Multiple sequence alignment - TraesCS7A01G211700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G211700 chr7A 100.000 2765 0 0 1 2765 174837848 174840612 0.000000e+00 5107
1 TraesCS7A01G211700 chr2D 96.288 916 34 0 1850 2765 214271970 214272885 0.000000e+00 1504
2 TraesCS7A01G211700 chr2D 95.633 916 40 0 1850 2765 118322968 118323883 0.000000e+00 1471
3 TraesCS7A01G211700 chr2D 89.271 727 71 3 963 1682 118322249 118322975 0.000000e+00 904
4 TraesCS7A01G211700 chr2D 88.095 630 68 2 1059 1682 214271349 214271977 0.000000e+00 741
5 TraesCS7A01G211700 chr3A 95.132 945 45 1 1 945 80539343 80538400 0.000000e+00 1489
6 TraesCS7A01G211700 chr3A 93.812 905 55 1 1 904 607347115 607346211 0.000000e+00 1360
7 TraesCS7A01G211700 chr3A 96.532 173 5 1 1683 1854 121482455 121482283 4.510000e-73 285
8 TraesCS7A01G211700 chr3A 100.000 62 0 0 886 947 607340688 607340627 6.260000e-22 115
9 TraesCS7A01G211700 chr3D 95.415 916 42 0 1850 2765 380841852 380840937 0.000000e+00 1459
10 TraesCS7A01G211700 chr3D 88.599 728 64 8 963 1682 380842561 380841845 0.000000e+00 867
11 TraesCS7A01G211700 chr1B 94.978 916 46 0 1850 2765 444938047 444938962 0.000000e+00 1437
12 TraesCS7A01G211700 chr1B 83.310 701 106 7 992 1682 441802104 441801405 1.080000e-178 636
13 TraesCS7A01G211700 chr1B 84.982 566 80 5 1120 1682 441944816 441944253 1.110000e-158 569
14 TraesCS7A01G211700 chr1B 84.211 171 22 2 1681 1849 667972070 667972237 7.920000e-36 161
15 TraesCS7A01G211700 chr2B 94.760 916 47 1 1850 2765 302914038 302913124 0.000000e+00 1424
16 TraesCS7A01G211700 chr2B 93.668 916 58 0 1850 2765 548523198 548524113 0.000000e+00 1371
17 TraesCS7A01G211700 chr2B 92.459 915 69 0 1850 2764 296755180 296754266 0.000000e+00 1308
18 TraesCS7A01G211700 chr2B 88.966 725 75 2 963 1682 302914755 302914031 0.000000e+00 891
19 TraesCS7A01G211700 chr2B 85.399 726 91 8 963 1686 548522496 548523208 0.000000e+00 739
20 TraesCS7A01G211700 chr5D 94.426 915 51 0 1850 2764 500388881 500389795 0.000000e+00 1408
21 TraesCS7A01G211700 chr5D 91.034 948 63 4 1 947 475324440 475325366 0.000000e+00 1260
22 TraesCS7A01G211700 chr5D 85.882 680 86 6 1009 1682 500388213 500388888 0.000000e+00 715
23 TraesCS7A01G211700 chr5D 92.798 486 33 2 1 485 348107880 348107396 0.000000e+00 702
24 TraesCS7A01G211700 chr5D 92.237 219 9 1 729 947 348107408 348107198 1.240000e-78 303
25 TraesCS7A01G211700 chr7B 92.896 915 64 1 1850 2764 112108916 112109829 0.000000e+00 1328
26 TraesCS7A01G211700 chr7B 91.351 925 77 3 1 924 183790290 183789368 0.000000e+00 1262
27 TraesCS7A01G211700 chr7B 89.167 600 64 1 348 947 99226680 99226082 0.000000e+00 747
28 TraesCS7A01G211700 chr7B 84.211 342 52 2 209 548 80027729 80027388 5.710000e-87 331
29 TraesCS7A01G211700 chr7B 83.908 174 20 7 1681 1849 749286544 749286374 2.850000e-35 159
30 TraesCS7A01G211700 chr5B 85.302 728 99 3 963 1682 621793917 621794644 0.000000e+00 745
31 TraesCS7A01G211700 chr6A 90.127 314 27 4 223 534 366860345 366860034 3.320000e-109 405
32 TraesCS7A01G211700 chr6A 94.348 230 13 0 718 947 83527326 83527555 1.220000e-93 353
33 TraesCS7A01G211700 chr3B 83.041 342 56 2 209 548 297998275 297998616 2.670000e-80 309
34 TraesCS7A01G211700 chr3B 89.349 169 15 2 1683 1848 49686288 49686120 2.790000e-50 209
35 TraesCS7A01G211700 chr7D 96.512 172 5 1 1682 1852 109524745 109524574 1.620000e-72 283
36 TraesCS7A01G211700 chr5A 92.353 170 12 1 1681 1849 535779495 535779664 9.900000e-60 241
37 TraesCS7A01G211700 chr5A 84.659 176 21 6 1677 1849 617216741 617216569 1.320000e-38 171
38 TraesCS7A01G211700 chr4A 83.815 173 20 7 1683 1850 669666463 669666632 1.030000e-34 158
39 TraesCS7A01G211700 chr2A 84.302 172 16 10 1683 1849 487998934 487999099 1.030000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G211700 chr7A 174837848 174840612 2764 False 5107.0 5107 100.0000 1 2765 1 chr7A.!!$F1 2764
1 TraesCS7A01G211700 chr2D 118322249 118323883 1634 False 1187.5 1471 92.4520 963 2765 2 chr2D.!!$F1 1802
2 TraesCS7A01G211700 chr2D 214271349 214272885 1536 False 1122.5 1504 92.1915 1059 2765 2 chr2D.!!$F2 1706
3 TraesCS7A01G211700 chr3A 80538400 80539343 943 True 1489.0 1489 95.1320 1 945 1 chr3A.!!$R1 944
4 TraesCS7A01G211700 chr3A 607346211 607347115 904 True 1360.0 1360 93.8120 1 904 1 chr3A.!!$R4 903
5 TraesCS7A01G211700 chr3D 380840937 380842561 1624 True 1163.0 1459 92.0070 963 2765 2 chr3D.!!$R1 1802
6 TraesCS7A01G211700 chr1B 444938047 444938962 915 False 1437.0 1437 94.9780 1850 2765 1 chr1B.!!$F1 915
7 TraesCS7A01G211700 chr1B 441801405 441802104 699 True 636.0 636 83.3100 992 1682 1 chr1B.!!$R1 690
8 TraesCS7A01G211700 chr1B 441944253 441944816 563 True 569.0 569 84.9820 1120 1682 1 chr1B.!!$R2 562
9 TraesCS7A01G211700 chr2B 296754266 296755180 914 True 1308.0 1308 92.4590 1850 2764 1 chr2B.!!$R1 914
10 TraesCS7A01G211700 chr2B 302913124 302914755 1631 True 1157.5 1424 91.8630 963 2765 2 chr2B.!!$R2 1802
11 TraesCS7A01G211700 chr2B 548522496 548524113 1617 False 1055.0 1371 89.5335 963 2765 2 chr2B.!!$F1 1802
12 TraesCS7A01G211700 chr5D 475324440 475325366 926 False 1260.0 1260 91.0340 1 947 1 chr5D.!!$F1 946
13 TraesCS7A01G211700 chr5D 500388213 500389795 1582 False 1061.5 1408 90.1540 1009 2764 2 chr5D.!!$F2 1755
14 TraesCS7A01G211700 chr5D 348107198 348107880 682 True 502.5 702 92.5175 1 947 2 chr5D.!!$R1 946
15 TraesCS7A01G211700 chr7B 112108916 112109829 913 False 1328.0 1328 92.8960 1850 2764 1 chr7B.!!$F1 914
16 TraesCS7A01G211700 chr7B 183789368 183790290 922 True 1262.0 1262 91.3510 1 924 1 chr7B.!!$R3 923
17 TraesCS7A01G211700 chr7B 99226082 99226680 598 True 747.0 747 89.1670 348 947 1 chr7B.!!$R2 599
18 TraesCS7A01G211700 chr5B 621793917 621794644 727 False 745.0 745 85.3020 963 1682 1 chr5B.!!$F1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 807 0.036388 CCTTTTCTGCTACGGGCTCA 60.036 55.0 4.43 0.0 42.39 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2683 2700 0.747283 CAGGAGCAAGATGGAGTGGC 60.747 60.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.893919 GAAGCCTCCTCTGAGCCGTT 61.894 60.000 0.00 0.00 37.29 4.44
118 119 3.403558 GCCTTCCTCGGCCTCCTT 61.404 66.667 0.00 0.00 44.41 3.36
124 125 2.348998 CTCGGCCTCCTTTGCTGT 59.651 61.111 0.00 0.00 36.47 4.40
132 133 2.856222 CCTCCTTTGCTGTTGAAGACT 58.144 47.619 0.00 0.00 0.00 3.24
374 376 3.220658 TCCGTGTGCGTGGAGACA 61.221 61.111 0.00 0.00 36.15 3.41
391 393 2.799126 ACACAGTCCTGGTGTTGAAA 57.201 45.000 0.00 0.00 46.75 2.69
394 396 1.208535 ACAGTCCTGGTGTTGAAACGA 59.791 47.619 0.00 0.00 34.19 3.85
399 401 1.153329 TGGTGTTGAAACGACGCCT 60.153 52.632 18.49 0.00 45.64 5.52
408 410 2.811431 TGAAACGACGCCTGATCAATTT 59.189 40.909 0.00 0.00 0.00 1.82
415 417 3.084039 ACGCCTGATCAATTTGACACAT 58.916 40.909 0.15 0.00 0.00 3.21
431 433 3.755378 GACACATCCTCATTGCTTTGAGT 59.245 43.478 13.22 0.00 41.30 3.41
485 487 2.257371 CCGCGAACCGTCTTGAGA 59.743 61.111 8.23 0.00 34.38 3.27
551 553 4.673375 CTGGTGCCCTGCTGCCTT 62.673 66.667 0.00 0.00 0.00 4.35
552 554 3.256178 TGGTGCCCTGCTGCCTTA 61.256 61.111 0.00 0.00 0.00 2.69
650 652 1.880796 CCGTCATGCATTACCGCGA 60.881 57.895 8.23 0.00 33.35 5.87
662 664 2.424705 TACCGCGACTTTGAACCGCT 62.425 55.000 8.23 0.00 45.91 5.52
673 676 2.888998 GAACCGCTGTCGCCGTTTT 61.889 57.895 0.00 0.00 37.64 2.43
741 744 1.270358 GCTTCCTGAACCGTCTTGAGT 60.270 52.381 0.00 0.00 0.00 3.41
804 807 0.036388 CCTTTTCTGCTACGGGCTCA 60.036 55.000 4.43 0.00 42.39 4.26
818 821 1.303561 GCTCAGCCAATGTGACCCA 60.304 57.895 0.00 0.00 0.00 4.51
825 828 2.846206 AGCCAATGTGACCCATCTTCTA 59.154 45.455 0.00 0.00 31.75 2.10
947 950 4.508405 GGTGGGGATGCCAATAATAAGCTA 60.508 45.833 5.30 0.00 0.00 3.32
948 951 5.264395 GTGGGGATGCCAATAATAAGCTAT 58.736 41.667 5.30 0.00 0.00 2.97
949 952 5.716703 GTGGGGATGCCAATAATAAGCTATT 59.283 40.000 5.30 0.00 0.00 1.73
950 953 6.889722 GTGGGGATGCCAATAATAAGCTATTA 59.110 38.462 5.30 0.00 35.32 0.98
951 954 7.561356 GTGGGGATGCCAATAATAAGCTATTAT 59.439 37.037 5.30 0.00 41.75 1.28
952 955 7.560991 TGGGGATGCCAATAATAAGCTATTATG 59.439 37.037 5.30 4.95 39.71 1.90
953 956 7.561356 GGGGATGCCAATAATAAGCTATTATGT 59.439 37.037 5.30 0.00 39.71 2.29
954 957 8.408601 GGGATGCCAATAATAAGCTATTATGTG 58.591 37.037 0.00 8.58 39.71 3.21
955 958 8.408601 GGATGCCAATAATAAGCTATTATGTGG 58.591 37.037 18.02 18.02 39.71 4.17
956 959 9.177608 GATGCCAATAATAAGCTATTATGTGGA 57.822 33.333 21.53 13.75 39.71 4.02
957 960 8.565896 TGCCAATAATAAGCTATTATGTGGAG 57.434 34.615 21.53 10.10 39.71 3.86
958 961 8.382405 TGCCAATAATAAGCTATTATGTGGAGA 58.618 33.333 21.53 13.75 39.71 3.71
959 962 9.401058 GCCAATAATAAGCTATTATGTGGAGAT 57.599 33.333 21.53 5.62 39.71 2.75
985 988 1.070786 AACGGGTGATTGACAGCGT 59.929 52.632 0.00 0.00 46.51 5.07
1075 1083 1.580066 AAATCCCGCCTTCCCATCCA 61.580 55.000 0.00 0.00 0.00 3.41
1080 1088 2.440980 GCCTTCCCATCCACAGCC 60.441 66.667 0.00 0.00 0.00 4.85
1082 1090 2.671070 CTTCCCATCCACAGCCGT 59.329 61.111 0.00 0.00 0.00 5.68
1159 1173 1.008538 CTGCCAGACAAAACCGCAC 60.009 57.895 0.00 0.00 0.00 5.34
1164 1178 0.817634 CAGACAAAACCGCACAGGGA 60.818 55.000 0.00 0.00 46.96 4.20
1168 1182 0.667184 CAAAACCGCACAGGGATTGC 60.667 55.000 0.00 0.00 46.96 3.56
1171 1185 2.440796 CCGCACAGGGATTGCCAT 60.441 61.111 0.00 0.00 36.57 4.40
1182 1196 1.681780 GGATTGCCATCGGTCTTGGAA 60.682 52.381 0.00 0.00 36.26 3.53
1184 1198 0.690192 TTGCCATCGGTCTTGGAAGA 59.310 50.000 0.00 0.00 36.26 2.87
1208 1222 0.524392 CAGCTAGCGACAACGGAGAG 60.524 60.000 9.55 0.00 40.15 3.20
1239 1253 2.731572 CCTTCAGCTGATTTGGTGGAT 58.268 47.619 19.04 0.00 36.25 3.41
1279 1294 0.823356 GGCTGGTGCTGGTTTTGAGA 60.823 55.000 0.00 0.00 39.59 3.27
1285 1301 1.228552 GCTGGTTTTGAGAGGGCCA 60.229 57.895 6.18 0.00 0.00 5.36
1535 1552 0.673333 CCATGCTGCACAACTCGGTA 60.673 55.000 3.57 0.00 0.00 4.02
1563 1580 3.193691 GTGCAAGTAGCTCTAGGAAGACA 59.806 47.826 0.00 0.00 45.94 3.41
1603 1620 1.608025 CGGTGCTGCTTAGAACCTTGA 60.608 52.381 0.00 0.00 35.29 3.02
1605 1622 2.551071 GGTGCTGCTTAGAACCTTGAGT 60.551 50.000 0.00 0.00 34.59 3.41
1641 1658 1.219124 GGCAGTCTCGGAAGATGCA 59.781 57.895 9.34 0.00 40.84 3.96
1645 1662 2.417379 GCAGTCTCGGAAGATGCACTAA 60.417 50.000 0.00 0.00 40.84 2.24
1682 1699 1.816863 TTCGACTCACCACTCCAGGC 61.817 60.000 0.00 0.00 0.00 4.85
1683 1700 2.574018 CGACTCACCACTCCAGGCA 61.574 63.158 0.00 0.00 0.00 4.75
1684 1701 1.294780 GACTCACCACTCCAGGCAG 59.705 63.158 0.00 0.00 0.00 4.85
1685 1702 1.460305 ACTCACCACTCCAGGCAGT 60.460 57.895 0.00 0.00 0.00 4.40
1686 1703 1.004080 CTCACCACTCCAGGCAGTG 60.004 63.158 10.57 10.57 43.13 3.66
1695 1712 3.390521 CAGGCAGTGGCGGAGGTA 61.391 66.667 11.46 0.00 42.47 3.08
1696 1713 3.077556 AGGCAGTGGCGGAGGTAG 61.078 66.667 11.51 0.00 42.47 3.18
1697 1714 4.162690 GGCAGTGGCGGAGGTAGG 62.163 72.222 0.00 0.00 42.47 3.18
1698 1715 4.162690 GCAGTGGCGGAGGTAGGG 62.163 72.222 0.00 0.00 0.00 3.53
1699 1716 3.470888 CAGTGGCGGAGGTAGGGG 61.471 72.222 0.00 0.00 0.00 4.79
1700 1717 3.680196 AGTGGCGGAGGTAGGGGA 61.680 66.667 0.00 0.00 0.00 4.81
1701 1718 2.446036 GTGGCGGAGGTAGGGGAT 60.446 66.667 0.00 0.00 0.00 3.85
1702 1719 2.445845 TGGCGGAGGTAGGGGATG 60.446 66.667 0.00 0.00 0.00 3.51
1703 1720 3.242291 GGCGGAGGTAGGGGATGG 61.242 72.222 0.00 0.00 0.00 3.51
1704 1721 2.122989 GCGGAGGTAGGGGATGGA 60.123 66.667 0.00 0.00 0.00 3.41
1705 1722 2.508751 GCGGAGGTAGGGGATGGAC 61.509 68.421 0.00 0.00 0.00 4.02
1706 1723 1.075525 CGGAGGTAGGGGATGGACA 60.076 63.158 0.00 0.00 0.00 4.02
1707 1724 1.115930 CGGAGGTAGGGGATGGACAG 61.116 65.000 0.00 0.00 0.00 3.51
1708 1725 0.764752 GGAGGTAGGGGATGGACAGG 60.765 65.000 0.00 0.00 0.00 4.00
1709 1726 0.764752 GAGGTAGGGGATGGACAGGG 60.765 65.000 0.00 0.00 0.00 4.45
1710 1727 1.004361 GGTAGGGGATGGACAGGGT 59.996 63.158 0.00 0.00 0.00 4.34
1711 1728 1.345715 GGTAGGGGATGGACAGGGTG 61.346 65.000 0.00 0.00 0.00 4.61
1712 1729 1.004230 TAGGGGATGGACAGGGTGG 59.996 63.158 0.00 0.00 0.00 4.61
1713 1730 2.561378 TAGGGGATGGACAGGGTGGG 62.561 65.000 0.00 0.00 0.00 4.61
1714 1731 4.129148 GGGATGGACAGGGTGGGC 62.129 72.222 0.00 0.00 0.00 5.36
1715 1732 4.129148 GGATGGACAGGGTGGGCC 62.129 72.222 0.00 0.00 0.00 5.80
1716 1733 3.338250 GATGGACAGGGTGGGCCA 61.338 66.667 0.00 0.00 36.17 5.36
1717 1734 2.618185 ATGGACAGGGTGGGCCAT 60.618 61.111 10.70 0.00 33.66 4.40
1730 1747 2.123726 GCCATGGCCCACCCTAAG 60.124 66.667 27.24 0.00 33.59 2.18
1731 1748 2.689691 GCCATGGCCCACCCTAAGA 61.690 63.158 27.24 0.00 33.59 2.10
1732 1749 2.011617 GCCATGGCCCACCCTAAGAT 62.012 60.000 27.24 0.00 33.59 2.40
1733 1750 1.444933 CCATGGCCCACCCTAAGATA 58.555 55.000 0.00 0.00 33.59 1.98
1734 1751 1.995542 CCATGGCCCACCCTAAGATAT 59.004 52.381 0.00 0.00 33.59 1.63
1735 1752 2.291153 CCATGGCCCACCCTAAGATATG 60.291 54.545 0.00 0.00 33.59 1.78
1736 1753 1.444933 TGGCCCACCCTAAGATATGG 58.555 55.000 0.00 0.00 33.59 2.74
1737 1754 1.060954 TGGCCCACCCTAAGATATGGA 60.061 52.381 0.00 0.00 33.80 3.41
1738 1755 2.062636 GGCCCACCCTAAGATATGGAA 58.937 52.381 0.00 0.00 33.80 3.53
1739 1756 2.445525 GGCCCACCCTAAGATATGGAAA 59.554 50.000 0.00 0.00 33.80 3.13
1740 1757 3.076032 GGCCCACCCTAAGATATGGAAAT 59.924 47.826 0.00 0.00 33.80 2.17
1741 1758 4.291249 GGCCCACCCTAAGATATGGAAATA 59.709 45.833 0.00 0.00 33.80 1.40
1742 1759 5.501156 GCCCACCCTAAGATATGGAAATAG 58.499 45.833 0.00 0.00 33.80 1.73
1743 1760 5.501156 CCCACCCTAAGATATGGAAATAGC 58.499 45.833 0.00 0.00 33.80 2.97
1744 1761 5.501156 CCACCCTAAGATATGGAAATAGCC 58.499 45.833 0.00 0.00 33.80 3.93
1745 1762 5.251700 CCACCCTAAGATATGGAAATAGCCT 59.748 44.000 0.00 0.00 33.80 4.58
1746 1763 6.410540 CACCCTAAGATATGGAAATAGCCTC 58.589 44.000 0.00 0.00 0.00 4.70
1747 1764 6.214412 CACCCTAAGATATGGAAATAGCCTCT 59.786 42.308 0.00 0.00 0.00 3.69
1748 1765 7.400339 CACCCTAAGATATGGAAATAGCCTCTA 59.600 40.741 0.00 0.00 0.00 2.43
1749 1766 8.132285 ACCCTAAGATATGGAAATAGCCTCTAT 58.868 37.037 0.00 0.00 0.00 1.98
1750 1767 9.661954 CCCTAAGATATGGAAATAGCCTCTATA 57.338 37.037 0.00 0.00 0.00 1.31
1757 1774 9.998752 ATATGGAAATAGCCTCTATAGTACTGT 57.001 33.333 5.39 0.39 0.00 3.55
1759 1776 8.865420 TGGAAATAGCCTCTATAGTACTGTAG 57.135 38.462 18.02 18.02 0.00 2.74
1760 1777 7.393796 TGGAAATAGCCTCTATAGTACTGTAGC 59.606 40.741 19.01 10.57 0.00 3.58
1761 1778 7.393796 GGAAATAGCCTCTATAGTACTGTAGCA 59.606 40.741 19.01 9.29 0.00 3.49
1762 1779 8.887264 AAATAGCCTCTATAGTACTGTAGCAT 57.113 34.615 19.01 8.99 0.00 3.79
1763 1780 9.976776 AAATAGCCTCTATAGTACTGTAGCATA 57.023 33.333 19.01 10.49 0.00 3.14
1764 1781 9.976776 AATAGCCTCTATAGTACTGTAGCATAA 57.023 33.333 19.01 4.20 0.00 1.90
1765 1782 9.976776 ATAGCCTCTATAGTACTGTAGCATAAA 57.023 33.333 19.01 7.31 0.00 1.40
1766 1783 8.343168 AGCCTCTATAGTACTGTAGCATAAAG 57.657 38.462 19.01 11.83 30.13 1.85
1767 1784 7.394923 AGCCTCTATAGTACTGTAGCATAAAGG 59.605 40.741 19.01 19.09 26.98 3.11
1768 1785 7.540299 CCTCTATAGTACTGTAGCATAAAGGC 58.460 42.308 19.01 0.00 26.98 4.35
1769 1786 7.363094 CCTCTATAGTACTGTAGCATAAAGGCC 60.363 44.444 19.01 0.00 26.98 5.19
1770 1787 7.008332 TCTATAGTACTGTAGCATAAAGGCCA 58.992 38.462 19.01 0.00 26.98 5.36
1771 1788 4.837093 AGTACTGTAGCATAAAGGCCAA 57.163 40.909 5.01 0.00 26.98 4.52
1772 1789 5.174037 AGTACTGTAGCATAAAGGCCAAA 57.826 39.130 5.01 0.00 26.98 3.28
1773 1790 5.566469 AGTACTGTAGCATAAAGGCCAAAA 58.434 37.500 5.01 0.00 26.98 2.44
1774 1791 6.007703 AGTACTGTAGCATAAAGGCCAAAAA 58.992 36.000 5.01 0.00 26.98 1.94
1775 1792 6.663523 AGTACTGTAGCATAAAGGCCAAAAAT 59.336 34.615 5.01 0.00 26.98 1.82
1776 1793 7.832187 AGTACTGTAGCATAAAGGCCAAAAATA 59.168 33.333 5.01 0.00 26.98 1.40
1777 1794 7.100458 ACTGTAGCATAAAGGCCAAAAATAG 57.900 36.000 5.01 0.00 26.98 1.73
1778 1795 6.889722 ACTGTAGCATAAAGGCCAAAAATAGA 59.110 34.615 5.01 0.00 26.98 1.98
1779 1796 7.396055 ACTGTAGCATAAAGGCCAAAAATAGAA 59.604 33.333 5.01 0.00 26.98 2.10
1780 1797 7.771183 TGTAGCATAAAGGCCAAAAATAGAAG 58.229 34.615 5.01 0.00 0.00 2.85
1781 1798 7.613801 TGTAGCATAAAGGCCAAAAATAGAAGA 59.386 33.333 5.01 0.00 0.00 2.87
1782 1799 7.480760 AGCATAAAGGCCAAAAATAGAAGAA 57.519 32.000 5.01 0.00 0.00 2.52
1783 1800 7.906327 AGCATAAAGGCCAAAAATAGAAGAAA 58.094 30.769 5.01 0.00 0.00 2.52
1784 1801 8.374743 AGCATAAAGGCCAAAAATAGAAGAAAA 58.625 29.630 5.01 0.00 0.00 2.29
1785 1802 8.659491 GCATAAAGGCCAAAAATAGAAGAAAAG 58.341 33.333 5.01 0.00 0.00 2.27
1786 1803 9.927668 CATAAAGGCCAAAAATAGAAGAAAAGA 57.072 29.630 5.01 0.00 0.00 2.52
1819 1836 6.709018 ATGTAAATTACACTATTGGCCCAC 57.291 37.500 8.12 0.00 42.23 4.61
1820 1837 4.951094 TGTAAATTACACTATTGGCCCACC 59.049 41.667 0.00 0.00 32.89 4.61
1821 1838 2.748209 ATTACACTATTGGCCCACCC 57.252 50.000 0.00 0.00 33.59 4.61
1822 1839 1.676248 TTACACTATTGGCCCACCCT 58.324 50.000 0.00 0.00 33.59 4.34
1823 1840 0.916086 TACACTATTGGCCCACCCTG 59.084 55.000 0.00 0.00 33.59 4.45
1824 1841 1.076777 CACTATTGGCCCACCCTGG 60.077 63.158 0.00 0.00 37.25 4.45
1842 1859 3.470888 CCCAGTGGGCTAGGTCCG 61.471 72.222 17.33 0.00 35.35 4.79
1843 1860 4.162690 CCAGTGGGCTAGGTCCGC 62.163 72.222 0.00 0.00 38.20 5.54
1844 1861 4.162690 CAGTGGGCTAGGTCCGCC 62.163 72.222 0.00 0.00 46.83 6.13
1876 1893 2.361610 CCGCAGTTGAGGGCCATT 60.362 61.111 6.18 0.00 0.00 3.16
2045 2062 3.869065 TGGAATGTTAGAGGCCTTAACG 58.131 45.455 22.11 0.00 0.00 3.18
2165 2182 0.325860 AATCCTGCAATGCATGGGGT 60.326 50.000 8.91 0.00 38.13 4.95
2254 2271 1.372997 CACACGGGTCCTCTTGTCG 60.373 63.158 0.00 0.00 0.00 4.35
2450 2467 3.904800 TCAACCTCATCCTTTATGCGA 57.095 42.857 0.00 0.00 35.38 5.10
2593 2610 0.108585 AGACACCCACGCTCACAAAT 59.891 50.000 0.00 0.00 0.00 2.32
2629 2646 2.304761 TGTTTCCGTAGATTGGGAGCTT 59.695 45.455 0.00 0.00 33.01 3.74
2635 2652 2.158900 CGTAGATTGGGAGCTTGACCAT 60.159 50.000 6.57 0.00 36.48 3.55
2683 2700 0.877649 CCGAGCACTCCGATCATTGG 60.878 60.000 0.00 0.00 0.00 3.16
2700 2717 1.452833 GGCCACTCCATCTTGCTCC 60.453 63.158 0.00 0.00 34.01 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.325661 TGGAGAAGACACCCATCTCA 57.674 50.000 4.61 0.00 41.06 3.27
42 43 2.171448 GCTCAGAGGAGGCTTCCATAAA 59.829 50.000 18.32 0.00 46.64 1.40
67 68 2.722094 AGAAGTGGCGAATTATGGCAA 58.278 42.857 7.83 0.00 44.01 4.52
118 119 1.785041 GCGCCAGTCTTCAACAGCAA 61.785 55.000 0.00 0.00 31.59 3.91
124 125 4.697756 CCCGGCGCCAGTCTTCAA 62.698 66.667 28.98 0.00 0.00 2.69
289 290 2.068821 AGATGTGGCTCGGATGGCT 61.069 57.895 0.00 0.00 0.00 4.75
374 376 1.208535 TCGTTTCAACACCAGGACTGT 59.791 47.619 0.00 0.00 0.00 3.55
391 393 1.732259 GTCAAATTGATCAGGCGTCGT 59.268 47.619 0.00 0.00 0.00 4.34
394 396 2.503331 TGTGTCAAATTGATCAGGCGT 58.497 42.857 0.00 0.00 0.00 5.68
399 401 6.626402 GCAATGAGGATGTGTCAAATTGATCA 60.626 38.462 0.00 2.79 0.00 2.92
408 410 3.753815 TCAAAGCAATGAGGATGTGTCA 58.246 40.909 0.00 0.00 0.00 3.58
485 487 0.822164 AACGTAGGAAGCGGCTGTAT 59.178 50.000 1.81 0.00 0.00 2.29
562 564 3.286751 GCTGTGAAGGCAACGGCA 61.287 61.111 12.26 0.00 43.71 5.69
650 652 2.251642 GGCGACAGCGGTTCAAAGT 61.252 57.895 0.00 0.00 46.35 2.66
673 676 0.259647 CCCAGGGCATCATGAGGAAA 59.740 55.000 12.39 0.00 0.00 3.13
741 744 2.045242 ACTGGAGACTCGCGGCTA 60.045 61.111 6.13 0.00 0.00 3.93
804 807 1.637553 AGAAGATGGGTCACATTGGCT 59.362 47.619 0.00 0.00 40.72 4.75
818 821 3.365472 GGTGGGGCAACAATTAGAAGAT 58.635 45.455 0.00 0.00 39.74 2.40
825 828 0.039618 AGATCGGTGGGGCAACAATT 59.960 50.000 0.00 0.00 39.74 2.32
947 950 4.745125 CGTTGCGAGTTATCTCCACATAAT 59.255 41.667 0.00 0.00 37.40 1.28
948 951 4.109766 CGTTGCGAGTTATCTCCACATAA 58.890 43.478 0.00 0.00 37.40 1.90
949 952 3.490249 CCGTTGCGAGTTATCTCCACATA 60.490 47.826 0.00 0.00 37.40 2.29
950 953 2.540515 CGTTGCGAGTTATCTCCACAT 58.459 47.619 0.00 0.00 37.40 3.21
951 954 1.403647 CCGTTGCGAGTTATCTCCACA 60.404 52.381 0.00 0.00 37.40 4.17
952 955 1.278238 CCGTTGCGAGTTATCTCCAC 58.722 55.000 0.00 0.00 37.40 4.02
953 956 0.174845 CCCGTTGCGAGTTATCTCCA 59.825 55.000 0.00 0.00 37.40 3.86
954 957 0.175073 ACCCGTTGCGAGTTATCTCC 59.825 55.000 0.00 0.00 37.40 3.71
955 958 1.135199 TCACCCGTTGCGAGTTATCTC 60.135 52.381 0.00 0.00 37.35 2.75
956 959 0.892755 TCACCCGTTGCGAGTTATCT 59.107 50.000 0.00 0.00 0.00 1.98
957 960 1.935933 ATCACCCGTTGCGAGTTATC 58.064 50.000 0.00 0.00 0.00 1.75
958 961 2.006888 CAATCACCCGTTGCGAGTTAT 58.993 47.619 0.00 0.00 0.00 1.89
959 962 1.001068 TCAATCACCCGTTGCGAGTTA 59.999 47.619 0.00 0.00 0.00 2.24
960 963 0.250124 TCAATCACCCGTTGCGAGTT 60.250 50.000 0.00 0.00 0.00 3.01
961 964 0.949105 GTCAATCACCCGTTGCGAGT 60.949 55.000 0.00 0.00 0.00 4.18
985 988 0.550432 TCCATGGGATCCGCAAATCA 59.450 50.000 13.02 0.00 0.00 2.57
1066 1071 0.608035 GAAACGGCTGTGGATGGGAA 60.608 55.000 0.00 0.00 0.00 3.97
1159 1173 0.107017 AAGACCGATGGCAATCCCTG 60.107 55.000 0.00 0.00 0.00 4.45
1164 1178 1.281867 TCTTCCAAGACCGATGGCAAT 59.718 47.619 0.00 0.00 37.88 3.56
1168 1182 0.539051 AGCTCTTCCAAGACCGATGG 59.461 55.000 0.00 0.00 39.41 3.51
1171 1185 1.293498 GCAGCTCTTCCAAGACCGA 59.707 57.895 0.00 0.00 0.00 4.69
1239 1253 0.105862 CCTGTATACTGGGACCCGGA 60.106 60.000 27.13 8.13 33.36 5.14
1377 1394 8.400947 GCTGCAATTTCTTTCACAGATAGATTA 58.599 33.333 0.00 0.00 0.00 1.75
1388 1405 2.396601 CAAGCGCTGCAATTTCTTTCA 58.603 42.857 12.58 0.00 0.00 2.69
1446 1463 4.626081 AGAAGCGGCGGTGCAAGT 62.626 61.111 20.60 0.00 37.31 3.16
1452 1469 3.302347 CTCCTTGAGAAGCGGCGGT 62.302 63.158 5.44 5.44 0.00 5.68
1535 1552 0.962489 AGAGCTACTTGCACAGACGT 59.038 50.000 0.00 0.00 45.94 4.34
1563 1580 2.697147 TTTCAGCTGCCGAGGCCTTT 62.697 55.000 6.77 0.00 41.09 3.11
1603 1620 3.433314 GCCAGATCATCACAATCCAGACT 60.433 47.826 0.00 0.00 0.00 3.24
1605 1622 2.506644 TGCCAGATCATCACAATCCAGA 59.493 45.455 0.00 0.00 0.00 3.86
1641 1658 2.748532 GACTGTACGGAGCTGACTTAGT 59.251 50.000 9.17 0.00 0.00 2.24
1645 1662 1.813786 GAAGACTGTACGGAGCTGACT 59.186 52.381 9.17 0.00 0.00 3.41
1682 1699 3.470888 CCCCTACCTCCGCCACTG 61.471 72.222 0.00 0.00 0.00 3.66
1683 1700 3.023045 ATCCCCTACCTCCGCCACT 62.023 63.158 0.00 0.00 0.00 4.00
1684 1701 2.446036 ATCCCCTACCTCCGCCAC 60.446 66.667 0.00 0.00 0.00 5.01
1685 1702 2.445845 CATCCCCTACCTCCGCCA 60.446 66.667 0.00 0.00 0.00 5.69
1686 1703 3.242291 CCATCCCCTACCTCCGCC 61.242 72.222 0.00 0.00 0.00 6.13
1687 1704 2.122989 TCCATCCCCTACCTCCGC 60.123 66.667 0.00 0.00 0.00 5.54
1688 1705 1.075525 TGTCCATCCCCTACCTCCG 60.076 63.158 0.00 0.00 0.00 4.63
1689 1706 0.764752 CCTGTCCATCCCCTACCTCC 60.765 65.000 0.00 0.00 0.00 4.30
1690 1707 0.764752 CCCTGTCCATCCCCTACCTC 60.765 65.000 0.00 0.00 0.00 3.85
1691 1708 1.318380 CCCTGTCCATCCCCTACCT 59.682 63.158 0.00 0.00 0.00 3.08
1692 1709 1.004361 ACCCTGTCCATCCCCTACC 59.996 63.158 0.00 0.00 0.00 3.18
1693 1710 1.345715 CCACCCTGTCCATCCCCTAC 61.346 65.000 0.00 0.00 0.00 3.18
1694 1711 1.004230 CCACCCTGTCCATCCCCTA 59.996 63.158 0.00 0.00 0.00 3.53
1695 1712 2.286425 CCACCCTGTCCATCCCCT 60.286 66.667 0.00 0.00 0.00 4.79
1696 1713 3.420482 CCCACCCTGTCCATCCCC 61.420 72.222 0.00 0.00 0.00 4.81
1697 1714 4.129148 GCCCACCCTGTCCATCCC 62.129 72.222 0.00 0.00 0.00 3.85
1698 1715 4.129148 GGCCCACCCTGTCCATCC 62.129 72.222 0.00 0.00 0.00 3.51
1699 1716 2.693871 ATGGCCCACCCTGTCCATC 61.694 63.158 0.00 0.00 34.43 3.51
1700 1717 2.618185 ATGGCCCACCCTGTCCAT 60.618 61.111 0.00 0.00 34.68 3.41
1701 1718 3.660571 CATGGCCCACCCTGTCCA 61.661 66.667 0.00 0.00 33.59 4.02
1702 1719 4.447342 CCATGGCCCACCCTGTCC 62.447 72.222 0.00 0.00 33.59 4.02
1713 1730 2.011617 ATCTTAGGGTGGGCCATGGC 62.012 60.000 29.47 29.47 41.06 4.40
1714 1731 1.444933 TATCTTAGGGTGGGCCATGG 58.555 55.000 10.70 7.63 36.17 3.66
1715 1732 2.291153 CCATATCTTAGGGTGGGCCATG 60.291 54.545 10.70 0.00 36.17 3.66
1716 1733 1.995542 CCATATCTTAGGGTGGGCCAT 59.004 52.381 10.70 0.00 36.17 4.40
1717 1734 1.060954 TCCATATCTTAGGGTGGGCCA 60.061 52.381 0.00 0.00 36.17 5.36
1718 1735 1.742308 TCCATATCTTAGGGTGGGCC 58.258 55.000 0.00 0.00 32.58 5.80
1719 1736 3.876309 TTTCCATATCTTAGGGTGGGC 57.124 47.619 0.00 0.00 32.58 5.36
1720 1737 5.501156 GCTATTTCCATATCTTAGGGTGGG 58.499 45.833 0.00 0.00 32.58 4.61
1721 1738 5.251700 AGGCTATTTCCATATCTTAGGGTGG 59.748 44.000 0.00 0.00 0.00 4.61
1722 1739 6.214412 AGAGGCTATTTCCATATCTTAGGGTG 59.786 42.308 0.00 0.00 0.00 4.61
1723 1740 6.335115 AGAGGCTATTTCCATATCTTAGGGT 58.665 40.000 0.00 0.00 0.00 4.34
1724 1741 6.882768 AGAGGCTATTTCCATATCTTAGGG 57.117 41.667 0.00 0.00 0.00 3.53
1731 1748 9.998752 ACAGTACTATAGAGGCTATTTCCATAT 57.001 33.333 6.78 0.00 0.00 1.78
1733 1750 9.469097 CTACAGTACTATAGAGGCTATTTCCAT 57.531 37.037 6.78 0.00 0.00 3.41
1734 1751 7.393796 GCTACAGTACTATAGAGGCTATTTCCA 59.606 40.741 12.46 0.00 0.00 3.53
1735 1752 7.393796 TGCTACAGTACTATAGAGGCTATTTCC 59.606 40.741 12.46 0.00 0.00 3.13
1736 1753 8.338072 TGCTACAGTACTATAGAGGCTATTTC 57.662 38.462 12.46 0.00 0.00 2.17
1737 1754 8.887264 ATGCTACAGTACTATAGAGGCTATTT 57.113 34.615 12.46 0.00 0.00 1.40
1738 1755 9.976776 TTATGCTACAGTACTATAGAGGCTATT 57.023 33.333 12.46 0.00 0.00 1.73
1739 1756 9.976776 TTTATGCTACAGTACTATAGAGGCTAT 57.023 33.333 12.46 1.18 0.00 2.97
1740 1757 9.451002 CTTTATGCTACAGTACTATAGAGGCTA 57.549 37.037 12.46 0.00 0.00 3.93
1741 1758 7.394923 CCTTTATGCTACAGTACTATAGAGGCT 59.605 40.741 12.46 0.00 0.00 4.58
1742 1759 7.540299 CCTTTATGCTACAGTACTATAGAGGC 58.460 42.308 12.46 0.00 0.00 4.70
1743 1760 7.363094 GGCCTTTATGCTACAGTACTATAGAGG 60.363 44.444 12.46 12.20 31.98 3.69
1744 1761 7.176865 TGGCCTTTATGCTACAGTACTATAGAG 59.823 40.741 12.46 3.29 0.00 2.43
1745 1762 7.008332 TGGCCTTTATGCTACAGTACTATAGA 58.992 38.462 12.46 0.00 0.00 1.98
1746 1763 7.228314 TGGCCTTTATGCTACAGTACTATAG 57.772 40.000 3.32 3.68 0.00 1.31
1747 1764 7.606135 TTGGCCTTTATGCTACAGTACTATA 57.394 36.000 3.32 0.00 0.00 1.31
1748 1765 6.494666 TTGGCCTTTATGCTACAGTACTAT 57.505 37.500 3.32 0.00 0.00 2.12
1749 1766 5.943349 TTGGCCTTTATGCTACAGTACTA 57.057 39.130 3.32 0.00 0.00 1.82
1750 1767 4.837093 TTGGCCTTTATGCTACAGTACT 57.163 40.909 3.32 0.00 0.00 2.73
1751 1768 5.890424 TTTTGGCCTTTATGCTACAGTAC 57.110 39.130 3.32 0.00 0.00 2.73
1752 1769 8.050325 TCTATTTTTGGCCTTTATGCTACAGTA 58.950 33.333 3.32 0.00 0.00 2.74
1753 1770 6.889722 TCTATTTTTGGCCTTTATGCTACAGT 59.110 34.615 3.32 0.00 0.00 3.55
1754 1771 7.333528 TCTATTTTTGGCCTTTATGCTACAG 57.666 36.000 3.32 0.00 0.00 2.74
1755 1772 7.613801 TCTTCTATTTTTGGCCTTTATGCTACA 59.386 33.333 3.32 0.00 0.00 2.74
1756 1773 7.996385 TCTTCTATTTTTGGCCTTTATGCTAC 58.004 34.615 3.32 0.00 0.00 3.58
1757 1774 8.588290 TTCTTCTATTTTTGGCCTTTATGCTA 57.412 30.769 3.32 0.00 0.00 3.49
1758 1775 7.480760 TTCTTCTATTTTTGGCCTTTATGCT 57.519 32.000 3.32 0.00 0.00 3.79
1759 1776 8.546597 TTTTCTTCTATTTTTGGCCTTTATGC 57.453 30.769 3.32 0.00 0.00 3.14
1760 1777 9.927668 TCTTTTCTTCTATTTTTGGCCTTTATG 57.072 29.630 3.32 0.00 0.00 1.90
1793 1810 9.509956 GTGGGCCAATAGTGTAATTTACATATA 57.490 33.333 8.40 9.07 41.34 0.86
1794 1811 7.450323 GGTGGGCCAATAGTGTAATTTACATAT 59.550 37.037 8.40 7.34 36.46 1.78
1795 1812 6.773685 GGTGGGCCAATAGTGTAATTTACATA 59.226 38.462 8.40 6.79 36.46 2.29
1796 1813 5.596772 GGTGGGCCAATAGTGTAATTTACAT 59.403 40.000 8.40 5.03 36.46 2.29
1797 1814 4.951094 GGTGGGCCAATAGTGTAATTTACA 59.049 41.667 8.40 5.14 33.49 2.41
1798 1815 4.340097 GGGTGGGCCAATAGTGTAATTTAC 59.660 45.833 8.40 0.00 36.17 2.01
1799 1816 4.230964 AGGGTGGGCCAATAGTGTAATTTA 59.769 41.667 8.40 0.00 36.17 1.40
1800 1817 3.012388 AGGGTGGGCCAATAGTGTAATTT 59.988 43.478 8.40 0.00 36.17 1.82
1801 1818 2.585432 AGGGTGGGCCAATAGTGTAATT 59.415 45.455 8.40 0.00 36.17 1.40
1802 1819 2.091885 CAGGGTGGGCCAATAGTGTAAT 60.092 50.000 8.40 0.00 36.17 1.89
1803 1820 1.283613 CAGGGTGGGCCAATAGTGTAA 59.716 52.381 8.40 0.00 36.17 2.41
1804 1821 0.916086 CAGGGTGGGCCAATAGTGTA 59.084 55.000 8.40 0.00 36.17 2.90
1805 1822 1.691219 CAGGGTGGGCCAATAGTGT 59.309 57.895 8.40 0.00 36.17 3.55
1806 1823 1.076777 CCAGGGTGGGCCAATAGTG 60.077 63.158 8.40 3.38 36.17 2.74
1807 1824 3.426917 CCAGGGTGGGCCAATAGT 58.573 61.111 8.40 0.00 36.17 2.12
1826 1843 4.162690 GCGGACCTAGCCCACTGG 62.163 72.222 0.00 0.00 0.00 4.00
1833 1850 2.184579 GTCAGTGGCGGACCTAGC 59.815 66.667 0.00 0.00 36.63 3.42
1834 1851 1.668101 GGAGTCAGTGGCGGACCTAG 61.668 65.000 0.00 0.00 35.89 3.02
1835 1852 1.681327 GGAGTCAGTGGCGGACCTA 60.681 63.158 0.00 0.00 35.89 3.08
1836 1853 2.997897 GGAGTCAGTGGCGGACCT 60.998 66.667 0.00 0.00 35.89 3.85
1837 1854 3.302347 CTGGAGTCAGTGGCGGACC 62.302 68.421 0.00 0.00 35.89 4.46
1838 1855 2.262915 CTGGAGTCAGTGGCGGAC 59.737 66.667 0.00 0.00 36.30 4.79
1839 1856 2.997315 CCTGGAGTCAGTGGCGGA 60.997 66.667 0.00 0.00 39.31 5.54
1840 1857 2.997315 TCCTGGAGTCAGTGGCGG 60.997 66.667 0.00 0.00 39.31 6.13
1841 1858 2.575993 CTCCTGGAGTCAGTGGCG 59.424 66.667 15.76 0.00 39.31 5.69
1842 1859 2.267324 GCTCCTGGAGTCAGTGGC 59.733 66.667 23.92 5.84 39.31 5.01
1843 1860 2.985456 GGCTCCTGGAGTCAGTGG 59.015 66.667 22.99 0.00 39.31 4.00
1844 1861 2.575993 CGGCTCCTGGAGTCAGTG 59.424 66.667 26.56 8.13 39.31 3.66
1845 1862 3.386237 GCGGCTCCTGGAGTCAGT 61.386 66.667 26.56 0.00 39.31 3.41
1846 1863 3.368190 CTGCGGCTCCTGGAGTCAG 62.368 68.421 26.56 22.73 33.34 3.51
1847 1864 3.385384 CTGCGGCTCCTGGAGTCA 61.385 66.667 26.56 18.53 33.34 3.41
1848 1865 2.948720 AACTGCGGCTCCTGGAGTC 61.949 63.158 23.92 21.29 36.98 3.36
1876 1893 1.441729 CTTCCCGAAGATAGCCGCA 59.558 57.895 0.00 0.00 40.79 5.69
2045 2062 1.977009 CCTTCCTTTTGGCCGGACC 60.977 63.158 3.83 6.37 40.12 4.46
2140 2157 4.116961 CCATGCATTGCAGGATTACAAAG 58.883 43.478 23.76 1.46 43.36 2.77
2150 2167 1.314534 TTCGACCCCATGCATTGCAG 61.315 55.000 17.52 8.97 43.65 4.41
2165 2182 6.931838 AGTAAGTGAAACCATCATAGTTCGA 58.068 36.000 0.00 0.00 40.97 3.71
2254 2271 6.712095 TGCTATGGGAGTCATTGACATAATTC 59.288 38.462 18.57 6.96 37.30 2.17
2314 2331 4.501571 CCATATACTACTGTGAGCCACCAC 60.502 50.000 3.33 0.00 37.55 4.16
2450 2467 6.657541 TCCAAGTTAGAGTTGTTTTTGTCTGT 59.342 34.615 0.00 0.00 0.00 3.41
2593 2610 2.481185 GGAAACAAAAGCACGGTCGATA 59.519 45.455 0.00 0.00 0.00 2.92
2629 2646 1.296392 CAAGCACTCCGGATGGTCA 59.704 57.895 3.57 0.00 36.30 4.02
2683 2700 0.747283 CAGGAGCAAGATGGAGTGGC 60.747 60.000 0.00 0.00 0.00 5.01
2700 2717 1.725557 GGCATGCATGTGCTCCTCAG 61.726 60.000 26.79 0.00 44.45 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.