAGGAGAGAGA 58.227 36.000 0.00 0.00 0.00 3.10
345 357 1.688735 TCCAAGATATCTGGCACCTCG 59.311 52.381 5.86 0.00 0.00 4.63
368 383 1.218316 GGGGTAGTGTTGAGCTCCG 59.782 63.158 12.15 0.00 0.00 4.63
384 399 3.012518 GACACATGAAGACAATGAGGGG 58.987 50.000 0.00 0.00 0.00 4.79
496 511 7.779841 GCTTCATGCAAACTCTGAAAGGGTC 62.780 48.000 0.00 0.00 45.52 4.46
553 568 8.870879 GTTGATAGACTTACAAGTTATTTCGCT 58.129 33.333 0.00 0.00 39.88 4.93
599 614 7.542477 CGTTATCTAAATGAGAACACACAGACT 59.458 37.037 4.47 0.00 44.55 3.24
660 676 8.316214 AGTAACAGAAAATATTCCCGTAACTCA 58.684 33.333 0.00 0.00 36.12 3.41
661 677 8.601476 CAGTAACAGAAAATATTCCCGTAACTC 58.399 37.037 0.00 0.00 36.12 3.01
760 776 8.354426 GCACAAGTTAAGGGTCAAGTAAAAATA 58.646 33.333 0.00 0.00 0.00 1.40
761 777 7.147811 TGCACAAGTTAAGGGTCAAGTAAAAAT 60.148 33.333 0.00 0.00 0.00 1.82
762 778 6.153000 TGCACAAGTTAAGGGTCAAGTAAAAA 59.847 34.615 0.00 0.00 0.00 1.94
763 779 5.652891 TGCACAAGTTAAGGGTCAAGTAAAA 59.347 36.000 0.00 0.00 0.00 1.52
764 780 5.194432 TGCACAAGTTAAGGGTCAAGTAAA 58.806 37.500 0.00 0.00 0.00 2.01
791 807 1.080025 CGGCGGCTATTAGCTACCC 60.080 63.158 15.02 11.33 41.99 3.69
792 808 1.737008 GCGGCGGCTATTAGCTACC 60.737 63.158 15.02 14.48 41.99 3.18
794 810 1.006571 GTGCGGCGGCTATTAGCTA 60.007 57.895 17.76 0.00 41.99 3.32
795 811 2.280186 GTGCGGCGGCTATTAGCT 60.280 61.111 17.76 0.00 41.99 3.32
796 812 3.346606 GGTGCGGCGGCTATTAGC 61.347 66.667 17.76 7.16 41.46 3.09
797 813 2.665185 GGGTGCGGCGGCTATTAG 60.665 66.667 17.76 0.00 40.82 1.73
798 814 3.471806 TGGGTGCGGCGGCTATTA 61.472 61.111 17.76 0.00 40.82 0.98
840 858 7.995463 TCAACCTTTTGTTTAATAAGTGTGC 57.005 32.000 0.00 0.00 34.00 4.57
882 934 6.854496 ACAAAACTAAGTTCTCAACGCATA 57.146 33.333 0.00 0.00 36.23 3.14
964 1020 6.280643 ACATATAGAGCGCTGTTAATGACAA 58.719 36.000 25.65 4.18 37.93 3.18
977 1033 5.769367 TGCACCTAGTTTACATATAGAGCG 58.231 41.667 0.00 0.00 0.00 5.03
1003 1059 5.728741 ACTTCTCCCTAGATGAAAGTCCATT 59.271 40.000 0.00 0.00 32.54 3.16
1033 1089 3.072476 TGAGGCCAGTATAAAGCATACCC 59.928 47.826 5.01 0.00 40.49 3.69
1126 1182 7.241042 TGTACTTGTCCAGTAGAGCTTTAAT 57.759 36.000 0.00 0.00 38.77 1.40
1170 1226 2.348454 AGGGAGAGAGCATACCCCT 58.652 57.895 0.00 0.00 42.97 4.79
1372 1438 1.502163 GCTTCTTGCGGGGATCATCG 61.502 60.000 0.00 0.00 0.00 3.84
1572 1638 3.119708 GGTGCTTCATTTGATCTCCACAC 60.120 47.826 0.00 0.00 0.00 3.82
1582 1648 3.527533 CATCAATGGGGTGCTTCATTTG 58.472 45.455 0.00 0.00 31.95 2.32
1606 1672 2.290641 TGGAGCGACCATGGTTGTATTT 60.291 45.455 29.17 15.02 44.64 1.40
1677 1743 7.122948 AGGAGGCTAGTAAATTATCATACCTCG 59.877 40.741 0.00 0.00 40.69 4.63
1697 1763 1.822506 AAAAGTTCGGCTTAGGAGGC 58.177 50.000 0.00 0.00 44.55 4.70
1705 1771 9.191995 CAATTAAACATAAGAAAAAGTTCGGCT 57.808 29.630 0.00 0.00 38.90 5.52
2260 2473 4.214310 CATGTAATCCCTAATGGCCAACA 58.786 43.478 10.96 6.54 0.00 3.33
2397 2625 0.469705 TTGCCTGTGATTTGCCTGGT 60.470 50.000 0.00 0.00 0.00 4.00
2539 2779 9.123902 CATCAAGAGGTCATTAATCCAATGTTA 57.876 33.333 0.00 0.00 43.88 2.41
2624 2865 9.956720 GTATGGTCTCATTTTAATGAATCAAGG 57.043 33.333 6.61 0.00 44.20 3.61
2661 2902 6.957020 ACCATTATAGGTATCTTGCTAGCTCT 59.043 38.462 17.23 4.79 40.98 4.09
2754 2995 7.030075 TCATGATGCCATACTAATGTTGTTG 57.970 36.000 0.00 0.00 0.00 3.33
2756 2997 6.208007 CCATCATGATGCCATACTAATGTTGT 59.792 38.462 27.24 0.00 37.49 3.32
2763 3004 3.583966 TGCTCCATCATGATGCCATACTA 59.416 43.478 27.24 8.66 37.49 1.82
2782 3023 4.402474 AGGTTTGCTTAAAACTGAGTTGCT 59.598 37.500 0.00 0.00 46.27 3.91
2864 3105 8.579682 AAGATGTTTGTTTGCTGTTAGAAATC 57.420 30.769 0.00 0.00 0.00 2.17
2906 3147 6.382919 TGCTTTCATAGTAGGTAAAACCCT 57.617 37.500 0.00 0.00 39.75 4.34
2931 3172 7.437793 ACCCTGCACAATTGAAAATAAAATG 57.562 32.000 13.59 0.00 0.00 2.32
2944 3185 1.004745 AGGAATTCGACCCTGCACAAT 59.995 47.619 0.00 0.00 0.00 2.71
2947 3188 0.804989 CAAGGAATTCGACCCTGCAC 59.195 55.000 0.00 0.00 32.12 4.57
2967 3208 5.579753 ATCAAATGGACAGGCTATCTCAT 57.420 39.130 0.00 0.00 0.00 2.90
2968 3209 5.128205 CAATCAAATGGACAGGCTATCTCA 58.872 41.667 0.00 0.00 0.00 3.27
3031 3272 1.928868 ACTGCAAAATGGGGAGGAAG 58.071 50.000 0.00 0.00 0.00 3.46
3032 3273 2.397044 AACTGCAAAATGGGGAGGAA 57.603 45.000 0.00 0.00 0.00 3.36
3105 3346 0.318762 AGCCACTTCCTCGAACACTC 59.681 55.000 0.00 0.00 0.00 3.51
3184 3425 1.330655 TAGCCTTAGCCAGCTTCGCT 61.331 55.000 9.87 9.87 40.56 4.93
3190 3431 1.544314 CCCTTGATAGCCTTAGCCAGC 60.544 57.143 0.00 0.00 41.25 4.85
3208 3449 1.064979 TCCTTTAACGCATTCTCCCCC 60.065 52.381 0.00 0.00 0.00 5.40
3209 3450 2.413310 TCCTTTAACGCATTCTCCCC 57.587 50.000 0.00 0.00 0.00 4.81
3210 3451 3.127030 CACTTCCTTTAACGCATTCTCCC 59.873 47.826 0.00 0.00 0.00 4.30
3273 3514 3.262420 ACTACATACTTGGCGCTCTTTG 58.738 45.455 7.64 0.55 0.00 2.77
3298 3539 3.003480 AGCAACTCATTTTCGTCTAGCC 58.997 45.455 0.00 0.00 0.00 3.93
3316 3557 5.316167 ACAGTAACCATGAATTGAGAAGCA 58.684 37.500 0.00 0.00 0.00 3.91
3327 3568 2.565391 ACACCATCGACAGTAACCATGA 59.435 45.455 0.00 0.00 0.00 3.07
3345 3586 3.836949 CAGCAGAGAGAGAAAGAGACAC 58.163 50.000 0.00 0.00 0.00 3.67
3353 3594 1.200252 GTACGTGCAGCAGAGAGAGAA 59.800 52.381 0.00 0.00 0.00 2.87
3355 3596 0.522286 CGTACGTGCAGCAGAGAGAG 60.522 60.000 7.22 0.00 0.00 3.20
3522 3775 8.739649 AGAATTTCAGTTCTTGTAGTACGTAC 57.260 34.615 18.10 18.10 34.92 3.67
3523 3776 9.403110 GAAGAATTTCAGTTCTTGTAGTACGTA 57.597 33.333 6.62 0.00 45.72 3.57
3524 3777 8.142551 AGAAGAATTTCAGTTCTTGTAGTACGT 58.857 33.333 6.62 0.00 45.72 3.57
3525 3778 8.428536 CAGAAGAATTTCAGTTCTTGTAGTACG 58.571 37.037 6.62 0.00 45.72 3.67
3536 3789 6.092807 GGTTCGATAGCAGAAGAATTTCAGTT 59.907 38.462 0.00 0.00 35.70 3.16
3563 3816 6.627395 ATTTGAGACGGATAGAGTAGACTG 57.373 41.667 0.00 0.00 0.00 3.51
3565 3818 6.711645 AGGTATTTGAGACGGATAGAGTAGAC 59.288 42.308 0.00 0.00 0.00 2.59
3566 3819 6.839454 AGGTATTTGAGACGGATAGAGTAGA 58.161 40.000 0.00 0.00 0.00 2.59
3567 3820 7.364200 CAAGGTATTTGAGACGGATAGAGTAG 58.636 42.308 0.00 0.00 39.21 2.57
3569 3822 5.452077 GCAAGGTATTTGAGACGGATAGAGT 60.452 44.000 0.00 0.00 39.21 3.24
3571 3824 4.202223 GGCAAGGTATTTGAGACGGATAGA 60.202 45.833 0.00 0.00 39.21 1.98
3574 3827 2.505819 AGGCAAGGTATTTGAGACGGAT 59.494 45.455 0.00 0.00 39.21 4.18
3608 3862 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
3609 3863 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
3610 3864 4.907875 TCCTATCCTATGAACCAAAGGAGG 59.092 45.833 0.00 0.00 42.53 4.30
3611 3865 6.500589 TTCCTATCCTATGAACCAAAGGAG 57.499 41.667 0.00 0.00 42.53 3.69
3612 3866 8.757307 ATATTCCTATCCTATGAACCAAAGGA 57.243 34.615 0.00 0.00 43.38 3.36
3653 3907 4.686944 GCATGTCATCCCACTTCCTATGAA 60.687 45.833 0.00 0.00 30.60 2.57
3654 3908 3.181451 GCATGTCATCCCACTTCCTATGA 60.181 47.826 0.00 0.00 0.00 2.15
3655 3909 3.144506 GCATGTCATCCCACTTCCTATG 58.855 50.000 0.00 0.00 0.00 2.23
3656 3910 2.779430 TGCATGTCATCCCACTTCCTAT 59.221 45.455 0.00 0.00 0.00 2.57
3657 3911 2.195727 TGCATGTCATCCCACTTCCTA 58.804 47.619 0.00 0.00 0.00 2.94
3658 3912 0.994247 TGCATGTCATCCCACTTCCT 59.006 50.000 0.00 0.00 0.00 3.36
3659 3913 1.952296 GATGCATGTCATCCCACTTCC 59.048 52.381 2.46 0.00 44.54 3.46
3668 3922 8.929260 TTTATAGGAATTGAGATGCATGTCAT 57.071 30.769 25.41 13.07 38.32 3.06
3669 3923 8.750515 TTTTATAGGAATTGAGATGCATGTCA 57.249 30.769 21.70 21.70 0.00 3.58
3693 3947 5.155278 TGCATCAAATGGCATCTCTTTTT 57.845 34.783 0.00 0.00 34.58 1.94
3694 3948 4.811969 TGCATCAAATGGCATCTCTTTT 57.188 36.364 0.00 0.00 34.58 2.27
3702 3956 4.043184 TCCTATCCTATGCATCAAATGGCA 59.957 41.667 0.19 0.00 45.23 4.92
3703 3957 4.592942 TCCTATCCTATGCATCAAATGGC 58.407 43.478 0.19 0.00 0.00 4.40
3704 3958 7.713734 AATTCCTATCCTATGCATCAAATGG 57.286 36.000 0.19 0.08 0.00 3.16
3705 3959 9.991906 AAAAATTCCTATCCTATGCATCAAATG 57.008 29.630 0.19 0.00 0.00 2.32
3707 3961 8.641541 GGAAAAATTCCTATCCTATGCATCAAA 58.358 33.333 0.19 0.00 46.57 2.69
3708 3962 8.181904 GGAAAAATTCCTATCCTATGCATCAA 57.818 34.615 0.19 0.00 46.57 2.57
3709 3963 7.765695 GGAAAAATTCCTATCCTATGCATCA 57.234 36.000 0.19 0.00 46.57 3.07
3724 3978 6.765915 AGCCTAGACTCAATGGAAAAATTC 57.234 37.500 0.00 0.00 0.00 2.17
3725 3979 8.689972 CATTAGCCTAGACTCAATGGAAAAATT 58.310 33.333 0.00 0.00 0.00 1.82
3726 3980 7.836183 ACATTAGCCTAGACTCAATGGAAAAAT 59.164 33.333 0.00 0.00 32.20 1.82
3727 3981 7.175104 ACATTAGCCTAGACTCAATGGAAAAA 58.825 34.615 0.00 0.00 32.20 1.94
3728 3982 6.721318 ACATTAGCCTAGACTCAATGGAAAA 58.279 36.000 0.00 0.00 32.20 2.29
3729 3983 6.313519 ACATTAGCCTAGACTCAATGGAAA 57.686 37.500 0.00 0.00 32.20 3.13
3730 3984 5.957771 ACATTAGCCTAGACTCAATGGAA 57.042 39.130 0.00 0.00 32.20 3.53
3731 3985 5.957771 AACATTAGCCTAGACTCAATGGA 57.042 39.130 0.00 0.00 32.20 3.41
3732 3986 7.396540 AAAAACATTAGCCTAGACTCAATGG 57.603 36.000 0.00 0.00 32.20 3.16
3757 4011 5.011943 CCAATCCTTCACATTTCAAAGGGAA 59.988 40.000 0.00 0.00 40.03 3.97
3758 4012 4.527816 CCAATCCTTCACATTTCAAAGGGA 59.472 41.667 0.00 0.00 40.03 4.20
3759 4013 4.527816 TCCAATCCTTCACATTTCAAAGGG 59.472 41.667 0.00 0.00 40.03 3.95
3760 4014 5.473039 GTCCAATCCTTCACATTTCAAAGG 58.527 41.667 0.00 0.00 40.80 3.11
3761 4015 5.473039 GGTCCAATCCTTCACATTTCAAAG 58.527 41.667 0.00 0.00 0.00 2.77
3762 4016 4.283212 GGGTCCAATCCTTCACATTTCAAA 59.717 41.667 0.00 0.00 0.00 2.69
3763 4017 3.831911 GGGTCCAATCCTTCACATTTCAA 59.168 43.478 0.00 0.00 0.00 2.69
3764 4018 3.075882 AGGGTCCAATCCTTCACATTTCA 59.924 43.478 0.00 0.00 0.00 2.69
3765 4019 3.701664 AGGGTCCAATCCTTCACATTTC 58.298 45.455 0.00 0.00 0.00 2.17
3766 4020 3.833559 AGGGTCCAATCCTTCACATTT 57.166 42.857 0.00 0.00 0.00 2.32
3767 4021 4.141158 GGATAGGGTCCAATCCTTCACATT 60.141 45.833 13.07 0.00 46.96 2.71
3768 4022 3.395941 GGATAGGGTCCAATCCTTCACAT 59.604 47.826 13.07 0.00 46.96 3.21
3769 4023 2.777692 GGATAGGGTCCAATCCTTCACA 59.222 50.000 13.07 0.00 46.96 3.58
3770 4024 3.493767 GGATAGGGTCCAATCCTTCAC 57.506 52.381 13.07 0.00 46.96 3.18
3804 4058 5.105351 CCCTTTGGTTTGTAGGAATGGATTC 60.105 44.000 0.00 0.00 36.08 2.52
3805 4059 4.777366 CCCTTTGGTTTGTAGGAATGGATT 59.223 41.667 0.00 0.00 0.00 3.01
3806 4060 4.352893 CCCTTTGGTTTGTAGGAATGGAT 58.647 43.478 0.00 0.00 0.00 3.41
3807 4061 3.773560 CCCTTTGGTTTGTAGGAATGGA 58.226 45.455 0.00 0.00 0.00 3.41
3808 4062 2.233676 GCCCTTTGGTTTGTAGGAATGG 59.766 50.000 0.00 0.00 0.00 3.16
3809 4063 3.165071 AGCCCTTTGGTTTGTAGGAATG 58.835 45.455 0.00 0.00 0.00 2.67
3810 4064 3.542969 AGCCCTTTGGTTTGTAGGAAT 57.457 42.857 0.00 0.00 0.00 3.01
3811 4065 3.227614 GAAGCCCTTTGGTTTGTAGGAA 58.772 45.455 0.00 0.00 34.87 3.36
3812 4066 2.175931 TGAAGCCCTTTGGTTTGTAGGA 59.824 45.455 0.00 0.00 34.87 2.94
3813 4067 2.593026 TGAAGCCCTTTGGTTTGTAGG 58.407 47.619 0.00 0.00 34.87 3.18
3814 4068 4.399303 CCTATGAAGCCCTTTGGTTTGTAG 59.601 45.833 0.00 0.00 34.87 2.74
3815 4069 4.043561 TCCTATGAAGCCCTTTGGTTTGTA 59.956 41.667 0.00 0.00 34.87 2.41
3816 4070 3.165071 CCTATGAAGCCCTTTGGTTTGT 58.835 45.455 0.00 0.00 34.87 2.83
3817 4071 3.430453 TCCTATGAAGCCCTTTGGTTTG 58.570 45.455 0.00 0.00 34.87 2.93
3818 4072 3.825908 TCCTATGAAGCCCTTTGGTTT 57.174 42.857 0.00 0.00 37.85 3.27
3819 4073 3.825908 TTCCTATGAAGCCCTTTGGTT 57.174 42.857 0.00 0.00 37.39 3.67
3820 4074 4.337264 AATTCCTATGAAGCCCTTTGGT 57.663 40.909 0.00 0.00 33.05 3.67
3821 4075 5.682234 AAAATTCCTATGAAGCCCTTTGG 57.318 39.130 0.00 0.00 33.05 3.28
3822 4076 6.108687 GGAAAAATTCCTATGAAGCCCTTTG 58.891 40.000 1.86 0.00 46.57 2.77
3823 4077 6.299805 GGAAAAATTCCTATGAAGCCCTTT 57.700 37.500 1.86 0.00 46.57 3.11
3824 4078 5.939764 GGAAAAATTCCTATGAAGCCCTT 57.060 39.130 1.86 0.00 46.57 3.95
3842 4096 9.989296 TTCATAGGATAGGATTTTCAAAGGAAA 57.011 29.630 0.00 0.00 41.13 3.13
3843 4097 9.989296 TTTCATAGGATAGGATTTTCAAAGGAA 57.011 29.630 0.00 0.00 28.27 3.36
3854 4108 9.621239 TCTTGTAGGAATTTCATAGGATAGGAT 57.379 33.333 0.00 0.00 28.27 3.24
3855 4109 9.621239 ATCTTGTAGGAATTTCATAGGATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
3859 4113 8.953665 AGGAATCTTGTAGGAATTTCATAGGAT 58.046 33.333 0.00 0.00 0.00 3.24
3860 4114 8.337118 AGGAATCTTGTAGGAATTTCATAGGA 57.663 34.615 0.00 0.00 0.00 2.94
3861 4115 9.495572 GTAGGAATCTTGTAGGAATTTCATAGG 57.504 37.037 0.00 0.00 0.00 2.57
3864 4118 9.753674 TTTGTAGGAATCTTGTAGGAATTTCAT 57.246 29.630 0.00 0.00 0.00 2.57
3865 4119 9.010029 GTTTGTAGGAATCTTGTAGGAATTTCA 57.990 33.333 0.00 0.00 0.00 2.69
3866 4120 8.459635 GGTTTGTAGGAATCTTGTAGGAATTTC 58.540 37.037 0.00 0.00 0.00 2.17
3867 4121 7.947890 TGGTTTGTAGGAATCTTGTAGGAATTT 59.052 33.333 0.00 0.00 0.00 1.82
3868 4122 7.466804 TGGTTTGTAGGAATCTTGTAGGAATT 58.533 34.615 0.00 0.00 0.00 2.17
3869 4123 7.027874 TGGTTTGTAGGAATCTTGTAGGAAT 57.972 36.000 0.00 0.00 0.00 3.01
3870 4124 6.442541 TGGTTTGTAGGAATCTTGTAGGAA 57.557 37.500 0.00 0.00 0.00 3.36
3871 4125 6.442541 TTGGTTTGTAGGAATCTTGTAGGA 57.557 37.500 0.00 0.00 0.00 2.94
3872 4126 6.151144 CCTTTGGTTTGTAGGAATCTTGTAGG 59.849 42.308 0.00 0.00 0.00 3.18
3873 4127 6.940298 TCCTTTGGTTTGTAGGAATCTTGTAG 59.060 38.462 0.00 0.00 35.20 2.74
3874 4128 6.843752 TCCTTTGGTTTGTAGGAATCTTGTA 58.156 36.000 0.00 0.00 35.20 2.41
3875 4129 5.701224 TCCTTTGGTTTGTAGGAATCTTGT 58.299 37.500 0.00 0.00 35.20 3.16
3876 4130 5.183904 CCTCCTTTGGTTTGTAGGAATCTTG 59.816 44.000 0.00 0.00 37.61 3.02
3877 4131 5.325239 CCTCCTTTGGTTTGTAGGAATCTT 58.675 41.667 0.00 0.00 37.61 2.40
3878 4132 4.811063 GCCTCCTTTGGTTTGTAGGAATCT 60.811 45.833 0.00 0.00 37.61 2.40
3879 4133 3.444034 GCCTCCTTTGGTTTGTAGGAATC 59.556 47.826 0.00 0.00 37.61 2.52
3880 4134 3.431415 GCCTCCTTTGGTTTGTAGGAAT 58.569 45.455 0.00 0.00 37.61 3.01
3881 4135 2.490168 GGCCTCCTTTGGTTTGTAGGAA 60.490 50.000 0.00 0.00 37.61 3.36
3882 4136 1.074889 GGCCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
3883 4137 1.075536 AGGCCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
3884 4138 2.224769 TGAGGCCTCCTTTGGTTTGTAG 60.225 50.000 29.95 0.00 31.76 2.74
3885 4139 1.777878 TGAGGCCTCCTTTGGTTTGTA 59.222 47.619 29.95 3.38 31.76 2.41
3886 4140 0.555769 TGAGGCCTCCTTTGGTTTGT 59.444 50.000 29.95 0.00 31.76 2.83
3887 4141 1.703411 TTGAGGCCTCCTTTGGTTTG 58.297 50.000 29.95 0.00 31.76 2.93
3888 4142 2.470057 TTTGAGGCCTCCTTTGGTTT 57.530 45.000 29.95 0.00 31.76 3.27
3889 4143 2.702270 ATTTGAGGCCTCCTTTGGTT 57.298 45.000 29.95 5.03 31.76 3.67
3890 4144 2.702270 AATTTGAGGCCTCCTTTGGT 57.298 45.000 29.95 7.60 31.76 3.67
3891 4145 5.682234 ATAAAATTTGAGGCCTCCTTTGG 57.318 39.130 29.95 0.00 31.76 3.28
3892 4146 7.340487 AGACTATAAAATTTGAGGCCTCCTTTG 59.660 37.037 29.95 15.32 31.76 2.77
3893 4147 7.414266 AGACTATAAAATTTGAGGCCTCCTTT 58.586 34.615 29.95 22.65 31.76 3.11
3894 4148 6.974795 AGACTATAAAATTTGAGGCCTCCTT 58.025 36.000 29.95 17.20 31.76 3.36
3895 4149 6.582929 AGACTATAAAATTTGAGGCCTCCT 57.417 37.500 29.95 11.94 36.03 3.69
3896 4150 7.228906 GGTTAGACTATAAAATTTGAGGCCTCC 59.771 40.741 29.95 12.55 0.00 4.30
3897 4151 7.773690 TGGTTAGACTATAAAATTTGAGGCCTC 59.226 37.037 26.78 26.78 0.00 4.70
3898 4152 7.639378 TGGTTAGACTATAAAATTTGAGGCCT 58.361 34.615 3.86 3.86 0.00 5.19
3899 4153 7.875327 TGGTTAGACTATAAAATTTGAGGCC 57.125 36.000 0.00 0.00 0.00 5.19
3900 4154 8.903820 ACATGGTTAGACTATAAAATTTGAGGC 58.096 33.333 0.00 0.00 0.00 4.70
3912 4166 5.395611 GGAGGGAGTACATGGTTAGACTAT 58.604 45.833 0.00 0.00 0.00 2.12
3929 4183 4.060205 CGAACTAAAAAGAAACGGAGGGA 58.940 43.478 0.00 0.00 0.00 4.20
3930 4184 3.364664 GCGAACTAAAAAGAAACGGAGGG 60.365 47.826 0.00 0.00 0.00 4.30
3931 4185 3.249080 TGCGAACTAAAAAGAAACGGAGG 59.751 43.478 0.00 0.00 0.00 4.30
3932 4186 4.461992 TGCGAACTAAAAAGAAACGGAG 57.538 40.909 0.00 0.00 0.00 4.63
3933 4187 6.730960 ATATGCGAACTAAAAAGAAACGGA 57.269 33.333 0.00 0.00 0.00 4.69
3934 4188 8.385111 TCTTATATGCGAACTAAAAAGAAACGG 58.615 33.333 0.00 0.00 0.00 4.44
3935 4189 9.916397 ATCTTATATGCGAACTAAAAAGAAACG 57.084 29.630 0.00 0.00 0.00 3.60
3941 4195 9.997482 GACCAAATCTTATATGCGAACTAAAAA 57.003 29.630 0.00 0.00 0.00 1.94
3942 4196 9.168451 TGACCAAATCTTATATGCGAACTAAAA 57.832 29.630 0.00 0.00 0.00 1.52
3943 4197 8.725405 TGACCAAATCTTATATGCGAACTAAA 57.275 30.769 0.00 0.00 0.00 1.85
3944 4198 8.725405 TTGACCAAATCTTATATGCGAACTAA 57.275 30.769 0.00 0.00 0.00 2.24
3945 4199 8.725405 TTTGACCAAATCTTATATGCGAACTA 57.275 30.769 0.00 0.00 0.00 2.24
3946 4200 7.336931 ACTTTGACCAAATCTTATATGCGAACT 59.663 33.333 0.00 0.00 0.00 3.01
3947 4201 7.472543 ACTTTGACCAAATCTTATATGCGAAC 58.527 34.615 0.00 0.00 0.00 3.95
3948 4202 7.335673 TGACTTTGACCAAATCTTATATGCGAA 59.664 33.333 0.00 0.00 0.00 4.70
3949 4203 6.821160 TGACTTTGACCAAATCTTATATGCGA 59.179 34.615 0.00 0.00 0.00 5.10
3950 4204 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
3951 4205 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
3955 4209 8.912988 TGAAGTTTGACTTTGACCAAATCTTAT 58.087 29.630 0.00 0.00 38.80 1.73
3956 4210 8.287439 TGAAGTTTGACTTTGACCAAATCTTA 57.713 30.769 0.00 0.00 38.80 2.10
3957 4211 7.169158 TGAAGTTTGACTTTGACCAAATCTT 57.831 32.000 0.00 0.00 38.80 2.40
3958 4212 6.773976 TGAAGTTTGACTTTGACCAAATCT 57.226 33.333 0.00 0.00 38.80 2.40
3959 4213 9.528018 TTTATGAAGTTTGACTTTGACCAAATC 57.472 29.630 0.00 0.00 38.80 2.17
3960 4214 9.313118 GTTTATGAAGTTTGACTTTGACCAAAT 57.687 29.630 0.00 0.00 38.80 2.32
3961 4215 8.527810 AGTTTATGAAGTTTGACTTTGACCAAA 58.472 29.630 0.00 0.00 38.80 3.28
3962 4216 8.062065 AGTTTATGAAGTTTGACTTTGACCAA 57.938 30.769 0.00 0.00 38.80 3.67
3963 4217 7.639113 AGTTTATGAAGTTTGACTTTGACCA 57.361 32.000 0.00 0.00 38.80 4.02
3964 4218 8.926715 AAAGTTTATGAAGTTTGACTTTGACC 57.073 30.769 2.45 0.00 38.80 4.02
4046 4300 9.803315 GCTATGAAAATTGATATCATGATGCAT 57.197 29.630 18.72 0.00 35.53 3.96
4047 4301 8.798402 TGCTATGAAAATTGATATCATGATGCA 58.202 29.630 18.72 12.96 35.53 3.96
4048 4302 9.803315 ATGCTATGAAAATTGATATCATGATGC 57.197 29.630 18.72 10.53 35.53 3.91
4109 4363 9.897744 CGATGCAAAGTTTGACCAAATATATAT 57.102 29.630 19.82 0.00 32.36 0.86
4110 4364 7.860373 GCGATGCAAAGTTTGACCAAATATATA 59.140 33.333 19.82 0.00 32.36 0.86
4111 4365 6.697019 GCGATGCAAAGTTTGACCAAATATAT 59.303 34.615 19.82 0.00 32.36 0.86
4112 4366 6.033341 GCGATGCAAAGTTTGACCAAATATA 58.967 36.000 19.82 0.00 32.36 0.86
4113 4367 4.864247 GCGATGCAAAGTTTGACCAAATAT 59.136 37.500 19.82 1.65 32.36 1.28
4114 4368 4.022416 AGCGATGCAAAGTTTGACCAAATA 60.022 37.500 19.82 0.00 32.36 1.40
4115 4369 3.059166 GCGATGCAAAGTTTGACCAAAT 58.941 40.909 19.82 4.17 32.36 2.32
4116 4370 2.100584 AGCGATGCAAAGTTTGACCAAA 59.899 40.909 19.82 0.00 0.00 3.28
4117 4371 1.680735 AGCGATGCAAAGTTTGACCAA 59.319 42.857 19.82 1.80 0.00 3.67
4118 4372 1.317613 AGCGATGCAAAGTTTGACCA 58.682 45.000 19.82 8.93 0.00 4.02
4119 4373 2.053627 CAAGCGATGCAAAGTTTGACC 58.946 47.619 19.82 3.11 31.58 4.02
4120 4374 2.721090 GTCAAGCGATGCAAAGTTTGAC 59.279 45.455 25.90 25.90 45.83 3.18
4121 4375 2.618241 AGTCAAGCGATGCAAAGTTTGA 59.382 40.909 19.82 16.07 35.72 2.69
4122 4376 3.004024 AGTCAAGCGATGCAAAGTTTG 57.996 42.857 11.41 11.41 0.00 2.93
4123 4377 3.715628 AAGTCAAGCGATGCAAAGTTT 57.284 38.095 0.00 0.00 0.00 2.66
4124 4378 3.066621 TCAAAGTCAAGCGATGCAAAGTT 59.933 39.130 0.00 0.00 0.00 2.66
4125 4379 2.618241 TCAAAGTCAAGCGATGCAAAGT 59.382 40.909 0.00 0.00 0.00 2.66
4126 4380 3.272439 TCAAAGTCAAGCGATGCAAAG 57.728 42.857 0.00 0.00 0.00 2.77
4127 4381 3.252944 TGATCAAAGTCAAGCGATGCAAA 59.747 39.130 0.00 0.00 0.00 3.68
4128 4382 2.813172 TGATCAAAGTCAAGCGATGCAA 59.187 40.909 0.00 0.00 0.00 4.08
4129 4383 2.425539 TGATCAAAGTCAAGCGATGCA 58.574 42.857 0.00 0.00 0.00 3.96
4130 4384 3.476295 TTGATCAAAGTCAAGCGATGC 57.524 42.857 5.45 0.00 33.41 3.91
4131 4385 5.877031 AGATTTGATCAAAGTCAAGCGATG 58.123 37.500 24.17 0.00 39.13 3.84
4132 4386 6.506500 AAGATTTGATCAAAGTCAAGCGAT 57.493 33.333 24.17 5.99 39.13 4.58
4133 4387 5.947228 AAGATTTGATCAAAGTCAAGCGA 57.053 34.783 24.17 0.15 39.13 4.93
4156 4410 8.794553 CCGTTGACCTCTATTTAGTCTGTATAT 58.205 37.037 0.00 0.00 0.00 0.86
4157 4411 7.994911 TCCGTTGACCTCTATTTAGTCTGTATA 59.005 37.037 0.00 0.00 0.00 1.47
4158 4412 6.832384 TCCGTTGACCTCTATTTAGTCTGTAT 59.168 38.462 0.00 0.00 0.00 2.29
4159 4413 6.182627 TCCGTTGACCTCTATTTAGTCTGTA 58.817 40.000 0.00 0.00 0.00 2.74
4160 4414 5.014858 TCCGTTGACCTCTATTTAGTCTGT 58.985 41.667 0.00 0.00 0.00 3.41
4161 4415 5.450688 CCTCCGTTGACCTCTATTTAGTCTG 60.451 48.000 0.00 0.00 0.00 3.51
4162 4416 4.645588 CCTCCGTTGACCTCTATTTAGTCT 59.354 45.833 0.00 0.00 0.00 3.24
4163 4417 4.202131 CCCTCCGTTGACCTCTATTTAGTC 60.202 50.000 0.00 0.00 0.00 2.59
4164 4418 3.705072 CCCTCCGTTGACCTCTATTTAGT 59.295 47.826 0.00 0.00 0.00 2.24
4165 4419 3.958798 TCCCTCCGTTGACCTCTATTTAG 59.041 47.826 0.00 0.00 0.00 1.85
4166 4420 3.958798 CTCCCTCCGTTGACCTCTATTTA 59.041 47.826 0.00 0.00 0.00 1.40
4167 4421 2.766828 CTCCCTCCGTTGACCTCTATTT 59.233 50.000 0.00 0.00 0.00 1.40
4168 4422 2.389715 CTCCCTCCGTTGACCTCTATT 58.610 52.381 0.00 0.00 0.00 1.73
4169 4423 2.030045 GCTCCCTCCGTTGACCTCTAT 61.030 57.143 0.00 0.00 0.00 1.98
4170 4424 0.683504 GCTCCCTCCGTTGACCTCTA 60.684 60.000 0.00 0.00 0.00 2.43
4171 4425 1.985116 GCTCCCTCCGTTGACCTCT 60.985 63.158 0.00 0.00 0.00 3.69
4172 4426 1.617947 ATGCTCCCTCCGTTGACCTC 61.618 60.000 0.00 0.00 0.00 3.85
4173 4427 0.325296 TATGCTCCCTCCGTTGACCT 60.325 55.000 0.00 0.00 0.00 3.85
4174 4428 0.759346 ATATGCTCCCTCCGTTGACC 59.241 55.000 0.00 0.00 0.00 4.02
4175 4429 2.028930 CCTATATGCTCCCTCCGTTGAC 60.029 54.545 0.00 0.00 0.00 3.18
4176 4430 2.158370 TCCTATATGCTCCCTCCGTTGA 60.158 50.000 0.00 0.00 0.00 3.18
4177 4431 2.248248 TCCTATATGCTCCCTCCGTTG 58.752 52.381 0.00 0.00 0.00 4.10
4178 4432 2.696526 TCCTATATGCTCCCTCCGTT 57.303 50.000 0.00 0.00 0.00 4.44
4179 4433 2.696526 TTCCTATATGCTCCCTCCGT 57.303 50.000 0.00 0.00 0.00 4.69
4180 4434 4.040461 TCTTTTTCCTATATGCTCCCTCCG 59.960 45.833 0.00 0.00 0.00 4.63
4181 4435 5.513962 CCTCTTTTTCCTATATGCTCCCTCC 60.514 48.000 0.00 0.00 0.00 4.30
4182 4436 5.072464 ACCTCTTTTTCCTATATGCTCCCTC 59.928 44.000 0.00 0.00 0.00 4.30
4183 4437 4.978388 ACCTCTTTTTCCTATATGCTCCCT 59.022 41.667 0.00 0.00 0.00 4.20
4184 4438 5.163195 TGACCTCTTTTTCCTATATGCTCCC 60.163 44.000 0.00 0.00 0.00 4.30
4185 4439 5.930135 TGACCTCTTTTTCCTATATGCTCC 58.070 41.667 0.00 0.00 0.00 4.70
4186 4440 7.336931 TGTTTGACCTCTTTTTCCTATATGCTC 59.663 37.037 0.00 0.00 0.00 4.26
4187 4441 7.175104 TGTTTGACCTCTTTTTCCTATATGCT 58.825 34.615 0.00 0.00 0.00 3.79
4188 4442 7.391148 TGTTTGACCTCTTTTTCCTATATGC 57.609 36.000 0.00 0.00 0.00 3.14
4189 4443 7.917505 GCATGTTTGACCTCTTTTTCCTATATG 59.082 37.037 0.00 0.00 0.00 1.78
4213 4467 3.238497 ACCTACCGCTGGTGTGCA 61.238 61.111 10.01 0.00 36.19 4.57
4227 4481 3.496870 GGAGAAGTGTGACAAATCCACCT 60.497 47.826 0.00 0.00 33.80 4.00
4228 4482 2.814336 GGAGAAGTGTGACAAATCCACC 59.186 50.000 0.00 0.00 33.80 4.61
4278 4572 0.037232 AAAGAGTACGCTGAGCACCC 60.037 55.000 4.88 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.