Multiple sequence alignment - TraesCS7A01G212000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G212000 chr7A 100.000 6426 0 0 1 6426 174922142 174915717 0.000000e+00 11867
1 TraesCS7A01G212000 chr7D 93.272 2839 140 27 3623 6425 172258677 172255854 0.000000e+00 4137
2 TraesCS7A01G212000 chr7D 93.288 2190 111 18 1372 3552 172263121 172260959 0.000000e+00 3197
3 TraesCS7A01G212000 chr7D 81.570 917 69 42 358 1213 172264100 172263223 0.000000e+00 665
4 TraesCS7A01G212000 chr7D 87.333 300 15 13 1 292 172264407 172264123 8.040000e-84 322
5 TraesCS7A01G212000 chr7B 87.817 3275 219 77 359 3552 138259103 138255928 0.000000e+00 3672
6 TraesCS7A01G212000 chr7B 92.734 2271 126 25 3549 5790 138255959 138253699 0.000000e+00 3243
7 TraesCS7A01G212000 chr7B 88.721 594 46 7 5850 6426 138253691 138253102 0.000000e+00 706
8 TraesCS7A01G212000 chr7B 87.413 286 15 12 1 279 138259421 138259150 6.260000e-80 309


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G212000 chr7A 174915717 174922142 6425 True 11867.00 11867 100.00000 1 6426 1 chr7A.!!$R1 6425
1 TraesCS7A01G212000 chr7D 172255854 172264407 8553 True 2080.25 4137 88.86575 1 6425 4 chr7D.!!$R1 6424
2 TraesCS7A01G212000 chr7B 138253102 138259421 6319 True 1982.50 3672 89.17125 1 6426 4 chr7B.!!$R1 6425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 653 0.097325 TTATAAAACAAGCGCGGCGG 59.903 50.000 25.03 10.11 0.00 6.13 F
1742 1835 0.036199 TTGGATGCATTTGCTTGGGC 60.036 50.000 0.00 0.00 42.66 5.36 F
1931 2025 0.038744 CATTGGAGGTGCAGAGGGTT 59.961 55.000 0.00 0.00 0.00 4.11 F
2400 2494 1.080705 GCAGAGTACGTTGAGCCGT 60.081 57.895 0.00 0.00 44.50 5.68 F
3899 6260 1.413382 GAGCGCATCGGAGATACTTG 58.587 55.000 11.47 0.00 45.12 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 2358 0.036022 GCAGTGCTCTTCTCTTGGGT 59.964 55.000 8.18 0.00 0.0 4.51 R
3674 6018 0.319900 ATCAGTCACCAGTGCACGAC 60.320 55.000 12.01 12.57 0.0 4.34 R
3785 6146 0.605319 TCCGACCCTGTTTCATGCAC 60.605 55.000 0.00 0.00 0.0 4.57 R
3982 6343 0.813610 CGTCCACAAGTGTCTTGCCA 60.814 55.000 9.06 0.00 0.0 4.92 R
5427 7789 1.468914 GAAGACGGCAAAGGGATGTTC 59.531 52.381 0.00 0.00 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.948678 CACCACCGTTCAACCGATTT 59.051 50.000 0.00 0.00 0.00 2.17
45 46 2.029649 CCGATTTGGGGATCATCAATGC 60.030 50.000 0.00 0.00 0.00 3.56
57 58 4.884257 CAATGCCCGCTGCCATGC 62.884 66.667 0.00 0.00 40.16 4.06
59 60 3.719646 AATGCCCGCTGCCATGCTA 62.720 57.895 0.00 0.00 40.16 3.49
60 61 2.989173 AATGCCCGCTGCCATGCTAT 62.989 55.000 0.00 0.00 40.16 2.97
90 91 2.028876 CATGATGAGGCAAATGGAGCA 58.971 47.619 0.00 0.00 0.00 4.26
91 92 2.219080 TGATGAGGCAAATGGAGCAA 57.781 45.000 0.00 0.00 0.00 3.91
199 205 1.856265 GCCTGCACTTTCCTTCACGG 61.856 60.000 0.00 0.00 0.00 4.94
200 206 1.576421 CTGCACTTTCCTTCACGGC 59.424 57.895 0.00 0.00 0.00 5.68
201 207 0.886490 CTGCACTTTCCTTCACGGCT 60.886 55.000 0.00 0.00 0.00 5.52
202 208 0.465460 TGCACTTTCCTTCACGGCTT 60.465 50.000 0.00 0.00 0.00 4.35
203 209 0.238553 GCACTTTCCTTCACGGCTTC 59.761 55.000 0.00 0.00 0.00 3.86
204 210 1.593196 CACTTTCCTTCACGGCTTCA 58.407 50.000 0.00 0.00 0.00 3.02
211 217 1.507141 CTTCACGGCTTCACCACCAC 61.507 60.000 0.00 0.00 39.03 4.16
234 243 4.511826 CCGTCTGAAATAGGGTAATTCTGC 59.488 45.833 0.00 0.00 0.00 4.26
239 248 4.569162 TGAAATAGGGTAATTCTGCGAACG 59.431 41.667 0.00 0.00 0.00 3.95
245 254 3.425404 GGTAATTCTGCGAACGTACGTA 58.575 45.455 23.12 4.71 35.59 3.57
275 285 6.536224 AGAAAACATGCAAAGTTTCCAAGAAG 59.464 34.615 17.56 0.00 38.17 2.85
281 291 4.462483 TGCAAAGTTTCCAAGAAGTTGTCT 59.538 37.500 0.00 0.00 38.69 3.41
283 293 5.869344 GCAAAGTTTCCAAGAAGTTGTCTTT 59.131 36.000 0.00 0.00 44.64 2.52
284 294 6.183360 GCAAAGTTTCCAAGAAGTTGTCTTTG 60.183 38.462 0.00 0.00 44.64 2.77
285 295 6.834168 AAGTTTCCAAGAAGTTGTCTTTGA 57.166 33.333 0.00 0.00 44.64 2.69
286 296 7.410120 AAGTTTCCAAGAAGTTGTCTTTGAT 57.590 32.000 0.00 0.00 44.64 2.57
287 297 7.032377 AGTTTCCAAGAAGTTGTCTTTGATC 57.968 36.000 0.00 0.00 44.64 2.92
288 298 6.603201 AGTTTCCAAGAAGTTGTCTTTGATCA 59.397 34.615 0.00 0.00 44.64 2.92
289 299 7.286316 AGTTTCCAAGAAGTTGTCTTTGATCAT 59.714 33.333 0.00 0.00 44.64 2.45
290 300 6.808008 TCCAAGAAGTTGTCTTTGATCATC 57.192 37.500 0.00 0.00 44.64 2.92
291 301 6.298361 TCCAAGAAGTTGTCTTTGATCATCA 58.702 36.000 0.00 0.00 44.64 3.07
292 302 6.772233 TCCAAGAAGTTGTCTTTGATCATCAA 59.228 34.615 0.00 0.00 44.64 2.57
293 303 6.860023 CCAAGAAGTTGTCTTTGATCATCAAC 59.140 38.462 17.68 17.68 44.64 3.18
296 306 8.174733 AGAAGTTGTCTTTGATCATCAACAAT 57.825 30.769 22.74 16.06 40.19 2.71
299 309 7.944061 AGTTGTCTTTGATCATCAACAATTCA 58.056 30.769 22.74 0.00 40.19 2.57
301 311 9.033481 GTTGTCTTTGATCATCAACAATTCAAA 57.967 29.630 19.17 0.00 35.89 2.69
302 312 9.597170 TTGTCTTTGATCATCAACAATTCAAAA 57.403 25.926 0.00 0.00 35.89 2.44
303 313 9.597170 TGTCTTTGATCATCAACAATTCAAAAA 57.403 25.926 0.00 0.00 35.89 1.94
308 318 8.537049 TGATCATCAACAATTCAAAAATGACC 57.463 30.769 0.00 0.00 0.00 4.02
313 323 4.006780 ACAATTCAAAAATGACCCTGGC 57.993 40.909 0.00 0.00 0.00 4.85
315 325 1.988293 TTCAAAAATGACCCTGGCGA 58.012 45.000 0.00 0.00 0.00 5.54
316 326 1.988293 TCAAAAATGACCCTGGCGAA 58.012 45.000 0.00 0.00 0.00 4.70
317 327 2.524306 TCAAAAATGACCCTGGCGAAT 58.476 42.857 0.00 0.00 0.00 3.34
318 328 3.691575 TCAAAAATGACCCTGGCGAATA 58.308 40.909 0.00 0.00 0.00 1.75
320 330 2.799126 AAATGACCCTGGCGAATACA 57.201 45.000 0.00 0.00 0.00 2.29
321 331 2.038387 AATGACCCTGGCGAATACAC 57.962 50.000 0.00 0.00 0.00 2.90
331 344 2.193306 GCGAATACACATTTGCAGGG 57.807 50.000 4.99 0.00 46.77 4.45
338 351 1.972795 ACACATTTGCAGGGCATCTTT 59.027 42.857 0.00 0.00 38.76 2.52
339 352 2.369532 ACACATTTGCAGGGCATCTTTT 59.630 40.909 0.00 0.00 38.76 2.27
340 353 3.181452 ACACATTTGCAGGGCATCTTTTT 60.181 39.130 0.00 0.00 38.76 1.94
341 354 3.434299 CACATTTGCAGGGCATCTTTTTC 59.566 43.478 0.00 0.00 38.76 2.29
342 355 3.325716 ACATTTGCAGGGCATCTTTTTCT 59.674 39.130 0.00 0.00 38.76 2.52
343 356 4.202388 ACATTTGCAGGGCATCTTTTTCTT 60.202 37.500 0.00 0.00 38.76 2.52
344 357 4.420522 TTTGCAGGGCATCTTTTTCTTT 57.579 36.364 0.00 0.00 38.76 2.52
345 358 4.420522 TTGCAGGGCATCTTTTTCTTTT 57.579 36.364 0.00 0.00 38.76 2.27
346 359 4.420522 TGCAGGGCATCTTTTTCTTTTT 57.579 36.364 0.00 0.00 31.71 1.94
367 380 0.534877 TGCGAGTGACATTTGCAGGT 60.535 50.000 8.71 0.00 31.49 4.00
376 389 4.697352 GTGACATTTGCAGGTCATCTTACT 59.303 41.667 17.30 0.00 44.94 2.24
397 410 1.668751 TGACCGAAACTTCAGTGCAAC 59.331 47.619 0.00 0.00 0.00 4.17
414 434 1.595794 CAACTAACGTTGCCAAGTCGT 59.404 47.619 11.99 0.00 43.47 4.34
471 496 2.340328 GGCCTCCGCGGACAAAAAT 61.340 57.895 27.28 0.00 42.15 1.82
488 515 7.986889 GGACAAAAATAATGAAGGTGGCATATT 59.013 33.333 0.00 0.00 0.00 1.28
489 516 8.721019 ACAAAAATAATGAAGGTGGCATATTG 57.279 30.769 0.00 0.00 0.00 1.90
490 517 8.320617 ACAAAAATAATGAAGGTGGCATATTGT 58.679 29.630 0.00 0.00 0.00 2.71
492 519 6.409524 AATAATGAAGGTGGCATATTGTGG 57.590 37.500 0.00 0.00 0.00 4.17
501 532 1.029408 GCATATTGTGGCGGTGTCCA 61.029 55.000 0.00 0.00 0.00 4.02
612 649 6.000542 CACACAAAATTATAAAACAAGCGCG 58.999 36.000 0.00 0.00 0.00 6.86
613 650 5.117897 ACACAAAATTATAAAACAAGCGCGG 59.882 36.000 8.83 0.00 0.00 6.46
614 651 4.090786 ACAAAATTATAAAACAAGCGCGGC 59.909 37.500 8.83 0.00 0.00 6.53
615 652 2.099633 ATTATAAAACAAGCGCGGCG 57.900 45.000 19.62 19.62 0.00 6.46
616 653 0.097325 TTATAAAACAAGCGCGGCGG 59.903 50.000 25.03 10.11 0.00 6.13
617 654 1.707239 TATAAAACAAGCGCGGCGGG 61.707 55.000 25.03 20.45 0.00 6.13
638 675 2.687566 AGGGGCACTACCGGGAAG 60.688 66.667 6.32 5.31 40.62 3.46
687 724 2.001803 CTCCAATCCAGGGAGCCAA 58.998 57.895 0.00 0.00 44.95 4.52
688 725 0.106819 CTCCAATCCAGGGAGCCAAG 60.107 60.000 0.00 0.00 44.95 3.61
689 726 1.755783 CCAATCCAGGGAGCCAAGC 60.756 63.158 0.00 0.00 0.00 4.01
690 727 1.755783 CAATCCAGGGAGCCAAGCC 60.756 63.158 0.00 0.00 0.00 4.35
691 728 2.240918 AATCCAGGGAGCCAAGCCA 61.241 57.895 0.00 0.00 0.00 4.75
692 729 1.803453 AATCCAGGGAGCCAAGCCAA 61.803 55.000 0.00 0.00 0.00 4.52
693 730 2.505364 ATCCAGGGAGCCAAGCCAAC 62.505 60.000 0.00 0.00 0.00 3.77
694 731 2.677875 CAGGGAGCCAAGCCAACC 60.678 66.667 0.00 0.00 0.00 3.77
695 732 4.351054 AGGGAGCCAAGCCAACCG 62.351 66.667 0.00 0.00 0.00 4.44
827 900 2.170273 GCGCTGTTCGTTCGTTCC 59.830 61.111 0.00 0.00 41.07 3.62
835 908 0.665369 TTCGTTCGTTCCTTCGAGGC 60.665 55.000 0.00 0.00 40.86 4.70
927 1001 1.987855 CCGGTAGCCACCTTCTCCA 60.988 63.158 0.00 0.00 43.33 3.86
937 1012 2.581354 CTTCTCCAGGGGTCAGCG 59.419 66.667 0.00 0.00 0.00 5.18
966 1041 4.168291 GGGCAGGAGGAAGCGGAG 62.168 72.222 0.00 0.00 0.00 4.63
967 1042 3.077556 GGCAGGAGGAAGCGGAGA 61.078 66.667 0.00 0.00 0.00 3.71
1013 1096 1.610522 GGATTGGATGCAGGTATGTGC 59.389 52.381 0.00 0.00 44.27 4.57
1014 1097 1.610522 GATTGGATGCAGGTATGTGCC 59.389 52.381 0.00 0.00 43.28 5.01
1031 1114 2.202676 CGCTGAGTCGCCTTCTCC 60.203 66.667 2.16 0.00 0.00 3.71
1035 1118 0.738389 CTGAGTCGCCTTCTCCTCTC 59.262 60.000 0.00 0.00 0.00 3.20
1038 1121 0.395173 AGTCGCCTTCTCCTCTCCTC 60.395 60.000 0.00 0.00 0.00 3.71
1039 1122 1.076632 TCGCCTTCTCCTCTCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
1042 1125 1.456705 CCTTCTCCTCTCCTCCCGG 60.457 68.421 0.00 0.00 0.00 5.73
1043 1126 1.308326 CTTCTCCTCTCCTCCCGGT 59.692 63.158 0.00 0.00 0.00 5.28
1046 1129 1.755008 CTCCTCTCCTCCCGGTGAC 60.755 68.421 0.00 0.00 0.00 3.67
1061 1144 2.423577 GGTGACGAGCTATTTGGTTGT 58.576 47.619 0.00 0.00 42.92 3.32
1062 1145 2.812011 GGTGACGAGCTATTTGGTTGTT 59.188 45.455 0.00 0.00 40.56 2.83
1063 1146 3.252458 GGTGACGAGCTATTTGGTTGTTT 59.748 43.478 0.00 0.00 40.56 2.83
1068 1151 4.148891 CGAGCTATTTGGTTGTTTCGTTC 58.851 43.478 0.00 0.00 0.00 3.95
1098 1181 0.916086 AGGGTGGTGTCAACTGTCAA 59.084 50.000 0.00 0.00 0.00 3.18
1103 1187 1.230324 GGTGTCAACTGTCAAGCCTC 58.770 55.000 0.00 0.00 0.00 4.70
1107 1191 3.044305 AACTGTCAAGCCTCGCGC 61.044 61.111 0.00 0.00 37.98 6.86
1113 1197 4.093952 CAAGCCTCGCGCAGGTTG 62.094 66.667 21.68 20.27 45.61 3.77
1117 1201 3.114616 CCTCGCGCAGGTTGTCAG 61.115 66.667 8.75 0.00 37.53 3.51
1122 1206 1.577328 CGCGCAGGTTGTCAGGAAAT 61.577 55.000 8.75 0.00 0.00 2.17
1125 1209 2.227865 GCGCAGGTTGTCAGGAAATAAA 59.772 45.455 0.30 0.00 0.00 1.40
1126 1210 3.119495 GCGCAGGTTGTCAGGAAATAAAT 60.119 43.478 0.30 0.00 0.00 1.40
1127 1211 4.618227 GCGCAGGTTGTCAGGAAATAAATT 60.618 41.667 0.30 0.00 0.00 1.82
1128 1212 5.392595 GCGCAGGTTGTCAGGAAATAAATTA 60.393 40.000 0.30 0.00 0.00 1.40
1129 1213 6.027749 CGCAGGTTGTCAGGAAATAAATTAC 58.972 40.000 0.00 0.00 0.00 1.89
1131 1215 6.128117 GCAGGTTGTCAGGAAATAAATTACGA 60.128 38.462 0.00 0.00 0.00 3.43
1135 1222 8.455682 GGTTGTCAGGAAATAAATTACGATTCA 58.544 33.333 0.00 0.00 0.00 2.57
1149 1236 4.488126 ACGATTCATGTGTTGTTCTTGG 57.512 40.909 0.00 0.00 0.00 3.61
1155 1242 5.119931 TCATGTGTTGTTCTTGGTTATGC 57.880 39.130 0.00 0.00 0.00 3.14
1156 1243 4.022416 TCATGTGTTGTTCTTGGTTATGCC 60.022 41.667 0.00 0.00 37.90 4.40
1158 1245 2.625790 GTGTTGTTCTTGGTTATGCCCA 59.374 45.455 0.00 0.00 36.04 5.36
1160 1247 3.257873 TGTTGTTCTTGGTTATGCCCATG 59.742 43.478 0.00 0.00 33.60 3.66
1164 1251 1.824230 TCTTGGTTATGCCCATGTTGC 59.176 47.619 0.00 0.00 33.60 4.17
1167 1254 0.530288 GGTTATGCCCATGTTGCGTT 59.470 50.000 4.70 0.00 0.00 4.84
1177 1265 1.064505 CATGTTGCGTTGGGATGCTAG 59.935 52.381 0.00 0.00 38.64 3.42
1186 1274 1.207488 TGGGATGCTAGGCCTTGTGT 61.207 55.000 12.58 1.15 0.00 3.72
1194 1282 0.984230 TAGGCCTTGTGTGAGGGAAG 59.016 55.000 12.58 0.00 37.29 3.46
1195 1283 0.768221 AGGCCTTGTGTGAGGGAAGA 60.768 55.000 0.00 0.00 37.29 2.87
1196 1284 0.329596 GGCCTTGTGTGAGGGAAGAT 59.670 55.000 0.00 0.00 37.29 2.40
1213 1301 7.462590 AGGGAAGATAATCATAGGGTTTTAGC 58.537 38.462 0.00 0.00 0.00 3.09
1214 1302 7.295911 AGGGAAGATAATCATAGGGTTTTAGCT 59.704 37.037 0.00 0.00 0.00 3.32
1215 1303 7.608376 GGGAAGATAATCATAGGGTTTTAGCTC 59.392 40.741 0.00 0.00 0.00 4.09
1216 1304 8.379331 GGAAGATAATCATAGGGTTTTAGCTCT 58.621 37.037 0.00 0.00 0.00 4.09
1220 1308 9.606631 GATAATCATAGGGTTTTAGCTCTATGG 57.393 37.037 14.51 1.70 39.41 2.74
1221 1309 7.633018 AATCATAGGGTTTTAGCTCTATGGA 57.367 36.000 14.51 5.70 39.41 3.41
1222 1310 6.420913 TCATAGGGTTTTAGCTCTATGGAC 57.579 41.667 14.51 0.00 39.41 4.02
1223 1311 6.143915 TCATAGGGTTTTAGCTCTATGGACT 58.856 40.000 14.51 0.51 39.41 3.85
1224 1312 7.302948 TCATAGGGTTTTAGCTCTATGGACTA 58.697 38.462 14.51 2.41 39.41 2.59
1225 1313 5.873146 AGGGTTTTAGCTCTATGGACTAC 57.127 43.478 0.00 0.00 0.00 2.73
1226 1314 5.278061 AGGGTTTTAGCTCTATGGACTACA 58.722 41.667 0.00 0.00 0.00 2.74
1227 1315 5.128991 AGGGTTTTAGCTCTATGGACTACAC 59.871 44.000 0.00 0.00 0.00 2.90
1228 1316 5.128991 GGGTTTTAGCTCTATGGACTACACT 59.871 44.000 0.00 0.00 0.00 3.55
1229 1317 6.351966 GGGTTTTAGCTCTATGGACTACACTT 60.352 42.308 0.00 0.00 0.00 3.16
1230 1318 6.535508 GGTTTTAGCTCTATGGACTACACTTG 59.464 42.308 0.00 0.00 0.00 3.16
1231 1319 5.854010 TTAGCTCTATGGACTACACTTGG 57.146 43.478 0.00 0.00 0.00 3.61
1237 1325 1.373812 GGACTACACTTGGGCGGTT 59.626 57.895 0.00 0.00 0.00 4.44
1255 1343 2.807392 GGTTTTGTGTGGATTTGGCATG 59.193 45.455 0.00 0.00 0.00 4.06
1256 1344 3.494048 GGTTTTGTGTGGATTTGGCATGA 60.494 43.478 0.00 0.00 0.00 3.07
1257 1345 3.383620 TTTGTGTGGATTTGGCATGAC 57.616 42.857 0.00 0.00 0.00 3.06
1258 1346 0.880441 TGTGTGGATTTGGCATGACG 59.120 50.000 0.00 0.00 0.00 4.35
1259 1347 0.171007 GTGTGGATTTGGCATGACGG 59.829 55.000 0.00 0.00 0.00 4.79
1260 1348 0.037447 TGTGGATTTGGCATGACGGA 59.963 50.000 0.00 0.00 0.00 4.69
1263 1351 1.004161 TGGATTTGGCATGACGGAGAA 59.996 47.619 0.00 0.00 0.00 2.87
1272 1360 2.017049 CATGACGGAGAATGGGGAAAC 58.983 52.381 0.00 0.00 0.00 2.78
1274 1362 0.743345 GACGGAGAATGGGGAAACGG 60.743 60.000 0.00 0.00 0.00 4.44
1316 1404 1.139163 CAAACGGGCAATTCAACTGC 58.861 50.000 0.00 0.00 39.16 4.40
1334 1422 3.073650 ACTGCCATTCACTTCTTCTTCCT 59.926 43.478 0.00 0.00 0.00 3.36
1335 1423 3.679389 TGCCATTCACTTCTTCTTCCTC 58.321 45.455 0.00 0.00 0.00 3.71
1336 1424 3.013219 GCCATTCACTTCTTCTTCCTCC 58.987 50.000 0.00 0.00 0.00 4.30
1341 1429 3.327439 TCACTTCTTCTTCCTCCCCTTT 58.673 45.455 0.00 0.00 0.00 3.11
1342 1430 3.073062 TCACTTCTTCTTCCTCCCCTTTG 59.927 47.826 0.00 0.00 0.00 2.77
1356 1444 1.794512 CCTTTGGGGCATTTTTCGTG 58.205 50.000 0.00 0.00 0.00 4.35
1365 1453 4.306600 GGGCATTTTTCGTGTTCTTTCAT 58.693 39.130 0.00 0.00 0.00 2.57
1366 1454 4.749598 GGGCATTTTTCGTGTTCTTTCATT 59.250 37.500 0.00 0.00 0.00 2.57
1367 1455 5.923684 GGGCATTTTTCGTGTTCTTTCATTA 59.076 36.000 0.00 0.00 0.00 1.90
1368 1456 6.128929 GGGCATTTTTCGTGTTCTTTCATTAC 60.129 38.462 0.00 0.00 0.00 1.89
1369 1457 6.419413 GGCATTTTTCGTGTTCTTTCATTACA 59.581 34.615 0.00 0.00 0.00 2.41
1370 1458 7.358352 GGCATTTTTCGTGTTCTTTCATTACAG 60.358 37.037 0.00 0.00 0.00 2.74
1372 1460 5.682943 TTTCGTGTTCTTTCATTACAGGG 57.317 39.130 0.00 0.00 0.00 4.45
1373 1461 4.610605 TCGTGTTCTTTCATTACAGGGA 57.389 40.909 0.00 0.00 0.00 4.20
1374 1462 4.566004 TCGTGTTCTTTCATTACAGGGAG 58.434 43.478 0.00 0.00 0.00 4.30
1375 1463 4.039973 TCGTGTTCTTTCATTACAGGGAGT 59.960 41.667 0.00 0.00 0.00 3.85
1376 1464 5.244402 TCGTGTTCTTTCATTACAGGGAGTA 59.756 40.000 0.00 0.00 0.00 2.59
1377 1465 5.577164 CGTGTTCTTTCATTACAGGGAGTAG 59.423 44.000 0.00 0.00 33.43 2.57
1378 1466 5.875359 GTGTTCTTTCATTACAGGGAGTAGG 59.125 44.000 0.00 0.00 33.43 3.18
1379 1467 4.755266 TCTTTCATTACAGGGAGTAGGC 57.245 45.455 0.00 0.00 33.43 3.93
1380 1468 3.132289 TCTTTCATTACAGGGAGTAGGCG 59.868 47.826 0.00 0.00 33.43 5.52
1404 1492 2.635443 CCAGCGCGTTCCCCATTTT 61.635 57.895 8.43 0.00 0.00 1.82
1407 1495 1.154035 GCGCGTTCCCCATTTTCAG 60.154 57.895 8.43 0.00 0.00 3.02
1408 1496 1.154035 CGCGTTCCCCATTTTCAGC 60.154 57.895 0.00 0.00 0.00 4.26
1410 1498 1.506262 CGTTCCCCATTTTCAGCCG 59.494 57.895 0.00 0.00 0.00 5.52
1415 1503 1.137404 CCCATTTTCAGCCGCTTCG 59.863 57.895 0.00 0.00 0.00 3.79
1430 1518 3.364023 CCGCTTCGTAGTACAAGTCTTTG 59.636 47.826 0.38 0.00 40.24 2.77
1437 1525 5.929992 TCGTAGTACAAGTCTTTGATTTGGG 59.070 40.000 0.38 0.00 37.73 4.12
1438 1526 5.390567 CGTAGTACAAGTCTTTGATTTGGGC 60.391 44.000 0.38 1.24 37.73 5.36
1439 1527 4.729868 AGTACAAGTCTTTGATTTGGGCT 58.270 39.130 0.00 3.05 37.73 5.19
1440 1528 4.520492 AGTACAAGTCTTTGATTTGGGCTG 59.480 41.667 0.00 0.00 37.73 4.85
1441 1529 3.299503 ACAAGTCTTTGATTTGGGCTGT 58.700 40.909 7.51 0.00 37.73 4.40
1442 1530 3.706086 ACAAGTCTTTGATTTGGGCTGTT 59.294 39.130 7.51 0.00 37.73 3.16
1443 1531 4.162131 ACAAGTCTTTGATTTGGGCTGTTT 59.838 37.500 7.51 0.00 37.73 2.83
1444 1532 5.362430 ACAAGTCTTTGATTTGGGCTGTTTA 59.638 36.000 7.51 0.00 37.73 2.01
1445 1533 6.041979 ACAAGTCTTTGATTTGGGCTGTTTAT 59.958 34.615 7.51 0.00 37.73 1.40
1446 1534 6.670695 AGTCTTTGATTTGGGCTGTTTATT 57.329 33.333 0.00 0.00 0.00 1.40
1447 1535 6.458210 AGTCTTTGATTTGGGCTGTTTATTG 58.542 36.000 0.00 0.00 0.00 1.90
1448 1536 6.041979 AGTCTTTGATTTGGGCTGTTTATTGT 59.958 34.615 0.00 0.00 0.00 2.71
1449 1537 6.705825 GTCTTTGATTTGGGCTGTTTATTGTT 59.294 34.615 0.00 0.00 0.00 2.83
1452 1540 7.489574 TTGATTTGGGCTGTTTATTGTTTTC 57.510 32.000 0.00 0.00 0.00 2.29
1461 1549 7.071414 GGCTGTTTATTGTTTTCATTTTCAGC 58.929 34.615 0.00 0.00 41.37 4.26
1466 1554 9.986833 GTTTATTGTTTTCATTTTCAGCAAAGT 57.013 25.926 0.00 0.00 0.00 2.66
1475 1563 8.592105 TTCATTTTCAGCAAAGTAAATTCCAG 57.408 30.769 0.00 0.00 0.00 3.86
1499 1590 6.976925 AGTTCTTATTCGTTCATACTTACGGG 59.023 38.462 0.00 0.00 38.26 5.28
1500 1591 6.698008 TCTTATTCGTTCATACTTACGGGA 57.302 37.500 0.00 0.00 38.26 5.14
1517 1608 2.168521 CGGGAGAGATGCCACTTTCTTA 59.831 50.000 0.00 0.00 0.00 2.10
1536 1627 9.753669 CTTTCTTAAAACCATTTTGTCAACAAC 57.246 29.630 0.00 0.00 35.28 3.32
1538 1629 6.819146 TCTTAAAACCATTTTGTCAACAACCC 59.181 34.615 0.00 0.00 35.28 4.11
1580 1671 0.801251 CCCGTATCGTATCCTCCGAC 59.199 60.000 0.00 0.00 37.12 4.79
1605 1696 2.159014 TGTAGAATCAATTCCCCCGTCG 60.159 50.000 0.00 0.00 37.51 5.12
1661 1754 6.961554 GTCGGTTCATTCTTTATAGTTTGCTG 59.038 38.462 0.00 0.00 0.00 4.41
1662 1755 6.093495 TCGGTTCATTCTTTATAGTTTGCTGG 59.907 38.462 0.00 0.00 0.00 4.85
1663 1756 6.128007 CGGTTCATTCTTTATAGTTTGCTGGT 60.128 38.462 0.00 0.00 0.00 4.00
1664 1757 7.029563 GGTTCATTCTTTATAGTTTGCTGGTG 58.970 38.462 0.00 0.00 0.00 4.17
1665 1758 7.094377 GGTTCATTCTTTATAGTTTGCTGGTGA 60.094 37.037 0.00 0.00 0.00 4.02
1666 1759 7.377766 TCATTCTTTATAGTTTGCTGGTGAC 57.622 36.000 0.00 0.00 0.00 3.67
1667 1760 6.374333 TCATTCTTTATAGTTTGCTGGTGACC 59.626 38.462 0.00 0.00 0.00 4.02
1668 1761 5.499004 TCTTTATAGTTTGCTGGTGACCT 57.501 39.130 2.11 0.00 0.00 3.85
1705 1798 6.267242 TCAACCATCATTTTCCATGAGAACAA 59.733 34.615 0.00 0.00 32.95 2.83
1713 1806 1.697432 TCCATGAGAACAACCCGTCTT 59.303 47.619 0.00 0.00 0.00 3.01
1715 1808 3.325425 TCCATGAGAACAACCCGTCTTTA 59.675 43.478 0.00 0.00 0.00 1.85
1720 1813 5.127491 TGAGAACAACCCGTCTTTATTTGT 58.873 37.500 0.00 0.00 31.74 2.83
1742 1835 0.036199 TTGGATGCATTTGCTTGGGC 60.036 50.000 0.00 0.00 42.66 5.36
1750 1843 4.577677 TTGCTTGGGCGCCTGACA 62.578 61.111 28.56 13.75 42.25 3.58
1758 1851 0.177141 GGGCGCCTGACATGTACTTA 59.823 55.000 28.56 0.00 0.00 2.24
1823 1917 1.342819 GAGTCCATAGCGGCAATCTCT 59.657 52.381 1.45 0.00 33.14 3.10
1850 1944 3.390521 TCGACAATGGCCTCCGCT 61.391 61.111 3.32 0.00 34.44 5.52
1853 1947 2.045926 ACAATGGCCTCCGCTGAC 60.046 61.111 3.32 0.00 34.44 3.51
1885 1979 0.465460 AAGTTCTTGGACGCAGGCAA 60.465 50.000 0.00 0.00 0.00 4.52
1931 2025 0.038744 CATTGGAGGTGCAGAGGGTT 59.961 55.000 0.00 0.00 0.00 4.11
1940 2034 2.290577 GGTGCAGAGGGTTCAGAATTCT 60.291 50.000 0.88 0.88 0.00 2.40
1944 2038 1.834263 AGAGGGTTCAGAATTCTCCGG 59.166 52.381 4.57 0.00 0.00 5.14
1973 2067 2.134201 TGCACGTAGCCGAATATCTG 57.866 50.000 7.38 0.00 44.83 2.90
2010 2104 2.182030 CCAAGGACCTCGTCGCTC 59.818 66.667 0.00 0.00 32.65 5.03
2138 2232 2.872370 GCTTCAGCATTTGGTAGCAAG 58.128 47.619 7.51 0.00 41.59 4.01
2342 2436 4.102210 CAGGGAATGTACCATGAGTCTCAT 59.898 45.833 9.68 9.68 43.28 2.90
2354 2448 2.831526 TGAGTCTCATGAATTCGGTGGA 59.168 45.455 0.00 4.95 0.00 4.02
2390 2484 1.133407 CTCCCTGAAGTCGCAGAGTAC 59.867 57.143 0.00 0.00 40.67 2.73
2400 2494 1.080705 GCAGAGTACGTTGAGCCGT 60.081 57.895 0.00 0.00 44.50 5.68
2426 2520 3.415212 TGATTCTTTCTTCTGCCCACTG 58.585 45.455 0.00 0.00 0.00 3.66
2469 2563 1.629043 AGTGACTACTGAAAGCGGGA 58.371 50.000 0.00 0.00 37.60 5.14
2735 2829 2.581354 CTTGCCAGGACGAGGAGG 59.419 66.667 0.00 0.00 0.00 4.30
2885 2979 6.150140 CAGGAAAGGTAAGGAAGTCTGAAATG 59.850 42.308 0.00 0.00 0.00 2.32
2886 2980 6.004574 GGAAAGGTAAGGAAGTCTGAAATGT 58.995 40.000 0.00 0.00 0.00 2.71
3044 3143 1.872952 CTCAAATGTTGCCTCGTGACA 59.127 47.619 0.00 0.00 0.00 3.58
3169 3268 9.862371 CTAGAGCTTTCAAAATCAGAGTTACTA 57.138 33.333 0.00 0.00 0.00 1.82
3185 3284 7.438459 CAGAGTTACTATTAGAAAACATCGGGG 59.562 40.741 12.76 0.00 0.00 5.73
3235 3334 6.204495 TGATCACGATGAAATTCAACAACTCA 59.796 34.615 0.00 0.00 0.00 3.41
3244 3343 6.716173 TGAAATTCAACAACTCAGATGATCCA 59.284 34.615 0.00 0.00 0.00 3.41
3395 3494 2.744202 CTGTGCAGAAACATACCTGACC 59.256 50.000 0.00 0.00 32.37 4.02
3400 3499 3.451178 GCAGAAACATACCTGACCTCCTA 59.549 47.826 0.00 0.00 32.37 2.94
3403 3502 5.129485 CAGAAACATACCTGACCTCCTACAT 59.871 44.000 0.00 0.00 32.37 2.29
3404 3503 5.726793 AGAAACATACCTGACCTCCTACATT 59.273 40.000 0.00 0.00 0.00 2.71
3437 3536 9.533253 AACTCTTCCACATAAAACATTGAAAAG 57.467 29.630 0.00 0.00 0.00 2.27
3440 3539 7.867403 TCTTCCACATAAAACATTGAAAAGAGC 59.133 33.333 0.00 0.00 0.00 4.09
3441 3540 7.048629 TCCACATAAAACATTGAAAAGAGCA 57.951 32.000 0.00 0.00 0.00 4.26
3442 3541 7.495901 TCCACATAAAACATTGAAAAGAGCAA 58.504 30.769 0.00 0.00 0.00 3.91
3454 3553 7.524294 TTGAAAAGAGCAATTTTGTCTTGTC 57.476 32.000 13.32 13.32 35.49 3.18
3503 3608 3.149196 TCTGAGAACATTTCCCTTGCAC 58.851 45.455 0.00 0.00 0.00 4.57
3505 3610 2.886523 TGAGAACATTTCCCTTGCACTG 59.113 45.455 0.00 0.00 0.00 3.66
3513 3618 5.954150 ACATTTCCCTTGCACTGATAAGAAT 59.046 36.000 0.00 0.00 0.00 2.40
3516 3621 5.957771 TCCCTTGCACTGATAAGAATAGT 57.042 39.130 0.00 0.00 0.00 2.12
3518 3623 6.115446 TCCCTTGCACTGATAAGAATAGTTG 58.885 40.000 0.00 0.00 0.00 3.16
3520 3625 5.220931 CCTTGCACTGATAAGAATAGTTGCC 60.221 44.000 0.00 0.00 0.00 4.52
3521 3626 4.842574 TGCACTGATAAGAATAGTTGCCA 58.157 39.130 0.00 0.00 0.00 4.92
3522 3627 5.439721 TGCACTGATAAGAATAGTTGCCAT 58.560 37.500 0.00 0.00 0.00 4.40
3523 3628 5.887598 TGCACTGATAAGAATAGTTGCCATT 59.112 36.000 0.00 0.00 0.00 3.16
3524 3629 6.377996 TGCACTGATAAGAATAGTTGCCATTT 59.622 34.615 0.00 0.00 0.00 2.32
3525 3630 7.093814 TGCACTGATAAGAATAGTTGCCATTTT 60.094 33.333 0.00 0.00 0.00 1.82
3526 3631 7.221452 GCACTGATAAGAATAGTTGCCATTTTG 59.779 37.037 0.00 0.00 0.00 2.44
3527 3632 8.246180 CACTGATAAGAATAGTTGCCATTTTGT 58.754 33.333 0.00 0.00 0.00 2.83
3528 3633 8.462016 ACTGATAAGAATAGTTGCCATTTTGTC 58.538 33.333 0.00 0.00 0.00 3.18
3529 3634 7.771183 TGATAAGAATAGTTGCCATTTTGTCC 58.229 34.615 0.00 0.00 0.00 4.02
3530 3635 7.395772 TGATAAGAATAGTTGCCATTTTGTCCA 59.604 33.333 0.00 0.00 0.00 4.02
3531 3636 6.418057 AAGAATAGTTGCCATTTTGTCCAA 57.582 33.333 0.00 0.00 0.00 3.53
3532 3637 6.418057 AGAATAGTTGCCATTTTGTCCAAA 57.582 33.333 0.00 0.00 0.00 3.28
3533 3638 6.223120 AGAATAGTTGCCATTTTGTCCAAAC 58.777 36.000 0.00 0.00 0.00 2.93
3534 3639 3.902881 AGTTGCCATTTTGTCCAAACA 57.097 38.095 0.00 0.00 0.00 2.83
3535 3640 3.530535 AGTTGCCATTTTGTCCAAACAC 58.469 40.909 0.00 0.00 34.35 3.32
3536 3641 3.197549 AGTTGCCATTTTGTCCAAACACT 59.802 39.130 0.00 0.00 34.35 3.55
3537 3642 3.902881 TGCCATTTTGTCCAAACACTT 57.097 38.095 0.00 0.00 34.35 3.16
3538 3643 4.213564 TGCCATTTTGTCCAAACACTTT 57.786 36.364 0.00 0.00 34.35 2.66
3539 3644 4.187694 TGCCATTTTGTCCAAACACTTTC 58.812 39.130 0.00 0.00 34.35 2.62
3540 3645 4.081198 TGCCATTTTGTCCAAACACTTTCT 60.081 37.500 0.00 0.00 34.35 2.52
3541 3646 5.127845 TGCCATTTTGTCCAAACACTTTCTA 59.872 36.000 0.00 0.00 34.35 2.10
3542 3647 6.045955 GCCATTTTGTCCAAACACTTTCTAA 58.954 36.000 0.00 0.00 34.35 2.10
3543 3648 6.536941 GCCATTTTGTCCAAACACTTTCTAAA 59.463 34.615 0.00 0.00 34.35 1.85
3544 3649 7.465379 GCCATTTTGTCCAAACACTTTCTAAAC 60.465 37.037 0.00 0.00 34.35 2.01
3545 3650 7.763985 CCATTTTGTCCAAACACTTTCTAAACT 59.236 33.333 0.00 0.00 34.35 2.66
3546 3651 9.796120 CATTTTGTCCAAACACTTTCTAAACTA 57.204 29.630 0.00 0.00 34.35 2.24
3558 3663 7.284489 ACACTTTCTAAACTAGCATTTTGTCCA 59.716 33.333 0.00 0.00 0.00 4.02
3563 3668 7.648142 TCTAAACTAGCATTTTGTCCAAACAG 58.352 34.615 0.00 0.00 36.57 3.16
3572 3677 7.277760 AGCATTTTGTCCAAACAGTTTCTAAAC 59.722 33.333 0.00 0.00 36.57 2.01
3579 3684 9.052759 TGTCCAAACAGTTTCTAAACTAGAATC 57.947 33.333 7.73 0.00 46.89 2.52
3600 5938 7.449086 AGAATCACTATAGTAGGAGTTACTGCC 59.551 40.741 4.74 0.00 42.57 4.85
3601 5939 6.263412 TCACTATAGTAGGAGTTACTGCCT 57.737 41.667 4.74 4.60 42.57 4.75
3609 5947 5.958987 AGTAGGAGTTACTGCCTATGTTTCT 59.041 40.000 11.64 4.22 41.10 2.52
3611 5949 6.869206 AGGAGTTACTGCCTATGTTTCTAA 57.131 37.500 0.00 0.00 31.31 2.10
3613 5951 7.104290 AGGAGTTACTGCCTATGTTTCTAAAC 58.896 38.462 0.00 0.00 34.54 2.01
3657 6001 7.319646 TGTTTTGCAACAAGTGAACTAAATCT 58.680 30.769 0.00 0.00 40.10 2.40
3658 6002 7.487829 TGTTTTGCAACAAGTGAACTAAATCTC 59.512 33.333 0.00 0.00 40.10 2.75
3659 6003 5.342806 TGCAACAAGTGAACTAAATCTCG 57.657 39.130 0.00 0.00 0.00 4.04
3668 6012 5.866633 AGTGAACTAAATCTCGAGCTCAAAG 59.133 40.000 15.40 10.56 0.00 2.77
3674 6018 7.254852 ACTAAATCTCGAGCTCAAAGTAGAAG 58.745 38.462 15.40 9.65 0.00 2.85
3735 6096 8.487313 AAAAACTCGATACTATGCATTGTACA 57.513 30.769 20.77 4.81 0.00 2.90
3768 6129 1.647545 CCGCTCGTGCCAAACATCAT 61.648 55.000 3.52 0.00 35.36 2.45
3899 6260 1.413382 GAGCGCATCGGAGATACTTG 58.587 55.000 11.47 0.00 45.12 3.16
3964 6325 2.424956 GCTTGATGTCCTGGTCCAAATC 59.575 50.000 0.00 0.00 0.00 2.17
3982 6343 1.661463 TCTCTTCTCACCAGCCCAAT 58.339 50.000 0.00 0.00 0.00 3.16
4039 6400 0.036732 TGGTTGAGGCGCTCTTCATT 59.963 50.000 7.64 0.00 0.00 2.57
4162 6523 4.253685 ACAAGGAAGGTCATGTTATCACG 58.746 43.478 0.00 0.00 0.00 4.35
4240 6601 2.948979 TCTCAACCTCAACATTTTGCGT 59.051 40.909 0.00 0.00 32.17 5.24
4270 6631 4.697756 CTCACCGCGCTCCCCAAA 62.698 66.667 5.56 0.00 0.00 3.28
4426 6787 0.674895 ACACCATTGCCGAGAAGCTC 60.675 55.000 0.00 0.00 0.00 4.09
4614 6975 2.367894 CCAAGATAGAGGAGATGCAGCA 59.632 50.000 4.07 0.00 0.00 4.41
4750 7111 2.002586 CATAACTTCACCTCGGTGCTG 58.997 52.381 11.21 8.53 45.04 4.41
5053 7414 2.490115 CCTAGAGAGCAACGAGAACAGT 59.510 50.000 0.00 0.00 0.00 3.55
5260 7621 2.987547 TTCCTCGAGAACGGCGGT 60.988 61.111 15.71 3.35 40.21 5.68
5281 7642 4.436998 CGGTGCGTCAGGGAGGTC 62.437 72.222 0.00 0.00 0.00 3.85
5567 7946 7.490657 AACTAAAGTGTCATAGTGGGTATGA 57.509 36.000 0.00 0.00 44.52 2.15
5603 7985 5.667466 TCGTTCTTGTTTGTCTTCTTAGGT 58.333 37.500 0.00 0.00 0.00 3.08
5723 8105 7.087409 TGTATCCAGAGCAAAATTGTATGTG 57.913 36.000 0.00 0.00 0.00 3.21
5746 8128 5.048504 TGGTTGCAGAACTCATTTGAGATTC 60.049 40.000 14.29 12.65 44.74 2.52
5748 8130 5.874895 TGCAGAACTCATTTGAGATTCAG 57.125 39.130 14.29 11.02 44.74 3.02
5810 8207 7.960793 ACTACGTAGTTCAACATGCTAAATTC 58.039 34.615 22.45 0.00 37.78 2.17
5833 8230 6.098679 TCTGTAGTTCTACTCGACTGACTAC 58.901 44.000 10.65 0.00 0.00 2.73
5869 8266 3.303725 CCTTGAGCAAATTCGTCGAAACA 60.304 43.478 12.40 3.52 0.00 2.83
5875 8272 5.519722 AGCAAATTCGTCGAAACAAGATTT 58.480 33.333 12.40 4.06 0.00 2.17
5886 8283 6.253512 GTCGAAACAAGATTTGCAGTTTCTTT 59.746 34.615 18.92 2.97 44.55 2.52
5887 8284 6.253298 TCGAAACAAGATTTGCAGTTTCTTTG 59.747 34.615 18.92 9.56 44.55 2.77
5890 8287 8.496707 AAACAAGATTTGCAGTTTCTTTGATT 57.503 26.923 5.43 0.00 28.81 2.57
5895 8292 8.953368 AGATTTGCAGTTTCTTTGATTCTTTT 57.047 26.923 0.00 0.00 0.00 2.27
5896 8293 8.823818 AGATTTGCAGTTTCTTTGATTCTTTTG 58.176 29.630 0.00 0.00 0.00 2.44
5899 8296 6.629128 TGCAGTTTCTTTGATTCTTTTGTCA 58.371 32.000 0.00 0.00 0.00 3.58
5937 8334 4.053469 TGAGGCGATCACGATGAAAATA 57.947 40.909 0.00 0.00 42.66 1.40
6023 8421 4.666176 CACATAATCACGCGCTGAAAATAC 59.334 41.667 5.73 0.00 30.60 1.89
6024 8422 4.331443 ACATAATCACGCGCTGAAAATACA 59.669 37.500 5.73 0.00 30.60 2.29
6026 8424 1.790755 TCACGCGCTGAAAATACACT 58.209 45.000 5.73 0.00 0.00 3.55
6028 8426 1.459209 CACGCGCTGAAAATACACTCA 59.541 47.619 5.73 0.00 0.00 3.41
6030 8428 3.305897 CACGCGCTGAAAATACACTCATA 59.694 43.478 5.73 0.00 0.00 2.15
6031 8429 3.930229 ACGCGCTGAAAATACACTCATAA 59.070 39.130 5.73 0.00 0.00 1.90
6105 8515 5.355350 GCAGCCATAGAAGTACAACAAAGAT 59.645 40.000 0.00 0.00 0.00 2.40
6123 8537 6.201806 ACAAAGATTCTTCTTTCACTCTCACG 59.798 38.462 0.00 0.00 46.88 4.35
6142 8556 6.805271 TCTCACGATACTAGCAACTAACAAAC 59.195 38.462 0.00 0.00 0.00 2.93
6144 8558 5.636121 CACGATACTAGCAACTAACAAACCA 59.364 40.000 0.00 0.00 0.00 3.67
6182 8596 1.291184 CGCGGAGTGTGAATCTTGCA 61.291 55.000 0.00 0.00 0.00 4.08
6237 8651 5.773091 TGAACTAGATGGTACCCAGATACA 58.227 41.667 10.07 0.00 36.75 2.29
6331 8748 9.280174 ACGTAAATTTTCAGAGGAGAATGTAAA 57.720 29.630 0.00 0.00 29.11 2.01
6360 8777 2.184322 CCATGTGGACGTCCCGAG 59.816 66.667 31.19 17.63 37.93 4.63
6361 8778 2.348104 CCATGTGGACGTCCCGAGA 61.348 63.158 31.19 13.23 37.93 4.04
6390 8807 1.915489 TCCAGCTTCCTCCAATAGCAA 59.085 47.619 0.00 0.00 37.37 3.91
6395 8812 3.026694 GCTTCCTCCAATAGCAAATGGT 58.973 45.455 0.00 0.00 37.94 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.151221 CGGGCATTGATGATCCCCA 59.849 57.895 5.52 0.00 35.40 4.96
45 46 2.670934 GGATAGCATGGCAGCGGG 60.671 66.667 0.00 0.00 40.15 6.13
90 91 2.810852 CGCTTCCTTCTTTCTGCTCTTT 59.189 45.455 0.00 0.00 0.00 2.52
91 92 2.224402 ACGCTTCCTTCTTTCTGCTCTT 60.224 45.455 0.00 0.00 0.00 2.85
199 205 1.961277 CAGACGGTGGTGGTGAAGC 60.961 63.158 0.00 0.00 0.00 3.86
200 206 0.105964 TTCAGACGGTGGTGGTGAAG 59.894 55.000 0.00 0.00 0.00 3.02
201 207 0.542333 TTTCAGACGGTGGTGGTGAA 59.458 50.000 0.00 0.00 0.00 3.18
202 208 0.762418 ATTTCAGACGGTGGTGGTGA 59.238 50.000 0.00 0.00 0.00 4.02
203 209 2.346803 CTATTTCAGACGGTGGTGGTG 58.653 52.381 0.00 0.00 0.00 4.17
204 210 1.278127 CCTATTTCAGACGGTGGTGGT 59.722 52.381 0.00 0.00 0.00 4.16
211 217 4.511826 GCAGAATTACCCTATTTCAGACGG 59.488 45.833 0.00 0.00 0.00 4.79
213 219 5.357257 TCGCAGAATTACCCTATTTCAGAC 58.643 41.667 0.00 0.00 0.00 3.51
234 243 5.950580 TGTTTTCTTTTCTACGTACGTTCG 58.049 37.500 27.92 17.66 0.00 3.95
239 248 7.642586 ACTTTGCATGTTTTCTTTTCTACGTAC 59.357 33.333 0.00 0.00 0.00 3.67
245 254 6.878389 TGGAAACTTTGCATGTTTTCTTTTCT 59.122 30.769 18.75 0.00 37.70 2.52
275 285 8.578308 TTGAATTGTTGATGATCAAAGACAAC 57.422 30.769 9.78 20.76 38.22 3.32
283 293 7.603404 GGGTCATTTTTGAATTGTTGATGATCA 59.397 33.333 0.00 0.00 0.00 2.92
284 294 7.820872 AGGGTCATTTTTGAATTGTTGATGATC 59.179 33.333 0.00 0.00 0.00 2.92
285 295 7.604927 CAGGGTCATTTTTGAATTGTTGATGAT 59.395 33.333 0.00 0.00 0.00 2.45
286 296 6.930164 CAGGGTCATTTTTGAATTGTTGATGA 59.070 34.615 0.00 0.00 0.00 2.92
287 297 6.148150 CCAGGGTCATTTTTGAATTGTTGATG 59.852 38.462 0.00 0.00 0.00 3.07
288 298 6.232692 CCAGGGTCATTTTTGAATTGTTGAT 58.767 36.000 0.00 0.00 0.00 2.57
289 299 5.609423 CCAGGGTCATTTTTGAATTGTTGA 58.391 37.500 0.00 0.00 0.00 3.18
290 300 4.213906 GCCAGGGTCATTTTTGAATTGTTG 59.786 41.667 0.00 0.00 0.00 3.33
291 301 4.388485 GCCAGGGTCATTTTTGAATTGTT 58.612 39.130 0.00 0.00 0.00 2.83
292 302 3.554752 CGCCAGGGTCATTTTTGAATTGT 60.555 43.478 0.00 0.00 0.00 2.71
293 303 2.995258 CGCCAGGGTCATTTTTGAATTG 59.005 45.455 0.00 0.00 0.00 2.32
296 306 1.988293 TCGCCAGGGTCATTTTTGAA 58.012 45.000 0.00 0.00 0.00 2.69
299 309 3.192633 GTGTATTCGCCAGGGTCATTTTT 59.807 43.478 0.00 0.00 0.00 1.94
301 311 2.290641 TGTGTATTCGCCAGGGTCATTT 60.291 45.455 0.00 0.00 0.00 2.32
302 312 1.280710 TGTGTATTCGCCAGGGTCATT 59.719 47.619 0.00 0.00 0.00 2.57
303 313 0.908910 TGTGTATTCGCCAGGGTCAT 59.091 50.000 0.00 0.00 0.00 3.06
304 314 0.908910 ATGTGTATTCGCCAGGGTCA 59.091 50.000 0.00 0.00 0.00 4.02
305 315 2.038387 AATGTGTATTCGCCAGGGTC 57.962 50.000 0.00 0.00 0.00 4.46
306 316 2.091541 CAAATGTGTATTCGCCAGGGT 58.908 47.619 0.00 0.00 0.00 4.34
307 317 1.202290 GCAAATGTGTATTCGCCAGGG 60.202 52.381 0.00 0.00 0.00 4.45
308 318 1.472082 TGCAAATGTGTATTCGCCAGG 59.528 47.619 0.00 0.00 0.00 4.45
313 323 1.472082 TGCCCTGCAAATGTGTATTCG 59.528 47.619 0.00 0.00 34.76 3.34
315 325 3.368248 AGATGCCCTGCAAATGTGTATT 58.632 40.909 0.00 0.00 43.62 1.89
316 326 3.022557 AGATGCCCTGCAAATGTGTAT 57.977 42.857 0.00 0.00 43.62 2.29
317 327 2.512692 AGATGCCCTGCAAATGTGTA 57.487 45.000 0.00 0.00 43.62 2.90
318 328 1.636148 AAGATGCCCTGCAAATGTGT 58.364 45.000 0.00 0.00 43.62 3.72
320 330 3.325716 AGAAAAAGATGCCCTGCAAATGT 59.674 39.130 0.00 0.00 43.62 2.71
321 331 3.934068 AGAAAAAGATGCCCTGCAAATG 58.066 40.909 0.00 0.00 43.62 2.32
344 357 3.114809 CTGCAAATGTCACTCGCAAAAA 58.885 40.909 0.00 0.00 31.10 1.94
345 358 2.543445 CCTGCAAATGTCACTCGCAAAA 60.543 45.455 0.00 0.00 31.10 2.44
346 359 1.001487 CCTGCAAATGTCACTCGCAAA 60.001 47.619 0.00 0.00 31.10 3.68
347 360 0.592637 CCTGCAAATGTCACTCGCAA 59.407 50.000 0.00 0.00 31.10 4.85
348 361 0.534877 ACCTGCAAATGTCACTCGCA 60.535 50.000 0.00 0.00 0.00 5.10
349 362 0.166814 GACCTGCAAATGTCACTCGC 59.833 55.000 5.96 0.00 0.00 5.03
350 363 1.511850 TGACCTGCAAATGTCACTCG 58.488 50.000 8.78 0.00 36.62 4.18
351 364 3.341823 AGATGACCTGCAAATGTCACTC 58.658 45.455 13.66 12.16 43.69 3.51
352 365 3.430042 AGATGACCTGCAAATGTCACT 57.570 42.857 13.66 10.72 43.69 3.41
353 366 4.697352 AGTAAGATGACCTGCAAATGTCAC 59.303 41.667 13.66 9.14 43.69 3.67
354 367 4.910195 AGTAAGATGACCTGCAAATGTCA 58.090 39.130 13.73 13.73 44.86 3.58
355 368 5.412594 TCAAGTAAGATGACCTGCAAATGTC 59.587 40.000 4.24 4.24 0.00 3.06
356 369 5.182001 GTCAAGTAAGATGACCTGCAAATGT 59.818 40.000 0.00 0.00 41.02 2.71
367 380 5.849510 TGAAGTTTCGGTCAAGTAAGATGA 58.150 37.500 0.00 0.00 0.00 2.92
376 389 2.031258 TGCACTGAAGTTTCGGTCAA 57.969 45.000 3.40 0.00 44.62 3.18
397 410 0.433492 CGACGACTTGGCAACGTTAG 59.567 55.000 15.64 10.18 40.29 2.34
414 434 0.937699 CGCTCGTTCTTTGTCCACGA 60.938 55.000 0.00 0.00 40.53 4.35
471 496 3.636300 GCCACAATATGCCACCTTCATTA 59.364 43.478 0.00 0.00 0.00 1.90
488 515 2.983030 GCAATGGACACCGCCACA 60.983 61.111 0.00 0.00 41.56 4.17
489 516 2.476534 CTTGCAATGGACACCGCCAC 62.477 60.000 0.00 0.00 41.56 5.01
490 517 2.203408 TTGCAATGGACACCGCCA 60.203 55.556 0.00 0.00 43.23 5.69
492 519 2.126346 GCTTGCAATGGACACCGC 60.126 61.111 0.00 0.00 0.00 5.68
493 520 1.804396 TTGGCTTGCAATGGACACCG 61.804 55.000 0.00 0.00 0.00 4.94
536 571 3.365265 GACTTTGCTGGCGGTGGG 61.365 66.667 0.00 0.00 0.00 4.61
646 683 0.099968 GGTAAAGCGGCCCGATTTTC 59.900 55.000 25.46 19.32 42.75 2.29
697 734 4.748798 ACCTCCTCCCTGGCCTGG 62.749 72.222 21.51 21.51 35.26 4.45
698 735 2.612115 AACCTCCTCCCTGGCCTG 60.612 66.667 3.32 2.54 35.26 4.85
699 736 2.612115 CAACCTCCTCCCTGGCCT 60.612 66.667 3.32 0.00 35.26 5.19
863 937 3.710722 CCACCTCCGCTTCCTGCT 61.711 66.667 0.00 0.00 40.11 4.24
876 950 3.258123 GCATTCTATCTCTCTCCTCCACC 59.742 52.174 0.00 0.00 0.00 4.61
877 951 4.151883 AGCATTCTATCTCTCTCCTCCAC 58.848 47.826 0.00 0.00 0.00 4.02
878 952 4.406456 GAGCATTCTATCTCTCTCCTCCA 58.594 47.826 0.00 0.00 0.00 3.86
985 1060 2.136229 GCATCCAATCCAAGCCCCC 61.136 63.158 0.00 0.00 0.00 5.40
986 1061 1.381599 TGCATCCAATCCAAGCCCC 60.382 57.895 0.00 0.00 0.00 5.80
987 1062 1.397390 CCTGCATCCAATCCAAGCCC 61.397 60.000 0.00 0.00 0.00 5.19
988 1063 0.685458 ACCTGCATCCAATCCAAGCC 60.685 55.000 0.00 0.00 0.00 4.35
989 1064 2.057137 TACCTGCATCCAATCCAAGC 57.943 50.000 0.00 0.00 0.00 4.01
990 1065 3.317149 CACATACCTGCATCCAATCCAAG 59.683 47.826 0.00 0.00 0.00 3.61
991 1066 3.289836 CACATACCTGCATCCAATCCAA 58.710 45.455 0.00 0.00 0.00 3.53
992 1067 2.934887 CACATACCTGCATCCAATCCA 58.065 47.619 0.00 0.00 0.00 3.41
995 1076 1.696063 GGCACATACCTGCATCCAAT 58.304 50.000 0.00 0.00 39.08 3.16
1013 1096 2.202676 GAGAAGGCGACTCAGCGG 60.203 66.667 0.00 0.00 42.68 5.52
1014 1097 2.202676 GGAGAAGGCGACTCAGCG 60.203 66.667 0.00 0.00 42.68 5.18
1038 1121 0.810031 CCAAATAGCTCGTCACCGGG 60.810 60.000 6.32 0.00 37.72 5.73
1039 1122 0.108329 ACCAAATAGCTCGTCACCGG 60.108 55.000 0.00 0.00 33.95 5.28
1042 1125 4.464112 GAAACAACCAAATAGCTCGTCAC 58.536 43.478 0.00 0.00 0.00 3.67
1043 1126 3.185594 CGAAACAACCAAATAGCTCGTCA 59.814 43.478 0.00 0.00 0.00 4.35
1046 1129 3.806316 ACGAAACAACCAAATAGCTCG 57.194 42.857 0.00 0.00 0.00 5.03
1047 1130 4.084223 TCGAACGAAACAACCAAATAGCTC 60.084 41.667 0.00 0.00 0.00 4.09
1048 1131 3.810941 TCGAACGAAACAACCAAATAGCT 59.189 39.130 0.00 0.00 0.00 3.32
1049 1132 4.136517 TCGAACGAAACAACCAAATAGC 57.863 40.909 0.00 0.00 0.00 2.97
1050 1133 6.367421 TGAATCGAACGAAACAACCAAATAG 58.633 36.000 0.12 0.00 0.00 1.73
1051 1134 6.017770 ACTGAATCGAACGAAACAACCAAATA 60.018 34.615 0.12 0.00 0.00 1.40
1052 1135 5.176407 TGAATCGAACGAAACAACCAAAT 57.824 34.783 0.12 0.00 0.00 2.32
1053 1136 4.095185 ACTGAATCGAACGAAACAACCAAA 59.905 37.500 0.12 0.00 0.00 3.28
1054 1137 3.623960 ACTGAATCGAACGAAACAACCAA 59.376 39.130 0.12 0.00 0.00 3.67
1055 1138 3.199677 ACTGAATCGAACGAAACAACCA 58.800 40.909 0.12 0.00 0.00 3.67
1056 1139 3.872560 ACTGAATCGAACGAAACAACC 57.127 42.857 0.12 0.00 0.00 3.77
1057 1140 4.828704 TGAACTGAATCGAACGAAACAAC 58.171 39.130 0.12 1.61 0.00 3.32
1058 1141 4.025229 CCTGAACTGAATCGAACGAAACAA 60.025 41.667 0.12 0.00 0.00 2.83
1059 1142 3.493129 CCTGAACTGAATCGAACGAAACA 59.507 43.478 0.12 4.16 0.00 2.83
1060 1143 3.120649 CCCTGAACTGAATCGAACGAAAC 60.121 47.826 0.12 0.00 0.00 2.78
1061 1144 3.064207 CCCTGAACTGAATCGAACGAAA 58.936 45.455 0.12 0.00 0.00 3.46
1062 1145 2.036733 ACCCTGAACTGAATCGAACGAA 59.963 45.455 0.12 0.00 0.00 3.85
1063 1146 1.616865 ACCCTGAACTGAATCGAACGA 59.383 47.619 0.00 0.00 0.00 3.85
1068 1151 1.270839 ACACCACCCTGAACTGAATCG 60.271 52.381 0.00 0.00 0.00 3.34
1103 1187 1.577328 ATTTCCTGACAACCTGCGCG 61.577 55.000 0.00 0.00 0.00 6.86
1107 1191 7.372451 TCGTAATTTATTTCCTGACAACCTG 57.628 36.000 0.00 0.00 0.00 4.00
1113 1197 9.438291 CACATGAATCGTAATTTATTTCCTGAC 57.562 33.333 0.00 0.00 0.00 3.51
1117 1201 9.567848 ACAACACATGAATCGTAATTTATTTCC 57.432 29.630 0.00 0.00 0.00 3.13
1122 1206 9.605955 CAAGAACAACACATGAATCGTAATTTA 57.394 29.630 0.00 0.00 0.00 1.40
1125 1209 6.206634 ACCAAGAACAACACATGAATCGTAAT 59.793 34.615 0.00 0.00 0.00 1.89
1126 1210 5.529430 ACCAAGAACAACACATGAATCGTAA 59.471 36.000 0.00 0.00 0.00 3.18
1127 1211 5.060506 ACCAAGAACAACACATGAATCGTA 58.939 37.500 0.00 0.00 0.00 3.43
1128 1212 3.882888 ACCAAGAACAACACATGAATCGT 59.117 39.130 0.00 0.00 0.00 3.73
1129 1213 4.488126 ACCAAGAACAACACATGAATCG 57.512 40.909 0.00 0.00 0.00 3.34
1131 1215 6.158598 GCATAACCAAGAACAACACATGAAT 58.841 36.000 0.00 0.00 0.00 2.57
1135 1222 3.258123 GGGCATAACCAAGAACAACACAT 59.742 43.478 0.00 0.00 42.05 3.21
1149 1236 1.627879 CAACGCAACATGGGCATAAC 58.372 50.000 11.48 0.00 33.10 1.89
1156 1243 1.153784 GCATCCCAACGCAACATGG 60.154 57.895 0.00 0.00 36.42 3.66
1158 1245 1.382522 CTAGCATCCCAACGCAACAT 58.617 50.000 0.00 0.00 0.00 2.71
1160 1247 1.993369 GCCTAGCATCCCAACGCAAC 61.993 60.000 0.00 0.00 0.00 4.17
1164 1251 1.097547 CAAGGCCTAGCATCCCAACG 61.098 60.000 5.16 0.00 0.00 4.10
1167 1254 1.207488 ACACAAGGCCTAGCATCCCA 61.207 55.000 5.16 0.00 0.00 4.37
1173 1260 1.078143 CCCTCACACAAGGCCTAGC 60.078 63.158 5.16 0.00 34.88 3.42
1177 1265 0.329596 ATCTTCCCTCACACAAGGCC 59.670 55.000 0.00 0.00 34.88 5.19
1186 1274 7.465900 AAAACCCTATGATTATCTTCCCTCA 57.534 36.000 0.00 0.00 0.00 3.86
1194 1282 9.606631 CCATAGAGCTAAAACCCTATGATTATC 57.393 37.037 15.79 0.00 40.30 1.75
1195 1283 9.338968 TCCATAGAGCTAAAACCCTATGATTAT 57.661 33.333 15.79 0.00 40.30 1.28
1196 1284 8.594550 GTCCATAGAGCTAAAACCCTATGATTA 58.405 37.037 15.79 3.02 40.30 1.75
1213 1301 2.223829 CGCCCAAGTGTAGTCCATAGAG 60.224 54.545 0.00 0.00 0.00 2.43
1214 1302 1.754803 CGCCCAAGTGTAGTCCATAGA 59.245 52.381 0.00 0.00 0.00 1.98
1215 1303 1.202533 CCGCCCAAGTGTAGTCCATAG 60.203 57.143 0.00 0.00 0.00 2.23
1216 1304 0.828022 CCGCCCAAGTGTAGTCCATA 59.172 55.000 0.00 0.00 0.00 2.74
1217 1305 1.198759 ACCGCCCAAGTGTAGTCCAT 61.199 55.000 0.00 0.00 0.00 3.41
1218 1306 1.412453 AACCGCCCAAGTGTAGTCCA 61.412 55.000 0.00 0.00 0.00 4.02
1219 1307 0.250597 AAACCGCCCAAGTGTAGTCC 60.251 55.000 0.00 0.00 0.00 3.85
1220 1308 1.265905 CAAAACCGCCCAAGTGTAGTC 59.734 52.381 0.00 0.00 0.00 2.59
1221 1309 1.314730 CAAAACCGCCCAAGTGTAGT 58.685 50.000 0.00 0.00 0.00 2.73
1222 1310 1.001815 CACAAAACCGCCCAAGTGTAG 60.002 52.381 0.00 0.00 0.00 2.74
1223 1311 1.025812 CACAAAACCGCCCAAGTGTA 58.974 50.000 0.00 0.00 0.00 2.90
1224 1312 0.968393 ACACAAAACCGCCCAAGTGT 60.968 50.000 0.00 0.00 35.58 3.55
1225 1313 0.527385 CACACAAAACCGCCCAAGTG 60.527 55.000 0.00 0.00 0.00 3.16
1226 1314 1.671901 CCACACAAAACCGCCCAAGT 61.672 55.000 0.00 0.00 0.00 3.16
1227 1315 1.067250 CCACACAAAACCGCCCAAG 59.933 57.895 0.00 0.00 0.00 3.61
1228 1316 0.757188 ATCCACACAAAACCGCCCAA 60.757 50.000 0.00 0.00 0.00 4.12
1229 1317 0.757188 AATCCACACAAAACCGCCCA 60.757 50.000 0.00 0.00 0.00 5.36
1230 1318 0.391228 AAATCCACACAAAACCGCCC 59.609 50.000 0.00 0.00 0.00 6.13
1231 1319 1.496934 CAAATCCACACAAAACCGCC 58.503 50.000 0.00 0.00 0.00 6.13
1237 1325 2.288091 CGTCATGCCAAATCCACACAAA 60.288 45.455 0.00 0.00 0.00 2.83
1255 1343 0.743345 CCGTTTCCCCATTCTCCGTC 60.743 60.000 0.00 0.00 0.00 4.79
1256 1344 1.196104 TCCGTTTCCCCATTCTCCGT 61.196 55.000 0.00 0.00 0.00 4.69
1257 1345 0.462047 CTCCGTTTCCCCATTCTCCG 60.462 60.000 0.00 0.00 0.00 4.63
1258 1346 0.748367 GCTCCGTTTCCCCATTCTCC 60.748 60.000 0.00 0.00 0.00 3.71
1259 1347 0.748367 GGCTCCGTTTCCCCATTCTC 60.748 60.000 0.00 0.00 0.00 2.87
1260 1348 1.303282 GGCTCCGTTTCCCCATTCT 59.697 57.895 0.00 0.00 0.00 2.40
1263 1351 3.006728 TCGGCTCCGTTTCCCCAT 61.007 61.111 8.28 0.00 40.74 4.00
1287 1375 3.365265 CCCGTTTGAGCACCAGGC 61.365 66.667 0.00 0.00 45.30 4.85
1290 1378 1.112315 AATTGCCCGTTTGAGCACCA 61.112 50.000 0.00 0.00 39.10 4.17
1291 1379 0.388520 GAATTGCCCGTTTGAGCACC 60.389 55.000 0.00 0.00 39.10 5.01
1316 1404 3.615155 GGGAGGAAGAAGAAGTGAATGG 58.385 50.000 0.00 0.00 0.00 3.16
1317 1405 3.265479 AGGGGAGGAAGAAGAAGTGAATG 59.735 47.826 0.00 0.00 0.00 2.67
1321 1409 3.416156 CAAAGGGGAGGAAGAAGAAGTG 58.584 50.000 0.00 0.00 0.00 3.16
1322 1410 2.376855 CCAAAGGGGAGGAAGAAGAAGT 59.623 50.000 0.00 0.00 40.01 3.01
1341 1429 1.698506 AGAACACGAAAAATGCCCCA 58.301 45.000 0.00 0.00 0.00 4.96
1342 1430 2.812358 AAGAACACGAAAAATGCCCC 57.188 45.000 0.00 0.00 0.00 5.80
1344 1432 5.905480 AATGAAAGAACACGAAAAATGCC 57.095 34.783 0.00 0.00 0.00 4.40
1346 1434 7.114811 CCCTGTAATGAAAGAACACGAAAAATG 59.885 37.037 0.00 0.00 0.00 2.32
1352 1440 4.039973 ACTCCCTGTAATGAAAGAACACGA 59.960 41.667 0.00 0.00 0.00 4.35
1353 1441 4.315803 ACTCCCTGTAATGAAAGAACACG 58.684 43.478 0.00 0.00 0.00 4.49
1354 1442 5.875359 CCTACTCCCTGTAATGAAAGAACAC 59.125 44.000 0.00 0.00 0.00 3.32
1356 1444 4.876679 GCCTACTCCCTGTAATGAAAGAAC 59.123 45.833 0.00 0.00 0.00 3.01
1365 1453 3.557686 GGTTTTTCGCCTACTCCCTGTAA 60.558 47.826 0.00 0.00 0.00 2.41
1366 1454 2.027837 GGTTTTTCGCCTACTCCCTGTA 60.028 50.000 0.00 0.00 0.00 2.74
1367 1455 1.271217 GGTTTTTCGCCTACTCCCTGT 60.271 52.381 0.00 0.00 0.00 4.00
1368 1456 1.271163 TGGTTTTTCGCCTACTCCCTG 60.271 52.381 0.00 0.00 0.00 4.45
1369 1457 1.003233 CTGGTTTTTCGCCTACTCCCT 59.997 52.381 0.00 0.00 0.00 4.20
1370 1458 1.450025 CTGGTTTTTCGCCTACTCCC 58.550 55.000 0.00 0.00 0.00 4.30
1372 1460 0.442699 CGCTGGTTTTTCGCCTACTC 59.557 55.000 0.00 0.00 0.00 2.59
1373 1461 1.574702 GCGCTGGTTTTTCGCCTACT 61.575 55.000 0.00 0.00 42.71 2.57
1374 1462 1.154282 GCGCTGGTTTTTCGCCTAC 60.154 57.895 0.00 0.00 42.71 3.18
1375 1463 2.673114 CGCGCTGGTTTTTCGCCTA 61.673 57.895 5.56 0.00 45.34 3.93
1376 1464 4.025401 CGCGCTGGTTTTTCGCCT 62.025 61.111 5.56 0.00 45.34 5.52
1377 1465 3.817274 AACGCGCTGGTTTTTCGCC 62.817 57.895 5.73 0.00 45.34 5.54
1378 1466 2.353030 AACGCGCTGGTTTTTCGC 60.353 55.556 5.73 0.00 44.76 4.70
1379 1467 1.724581 GGAACGCGCTGGTTTTTCG 60.725 57.895 5.73 0.00 0.00 3.46
1380 1468 1.371267 GGGAACGCGCTGGTTTTTC 60.371 57.895 5.73 0.00 0.00 2.29
1392 1480 1.506262 CGGCTGAAAATGGGGAACG 59.494 57.895 0.00 0.00 0.00 3.95
1404 1492 0.883153 TTGTACTACGAAGCGGCTGA 59.117 50.000 1.81 0.00 0.00 4.26
1407 1495 1.135460 AGACTTGTACTACGAAGCGGC 60.135 52.381 0.00 0.00 0.00 6.53
1408 1496 2.915738 AGACTTGTACTACGAAGCGG 57.084 50.000 0.00 0.00 0.00 5.52
1410 1498 6.707599 AATCAAAGACTTGTACTACGAAGC 57.292 37.500 0.00 0.00 33.94 3.86
1415 1503 5.705905 AGCCCAAATCAAAGACTTGTACTAC 59.294 40.000 0.00 0.00 33.94 2.73
1430 1518 7.671495 ATGAAAACAATAAACAGCCCAAATC 57.329 32.000 0.00 0.00 0.00 2.17
1437 1525 7.629130 TGCTGAAAATGAAAACAATAAACAGC 58.371 30.769 0.00 0.00 43.64 4.40
1438 1526 9.985318 TTTGCTGAAAATGAAAACAATAAACAG 57.015 25.926 0.00 0.00 0.00 3.16
1439 1527 9.985318 CTTTGCTGAAAATGAAAACAATAAACA 57.015 25.926 0.00 0.00 0.00 2.83
1440 1528 9.986833 ACTTTGCTGAAAATGAAAACAATAAAC 57.013 25.926 0.00 0.00 0.00 2.01
1447 1535 9.650371 GGAATTTACTTTGCTGAAAATGAAAAC 57.350 29.630 0.00 0.00 0.00 2.43
1448 1536 9.388506 TGGAATTTACTTTGCTGAAAATGAAAA 57.611 25.926 0.00 0.00 0.00 2.29
1449 1537 8.954950 TGGAATTTACTTTGCTGAAAATGAAA 57.045 26.923 0.00 0.00 0.00 2.69
1452 1540 7.951530 ACTGGAATTTACTTTGCTGAAAATG 57.048 32.000 0.00 0.00 0.00 2.32
1461 1549 9.893305 AACGAATAAGAACTGGAATTTACTTTG 57.107 29.630 0.00 0.00 0.00 2.77
1467 1555 9.449719 AGTATGAACGAATAAGAACTGGAATTT 57.550 29.630 0.00 0.00 0.00 1.82
1475 1563 6.974622 TCCCGTAAGTATGAACGAATAAGAAC 59.025 38.462 0.00 0.00 41.55 3.01
1499 1590 5.473504 TGGTTTTAAGAAAGTGGCATCTCTC 59.526 40.000 0.00 0.00 0.00 3.20
1500 1591 5.385198 TGGTTTTAAGAAAGTGGCATCTCT 58.615 37.500 0.00 0.00 0.00 3.10
1517 1608 3.935828 CGGGTTGTTGACAAAATGGTTTT 59.064 39.130 0.00 0.00 37.63 2.43
1536 1627 2.278738 CTTTCCCCCAATCCCGGG 59.721 66.667 16.85 16.85 46.94 5.73
1538 1629 1.379843 CCACTTTCCCCCAATCCCG 60.380 63.158 0.00 0.00 0.00 5.14
1580 1671 3.627577 CGGGGGAATTGATTCTACAACAG 59.372 47.826 3.94 0.00 37.00 3.16
1661 1754 0.759346 AGAGTTCACACCAGGTCACC 59.241 55.000 0.00 0.00 0.00 4.02
1662 1755 1.412710 TGAGAGTTCACACCAGGTCAC 59.587 52.381 0.00 0.00 0.00 3.67
1663 1756 1.788229 TGAGAGTTCACACCAGGTCA 58.212 50.000 0.00 0.00 0.00 4.02
1664 1757 2.484889 GTTGAGAGTTCACACCAGGTC 58.515 52.381 0.00 0.00 31.71 3.85
1665 1758 1.141053 GGTTGAGAGTTCACACCAGGT 59.859 52.381 0.00 0.00 35.92 4.00
1666 1759 1.140852 TGGTTGAGAGTTCACACCAGG 59.859 52.381 7.19 0.00 38.46 4.45
1667 1760 2.620251 TGGTTGAGAGTTCACACCAG 57.380 50.000 7.19 0.00 38.46 4.00
1668 1761 2.437651 TGATGGTTGAGAGTTCACACCA 59.562 45.455 11.29 11.29 42.83 4.17
1705 1798 5.231702 TCCAACTACAAATAAAGACGGGT 57.768 39.130 0.00 0.00 0.00 5.28
1713 1806 6.934056 AGCAAATGCATCCAACTACAAATAA 58.066 32.000 8.28 0.00 45.16 1.40
1715 1808 5.410355 AGCAAATGCATCCAACTACAAAT 57.590 34.783 8.28 0.00 45.16 2.32
1720 1813 2.496871 CCCAAGCAAATGCATCCAACTA 59.503 45.455 8.28 0.00 45.16 2.24
1742 1835 6.092122 TCTGAAAAATAAGTACATGTCAGGCG 59.908 38.462 0.00 0.00 33.62 5.52
1750 1843 7.611855 CCCCACTTCTCTGAAAAATAAGTACAT 59.388 37.037 0.00 0.00 0.00 2.29
1850 1944 1.289066 CTTCTCTTGGCCGACGTCA 59.711 57.895 17.16 0.00 0.00 4.35
1853 1947 0.038159 AGAACTTCTCTTGGCCGACG 60.038 55.000 0.00 0.00 0.00 5.12
1931 2025 0.391130 CGTTGGCCGGAGAATTCTGA 60.391 55.000 14.00 0.00 0.00 3.27
1940 2034 4.321966 TGCATCACGTTGGCCGGA 62.322 61.111 5.05 0.00 42.24 5.14
1973 2067 2.045926 AGGTCGACATTGGCAGCC 60.046 61.111 18.91 3.66 0.00 4.85
2042 2136 2.482142 GGTTATGCTCTGGAGGTCTTCG 60.482 54.545 0.00 0.00 0.00 3.79
2138 2232 3.503363 GCTGCATCCGCACACCTC 61.503 66.667 0.00 0.00 45.36 3.85
2264 2358 0.036022 GCAGTGCTCTTCTCTTGGGT 59.964 55.000 8.18 0.00 0.00 4.51
2342 2436 3.244387 TGAATGACTGTCCACCGAATTCA 60.244 43.478 12.31 12.31 31.91 2.57
2345 2439 2.303022 ACTGAATGACTGTCCACCGAAT 59.697 45.455 5.17 0.00 0.00 3.34
2354 2448 2.975489 AGGGAGTGAACTGAATGACTGT 59.025 45.455 0.00 0.00 0.00 3.55
2390 2484 2.930040 AGAATCATACAACGGCTCAACG 59.070 45.455 0.00 0.00 40.31 4.10
2400 2494 5.415701 GTGGGCAGAAGAAAGAATCATACAA 59.584 40.000 0.00 0.00 0.00 2.41
2426 2520 5.652014 TGGATCAACCATGACCTTATTTGTC 59.348 40.000 0.00 0.00 44.64 3.18
2459 2553 5.029807 TGTCATATGTTATCCCGCTTTCA 57.970 39.130 1.90 0.00 0.00 2.69
2468 2562 7.933577 TCAATGGTTCTCCTGTCATATGTTATC 59.066 37.037 1.90 0.00 34.23 1.75
2469 2563 7.805163 TCAATGGTTCTCCTGTCATATGTTAT 58.195 34.615 1.90 0.00 34.23 1.89
2735 2829 1.339438 TGCATCTGCTCCCTGTTCTTC 60.339 52.381 3.53 0.00 42.66 2.87
2885 2979 3.555518 GGATTTCACGAAAGCTGAACAC 58.444 45.455 7.62 0.00 36.95 3.32
2886 2980 2.552315 GGGATTTCACGAAAGCTGAACA 59.448 45.455 7.62 0.00 36.95 3.18
3044 3143 5.046448 TGGTTTTTGCTATGATTTCCTGCAT 60.046 36.000 0.00 0.00 33.50 3.96
3169 3268 3.443681 CAGTTGCCCCGATGTTTTCTAAT 59.556 43.478 0.00 0.00 0.00 1.73
3235 3334 7.507829 CCTTCTCTGAAGTAATTGGATCATCT 58.492 38.462 6.57 0.00 0.00 2.90
3244 3343 2.838202 TCCGGCCTTCTCTGAAGTAATT 59.162 45.455 0.00 0.00 0.00 1.40
3322 3421 1.677637 GGAGAGGGTCCAAGTAGCCG 61.678 65.000 0.00 0.00 46.10 5.52
3372 3471 2.371841 TCAGGTATGTTTCTGCACAGGT 59.628 45.455 0.00 0.00 0.00 4.00
3413 3512 9.403110 CTCTTTTCAATGTTTTATGTGGAAGAG 57.597 33.333 0.00 0.00 32.27 2.85
3414 3513 7.867403 GCTCTTTTCAATGTTTTATGTGGAAGA 59.133 33.333 0.00 0.00 0.00 2.87
3415 3514 7.652909 TGCTCTTTTCAATGTTTTATGTGGAAG 59.347 33.333 0.00 0.00 0.00 3.46
3430 3529 7.095910 TGACAAGACAAAATTGCTCTTTTCAA 58.904 30.769 16.20 0.00 35.15 2.69
3431 3530 6.629128 TGACAAGACAAAATTGCTCTTTTCA 58.371 32.000 15.38 15.38 35.39 2.69
3472 3574 7.944554 AGGGAAATGTTCTCAGATACTTCAAAA 59.055 33.333 0.00 0.00 30.58 2.44
3474 3576 7.020827 AGGGAAATGTTCTCAGATACTTCAA 57.979 36.000 0.00 0.00 30.58 2.69
3477 3579 5.649831 GCAAGGGAAATGTTCTCAGATACTT 59.350 40.000 0.00 0.00 30.58 2.24
3482 3587 3.149196 GTGCAAGGGAAATGTTCTCAGA 58.851 45.455 0.00 0.00 30.58 3.27
3487 3592 5.415701 TCTTATCAGTGCAAGGGAAATGTTC 59.584 40.000 0.00 0.00 0.00 3.18
3495 3600 5.220931 GCAACTATTCTTATCAGTGCAAGGG 60.221 44.000 0.00 0.00 0.00 3.95
3503 3608 7.917505 GGACAAAATGGCAACTATTCTTATCAG 59.082 37.037 0.00 0.00 37.61 2.90
3505 3610 7.771183 TGGACAAAATGGCAACTATTCTTATC 58.229 34.615 0.00 0.00 37.61 1.75
3513 3618 4.404073 AGTGTTTGGACAAAATGGCAACTA 59.596 37.500 0.00 0.00 37.57 2.24
3516 3621 3.902881 AGTGTTTGGACAAAATGGCAA 57.097 38.095 0.00 0.00 37.57 4.52
3518 3623 4.441792 AGAAAGTGTTTGGACAAAATGGC 58.558 39.130 0.00 0.00 37.57 4.40
3520 3625 8.702163 AGTTTAGAAAGTGTTTGGACAAAATG 57.298 30.769 0.00 0.00 37.57 2.32
3522 3627 7.971722 GCTAGTTTAGAAAGTGTTTGGACAAAA 59.028 33.333 0.00 0.00 37.57 2.44
3523 3628 7.121463 TGCTAGTTTAGAAAGTGTTTGGACAAA 59.879 33.333 0.00 0.00 37.57 2.83
3524 3629 6.600032 TGCTAGTTTAGAAAGTGTTTGGACAA 59.400 34.615 0.00 0.00 37.57 3.18
3525 3630 6.116806 TGCTAGTTTAGAAAGTGTTTGGACA 58.883 36.000 0.00 0.00 0.00 4.02
3526 3631 6.613755 TGCTAGTTTAGAAAGTGTTTGGAC 57.386 37.500 0.00 0.00 0.00 4.02
3527 3632 7.817418 AATGCTAGTTTAGAAAGTGTTTGGA 57.183 32.000 0.00 0.00 0.00 3.53
3528 3633 8.755018 CAAAATGCTAGTTTAGAAAGTGTTTGG 58.245 33.333 0.00 0.00 0.00 3.28
3529 3634 9.301153 ACAAAATGCTAGTTTAGAAAGTGTTTG 57.699 29.630 0.00 0.00 0.00 2.93
3530 3635 9.516314 GACAAAATGCTAGTTTAGAAAGTGTTT 57.484 29.630 0.00 0.00 0.00 2.83
3531 3636 8.135529 GGACAAAATGCTAGTTTAGAAAGTGTT 58.864 33.333 0.00 0.00 0.00 3.32
3532 3637 7.284489 TGGACAAAATGCTAGTTTAGAAAGTGT 59.716 33.333 0.00 0.00 0.00 3.55
3533 3638 7.648142 TGGACAAAATGCTAGTTTAGAAAGTG 58.352 34.615 0.00 0.00 0.00 3.16
3534 3639 7.817418 TGGACAAAATGCTAGTTTAGAAAGT 57.183 32.000 0.00 0.00 0.00 2.66
3535 3640 8.968242 GTTTGGACAAAATGCTAGTTTAGAAAG 58.032 33.333 0.00 0.00 31.33 2.62
3536 3641 8.470805 TGTTTGGACAAAATGCTAGTTTAGAAA 58.529 29.630 0.00 0.00 31.49 2.52
3537 3642 8.001881 TGTTTGGACAAAATGCTAGTTTAGAA 57.998 30.769 0.00 0.00 31.49 2.10
3538 3643 7.284489 ACTGTTTGGACAAAATGCTAGTTTAGA 59.716 33.333 0.00 0.00 34.85 2.10
3539 3644 7.425606 ACTGTTTGGACAAAATGCTAGTTTAG 58.574 34.615 0.00 0.00 34.85 1.85
3540 3645 7.341445 ACTGTTTGGACAAAATGCTAGTTTA 57.659 32.000 0.00 0.00 34.85 2.01
3541 3646 6.220726 ACTGTTTGGACAAAATGCTAGTTT 57.779 33.333 0.00 0.00 34.85 2.66
3542 3647 5.852282 ACTGTTTGGACAAAATGCTAGTT 57.148 34.783 0.00 0.00 34.85 2.24
3543 3648 5.852282 AACTGTTTGGACAAAATGCTAGT 57.148 34.783 0.00 0.00 34.85 2.57
3544 3649 6.507023 AGAAACTGTTTGGACAAAATGCTAG 58.493 36.000 11.03 0.00 34.85 3.42
3545 3650 6.463995 AGAAACTGTTTGGACAAAATGCTA 57.536 33.333 11.03 0.00 34.85 3.49
3546 3651 5.343307 AGAAACTGTTTGGACAAAATGCT 57.657 34.783 11.03 0.00 34.85 3.79
3547 3652 7.277760 AGTTTAGAAACTGTTTGGACAAAATGC 59.722 33.333 11.03 0.00 46.80 3.56
3579 3684 7.666388 ACATAGGCAGTAACTCCTACTATAGTG 59.334 40.741 15.90 5.61 38.92 2.74
3584 3689 7.124052 AGAAACATAGGCAGTAACTCCTACTA 58.876 38.462 0.00 0.00 38.92 1.82
3588 3693 6.869206 TTAGAAACATAGGCAGTAACTCCT 57.131 37.500 0.00 0.00 36.51 3.69
3598 5936 7.549488 ACTGACATACTGTTTAGAAACATAGGC 59.451 37.037 8.22 2.68 46.71 3.93
3649 5993 6.761099 TCTACTTTGAGCTCGAGATTTAGT 57.239 37.500 18.75 16.13 0.00 2.24
3657 6001 2.812591 ACGACTTCTACTTTGAGCTCGA 59.187 45.455 9.64 3.88 0.00 4.04
3658 6002 2.911723 CACGACTTCTACTTTGAGCTCG 59.088 50.000 9.64 0.00 0.00 5.03
3659 6003 2.664085 GCACGACTTCTACTTTGAGCTC 59.336 50.000 6.82 6.82 0.00 4.09
3668 6012 1.000607 TCACCAGTGCACGACTTCTAC 60.001 52.381 12.01 0.00 29.75 2.59
3674 6018 0.319900 ATCAGTCACCAGTGCACGAC 60.320 55.000 12.01 12.57 0.00 4.34
3715 6059 6.087518 GCATGTACAATGCATAGTATCGAG 57.912 41.667 19.12 0.00 44.00 4.04
3726 6087 1.913403 GCGAACTTGCATGTACAATGC 59.087 47.619 17.91 17.91 44.76 3.56
3735 6096 2.255252 GCGGTTGCGAACTTGCAT 59.745 55.556 0.00 0.00 45.78 3.96
3745 6106 3.959975 TTTGGCACGAGCGGTTGC 61.960 61.111 0.64 1.76 43.41 4.17
3768 6129 8.449251 TTCATGCACATATTCATGTTAGCTAA 57.551 30.769 0.86 0.86 42.98 3.09
3784 6145 0.888736 CCGACCCTGTTTCATGCACA 60.889 55.000 0.00 0.00 0.00 4.57
3785 6146 0.605319 TCCGACCCTGTTTCATGCAC 60.605 55.000 0.00 0.00 0.00 4.57
3899 6260 1.499056 CGCTGTGCACCATCTTGAC 59.501 57.895 15.69 0.00 0.00 3.18
3964 6325 1.681166 CCATTGGGCTGGTGAGAAGAG 60.681 57.143 0.00 0.00 0.00 2.85
3982 6343 0.813610 CGTCCACAAGTGTCTTGCCA 60.814 55.000 9.06 0.00 0.00 4.92
4102 6463 2.170166 GGGTTCATGCCAGATTTGACA 58.830 47.619 0.00 0.00 0.00 3.58
4276 6637 2.842462 ACTGAGACCACCGTGGCA 60.842 61.111 17.99 6.82 42.67 4.92
4354 6715 2.956987 GTCGCAGCAATGCCAAGT 59.043 55.556 0.00 0.00 0.00 3.16
5035 7396 1.957177 TGACTGTTCTCGTTGCTCTCT 59.043 47.619 0.00 0.00 0.00 3.10
5281 7642 3.314331 AGGGCACGGTCAGAGGTG 61.314 66.667 0.00 0.00 37.22 4.00
5427 7789 1.468914 GAAGACGGCAAAGGGATGTTC 59.531 52.381 0.00 0.00 0.00 3.18
5569 7948 9.052759 AGACAAACAAGAACGAAACTATACAAT 57.947 29.630 0.00 0.00 0.00 2.71
5570 7949 8.428186 AGACAAACAAGAACGAAACTATACAA 57.572 30.769 0.00 0.00 0.00 2.41
5582 7963 7.085052 ACAACCTAAGAAGACAAACAAGAAC 57.915 36.000 0.00 0.00 0.00 3.01
5603 7985 7.116075 TCATCAAAGCCTAGCCTTAATTACAA 58.884 34.615 0.00 0.00 0.00 2.41
5723 8105 5.048504 TGAATCTCAAATGAGTTCTGCAACC 60.049 40.000 10.06 0.00 42.60 3.77
5810 8207 5.004630 CGTAGTCAGTCGAGTAGAACTACAG 59.995 48.000 24.62 18.11 39.16 2.74
5833 8230 2.481854 CTCAAGGGAAGATCATGAGCG 58.518 52.381 5.12 0.00 32.05 5.03
5869 8266 8.953368 AAAGAATCAAAGAAACTGCAAATCTT 57.047 26.923 3.22 3.22 35.00 2.40
5875 8272 6.629128 TGACAAAAGAATCAAAGAAACTGCA 58.371 32.000 0.00 0.00 0.00 4.41
5886 8283 8.463930 AACTTGGATAGTTGACAAAAGAATCA 57.536 30.769 2.79 0.00 45.33 2.57
5887 8284 8.567948 TGAACTTGGATAGTTGACAAAAGAATC 58.432 33.333 2.79 2.26 47.00 2.52
5890 8287 7.279615 TCTGAACTTGGATAGTTGACAAAAGA 58.720 34.615 2.79 0.00 47.00 2.52
5895 8292 6.358974 TCATCTGAACTTGGATAGTTGACA 57.641 37.500 0.00 0.00 47.00 3.58
5896 8293 5.814705 CCTCATCTGAACTTGGATAGTTGAC 59.185 44.000 0.00 0.00 47.00 3.18
5982 8380 3.278574 TGTGTGGAAGAAACAGTGAAGG 58.721 45.455 0.00 0.00 0.00 3.46
6030 8428 9.014297 ACTGGTTTTCGATTTCTTGAGAATATT 57.986 29.630 0.00 0.00 33.54 1.28
6031 8429 8.567285 ACTGGTTTTCGATTTCTTGAGAATAT 57.433 30.769 0.00 0.00 33.54 1.28
6084 8494 7.617041 AGAATCTTTGTTGTACTTCTATGGC 57.383 36.000 0.00 0.00 0.00 4.40
6123 8537 7.527457 CCTTTGGTTTGTTAGTTGCTAGTATC 58.473 38.462 0.00 0.00 0.00 2.24
6142 8556 5.163893 CGCGGTATAATATAACAGCCTTTGG 60.164 44.000 0.00 0.00 33.92 3.28
6144 8558 4.933400 CCGCGGTATAATATAACAGCCTTT 59.067 41.667 19.50 0.00 33.92 3.11
6318 8732 7.201688 GGAGATTTCAAGCTTTACATTCTCCTC 60.202 40.741 22.85 11.35 42.14 3.71
6319 8733 6.601217 GGAGATTTCAAGCTTTACATTCTCCT 59.399 38.462 22.85 5.17 42.14 3.69
6320 8734 6.375455 TGGAGATTTCAAGCTTTACATTCTCC 59.625 38.462 23.12 23.12 44.46 3.71
6331 8748 3.350833 GTCCACATGGAGATTTCAAGCT 58.649 45.455 0.00 0.00 46.49 3.74
6360 8777 0.387565 GGAAGCTGGAGATCCGACTC 59.612 60.000 0.00 0.00 39.43 3.36
6361 8778 0.032615 AGGAAGCTGGAGATCCGACT 60.033 55.000 0.00 0.00 38.31 4.18
6390 8807 3.372025 GCCCTTTCCTCAGATGTACCATT 60.372 47.826 0.00 0.00 0.00 3.16
6395 8812 2.270434 AGGCCCTTTCCTCAGATGTA 57.730 50.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.