Multiple sequence alignment - TraesCS7A01G211600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G211600 chr7A 100.000 4772 0 0 1 4772 174692323 174697094 0.000000e+00 8813.0
1 TraesCS7A01G211600 chr7A 98.134 536 9 1 1 536 289122071 289121537 0.000000e+00 933.0
2 TraesCS7A01G211600 chr7A 97.940 534 10 1 1 534 647039509 647038977 0.000000e+00 924.0
3 TraesCS7A01G211600 chr7A 97.584 538 11 2 1 538 350360547 350361082 0.000000e+00 920.0
4 TraesCS7A01G211600 chr7A 93.529 170 8 2 3873 4040 174696029 174696197 2.850000e-62 250.0
5 TraesCS7A01G211600 chr7A 93.529 170 8 2 3707 3875 174696195 174696362 2.850000e-62 250.0
6 TraesCS7A01G211600 chr7A 96.970 33 0 1 3986 4018 174695935 174695966 2.000000e-03 54.7
7 TraesCS7A01G211600 chr7A 96.970 33 0 1 3613 3644 174696308 174696340 2.000000e-03 54.7
8 TraesCS7A01G211600 chr7D 96.183 3353 101 16 535 3874 171744198 171747536 0.000000e+00 5457.0
9 TraesCS7A01G211600 chr7D 92.400 500 29 6 3873 4366 171747366 171747862 0.000000e+00 704.0
10 TraesCS7A01G211600 chr7D 91.617 167 12 2 4395 4559 185760505 185760339 3.710000e-56 230.0
11 TraesCS7A01G211600 chr7D 92.500 160 10 2 4399 4556 156825309 156825150 1.340000e-55 228.0
12 TraesCS7A01G211600 chr7D 96.970 33 0 1 3986 4018 171747272 171747303 2.000000e-03 54.7
13 TraesCS7A01G211600 chr7B 96.534 2164 68 5 535 2691 138126008 138128171 0.000000e+00 3574.0
14 TraesCS7A01G211600 chr7B 94.588 1201 52 9 2676 3874 138128187 138129376 0.000000e+00 1845.0
15 TraesCS7A01G211600 chr7B 90.672 536 42 6 3873 4404 138129213 138129744 0.000000e+00 706.0
16 TraesCS7A01G211600 chr7B 96.970 33 0 1 3986 4018 138129119 138129150 2.000000e-03 54.7
17 TraesCS7A01G211600 chr6A 97.757 535 10 2 1 535 68269720 68270252 0.000000e+00 920.0
18 TraesCS7A01G211600 chr6A 97.757 535 11 1 1 534 92812326 92811792 0.000000e+00 920.0
19 TraesCS7A01G211600 chr3A 97.753 534 11 1 1 534 412646153 412645621 0.000000e+00 918.0
20 TraesCS7A01G211600 chr3A 97.566 534 13 0 1 534 691149956 691149423 0.000000e+00 915.0
21 TraesCS7A01G211600 chr3A 97.217 539 13 2 1 539 565509789 565510325 0.000000e+00 911.0
22 TraesCS7A01G211600 chr2A 97.575 536 13 0 1 536 4097828 4097293 0.000000e+00 918.0
23 TraesCS7A01G211600 chr2A 91.176 170 13 2 4392 4559 762151001 762150832 3.710000e-56 230.0
24 TraesCS7A01G211600 chr2A 92.025 163 11 2 4399 4559 532084808 532084646 1.340000e-55 228.0
25 TraesCS7A01G211600 chr2A 91.018 167 12 3 4392 4556 736252469 736252634 6.220000e-54 222.0
26 TraesCS7A01G211600 chr5A 85.357 280 41 0 1206 1485 605321659 605321380 1.680000e-74 291.0
27 TraesCS7A01G211600 chr1B 84.646 254 37 2 1132 1384 62077014 62076762 7.930000e-63 252.0
28 TraesCS7A01G211600 chr2D 92.547 161 10 2 4401 4559 55162134 55161974 3.710000e-56 230.0
29 TraesCS7A01G211600 chr6D 91.617 167 11 3 4392 4556 13632842 13633007 1.340000e-55 228.0
30 TraesCS7A01G211600 chr5D 92.025 163 11 2 4399 4559 3612427 3612265 1.340000e-55 228.0
31 TraesCS7A01G211600 chr1D 91.018 167 12 3 4393 4556 487901071 487901237 6.220000e-54 222.0
32 TraesCS7A01G211600 chr5B 96.154 52 2 0 4687 4738 558123829 558123778 8.510000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G211600 chr7A 174692323 174697094 4771 False 1884.480 8813 96.199600 1 4772 5 chr7A.!!$F2 4771
1 TraesCS7A01G211600 chr7A 289121537 289122071 534 True 933.000 933 98.134000 1 536 1 chr7A.!!$R1 535
2 TraesCS7A01G211600 chr7A 647038977 647039509 532 True 924.000 924 97.940000 1 534 1 chr7A.!!$R2 533
3 TraesCS7A01G211600 chr7A 350360547 350361082 535 False 920.000 920 97.584000 1 538 1 chr7A.!!$F1 537
4 TraesCS7A01G211600 chr7D 171744198 171747862 3664 False 2071.900 5457 95.184333 535 4366 3 chr7D.!!$F1 3831
5 TraesCS7A01G211600 chr7B 138126008 138129744 3736 False 1544.925 3574 94.691000 535 4404 4 chr7B.!!$F1 3869
6 TraesCS7A01G211600 chr6A 68269720 68270252 532 False 920.000 920 97.757000 1 535 1 chr6A.!!$F1 534
7 TraesCS7A01G211600 chr6A 92811792 92812326 534 True 920.000 920 97.757000 1 534 1 chr6A.!!$R1 533
8 TraesCS7A01G211600 chr3A 412645621 412646153 532 True 918.000 918 97.753000 1 534 1 chr3A.!!$R1 533
9 TraesCS7A01G211600 chr3A 691149423 691149956 533 True 915.000 915 97.566000 1 534 1 chr3A.!!$R2 533
10 TraesCS7A01G211600 chr3A 565509789 565510325 536 False 911.000 911 97.217000 1 539 1 chr3A.!!$F1 538
11 TraesCS7A01G211600 chr2A 4097293 4097828 535 True 918.000 918 97.575000 1 536 1 chr2A.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 983 0.612453 GTCTCGTCCTCCCCTCACTT 60.612 60.000 0.00 0.0 0.00 3.16 F
1026 1043 1.079266 CACTCACCTGCTGCTCTCC 60.079 63.158 0.00 0.0 0.00 3.71 F
1578 1595 1.226717 GAGGAAGCTCGTAGGTGCG 60.227 63.158 4.04 0.0 33.30 5.34 F
2735 2784 2.159393 GCCTGCGCAAATTGACTATGAA 60.159 45.455 13.05 0.0 34.03 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 2186 0.246086 CCGAGAGACAGAGCTTGCTT 59.754 55.0 0.0 0.0 0.00 3.91 R
2770 2819 0.827368 TGGCGCCTTTTTGGAACTTT 59.173 45.0 29.7 0.0 38.35 2.66 R
2771 2820 1.047801 ATGGCGCCTTTTTGGAACTT 58.952 45.0 29.7 0.0 38.35 2.66 R
3997 4050 0.107459 CTAGCTTCTGCCCCACCTTC 60.107 60.0 0.0 0.0 40.80 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 3.555956 GTCTCGTAGGCATTTGTATGTGG 59.444 47.826 0.00 0.00 34.12 4.17
205 206 5.570234 TGTGGATCATGATGACATTTGTG 57.430 39.130 14.30 0.00 34.15 3.33
260 263 8.818141 TCAAATACAAAACAAATATGCCGAAA 57.182 26.923 0.00 0.00 0.00 3.46
512 516 4.445545 CGAAAACCCGCGCTGCTC 62.446 66.667 5.56 0.00 0.00 4.26
523 527 1.308783 GCGCTGCTCCTAGGCTTTTT 61.309 55.000 2.96 0.00 0.00 1.94
553 557 4.764823 AGTGGTGTTTTGAAGAACAGTTCA 59.235 37.500 15.85 0.00 39.97 3.18
589 593 2.289565 GAAATTGAGGAGGTAAGCCGG 58.710 52.381 0.00 0.00 40.50 6.13
658 662 4.802039 TCAACGAATTATTAGGCACTCGAC 59.198 41.667 0.00 0.00 41.75 4.20
677 681 1.148310 CAGAGGCGTTACCAACACAG 58.852 55.000 0.00 0.00 43.14 3.66
718 722 9.755064 CACTTACTAGAAACCAAAATAATCACG 57.245 33.333 0.00 0.00 0.00 4.35
746 750 3.584733 ACTAATCCTGGGAAAGATGCC 57.415 47.619 8.67 0.00 37.61 4.40
788 792 2.497273 CAAGTTTATCTGGCCCCAAAGG 59.503 50.000 0.00 0.00 39.47 3.11
820 824 1.859302 ACGGAGCATCTTCTTCCTCT 58.141 50.000 0.00 0.00 33.73 3.69
965 975 1.379309 AGCCTCAGTCTCGTCCTCC 60.379 63.158 0.00 0.00 0.00 4.30
973 983 0.612453 GTCTCGTCCTCCCCTCACTT 60.612 60.000 0.00 0.00 0.00 3.16
1026 1043 1.079266 CACTCACCTGCTGCTCTCC 60.079 63.158 0.00 0.00 0.00 3.71
1405 1422 3.650950 AGCCGGCCATCCACAACT 61.651 61.111 26.15 0.00 0.00 3.16
1575 1592 1.753463 CGGGAGGAAGCTCGTAGGT 60.753 63.158 0.00 0.00 0.00 3.08
1578 1595 1.226717 GAGGAAGCTCGTAGGTGCG 60.227 63.158 4.04 0.00 33.30 5.34
1740 1757 2.601067 TTCGGGTACGCCACAGGA 60.601 61.111 4.09 0.00 40.69 3.86
1788 1805 2.262292 GTGGCGGCGTACAAGGTA 59.738 61.111 9.37 0.00 0.00 3.08
2304 2321 4.740822 GGTGCCGGGATGGTGCTT 62.741 66.667 2.18 0.00 41.21 3.91
2735 2784 2.159393 GCCTGCGCAAATTGACTATGAA 60.159 45.455 13.05 0.00 34.03 2.57
2764 2813 4.016444 TGCTACCCACAATCAAATCCTTC 58.984 43.478 0.00 0.00 0.00 3.46
2770 2819 5.014123 ACCCACAATCAAATCCTTCAGACTA 59.986 40.000 0.00 0.00 0.00 2.59
2771 2820 5.945784 CCCACAATCAAATCCTTCAGACTAA 59.054 40.000 0.00 0.00 0.00 2.24
2772 2821 6.434028 CCCACAATCAAATCCTTCAGACTAAA 59.566 38.462 0.00 0.00 0.00 1.85
2776 2825 8.787852 ACAATCAAATCCTTCAGACTAAAGTTC 58.212 33.333 0.00 0.00 0.00 3.01
2819 2868 0.947244 ACTTTCGCTGCTTGTTGGAG 59.053 50.000 0.00 0.00 37.17 3.86
2877 2926 2.022346 CGCGCACATGTGATGCTC 59.978 61.111 29.80 10.07 41.10 4.26
2878 2927 2.458610 CGCGCACATGTGATGCTCT 61.459 57.895 29.80 0.00 41.10 4.09
2879 2928 1.147557 CGCGCACATGTGATGCTCTA 61.148 55.000 29.80 0.00 41.10 2.43
2880 2929 0.580578 GCGCACATGTGATGCTCTAG 59.419 55.000 29.80 9.70 41.10 2.43
2881 2930 1.803998 GCGCACATGTGATGCTCTAGA 60.804 52.381 29.80 0.00 41.10 2.43
2882 2931 1.857217 CGCACATGTGATGCTCTAGAC 59.143 52.381 29.80 6.37 41.10 2.59
2886 2935 3.020274 ACATGTGATGCTCTAGACGACT 58.980 45.455 0.00 0.00 0.00 4.18
2887 2936 4.035675 CACATGTGATGCTCTAGACGACTA 59.964 45.833 21.64 0.00 0.00 2.59
3034 3083 4.947388 TGCCTCCAAACCAAATATGAGTAC 59.053 41.667 0.00 0.00 0.00 2.73
3035 3084 4.947388 GCCTCCAAACCAAATATGAGTACA 59.053 41.667 0.00 0.00 0.00 2.90
3037 3086 6.096846 GCCTCCAAACCAAATATGAGTACAAT 59.903 38.462 0.00 0.00 0.00 2.71
3038 3087 7.284489 GCCTCCAAACCAAATATGAGTACAATA 59.716 37.037 0.00 0.00 0.00 1.90
3069 3118 3.630312 GCTCACTCCCTTTGTGTTTTACA 59.370 43.478 0.00 0.00 36.83 2.41
3180 3229 2.520458 CACCCAAACTGGAGCCCA 59.480 61.111 0.00 0.00 40.96 5.36
3315 3364 4.373116 GTCGACCCGCAGAAGGCA 62.373 66.667 3.51 0.00 45.17 4.75
3391 3440 4.514577 CCCTGGACTACAGCGCGG 62.515 72.222 8.83 5.83 46.14 6.46
3507 3556 2.357517 AAGAAGCCGAGGCACGTG 60.358 61.111 17.18 12.28 44.88 4.49
3534 3583 1.298014 CAGGAGGGAGCTGACCAAC 59.702 63.158 6.80 0.00 0.00 3.77
3744 3793 3.558411 GAGCATGTCGTCCGCAGC 61.558 66.667 0.00 0.00 0.00 5.25
3787 3836 2.749441 GAGGAGCAGGGCAGCAAC 60.749 66.667 0.00 0.00 36.85 4.17
3809 3862 2.203480 GGCCCTGCTGGTGTTTGA 60.203 61.111 9.00 0.00 36.04 2.69
3820 3873 3.810373 CTGGTGTTTGATTTAGTCGTGC 58.190 45.455 0.00 0.00 0.00 5.34
3843 3896 5.743117 CTCAGGTTCAGGAGAAGATGAAAT 58.257 41.667 0.00 0.00 37.19 2.17
3871 3924 6.654122 GCTAGATAGCTTTGATGTAGTTTGC 58.346 40.000 4.58 0.00 45.62 3.68
3872 3925 6.481644 GCTAGATAGCTTTGATGTAGTTTGCT 59.518 38.462 4.58 0.00 45.62 3.91
3873 3926 6.674694 AGATAGCTTTGATGTAGTTTGCTG 57.325 37.500 0.00 0.00 0.00 4.41
3874 3927 5.587844 AGATAGCTTTGATGTAGTTTGCTGG 59.412 40.000 0.00 0.00 0.00 4.85
3875 3928 3.754965 AGCTTTGATGTAGTTTGCTGGA 58.245 40.909 0.00 0.00 0.00 3.86
3876 3929 4.338879 AGCTTTGATGTAGTTTGCTGGAT 58.661 39.130 0.00 0.00 0.00 3.41
3877 3930 5.500234 AGCTTTGATGTAGTTTGCTGGATA 58.500 37.500 0.00 0.00 0.00 2.59
3878 3931 6.125029 AGCTTTGATGTAGTTTGCTGGATAT 58.875 36.000 0.00 0.00 0.00 1.63
3879 3932 6.261826 AGCTTTGATGTAGTTTGCTGGATATC 59.738 38.462 0.00 0.00 0.00 1.63
3880 3933 6.038603 GCTTTGATGTAGTTTGCTGGATATCA 59.961 38.462 4.83 0.00 0.00 2.15
3881 3934 7.255381 GCTTTGATGTAGTTTGCTGGATATCAT 60.255 37.037 4.83 0.00 0.00 2.45
3882 3935 7.500720 TTGATGTAGTTTGCTGGATATCATG 57.499 36.000 4.83 0.00 0.00 3.07
3883 3936 5.999600 TGATGTAGTTTGCTGGATATCATGG 59.000 40.000 4.83 0.00 0.00 3.66
3884 3937 4.717877 TGTAGTTTGCTGGATATCATGGG 58.282 43.478 4.83 0.00 0.00 4.00
3885 3938 2.590821 AGTTTGCTGGATATCATGGGC 58.409 47.619 4.83 3.62 0.00 5.36
3886 3939 1.267806 GTTTGCTGGATATCATGGGCG 59.732 52.381 4.83 0.00 0.00 6.13
3887 3940 0.764271 TTGCTGGATATCATGGGCGA 59.236 50.000 4.83 0.31 0.00 5.54
3888 3941 0.322648 TGCTGGATATCATGGGCGAG 59.677 55.000 4.83 0.00 0.00 5.03
3889 3942 1.023513 GCTGGATATCATGGGCGAGC 61.024 60.000 4.83 0.00 0.00 5.03
3890 3943 0.738762 CTGGATATCATGGGCGAGCG 60.739 60.000 4.83 0.00 0.00 5.03
3891 3944 1.184970 TGGATATCATGGGCGAGCGA 61.185 55.000 4.83 0.00 0.00 4.93
3892 3945 0.737715 GGATATCATGGGCGAGCGAC 60.738 60.000 4.83 0.00 0.00 5.19
3893 3946 1.073216 GATATCATGGGCGAGCGACG 61.073 60.000 0.00 0.00 45.66 5.12
3894 3947 1.524008 ATATCATGGGCGAGCGACGA 61.524 55.000 0.00 0.00 45.77 4.20
3895 3948 2.130073 TATCATGGGCGAGCGACGAG 62.130 60.000 0.00 0.00 45.77 4.18
3909 3962 3.250323 CGAGCATGTCGTCCGCAG 61.250 66.667 8.84 0.00 44.20 5.18
3910 3963 3.558411 GAGCATGTCGTCCGCAGC 61.558 66.667 0.00 0.00 0.00 5.25
3923 3976 4.715523 GCAGCCCGGTTGCCTACA 62.716 66.667 15.07 0.00 33.76 2.74
3924 3977 2.746277 CAGCCCGGTTGCCTACAC 60.746 66.667 0.00 0.00 0.00 2.90
3925 3978 3.246112 AGCCCGGTTGCCTACACA 61.246 61.111 0.00 0.00 0.00 3.72
3926 3979 2.045340 GCCCGGTTGCCTACACAT 60.045 61.111 0.00 0.00 0.00 3.21
3927 3980 2.406616 GCCCGGTTGCCTACACATG 61.407 63.158 0.00 0.00 0.00 3.21
3928 3981 1.748879 CCCGGTTGCCTACACATGG 60.749 63.158 0.00 0.00 0.00 3.66
3929 3982 1.298340 CCGGTTGCCTACACATGGA 59.702 57.895 0.00 0.00 0.00 3.41
3930 3983 0.322098 CCGGTTGCCTACACATGGAA 60.322 55.000 0.00 0.00 0.00 3.53
3931 3984 1.086696 CGGTTGCCTACACATGGAAG 58.913 55.000 0.00 0.00 0.00 3.46
3932 3985 1.338674 CGGTTGCCTACACATGGAAGA 60.339 52.381 0.00 0.00 0.00 2.87
3933 3986 2.680805 CGGTTGCCTACACATGGAAGAT 60.681 50.000 0.00 0.00 0.00 2.40
3934 3987 2.684881 GGTTGCCTACACATGGAAGATG 59.315 50.000 0.00 0.00 0.00 2.90
3935 3988 3.347216 GTTGCCTACACATGGAAGATGT 58.653 45.455 0.00 0.00 0.00 3.06
3942 3995 2.706339 ACATGGAAGATGTGAGGAGC 57.294 50.000 0.00 0.00 0.00 4.70
3943 3996 1.911357 ACATGGAAGATGTGAGGAGCA 59.089 47.619 0.00 0.00 0.00 4.26
3944 3997 2.093075 ACATGGAAGATGTGAGGAGCAG 60.093 50.000 0.00 0.00 0.00 4.24
3945 3998 0.907486 TGGAAGATGTGAGGAGCAGG 59.093 55.000 0.00 0.00 0.00 4.85
3946 3999 0.179936 GGAAGATGTGAGGAGCAGGG 59.820 60.000 0.00 0.00 0.00 4.45
3947 4000 0.463474 GAAGATGTGAGGAGCAGGGC 60.463 60.000 0.00 0.00 0.00 5.19
3948 4001 1.203441 AAGATGTGAGGAGCAGGGCA 61.203 55.000 0.00 0.00 0.00 5.36
3949 4002 1.153208 GATGTGAGGAGCAGGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
3950 4003 3.341202 ATGTGAGGAGCAGGGCAGC 62.341 63.158 0.00 0.00 0.00 5.25
3951 4004 4.025858 GTGAGGAGCAGGGCAGCA 62.026 66.667 0.00 0.00 36.85 4.41
3952 4005 3.251509 TGAGGAGCAGGGCAGCAA 61.252 61.111 0.00 0.00 36.85 3.91
3953 4006 2.749441 GAGGAGCAGGGCAGCAAC 60.749 66.667 0.00 0.00 36.85 4.17
3954 4007 3.255397 AGGAGCAGGGCAGCAACT 61.255 61.111 0.00 0.00 36.85 3.16
3955 4008 2.282745 GGAGCAGGGCAGCAACTT 60.283 61.111 0.00 0.00 36.85 2.66
3956 4009 2.338785 GGAGCAGGGCAGCAACTTC 61.339 63.158 0.00 0.00 36.85 3.01
3957 4010 1.601759 GAGCAGGGCAGCAACTTCA 60.602 57.895 0.00 0.00 36.85 3.02
3958 4011 1.584380 GAGCAGGGCAGCAACTTCAG 61.584 60.000 0.00 0.00 36.85 3.02
3959 4012 2.633509 GCAGGGCAGCAACTTCAGG 61.634 63.158 0.00 0.00 0.00 3.86
3960 4013 2.282745 AGGGCAGCAACTTCAGGC 60.283 61.111 0.00 0.00 0.00 4.85
3961 4014 3.376918 GGGCAGCAACTTCAGGCC 61.377 66.667 0.00 0.00 43.86 5.19
3962 4015 3.376918 GGCAGCAACTTCAGGCCC 61.377 66.667 0.00 0.00 38.70 5.80
3963 4016 2.282745 GCAGCAACTTCAGGCCCT 60.283 61.111 0.00 0.00 0.00 5.19
3964 4017 2.633509 GCAGCAACTTCAGGCCCTG 61.634 63.158 3.69 3.69 0.00 4.45
3965 4018 2.282745 AGCAACTTCAGGCCCTGC 60.283 61.111 5.66 0.00 0.00 4.85
3966 4019 2.282745 GCAACTTCAGGCCCTGCT 60.283 61.111 5.66 0.00 0.00 4.24
3967 4020 2.633509 GCAACTTCAGGCCCTGCTG 61.634 63.158 5.66 3.48 0.00 4.41
3968 4021 1.975407 CAACTTCAGGCCCTGCTGG 60.975 63.158 5.66 1.89 37.09 4.85
3969 4022 2.464403 AACTTCAGGCCCTGCTGGT 61.464 57.895 5.66 1.48 36.04 4.00
3970 4023 2.360852 CTTCAGGCCCTGCTGGTG 60.361 66.667 5.66 0.64 36.04 4.17
3971 4024 3.177884 TTCAGGCCCTGCTGGTGT 61.178 61.111 5.66 0.00 36.04 4.16
3972 4025 2.703675 CTTCAGGCCCTGCTGGTGTT 62.704 60.000 5.66 0.00 36.04 3.32
3973 4026 2.203538 CAGGCCCTGCTGGTGTTT 60.204 61.111 9.00 0.00 36.04 2.83
3974 4027 2.203538 AGGCCCTGCTGGTGTTTG 60.204 61.111 9.00 0.00 36.04 2.93
3975 4028 2.203480 GGCCCTGCTGGTGTTTGA 60.203 61.111 9.00 0.00 36.04 2.69
3976 4029 1.607467 GGCCCTGCTGGTGTTTGAT 60.607 57.895 9.00 0.00 36.04 2.57
3977 4030 1.187567 GGCCCTGCTGGTGTTTGATT 61.188 55.000 9.00 0.00 36.04 2.57
3978 4031 0.681175 GCCCTGCTGGTGTTTGATTT 59.319 50.000 9.00 0.00 36.04 2.17
3979 4032 1.892474 GCCCTGCTGGTGTTTGATTTA 59.108 47.619 9.00 0.00 36.04 1.40
3980 4033 2.094545 GCCCTGCTGGTGTTTGATTTAG 60.095 50.000 9.00 0.00 36.04 1.85
3981 4034 3.157087 CCCTGCTGGTGTTTGATTTAGT 58.843 45.455 9.00 0.00 0.00 2.24
3982 4035 3.191371 CCCTGCTGGTGTTTGATTTAGTC 59.809 47.826 9.00 0.00 0.00 2.59
3983 4036 3.120199 CCTGCTGGTGTTTGATTTAGTCG 60.120 47.826 0.51 0.00 0.00 4.18
3984 4037 3.472652 TGCTGGTGTTTGATTTAGTCGT 58.527 40.909 0.00 0.00 0.00 4.34
3985 4038 3.249799 TGCTGGTGTTTGATTTAGTCGTG 59.750 43.478 0.00 0.00 0.00 4.35
3986 4039 3.810373 CTGGTGTTTGATTTAGTCGTGC 58.190 45.455 0.00 0.00 0.00 5.34
3987 4040 3.472652 TGGTGTTTGATTTAGTCGTGCT 58.527 40.909 0.00 0.00 0.00 4.40
3988 4041 3.496884 TGGTGTTTGATTTAGTCGTGCTC 59.503 43.478 0.00 0.00 0.00 4.26
3989 4042 3.423123 GGTGTTTGATTTAGTCGTGCTCG 60.423 47.826 0.81 0.81 38.55 5.03
3990 4043 3.183775 GTGTTTGATTTAGTCGTGCTCGT 59.816 43.478 8.17 0.00 38.33 4.18
3991 4044 3.183574 TGTTTGATTTAGTCGTGCTCGTG 59.816 43.478 8.17 0.00 38.33 4.35
3992 4045 2.717580 TGATTTAGTCGTGCTCGTGT 57.282 45.000 8.17 0.00 38.33 4.49
3993 4046 3.021269 TGATTTAGTCGTGCTCGTGTT 57.979 42.857 8.17 0.00 38.33 3.32
3994 4047 2.984471 TGATTTAGTCGTGCTCGTGTTC 59.016 45.455 8.17 0.00 38.33 3.18
3995 4048 2.495409 TTTAGTCGTGCTCGTGTTCA 57.505 45.000 8.17 0.00 38.33 3.18
3996 4049 2.495409 TTAGTCGTGCTCGTGTTCAA 57.505 45.000 8.17 0.00 38.33 2.69
3997 4050 2.046283 TAGTCGTGCTCGTGTTCAAG 57.954 50.000 8.17 0.00 38.33 3.02
3998 4051 0.384309 AGTCGTGCTCGTGTTCAAGA 59.616 50.000 8.17 0.00 38.33 3.02
3999 4052 1.202371 AGTCGTGCTCGTGTTCAAGAA 60.202 47.619 8.17 0.00 38.33 2.52
4000 4053 1.190323 GTCGTGCTCGTGTTCAAGAAG 59.810 52.381 8.17 0.00 38.33 2.85
4001 4054 0.508641 CGTGCTCGTGTTCAAGAAGG 59.491 55.000 0.00 0.00 0.00 3.46
4002 4055 1.583054 GTGCTCGTGTTCAAGAAGGT 58.417 50.000 0.00 0.00 0.00 3.50
4003 4056 1.261619 GTGCTCGTGTTCAAGAAGGTG 59.738 52.381 0.00 0.00 0.00 4.00
4004 4057 0.868406 GCTCGTGTTCAAGAAGGTGG 59.132 55.000 0.00 0.00 0.00 4.61
4005 4058 1.512926 CTCGTGTTCAAGAAGGTGGG 58.487 55.000 0.00 0.00 0.00 4.61
4006 4059 0.107831 TCGTGTTCAAGAAGGTGGGG 59.892 55.000 0.00 0.00 0.00 4.96
4007 4060 1.515521 CGTGTTCAAGAAGGTGGGGC 61.516 60.000 0.00 0.00 0.00 5.80
4008 4061 0.467290 GTGTTCAAGAAGGTGGGGCA 60.467 55.000 0.00 0.00 0.00 5.36
4009 4062 0.178992 TGTTCAAGAAGGTGGGGCAG 60.179 55.000 0.00 0.00 0.00 4.85
4010 4063 0.110486 GTTCAAGAAGGTGGGGCAGA 59.890 55.000 0.00 0.00 0.00 4.26
4011 4064 0.850100 TTCAAGAAGGTGGGGCAGAA 59.150 50.000 0.00 0.00 0.00 3.02
4012 4065 0.401738 TCAAGAAGGTGGGGCAGAAG 59.598 55.000 0.00 0.00 0.00 2.85
4013 4066 1.075659 AAGAAGGTGGGGCAGAAGC 59.924 57.895 0.00 0.00 41.10 3.86
4014 4067 1.430369 AAGAAGGTGGGGCAGAAGCT 61.430 55.000 0.00 0.00 41.70 3.74
4015 4068 0.547712 AGAAGGTGGGGCAGAAGCTA 60.548 55.000 0.00 0.00 41.70 3.32
4016 4069 0.107459 GAAGGTGGGGCAGAAGCTAG 60.107 60.000 0.00 0.00 41.70 3.42
4017 4070 0.547712 AAGGTGGGGCAGAAGCTAGA 60.548 55.000 0.00 0.00 41.70 2.43
4018 4071 0.327000 AGGTGGGGCAGAAGCTAGAT 60.327 55.000 0.00 0.00 41.70 1.98
4019 4072 1.062121 AGGTGGGGCAGAAGCTAGATA 60.062 52.381 0.00 0.00 41.70 1.98
4020 4073 1.346068 GGTGGGGCAGAAGCTAGATAG 59.654 57.143 0.00 0.00 41.70 2.08
4039 4092 5.587844 AGATAGCTTTGATGTAGTTTGCTGG 59.412 40.000 0.00 0.00 0.00 4.85
4131 4184 0.942252 GACTCGCCGGACTTTGTTTT 59.058 50.000 5.05 0.00 0.00 2.43
4179 4232 2.945615 GCTTGTGCGCCGTTAACGA 61.946 57.895 28.79 6.28 43.02 3.85
4196 4250 7.042791 CCGTTAACGAGTGAGGTTTAAGTTTTA 60.043 37.037 28.79 0.00 43.02 1.52
4225 4279 2.543848 TCTAGTTCTGTGTTTGCAAGCG 59.456 45.455 8.84 0.00 0.00 4.68
4329 4383 6.202188 GCTCCTGAATTAATGCAAAATGATGG 59.798 38.462 0.00 0.00 0.00 3.51
4340 4394 6.507958 TGCAAAATGATGGAAAGATCGTTA 57.492 33.333 0.00 0.00 32.36 3.18
4362 4416 5.526506 AGAATTTCTCTTGGGCAATATGC 57.473 39.130 0.00 0.00 44.08 3.14
4366 4420 3.370840 TCTCTTGGGCAATATGCTTGT 57.629 42.857 2.00 0.00 44.28 3.16
4369 4423 4.158394 TCTCTTGGGCAATATGCTTGTTTC 59.842 41.667 2.00 0.00 44.28 2.78
4376 4430 3.301642 GCAATATGCTTGTTTCGAACTGC 59.698 43.478 0.00 0.48 40.96 4.40
4400 4456 4.799564 TGTTTGAACCAGCTTGTTCTTT 57.200 36.364 25.85 0.00 43.96 2.52
4425 4481 6.911250 TTTTTAGAAAAAGAGGATGACCCC 57.089 37.500 0.00 0.00 33.29 4.95
4426 4482 2.789409 AGAAAAAGAGGATGACCCCG 57.211 50.000 0.00 0.00 36.73 5.73
4427 4483 1.282157 AGAAAAAGAGGATGACCCCGG 59.718 52.381 0.00 0.00 36.73 5.73
4428 4484 0.323451 AAAAAGAGGATGACCCCGGC 60.323 55.000 0.00 0.00 36.73 6.13
4429 4485 2.211468 AAAAGAGGATGACCCCGGCC 62.211 60.000 0.00 0.00 36.73 6.13
4430 4486 3.642741 AAGAGGATGACCCCGGCCT 62.643 63.158 0.00 0.00 36.73 5.19
4431 4487 3.551407 GAGGATGACCCCGGCCTC 61.551 72.222 7.66 7.66 40.04 4.70
4432 4488 4.414956 AGGATGACCCCGGCCTCA 62.415 66.667 0.00 0.00 36.73 3.86
4433 4489 4.176752 GGATGACCCCGGCCTCAC 62.177 72.222 0.00 0.00 0.00 3.51
4434 4490 3.399181 GATGACCCCGGCCTCACA 61.399 66.667 0.00 0.00 0.00 3.58
4435 4491 2.692368 ATGACCCCGGCCTCACAT 60.692 61.111 0.00 0.00 0.00 3.21
4436 4492 2.666596 GATGACCCCGGCCTCACATC 62.667 65.000 0.00 5.43 0.00 3.06
4437 4493 3.083997 GACCCCGGCCTCACATCT 61.084 66.667 0.00 0.00 0.00 2.90
4438 4494 3.391665 GACCCCGGCCTCACATCTG 62.392 68.421 0.00 0.00 0.00 2.90
4439 4495 4.181010 CCCCGGCCTCACATCTGG 62.181 72.222 0.00 0.00 0.00 3.86
4440 4496 4.181010 CCCGGCCTCACATCTGGG 62.181 72.222 0.00 0.00 42.07 4.45
4441 4497 3.083349 CCGGCCTCACATCTGGGA 61.083 66.667 0.00 0.00 0.00 4.37
4442 4498 2.503061 CGGCCTCACATCTGGGAG 59.497 66.667 0.00 2.31 44.99 4.30
4453 4509 2.424557 CATCTGGGAGATGTATGCTGC 58.575 52.381 5.55 0.00 45.33 5.25
4454 4510 0.761187 TCTGGGAGATGTATGCTGCC 59.239 55.000 0.00 0.00 43.42 4.85
4457 4513 2.283145 GGGAGATGTATGCTGCCATT 57.717 50.000 0.00 0.00 42.74 3.16
4458 4514 2.590821 GGGAGATGTATGCTGCCATTT 58.409 47.619 0.00 0.00 42.74 2.32
4459 4515 2.961062 GGGAGATGTATGCTGCCATTTT 59.039 45.455 0.00 0.00 42.74 1.82
4460 4516 4.144297 GGGAGATGTATGCTGCCATTTTA 58.856 43.478 0.00 0.00 42.74 1.52
4461 4517 4.768968 GGGAGATGTATGCTGCCATTTTAT 59.231 41.667 0.00 0.00 42.74 1.40
4462 4518 5.244626 GGGAGATGTATGCTGCCATTTTATT 59.755 40.000 0.00 0.00 42.74 1.40
4463 4519 6.154445 GGAGATGTATGCTGCCATTTTATTG 58.846 40.000 0.00 0.00 32.85 1.90
4464 4520 6.016024 GGAGATGTATGCTGCCATTTTATTGA 60.016 38.462 0.00 0.00 32.85 2.57
4465 4521 7.309621 GGAGATGTATGCTGCCATTTTATTGAT 60.310 37.037 0.00 0.00 32.85 2.57
4466 4522 7.959175 AGATGTATGCTGCCATTTTATTGATT 58.041 30.769 0.00 0.00 32.85 2.57
4467 4523 9.081204 AGATGTATGCTGCCATTTTATTGATTA 57.919 29.630 0.00 0.00 32.85 1.75
4468 4524 9.865321 GATGTATGCTGCCATTTTATTGATTAT 57.135 29.630 0.00 0.00 32.85 1.28
4470 4526 9.695526 TGTATGCTGCCATTTTATTGATTATTC 57.304 29.630 0.00 0.00 32.85 1.75
4471 4527 9.918630 GTATGCTGCCATTTTATTGATTATTCT 57.081 29.630 0.00 0.00 32.85 2.40
4473 4529 7.140705 TGCTGCCATTTTATTGATTATTCTCG 58.859 34.615 0.00 0.00 0.00 4.04
4474 4530 7.013178 TGCTGCCATTTTATTGATTATTCTCGA 59.987 33.333 0.00 0.00 0.00 4.04
4475 4531 7.536622 GCTGCCATTTTATTGATTATTCTCGAG 59.463 37.037 5.93 5.93 0.00 4.04
4476 4532 7.874940 TGCCATTTTATTGATTATTCTCGAGG 58.125 34.615 13.56 0.00 0.00 4.63
4477 4533 7.719193 TGCCATTTTATTGATTATTCTCGAGGA 59.281 33.333 13.56 3.44 0.00 3.71
4478 4534 8.017946 GCCATTTTATTGATTATTCTCGAGGAC 58.982 37.037 13.56 0.00 0.00 3.85
4479 4535 8.507249 CCATTTTATTGATTATTCTCGAGGACC 58.493 37.037 13.56 0.00 0.00 4.46
4480 4536 9.277783 CATTTTATTGATTATTCTCGAGGACCT 57.722 33.333 13.56 0.00 0.00 3.85
4481 4537 9.853177 ATTTTATTGATTATTCTCGAGGACCTT 57.147 29.630 13.56 0.00 0.00 3.50
4483 4539 9.760077 TTTATTGATTATTCTCGAGGACCTTAC 57.240 33.333 13.56 0.40 0.00 2.34
4484 4540 6.785337 TTGATTATTCTCGAGGACCTTACA 57.215 37.500 13.56 3.04 0.00 2.41
4485 4541 6.785337 TGATTATTCTCGAGGACCTTACAA 57.215 37.500 13.56 0.00 0.00 2.41
4486 4542 7.177832 TGATTATTCTCGAGGACCTTACAAA 57.822 36.000 13.56 0.00 0.00 2.83
4487 4543 7.265673 TGATTATTCTCGAGGACCTTACAAAG 58.734 38.462 13.56 0.00 0.00 2.77
4488 4544 6.600882 TTATTCTCGAGGACCTTACAAAGT 57.399 37.500 13.56 0.00 0.00 2.66
4489 4545 7.707624 TTATTCTCGAGGACCTTACAAAGTA 57.292 36.000 13.56 0.00 0.00 2.24
4490 4546 5.640189 TTCTCGAGGACCTTACAAAGTAG 57.360 43.478 13.56 0.00 0.00 2.57
4491 4547 4.660168 TCTCGAGGACCTTACAAAGTAGT 58.340 43.478 13.56 0.00 0.00 2.73
4492 4548 5.809001 TCTCGAGGACCTTACAAAGTAGTA 58.191 41.667 13.56 0.00 0.00 1.82
4493 4549 5.645497 TCTCGAGGACCTTACAAAGTAGTAC 59.355 44.000 13.56 0.00 0.00 2.73
4494 4550 5.316167 TCGAGGACCTTACAAAGTAGTACA 58.684 41.667 2.52 0.00 0.00 2.90
4495 4551 5.769662 TCGAGGACCTTACAAAGTAGTACAA 59.230 40.000 2.52 0.00 0.00 2.41
4496 4552 5.860716 CGAGGACCTTACAAAGTAGTACAAC 59.139 44.000 2.52 0.00 0.00 3.32
4497 4553 6.515531 CGAGGACCTTACAAAGTAGTACAACA 60.516 42.308 2.52 0.00 0.00 3.33
4498 4554 7.128234 AGGACCTTACAAAGTAGTACAACAA 57.872 36.000 2.52 0.00 0.00 2.83
4499 4555 7.742767 AGGACCTTACAAAGTAGTACAACAAT 58.257 34.615 2.52 0.00 0.00 2.71
4500 4556 8.873144 AGGACCTTACAAAGTAGTACAACAATA 58.127 33.333 2.52 0.00 0.00 1.90
4501 4557 9.662947 GGACCTTACAAAGTAGTACAACAATAT 57.337 33.333 2.52 0.00 0.00 1.28
4508 4564 9.772973 ACAAAGTAGTACAACAATATGTCTGAA 57.227 29.630 2.52 0.00 34.75 3.02
4511 4567 9.601217 AAGTAGTACAACAATATGTCTGAATCC 57.399 33.333 2.52 0.00 34.75 3.01
4512 4568 7.921214 AGTAGTACAACAATATGTCTGAATCCG 59.079 37.037 2.52 0.00 34.75 4.18
4513 4569 4.882671 ACAACAATATGTCTGAATCCGC 57.117 40.909 0.00 0.00 0.00 5.54
4514 4570 3.627577 ACAACAATATGTCTGAATCCGCC 59.372 43.478 0.00 0.00 0.00 6.13
4515 4571 3.558931 ACAATATGTCTGAATCCGCCA 57.441 42.857 0.00 0.00 0.00 5.69
4516 4572 4.090761 ACAATATGTCTGAATCCGCCAT 57.909 40.909 0.00 0.00 0.00 4.40
4517 4573 4.067896 ACAATATGTCTGAATCCGCCATC 58.932 43.478 0.00 0.00 0.00 3.51
4518 4574 4.202398 ACAATATGTCTGAATCCGCCATCT 60.202 41.667 0.00 0.00 0.00 2.90
4519 4575 4.630644 ATATGTCTGAATCCGCCATCTT 57.369 40.909 0.00 0.00 0.00 2.40
4520 4576 2.028420 TGTCTGAATCCGCCATCTTG 57.972 50.000 0.00 0.00 0.00 3.02
4521 4577 1.554617 TGTCTGAATCCGCCATCTTGA 59.445 47.619 0.00 0.00 0.00 3.02
4522 4578 1.936547 GTCTGAATCCGCCATCTTGAC 59.063 52.381 0.00 0.00 0.00 3.18
4523 4579 1.554617 TCTGAATCCGCCATCTTGACA 59.445 47.619 0.00 0.00 0.00 3.58
4524 4580 2.027285 TCTGAATCCGCCATCTTGACAA 60.027 45.455 0.00 0.00 0.00 3.18
4525 4581 2.083774 TGAATCCGCCATCTTGACAAC 58.916 47.619 0.00 0.00 0.00 3.32
4526 4582 2.083774 GAATCCGCCATCTTGACAACA 58.916 47.619 0.00 0.00 0.00 3.33
4527 4583 2.425143 ATCCGCCATCTTGACAACAT 57.575 45.000 0.00 0.00 0.00 2.71
4528 4584 1.737838 TCCGCCATCTTGACAACATC 58.262 50.000 0.00 0.00 0.00 3.06
4529 4585 1.278985 TCCGCCATCTTGACAACATCT 59.721 47.619 0.00 0.00 0.00 2.90
4530 4586 1.399440 CCGCCATCTTGACAACATCTG 59.601 52.381 0.00 0.00 0.00 2.90
4531 4587 2.079158 CGCCATCTTGACAACATCTGT 58.921 47.619 0.00 0.00 42.61 3.41
4532 4588 2.159612 CGCCATCTTGACAACATCTGTG 60.160 50.000 0.00 0.00 38.84 3.66
4533 4589 2.415090 GCCATCTTGACAACATCTGTGC 60.415 50.000 0.00 0.00 38.84 4.57
4534 4590 2.163010 CCATCTTGACAACATCTGTGCC 59.837 50.000 0.00 0.00 38.84 5.01
4535 4591 2.936919 TCTTGACAACATCTGTGCCT 57.063 45.000 0.00 0.00 38.84 4.75
4536 4592 4.256110 CATCTTGACAACATCTGTGCCTA 58.744 43.478 0.00 0.00 38.84 3.93
4537 4593 3.664107 TCTTGACAACATCTGTGCCTAC 58.336 45.455 0.00 0.00 38.84 3.18
4538 4594 3.324846 TCTTGACAACATCTGTGCCTACT 59.675 43.478 0.00 0.00 38.84 2.57
4539 4595 3.319137 TGACAACATCTGTGCCTACTC 57.681 47.619 0.00 0.00 38.84 2.59
4540 4596 2.028112 TGACAACATCTGTGCCTACTCC 60.028 50.000 0.00 0.00 38.84 3.85
4541 4597 1.977854 ACAACATCTGTGCCTACTCCA 59.022 47.619 0.00 0.00 36.69 3.86
4542 4598 2.371841 ACAACATCTGTGCCTACTCCAA 59.628 45.455 0.00 0.00 36.69 3.53
4543 4599 3.009473 ACAACATCTGTGCCTACTCCAAT 59.991 43.478 0.00 0.00 36.69 3.16
4544 4600 3.550437 ACATCTGTGCCTACTCCAATC 57.450 47.619 0.00 0.00 0.00 2.67
4545 4601 2.171448 ACATCTGTGCCTACTCCAATCC 59.829 50.000 0.00 0.00 0.00 3.01
4546 4602 1.951209 TCTGTGCCTACTCCAATCCA 58.049 50.000 0.00 0.00 0.00 3.41
4547 4603 2.481441 TCTGTGCCTACTCCAATCCAT 58.519 47.619 0.00 0.00 0.00 3.41
4548 4604 3.653164 TCTGTGCCTACTCCAATCCATA 58.347 45.455 0.00 0.00 0.00 2.74
4549 4605 4.234550 TCTGTGCCTACTCCAATCCATAT 58.765 43.478 0.00 0.00 0.00 1.78
4550 4606 4.040829 TCTGTGCCTACTCCAATCCATATG 59.959 45.833 0.00 0.00 0.00 1.78
4551 4607 3.973305 TGTGCCTACTCCAATCCATATGA 59.027 43.478 3.65 0.00 0.00 2.15
4552 4608 4.598807 TGTGCCTACTCCAATCCATATGAT 59.401 41.667 3.65 0.00 34.22 2.45
4553 4609 4.940046 GTGCCTACTCCAATCCATATGATG 59.060 45.833 3.65 0.34 32.68 3.07
4554 4610 4.845796 TGCCTACTCCAATCCATATGATGA 59.154 41.667 3.65 0.00 32.68 2.92
4555 4611 5.310331 TGCCTACTCCAATCCATATGATGAA 59.690 40.000 3.65 0.00 32.68 2.57
4556 4612 6.183361 TGCCTACTCCAATCCATATGATGAAA 60.183 38.462 3.65 0.00 32.68 2.69
4557 4613 6.373774 GCCTACTCCAATCCATATGATGAAAG 59.626 42.308 3.65 4.64 32.68 2.62
4558 4614 6.883217 CCTACTCCAATCCATATGATGAAAGG 59.117 42.308 3.65 1.16 32.68 3.11
4559 4615 6.520021 ACTCCAATCCATATGATGAAAGGA 57.480 37.500 3.65 5.21 32.68 3.36
4560 4616 6.302269 ACTCCAATCCATATGATGAAAGGAC 58.698 40.000 3.65 0.00 32.68 3.85
4561 4617 6.126390 ACTCCAATCCATATGATGAAAGGACA 60.126 38.462 3.65 0.00 32.68 4.02
4562 4618 6.855667 TCCAATCCATATGATGAAAGGACAT 58.144 36.000 3.65 0.00 32.68 3.06
4563 4619 6.944290 TCCAATCCATATGATGAAAGGACATC 59.056 38.462 3.65 0.00 44.58 3.06
4573 4629 5.814783 GATGAAAGGACATCAATGCTACAC 58.185 41.667 0.00 0.00 44.00 2.90
4574 4630 4.009675 TGAAAGGACATCAATGCTACACC 58.990 43.478 0.00 0.00 0.00 4.16
4575 4631 4.263462 TGAAAGGACATCAATGCTACACCT 60.263 41.667 0.00 0.00 0.00 4.00
4576 4632 5.045942 TGAAAGGACATCAATGCTACACCTA 60.046 40.000 0.00 0.00 0.00 3.08
4577 4633 4.408182 AGGACATCAATGCTACACCTAC 57.592 45.455 0.00 0.00 0.00 3.18
4578 4634 3.123804 GGACATCAATGCTACACCTACG 58.876 50.000 0.00 0.00 0.00 3.51
4579 4635 3.430374 GGACATCAATGCTACACCTACGT 60.430 47.826 0.00 0.00 0.00 3.57
4580 4636 4.202080 GGACATCAATGCTACACCTACGTA 60.202 45.833 0.00 0.00 0.00 3.57
4581 4637 4.933330 ACATCAATGCTACACCTACGTAG 58.067 43.478 15.92 15.92 41.56 3.51
4614 4670 7.642071 ACGTAATTAATGTAACAGTTGACGT 57.358 32.000 0.00 0.00 34.16 4.34
4615 4671 7.503991 ACGTAATTAATGTAACAGTTGACGTG 58.496 34.615 0.00 0.00 37.27 4.49
4616 4672 6.951530 CGTAATTAATGTAACAGTTGACGTGG 59.048 38.462 0.00 0.00 0.00 4.94
4617 4673 4.735662 TTAATGTAACAGTTGACGTGGC 57.264 40.909 0.00 0.00 0.00 5.01
4618 4674 1.519408 ATGTAACAGTTGACGTGGCC 58.481 50.000 0.00 0.00 0.00 5.36
4619 4675 0.466543 TGTAACAGTTGACGTGGCCT 59.533 50.000 3.32 0.00 0.00 5.19
4620 4676 1.134340 TGTAACAGTTGACGTGGCCTT 60.134 47.619 3.32 0.00 0.00 4.35
4621 4677 1.944709 GTAACAGTTGACGTGGCCTTT 59.055 47.619 3.32 0.00 0.00 3.11
4622 4678 1.470051 AACAGTTGACGTGGCCTTTT 58.530 45.000 3.32 0.00 0.00 2.27
4623 4679 1.470051 ACAGTTGACGTGGCCTTTTT 58.530 45.000 3.32 0.00 0.00 1.94
4624 4680 1.134175 ACAGTTGACGTGGCCTTTTTG 59.866 47.619 3.32 0.00 0.00 2.44
4625 4681 1.134175 CAGTTGACGTGGCCTTTTTGT 59.866 47.619 3.32 0.00 0.00 2.83
4626 4682 1.822371 AGTTGACGTGGCCTTTTTGTT 59.178 42.857 3.32 0.00 0.00 2.83
4627 4683 3.018149 AGTTGACGTGGCCTTTTTGTTA 58.982 40.909 3.32 0.00 0.00 2.41
4628 4684 3.066203 AGTTGACGTGGCCTTTTTGTTAG 59.934 43.478 3.32 0.00 0.00 2.34
4629 4685 2.920524 TGACGTGGCCTTTTTGTTAGA 58.079 42.857 3.32 0.00 0.00 2.10
4630 4686 2.875933 TGACGTGGCCTTTTTGTTAGAG 59.124 45.455 3.32 0.00 0.00 2.43
4631 4687 2.225727 GACGTGGCCTTTTTGTTAGAGG 59.774 50.000 3.32 0.00 0.00 3.69
4632 4688 2.158726 ACGTGGCCTTTTTGTTAGAGGA 60.159 45.455 3.32 0.00 32.11 3.71
4633 4689 2.882137 CGTGGCCTTTTTGTTAGAGGAA 59.118 45.455 3.32 0.00 32.11 3.36
4634 4690 3.316868 CGTGGCCTTTTTGTTAGAGGAAA 59.683 43.478 3.32 0.00 32.11 3.13
4635 4691 4.022329 CGTGGCCTTTTTGTTAGAGGAAAT 60.022 41.667 3.32 0.00 32.11 2.17
4636 4692 5.470368 GTGGCCTTTTTGTTAGAGGAAATC 58.530 41.667 3.32 0.00 32.11 2.17
4637 4693 5.010617 GTGGCCTTTTTGTTAGAGGAAATCA 59.989 40.000 3.32 0.00 32.11 2.57
4638 4694 5.243730 TGGCCTTTTTGTTAGAGGAAATCAG 59.756 40.000 3.32 0.00 32.11 2.90
4639 4695 5.336770 GGCCTTTTTGTTAGAGGAAATCAGG 60.337 44.000 0.00 0.00 32.11 3.86
4640 4696 5.336770 GCCTTTTTGTTAGAGGAAATCAGGG 60.337 44.000 0.00 0.00 32.11 4.45
4641 4697 5.185828 CCTTTTTGTTAGAGGAAATCAGGGG 59.814 44.000 0.00 0.00 32.11 4.79
4642 4698 5.592587 TTTTGTTAGAGGAAATCAGGGGA 57.407 39.130 0.00 0.00 0.00 4.81
4643 4699 4.844349 TTGTTAGAGGAAATCAGGGGAG 57.156 45.455 0.00 0.00 0.00 4.30
4644 4700 3.115390 TGTTAGAGGAAATCAGGGGAGG 58.885 50.000 0.00 0.00 0.00 4.30
4645 4701 2.439880 GTTAGAGGAAATCAGGGGAGGG 59.560 54.545 0.00 0.00 0.00 4.30
4646 4702 0.327964 AGAGGAAATCAGGGGAGGGG 60.328 60.000 0.00 0.00 0.00 4.79
4647 4703 1.309102 AGGAAATCAGGGGAGGGGG 60.309 63.158 0.00 0.00 0.00 5.40
4664 4720 2.283604 GGCCCACCCCGTTGAAAT 60.284 61.111 0.00 0.00 0.00 2.17
4665 4721 2.348104 GGCCCACCCCGTTGAAATC 61.348 63.158 0.00 0.00 0.00 2.17
4666 4722 1.605165 GCCCACCCCGTTGAAATCA 60.605 57.895 0.00 0.00 0.00 2.57
4667 4723 1.595093 GCCCACCCCGTTGAAATCAG 61.595 60.000 0.00 0.00 0.00 2.90
4668 4724 0.965363 CCCACCCCGTTGAAATCAGG 60.965 60.000 0.00 0.00 0.00 3.86
4669 4725 0.965363 CCACCCCGTTGAAATCAGGG 60.965 60.000 5.01 5.01 43.88 4.45
4671 4727 3.603365 CCCGTTGAAATCAGGGGC 58.397 61.111 8.22 0.00 40.18 5.80
4672 4728 2.406616 CCCGTTGAAATCAGGGGCG 61.407 63.158 8.22 1.84 40.18 6.13
4673 4729 2.406616 CCGTTGAAATCAGGGGCGG 61.407 63.158 0.00 0.00 0.00 6.13
4674 4730 1.674322 CGTTGAAATCAGGGGCGGT 60.674 57.895 0.00 0.00 0.00 5.68
4675 4731 1.883021 GTTGAAATCAGGGGCGGTG 59.117 57.895 0.00 0.00 0.00 4.94
4676 4732 1.304052 TTGAAATCAGGGGCGGTGG 60.304 57.895 0.00 0.00 0.00 4.61
4677 4733 1.784301 TTGAAATCAGGGGCGGTGGA 61.784 55.000 0.00 0.00 0.00 4.02
4678 4734 1.001393 GAAATCAGGGGCGGTGGAA 60.001 57.895 0.00 0.00 0.00 3.53
4679 4735 1.000896 AAATCAGGGGCGGTGGAAG 60.001 57.895 0.00 0.00 0.00 3.46
4680 4736 2.499303 AAATCAGGGGCGGTGGAAGG 62.499 60.000 0.00 0.00 0.00 3.46
4681 4737 4.974438 TCAGGGGCGGTGGAAGGT 62.974 66.667 0.00 0.00 0.00 3.50
4682 4738 3.966543 CAGGGGCGGTGGAAGGTT 61.967 66.667 0.00 0.00 0.00 3.50
4683 4739 3.182996 AGGGGCGGTGGAAGGTTT 61.183 61.111 0.00 0.00 0.00 3.27
4684 4740 1.848895 AGGGGCGGTGGAAGGTTTA 60.849 57.895 0.00 0.00 0.00 2.01
4685 4741 1.378119 GGGGCGGTGGAAGGTTTAG 60.378 63.158 0.00 0.00 0.00 1.85
4686 4742 1.377612 GGGCGGTGGAAGGTTTAGT 59.622 57.895 0.00 0.00 0.00 2.24
4687 4743 0.251033 GGGCGGTGGAAGGTTTAGTT 60.251 55.000 0.00 0.00 0.00 2.24
4688 4744 1.003464 GGGCGGTGGAAGGTTTAGTTA 59.997 52.381 0.00 0.00 0.00 2.24
4689 4745 2.353323 GGCGGTGGAAGGTTTAGTTAG 58.647 52.381 0.00 0.00 0.00 2.34
4690 4746 2.353323 GCGGTGGAAGGTTTAGTTAGG 58.647 52.381 0.00 0.00 0.00 2.69
4691 4747 2.938314 GCGGTGGAAGGTTTAGTTAGGG 60.938 54.545 0.00 0.00 0.00 3.53
4692 4748 2.568509 CGGTGGAAGGTTTAGTTAGGGA 59.431 50.000 0.00 0.00 0.00 4.20
4693 4749 3.008266 CGGTGGAAGGTTTAGTTAGGGAA 59.992 47.826 0.00 0.00 0.00 3.97
4694 4750 4.330250 GGTGGAAGGTTTAGTTAGGGAAC 58.670 47.826 0.00 0.00 35.64 3.62
4696 4752 5.457197 GGTGGAAGGTTTAGTTAGGGAACTT 60.457 44.000 0.00 0.00 43.70 2.66
4697 4753 6.066690 GTGGAAGGTTTAGTTAGGGAACTTT 58.933 40.000 0.00 0.00 43.70 2.66
4698 4754 6.206243 GTGGAAGGTTTAGTTAGGGAACTTTC 59.794 42.308 0.00 0.00 43.70 2.62
4699 4755 5.410746 GGAAGGTTTAGTTAGGGAACTTTCG 59.589 44.000 0.00 0.00 43.70 3.46
4700 4756 5.557576 AGGTTTAGTTAGGGAACTTTCGT 57.442 39.130 0.00 0.00 43.70 3.85
4701 4757 6.670695 AGGTTTAGTTAGGGAACTTTCGTA 57.329 37.500 0.00 0.00 43.70 3.43
4702 4758 7.066307 AGGTTTAGTTAGGGAACTTTCGTAA 57.934 36.000 0.00 0.00 43.70 3.18
4703 4759 7.157347 AGGTTTAGTTAGGGAACTTTCGTAAG 58.843 38.462 0.00 0.00 43.70 2.34
4704 4760 7.015584 AGGTTTAGTTAGGGAACTTTCGTAAGA 59.984 37.037 8.93 0.00 43.70 2.10
4705 4761 7.821359 GGTTTAGTTAGGGAACTTTCGTAAGAT 59.179 37.037 8.93 0.00 43.70 2.40
4706 4762 9.212641 GTTTAGTTAGGGAACTTTCGTAAGATT 57.787 33.333 8.93 0.00 43.70 2.40
4708 4764 9.860898 TTAGTTAGGGAACTTTCGTAAGATTAC 57.139 33.333 8.93 0.59 43.70 1.89
4728 4784 3.221964 CGTAGGCTTTTACGTAGGTGT 57.778 47.619 0.00 0.00 41.01 4.16
4729 4785 4.355543 CGTAGGCTTTTACGTAGGTGTA 57.644 45.455 0.00 0.00 41.01 2.90
4730 4786 4.346129 CGTAGGCTTTTACGTAGGTGTAG 58.654 47.826 0.00 0.00 41.01 2.74
4731 4787 3.242549 AGGCTTTTACGTAGGTGTAGC 57.757 47.619 0.00 4.40 0.00 3.58
4732 4788 2.564062 AGGCTTTTACGTAGGTGTAGCA 59.436 45.455 15.44 0.00 31.10 3.49
4733 4789 3.197116 AGGCTTTTACGTAGGTGTAGCAT 59.803 43.478 15.44 9.06 31.10 3.79
4734 4790 3.937079 GGCTTTTACGTAGGTGTAGCATT 59.063 43.478 15.44 0.00 31.10 3.56
4735 4791 4.393990 GGCTTTTACGTAGGTGTAGCATTT 59.606 41.667 15.44 0.00 31.10 2.32
4736 4792 5.106436 GGCTTTTACGTAGGTGTAGCATTTT 60.106 40.000 15.44 0.00 31.10 1.82
4737 4793 6.376177 GCTTTTACGTAGGTGTAGCATTTTT 58.624 36.000 0.00 0.00 0.00 1.94
4738 4794 6.304683 GCTTTTACGTAGGTGTAGCATTTTTG 59.695 38.462 0.00 0.00 0.00 2.44
4739 4795 7.493743 TTTTACGTAGGTGTAGCATTTTTGA 57.506 32.000 0.00 0.00 0.00 2.69
4740 4796 7.675962 TTTACGTAGGTGTAGCATTTTTGAT 57.324 32.000 0.00 0.00 0.00 2.57
4741 4797 5.545658 ACGTAGGTGTAGCATTTTTGATG 57.454 39.130 0.00 0.00 0.00 3.07
4742 4798 5.242434 ACGTAGGTGTAGCATTTTTGATGA 58.758 37.500 0.00 0.00 0.00 2.92
4743 4799 5.703592 ACGTAGGTGTAGCATTTTTGATGAA 59.296 36.000 0.00 0.00 0.00 2.57
4744 4800 6.021596 CGTAGGTGTAGCATTTTTGATGAAC 58.978 40.000 0.00 0.00 0.00 3.18
4745 4801 5.046910 AGGTGTAGCATTTTTGATGAACG 57.953 39.130 0.00 0.00 0.00 3.95
4746 4802 4.082787 AGGTGTAGCATTTTTGATGAACGG 60.083 41.667 0.00 0.00 0.00 4.44
4747 4803 4.165779 GTGTAGCATTTTTGATGAACGGG 58.834 43.478 0.00 0.00 0.00 5.28
4748 4804 3.823873 TGTAGCATTTTTGATGAACGGGT 59.176 39.130 0.00 0.00 0.00 5.28
4749 4805 3.302365 AGCATTTTTGATGAACGGGTG 57.698 42.857 0.00 0.00 0.00 4.61
4750 4806 1.726248 GCATTTTTGATGAACGGGTGC 59.274 47.619 0.00 0.00 0.00 5.01
4751 4807 1.984990 CATTTTTGATGAACGGGTGCG 59.015 47.619 0.00 0.00 0.00 5.34
4752 4808 1.309950 TTTTTGATGAACGGGTGCGA 58.690 45.000 0.00 0.00 0.00 5.10
4753 4809 0.871722 TTTTGATGAACGGGTGCGAG 59.128 50.000 0.00 0.00 0.00 5.03
4754 4810 1.573829 TTTGATGAACGGGTGCGAGC 61.574 55.000 0.00 0.00 0.00 5.03
4755 4811 2.125512 GATGAACGGGTGCGAGCT 60.126 61.111 0.00 0.00 0.00 4.09
4756 4812 2.434884 ATGAACGGGTGCGAGCTG 60.435 61.111 0.00 0.00 0.00 4.24
4757 4813 3.958147 ATGAACGGGTGCGAGCTGG 62.958 63.158 0.00 0.00 0.00 4.85
4764 4820 3.064324 GTGCGAGCTGGGCCAAAT 61.064 61.111 8.04 0.00 0.00 2.32
4765 4821 1.748879 GTGCGAGCTGGGCCAAATA 60.749 57.895 8.04 0.00 0.00 1.40
4766 4822 1.103398 GTGCGAGCTGGGCCAAATAT 61.103 55.000 8.04 0.00 0.00 1.28
4767 4823 0.819259 TGCGAGCTGGGCCAAATATC 60.819 55.000 8.04 2.18 0.00 1.63
4768 4824 0.819259 GCGAGCTGGGCCAAATATCA 60.819 55.000 8.04 0.00 0.00 2.15
4769 4825 1.679139 CGAGCTGGGCCAAATATCAA 58.321 50.000 8.04 0.00 0.00 2.57
4770 4826 1.605710 CGAGCTGGGCCAAATATCAAG 59.394 52.381 8.04 0.00 0.00 3.02
4771 4827 2.746142 CGAGCTGGGCCAAATATCAAGA 60.746 50.000 8.04 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 4.796830 GCACACACAAATGTCATCATGATC 59.203 41.667 4.86 0.00 36.72 2.92
205 206 8.338986 GGCTTTATAGAAGAATCTTTAGCACAC 58.661 37.037 0.00 0.00 37.10 3.82
421 425 2.187946 GCAGTAGCGCTGGTCCAT 59.812 61.111 22.90 0.00 45.14 3.41
512 516 5.823045 CACCACTATTAGGAAAAAGCCTAGG 59.177 44.000 3.67 3.67 41.34 3.02
523 527 7.284074 TGTTCTTCAAAACACCACTATTAGGA 58.716 34.615 0.00 0.00 34.31 2.94
553 557 6.110411 TCAATTTCGAAGTAGAACCCTCTT 57.890 37.500 0.00 0.00 32.70 2.85
589 593 3.194005 TCGCCTTTCCACCATCTATTC 57.806 47.619 0.00 0.00 0.00 1.75
658 662 1.148310 CTGTGTTGGTAACGCCTCTG 58.852 55.000 3.16 0.00 41.11 3.35
718 722 3.366052 TCCCAGGATTAGTTGGCTTTC 57.634 47.619 0.00 0.00 32.98 2.62
746 750 3.006217 TGAGATGATTAGGGAGTGATGCG 59.994 47.826 0.00 0.00 0.00 4.73
788 792 0.386858 GCTCCGTTTTCCCGCTTTTC 60.387 55.000 0.00 0.00 0.00 2.29
965 975 2.669240 GGGAACGGGAAGTGAGGG 59.331 66.667 0.00 0.00 0.00 4.30
973 983 2.284405 GGAGAGTGGGGAACGGGA 60.284 66.667 0.00 0.00 0.00 5.14
1026 1043 2.154798 TTGCAAGGAGGACGAGGACG 62.155 60.000 0.00 0.00 45.75 4.79
1100 1117 4.991760 CGATGTAGGTCGTCGTCC 57.008 61.111 0.00 0.00 46.61 4.79
1708 1725 2.665185 GAACAGGCTCGCGTTGGT 60.665 61.111 5.77 0.00 0.00 3.67
2160 2177 0.815213 AGAGCTTGCTTGCGTTGTCA 60.815 50.000 0.00 0.00 38.13 3.58
2169 2186 0.246086 CCGAGAGACAGAGCTTGCTT 59.754 55.000 0.00 0.00 0.00 3.91
2217 2234 1.438651 GGTCGCACAGCACAATCTTA 58.561 50.000 0.00 0.00 0.00 2.10
2340 2357 2.284995 GGGAGGAGGTGGCTGTCT 60.285 66.667 0.00 0.00 0.00 3.41
2764 2813 4.537015 CGCCTTTTTGGAACTTTAGTCTG 58.463 43.478 0.00 0.00 38.35 3.51
2770 2819 0.827368 TGGCGCCTTTTTGGAACTTT 59.173 45.000 29.70 0.00 38.35 2.66
2771 2820 1.047801 ATGGCGCCTTTTTGGAACTT 58.952 45.000 29.70 0.00 38.35 2.66
2772 2821 1.047801 AATGGCGCCTTTTTGGAACT 58.952 45.000 29.70 0.00 38.35 3.01
2776 2825 2.097680 ATGAAATGGCGCCTTTTTGG 57.902 45.000 33.13 0.00 39.35 3.28
2819 2868 3.782889 ACAAGTGCTGTTTCTGTTTCC 57.217 42.857 0.00 0.00 32.99 3.13
2877 2926 7.806487 CACATCTAGTCTAGTCTAGTCGTCTAG 59.194 44.444 19.35 10.06 43.48 2.43
2878 2927 7.501892 TCACATCTAGTCTAGTCTAGTCGTCTA 59.498 40.741 19.35 4.27 38.66 2.59
2879 2928 6.321945 TCACATCTAGTCTAGTCTAGTCGTCT 59.678 42.308 19.35 4.86 38.66 4.18
2880 2929 6.506147 TCACATCTAGTCTAGTCTAGTCGTC 58.494 44.000 19.35 0.00 38.66 4.20
2881 2930 6.468333 TCACATCTAGTCTAGTCTAGTCGT 57.532 41.667 19.35 15.31 38.66 4.34
2882 2931 7.254522 GGTTTCACATCTAGTCTAGTCTAGTCG 60.255 44.444 19.35 14.83 38.66 4.18
2886 2935 8.880991 AAAGGTTTCACATCTAGTCTAGTCTA 57.119 34.615 6.77 0.00 0.00 2.59
2887 2936 7.451877 TGAAAGGTTTCACATCTAGTCTAGTCT 59.548 37.037 6.77 0.00 41.88 3.24
3034 3083 7.814264 AAGGGAGTGAGCTGAATATTTATTG 57.186 36.000 0.00 0.00 0.00 1.90
3035 3084 7.836183 ACAAAGGGAGTGAGCTGAATATTTATT 59.164 33.333 0.00 0.00 0.00 1.40
3037 3086 6.599244 CACAAAGGGAGTGAGCTGAATATTTA 59.401 38.462 0.00 0.00 39.30 1.40
3038 3087 5.416952 CACAAAGGGAGTGAGCTGAATATTT 59.583 40.000 0.00 0.00 39.30 1.40
3069 3118 9.120538 ACAATCACACTATTGTTCAGTAAAAGT 57.879 29.630 0.00 0.00 45.54 2.66
3071 3120 9.114952 TCACAATCACACTATTGTTCAGTAAAA 57.885 29.630 0.00 0.00 45.54 1.52
3088 3137 1.747355 CCCTGCAGGAATCACAATCAC 59.253 52.381 34.91 0.00 38.24 3.06
3507 3556 1.331399 GCTCCCTCCTGTACCTCACC 61.331 65.000 0.00 0.00 0.00 4.02
3611 3660 0.868406 CACCTTCTTGAACACGAGCC 59.132 55.000 0.00 0.00 0.00 4.70
3744 3793 1.748879 CCATGTGTAGGCAACCGGG 60.749 63.158 6.32 0.00 37.17 5.73
3787 3836 2.360852 CACCAGCAGGGCCTGAAG 60.361 66.667 37.07 25.49 42.05 3.02
3809 3862 3.589988 CTGAACCTGAGCACGACTAAAT 58.410 45.455 0.00 0.00 0.00 1.40
3820 3873 4.815533 TTCATCTTCTCCTGAACCTGAG 57.184 45.455 0.00 0.00 0.00 3.35
3859 3912 5.999600 CCATGATATCCAGCAAACTACATCA 59.000 40.000 0.00 0.00 0.00 3.07
3860 3913 5.413833 CCCATGATATCCAGCAAACTACATC 59.586 44.000 0.00 0.00 0.00 3.06
3861 3914 5.319453 CCCATGATATCCAGCAAACTACAT 58.681 41.667 0.00 0.00 0.00 2.29
3862 3915 4.717877 CCCATGATATCCAGCAAACTACA 58.282 43.478 0.00 0.00 0.00 2.74
3863 3916 3.503748 GCCCATGATATCCAGCAAACTAC 59.496 47.826 0.00 0.00 0.00 2.73
3864 3917 3.754965 GCCCATGATATCCAGCAAACTA 58.245 45.455 0.00 0.00 0.00 2.24
3865 3918 2.590821 GCCCATGATATCCAGCAAACT 58.409 47.619 0.00 0.00 0.00 2.66
3866 3919 1.267806 CGCCCATGATATCCAGCAAAC 59.732 52.381 0.00 0.00 0.00 2.93
3867 3920 1.142667 TCGCCCATGATATCCAGCAAA 59.857 47.619 0.00 0.00 0.00 3.68
3868 3921 0.764271 TCGCCCATGATATCCAGCAA 59.236 50.000 0.00 0.00 0.00 3.91
3869 3922 0.322648 CTCGCCCATGATATCCAGCA 59.677 55.000 0.00 0.00 0.00 4.41
3870 3923 1.023513 GCTCGCCCATGATATCCAGC 61.024 60.000 0.00 0.00 0.00 4.85
3871 3924 0.738762 CGCTCGCCCATGATATCCAG 60.739 60.000 0.00 0.00 0.00 3.86
3872 3925 1.184970 TCGCTCGCCCATGATATCCA 61.185 55.000 0.00 0.00 0.00 3.41
3873 3926 0.737715 GTCGCTCGCCCATGATATCC 60.738 60.000 0.00 0.00 0.00 2.59
3874 3927 1.073216 CGTCGCTCGCCCATGATATC 61.073 60.000 0.00 0.00 0.00 1.63
3875 3928 1.080501 CGTCGCTCGCCCATGATAT 60.081 57.895 0.00 0.00 0.00 1.63
3876 3929 2.130073 CTCGTCGCTCGCCCATGATA 62.130 60.000 0.00 0.00 39.67 2.15
3877 3930 3.490793 CTCGTCGCTCGCCCATGAT 62.491 63.158 0.00 0.00 39.67 2.45
3878 3931 4.193334 CTCGTCGCTCGCCCATGA 62.193 66.667 0.00 0.00 39.67 3.07
3884 3937 3.611792 GACATGCTCGTCGCTCGC 61.612 66.667 0.00 0.00 40.11 5.03
3893 3946 3.558411 GCTGCGGACGACATGCTC 61.558 66.667 0.00 0.00 0.00 4.26
3909 3962 2.045340 ATGTGTAGGCAACCGGGC 60.045 61.111 6.32 0.00 43.80 6.13
3910 3963 1.748879 CCATGTGTAGGCAACCGGG 60.749 63.158 6.32 0.00 37.17 5.73
3911 3964 0.322098 TTCCATGTGTAGGCAACCGG 60.322 55.000 0.00 0.00 37.17 5.28
3912 3965 1.086696 CTTCCATGTGTAGGCAACCG 58.913 55.000 0.00 0.00 37.17 4.44
3913 3966 2.489938 TCTTCCATGTGTAGGCAACC 57.510 50.000 0.00 0.00 37.17 3.77
3914 3967 3.127548 CACATCTTCCATGTGTAGGCAAC 59.872 47.826 6.57 0.00 43.11 4.17
3915 3968 3.008923 TCACATCTTCCATGTGTAGGCAA 59.991 43.478 13.11 0.00 46.82 4.52
3916 3969 2.571202 TCACATCTTCCATGTGTAGGCA 59.429 45.455 13.11 0.00 46.82 4.75
3917 3970 3.201290 CTCACATCTTCCATGTGTAGGC 58.799 50.000 13.11 0.00 46.82 3.93
3918 3971 3.452264 TCCTCACATCTTCCATGTGTAGG 59.548 47.826 17.99 17.99 46.82 3.18
3919 3972 4.691175 CTCCTCACATCTTCCATGTGTAG 58.309 47.826 13.11 9.62 46.82 2.74
3920 3973 3.118629 GCTCCTCACATCTTCCATGTGTA 60.119 47.826 13.11 2.05 46.82 2.90
3921 3974 2.355513 GCTCCTCACATCTTCCATGTGT 60.356 50.000 13.11 0.00 46.82 3.72
3923 3976 1.911357 TGCTCCTCACATCTTCCATGT 59.089 47.619 0.00 0.00 0.00 3.21
3924 3977 2.562635 CTGCTCCTCACATCTTCCATG 58.437 52.381 0.00 0.00 0.00 3.66
3925 3978 1.489649 CCTGCTCCTCACATCTTCCAT 59.510 52.381 0.00 0.00 0.00 3.41
3926 3979 0.907486 CCTGCTCCTCACATCTTCCA 59.093 55.000 0.00 0.00 0.00 3.53
3927 3980 0.179936 CCCTGCTCCTCACATCTTCC 59.820 60.000 0.00 0.00 0.00 3.46
3928 3981 0.463474 GCCCTGCTCCTCACATCTTC 60.463 60.000 0.00 0.00 0.00 2.87
3929 3982 1.203441 TGCCCTGCTCCTCACATCTT 61.203 55.000 0.00 0.00 0.00 2.40
3930 3983 1.614525 TGCCCTGCTCCTCACATCT 60.615 57.895 0.00 0.00 0.00 2.90
3931 3984 1.153208 CTGCCCTGCTCCTCACATC 60.153 63.158 0.00 0.00 0.00 3.06
3932 3985 2.996395 CTGCCCTGCTCCTCACAT 59.004 61.111 0.00 0.00 0.00 3.21
3933 3986 4.025858 GCTGCCCTGCTCCTCACA 62.026 66.667 0.00 0.00 0.00 3.58
3934 3987 3.557903 TTGCTGCCCTGCTCCTCAC 62.558 63.158 0.00 0.00 0.00 3.51
3935 3988 3.251509 TTGCTGCCCTGCTCCTCA 61.252 61.111 0.00 0.00 0.00 3.86
3936 3989 2.749441 GTTGCTGCCCTGCTCCTC 60.749 66.667 0.00 0.00 0.00 3.71
3937 3990 2.761304 GAAGTTGCTGCCCTGCTCCT 62.761 60.000 0.00 0.00 0.00 3.69
3938 3991 2.282745 AAGTTGCTGCCCTGCTCC 60.283 61.111 0.00 0.00 0.00 4.70
3939 3992 1.584380 CTGAAGTTGCTGCCCTGCTC 61.584 60.000 0.00 0.00 0.00 4.26
3940 3993 1.602888 CTGAAGTTGCTGCCCTGCT 60.603 57.895 0.00 0.00 0.00 4.24
3941 3994 2.633509 CCTGAAGTTGCTGCCCTGC 61.634 63.158 0.00 0.00 0.00 4.85
3942 3995 2.633509 GCCTGAAGTTGCTGCCCTG 61.634 63.158 0.00 0.00 0.00 4.45
3943 3996 2.282745 GCCTGAAGTTGCTGCCCT 60.283 61.111 0.00 0.00 0.00 5.19
3944 3997 3.376918 GGCCTGAAGTTGCTGCCC 61.377 66.667 0.00 0.00 36.07 5.36
3945 3998 3.376918 GGGCCTGAAGTTGCTGCC 61.377 66.667 0.84 0.00 41.42 4.85
3946 3999 2.282745 AGGGCCTGAAGTTGCTGC 60.283 61.111 4.50 0.00 0.00 5.25
3947 4000 2.633509 GCAGGGCCTGAAGTTGCTG 61.634 63.158 37.07 8.61 32.44 4.41
3948 4001 2.282745 GCAGGGCCTGAAGTTGCT 60.283 61.111 37.07 0.00 32.44 3.91
3949 4002 2.282745 AGCAGGGCCTGAAGTTGC 60.283 61.111 37.07 21.06 32.44 4.17
3950 4003 1.975407 CCAGCAGGGCCTGAAGTTG 60.975 63.158 37.07 24.71 34.77 3.16
3951 4004 2.437897 CCAGCAGGGCCTGAAGTT 59.562 61.111 37.07 15.47 34.77 2.66
3952 4005 2.856000 ACCAGCAGGGCCTGAAGT 60.856 61.111 37.07 24.99 42.05 3.01
3953 4006 2.360852 CACCAGCAGGGCCTGAAG 60.361 66.667 37.07 25.49 42.05 3.02
3954 4007 2.296945 AAACACCAGCAGGGCCTGAA 62.297 55.000 37.07 0.00 42.05 3.02
3955 4008 2.766925 AAACACCAGCAGGGCCTGA 61.767 57.895 37.07 0.00 42.05 3.86
3956 4009 2.203538 AAACACCAGCAGGGCCTG 60.204 61.111 29.44 29.44 42.05 4.85
3957 4010 2.085343 ATCAAACACCAGCAGGGCCT 62.085 55.000 0.00 0.00 42.05 5.19
3958 4011 1.187567 AATCAAACACCAGCAGGGCC 61.188 55.000 0.00 0.00 42.05 5.80
3959 4012 0.681175 AAATCAAACACCAGCAGGGC 59.319 50.000 0.00 0.00 42.05 5.19
3960 4013 3.157087 ACTAAATCAAACACCAGCAGGG 58.843 45.455 0.00 0.00 44.81 4.45
3961 4014 3.120199 CGACTAAATCAAACACCAGCAGG 60.120 47.826 0.00 0.00 42.21 4.85
3962 4015 3.498397 ACGACTAAATCAAACACCAGCAG 59.502 43.478 0.00 0.00 0.00 4.24
3963 4016 3.249799 CACGACTAAATCAAACACCAGCA 59.750 43.478 0.00 0.00 0.00 4.41
3964 4017 3.810373 CACGACTAAATCAAACACCAGC 58.190 45.455 0.00 0.00 0.00 4.85
3965 4018 3.498397 AGCACGACTAAATCAAACACCAG 59.502 43.478 0.00 0.00 0.00 4.00
3966 4019 3.472652 AGCACGACTAAATCAAACACCA 58.527 40.909 0.00 0.00 0.00 4.17
3967 4020 3.423123 CGAGCACGACTAAATCAAACACC 60.423 47.826 0.00 0.00 42.66 4.16
3968 4021 3.183775 ACGAGCACGACTAAATCAAACAC 59.816 43.478 11.40 0.00 42.66 3.32
3969 4022 3.183574 CACGAGCACGACTAAATCAAACA 59.816 43.478 11.40 0.00 42.66 2.83
3970 4023 3.183775 ACACGAGCACGACTAAATCAAAC 59.816 43.478 11.40 0.00 42.66 2.93
3971 4024 3.386486 ACACGAGCACGACTAAATCAAA 58.614 40.909 11.40 0.00 42.66 2.69
3972 4025 3.021269 ACACGAGCACGACTAAATCAA 57.979 42.857 11.40 0.00 42.66 2.57
3973 4026 2.717580 ACACGAGCACGACTAAATCA 57.282 45.000 11.40 0.00 42.66 2.57
3974 4027 2.984471 TGAACACGAGCACGACTAAATC 59.016 45.455 11.40 0.65 42.66 2.17
3975 4028 3.021269 TGAACACGAGCACGACTAAAT 57.979 42.857 11.40 0.00 42.66 1.40
3976 4029 2.495409 TGAACACGAGCACGACTAAA 57.505 45.000 11.40 0.00 42.66 1.85
3977 4030 2.033675 TCTTGAACACGAGCACGACTAA 59.966 45.455 11.40 0.00 42.66 2.24
3978 4031 1.605232 TCTTGAACACGAGCACGACTA 59.395 47.619 11.40 0.00 42.66 2.59
3979 4032 0.384309 TCTTGAACACGAGCACGACT 59.616 50.000 11.40 0.00 42.66 4.18
3980 4033 1.190323 CTTCTTGAACACGAGCACGAC 59.810 52.381 11.40 0.00 42.66 4.34
3981 4034 1.487482 CTTCTTGAACACGAGCACGA 58.513 50.000 11.40 0.00 42.66 4.35
3982 4035 0.508641 CCTTCTTGAACACGAGCACG 59.491 55.000 0.76 0.76 45.75 5.34
3983 4036 1.261619 CACCTTCTTGAACACGAGCAC 59.738 52.381 0.00 0.00 0.00 4.40
3984 4037 1.581934 CACCTTCTTGAACACGAGCA 58.418 50.000 0.00 0.00 0.00 4.26
3985 4038 0.868406 CCACCTTCTTGAACACGAGC 59.132 55.000 0.00 0.00 0.00 5.03
3986 4039 1.512926 CCCACCTTCTTGAACACGAG 58.487 55.000 0.00 0.00 0.00 4.18
3987 4040 0.107831 CCCCACCTTCTTGAACACGA 59.892 55.000 0.00 0.00 0.00 4.35
3988 4041 1.515521 GCCCCACCTTCTTGAACACG 61.516 60.000 0.00 0.00 0.00 4.49
3989 4042 0.467290 TGCCCCACCTTCTTGAACAC 60.467 55.000 0.00 0.00 0.00 3.32
3990 4043 0.178992 CTGCCCCACCTTCTTGAACA 60.179 55.000 0.00 0.00 0.00 3.18
3991 4044 0.110486 TCTGCCCCACCTTCTTGAAC 59.890 55.000 0.00 0.00 0.00 3.18
3992 4045 0.850100 TTCTGCCCCACCTTCTTGAA 59.150 50.000 0.00 0.00 0.00 2.69
3993 4046 0.401738 CTTCTGCCCCACCTTCTTGA 59.598 55.000 0.00 0.00 0.00 3.02
3994 4047 1.246737 GCTTCTGCCCCACCTTCTTG 61.247 60.000 0.00 0.00 0.00 3.02
3995 4048 1.075659 GCTTCTGCCCCACCTTCTT 59.924 57.895 0.00 0.00 0.00 2.52
3996 4049 0.547712 TAGCTTCTGCCCCACCTTCT 60.548 55.000 0.00 0.00 40.80 2.85
3997 4050 0.107459 CTAGCTTCTGCCCCACCTTC 60.107 60.000 0.00 0.00 40.80 3.46
3998 4051 0.547712 TCTAGCTTCTGCCCCACCTT 60.548 55.000 0.00 0.00 40.80 3.50
3999 4052 0.327000 ATCTAGCTTCTGCCCCACCT 60.327 55.000 0.00 0.00 40.80 4.00
4000 4053 1.346068 CTATCTAGCTTCTGCCCCACC 59.654 57.143 0.00 0.00 40.80 4.61
4001 4054 1.270571 GCTATCTAGCTTCTGCCCCAC 60.271 57.143 0.00 0.00 45.62 4.61
4002 4055 1.051812 GCTATCTAGCTTCTGCCCCA 58.948 55.000 0.00 0.00 45.62 4.96
4003 4056 3.925453 GCTATCTAGCTTCTGCCCC 57.075 57.895 0.00 0.00 45.62 5.80
4013 4066 7.042187 CCAGCAAACTACATCAAAGCTATCTAG 60.042 40.741 0.00 0.00 0.00 2.43
4014 4067 6.763135 CCAGCAAACTACATCAAAGCTATCTA 59.237 38.462 0.00 0.00 0.00 1.98
4015 4068 5.587844 CCAGCAAACTACATCAAAGCTATCT 59.412 40.000 0.00 0.00 0.00 1.98
4016 4069 5.355350 ACCAGCAAACTACATCAAAGCTATC 59.645 40.000 0.00 0.00 0.00 2.08
4017 4070 5.256474 ACCAGCAAACTACATCAAAGCTAT 58.744 37.500 0.00 0.00 0.00 2.97
4018 4071 4.651778 ACCAGCAAACTACATCAAAGCTA 58.348 39.130 0.00 0.00 0.00 3.32
4019 4072 3.490348 ACCAGCAAACTACATCAAAGCT 58.510 40.909 0.00 0.00 0.00 3.74
4020 4073 3.667960 CGACCAGCAAACTACATCAAAGC 60.668 47.826 0.00 0.00 0.00 3.51
4021 4074 4.070581 CGACCAGCAAACTACATCAAAG 57.929 45.455 0.00 0.00 0.00 2.77
4074 4127 1.322442 AGAACTCCAGGTTTTGCAGC 58.678 50.000 0.00 0.00 38.41 5.25
4112 4165 0.942252 AAAACAAAGTCCGGCGAGTC 59.058 50.000 9.30 0.00 0.00 3.36
4196 4250 6.321181 TGCAAACACAGAACTAGAAAAAGGAT 59.679 34.615 0.00 0.00 0.00 3.24
4225 4279 5.048013 CCACTTTGGTTCAGGGTTATTTCTC 60.048 44.000 0.00 0.00 31.35 2.87
4329 4383 7.677511 GCCCAAGAGAAATTCTAACGATCTTTC 60.678 40.741 0.00 0.00 34.14 2.62
4340 4394 5.206587 AGCATATTGCCCAAGAGAAATTCT 58.793 37.500 0.00 0.00 46.52 2.40
4362 4416 5.747565 TCAAACATAGCAGTTCGAAACAAG 58.252 37.500 0.00 0.00 0.00 3.16
4366 4420 4.576873 TGGTTCAAACATAGCAGTTCGAAA 59.423 37.500 0.00 0.00 27.35 3.46
4369 4423 3.667960 GCTGGTTCAAACATAGCAGTTCG 60.668 47.826 13.27 0.00 40.89 3.95
4404 4460 4.566907 CCGGGGTCATCCTCTTTTTCTAAA 60.567 45.833 0.00 0.00 35.33 1.85
4405 4461 3.054655 CCGGGGTCATCCTCTTTTTCTAA 60.055 47.826 0.00 0.00 35.33 2.10
4406 4462 2.504175 CCGGGGTCATCCTCTTTTTCTA 59.496 50.000 0.00 0.00 35.33 2.10
4407 4463 1.282157 CCGGGGTCATCCTCTTTTTCT 59.718 52.381 0.00 0.00 35.33 2.52
4408 4464 1.751437 CCGGGGTCATCCTCTTTTTC 58.249 55.000 0.00 0.00 35.33 2.29
4409 4465 0.323451 GCCGGGGTCATCCTCTTTTT 60.323 55.000 2.18 0.00 35.33 1.94
4410 4466 1.303282 GCCGGGGTCATCCTCTTTT 59.697 57.895 2.18 0.00 35.33 2.27
4411 4467 2.680370 GGCCGGGGTCATCCTCTTT 61.680 63.158 2.18 0.00 35.33 2.52
4412 4468 3.090532 GGCCGGGGTCATCCTCTT 61.091 66.667 2.18 0.00 35.33 2.85
4413 4469 4.095400 AGGCCGGGGTCATCCTCT 62.095 66.667 2.18 0.00 35.33 3.69
4414 4470 3.551407 GAGGCCGGGGTCATCCTC 61.551 72.222 2.18 5.59 38.40 3.71
4415 4471 4.414956 TGAGGCCGGGGTCATCCT 62.415 66.667 2.18 0.00 35.33 3.24
4416 4472 4.176752 GTGAGGCCGGGGTCATCC 62.177 72.222 2.18 0.00 0.00 3.51
4417 4473 2.666596 GATGTGAGGCCGGGGTCATC 62.667 65.000 2.18 5.46 0.00 2.92
4418 4474 2.692368 ATGTGAGGCCGGGGTCAT 60.692 61.111 2.18 0.00 0.00 3.06
4419 4475 3.399181 GATGTGAGGCCGGGGTCA 61.399 66.667 2.18 0.00 0.00 4.02
4420 4476 3.083997 AGATGTGAGGCCGGGGTC 61.084 66.667 2.18 0.00 0.00 4.46
4421 4477 3.402681 CAGATGTGAGGCCGGGGT 61.403 66.667 2.18 0.00 0.00 4.95
4422 4478 4.181010 CCAGATGTGAGGCCGGGG 62.181 72.222 2.18 0.00 0.00 5.73
4423 4479 4.181010 CCCAGATGTGAGGCCGGG 62.181 72.222 2.18 0.00 0.00 5.73
4424 4480 3.083349 TCCCAGATGTGAGGCCGG 61.083 66.667 0.00 0.00 0.00 6.13
4425 4481 1.406065 ATCTCCCAGATGTGAGGCCG 61.406 60.000 0.00 0.00 32.80 6.13
4426 4482 0.108207 CATCTCCCAGATGTGAGGCC 59.892 60.000 0.00 0.00 45.33 5.19
4427 4483 3.702147 CATCTCCCAGATGTGAGGC 57.298 57.895 5.48 0.00 45.33 4.70
4434 4490 1.350351 GGCAGCATACATCTCCCAGAT 59.650 52.381 0.00 0.00 34.74 2.90
4435 4491 0.761187 GGCAGCATACATCTCCCAGA 59.239 55.000 0.00 0.00 0.00 3.86
4436 4492 0.471191 TGGCAGCATACATCTCCCAG 59.529 55.000 0.00 0.00 0.00 4.45
4437 4493 1.142936 ATGGCAGCATACATCTCCCA 58.857 50.000 0.00 0.00 0.00 4.37
4438 4494 2.283145 AATGGCAGCATACATCTCCC 57.717 50.000 0.00 0.00 0.00 4.30
4439 4495 5.972107 ATAAAATGGCAGCATACATCTCC 57.028 39.130 0.00 0.00 0.00 3.71
4440 4496 6.973843 TCAATAAAATGGCAGCATACATCTC 58.026 36.000 0.00 0.00 0.00 2.75
4441 4497 6.964807 TCAATAAAATGGCAGCATACATCT 57.035 33.333 0.00 0.00 0.00 2.90
4442 4498 9.865321 ATAATCAATAAAATGGCAGCATACATC 57.135 29.630 0.00 0.00 0.00 3.06
4444 4500 9.695526 GAATAATCAATAAAATGGCAGCATACA 57.304 29.630 0.00 0.00 0.00 2.29
4445 4501 9.918630 AGAATAATCAATAAAATGGCAGCATAC 57.081 29.630 0.00 0.00 0.00 2.39
4447 4503 7.811236 CGAGAATAATCAATAAAATGGCAGCAT 59.189 33.333 0.00 0.00 0.00 3.79
4448 4504 7.013178 TCGAGAATAATCAATAAAATGGCAGCA 59.987 33.333 0.00 0.00 0.00 4.41
4449 4505 7.362662 TCGAGAATAATCAATAAAATGGCAGC 58.637 34.615 0.00 0.00 0.00 5.25
4450 4506 8.019669 CCTCGAGAATAATCAATAAAATGGCAG 58.980 37.037 15.71 0.00 0.00 4.85
4451 4507 7.719193 TCCTCGAGAATAATCAATAAAATGGCA 59.281 33.333 15.71 0.00 0.00 4.92
4452 4508 8.017946 GTCCTCGAGAATAATCAATAAAATGGC 58.982 37.037 15.71 0.00 0.00 4.40
4453 4509 8.507249 GGTCCTCGAGAATAATCAATAAAATGG 58.493 37.037 15.71 0.00 0.00 3.16
4454 4510 9.277783 AGGTCCTCGAGAATAATCAATAAAATG 57.722 33.333 15.71 0.00 0.00 2.32
4455 4511 9.853177 AAGGTCCTCGAGAATAATCAATAAAAT 57.147 29.630 15.71 0.00 0.00 1.82
4457 4513 9.760077 GTAAGGTCCTCGAGAATAATCAATAAA 57.240 33.333 15.71 0.00 0.00 1.40
4458 4514 8.920174 TGTAAGGTCCTCGAGAATAATCAATAA 58.080 33.333 15.71 0.00 0.00 1.40
4459 4515 8.473358 TGTAAGGTCCTCGAGAATAATCAATA 57.527 34.615 15.71 0.00 0.00 1.90
4460 4516 7.361457 TGTAAGGTCCTCGAGAATAATCAAT 57.639 36.000 15.71 0.00 0.00 2.57
4461 4517 6.785337 TGTAAGGTCCTCGAGAATAATCAA 57.215 37.500 15.71 0.00 0.00 2.57
4462 4518 6.785337 TTGTAAGGTCCTCGAGAATAATCA 57.215 37.500 15.71 2.16 0.00 2.57
4463 4519 7.266400 ACTTTGTAAGGTCCTCGAGAATAATC 58.734 38.462 15.71 0.00 0.00 1.75
4464 4520 7.184067 ACTTTGTAAGGTCCTCGAGAATAAT 57.816 36.000 15.71 0.00 0.00 1.28
4465 4521 6.600882 ACTTTGTAAGGTCCTCGAGAATAA 57.399 37.500 15.71 0.00 0.00 1.40
4466 4522 6.888632 ACTACTTTGTAAGGTCCTCGAGAATA 59.111 38.462 15.71 0.00 0.00 1.75
4467 4523 5.715753 ACTACTTTGTAAGGTCCTCGAGAAT 59.284 40.000 15.71 0.00 0.00 2.40
4468 4524 5.075493 ACTACTTTGTAAGGTCCTCGAGAA 58.925 41.667 15.71 0.00 0.00 2.87
4469 4525 4.660168 ACTACTTTGTAAGGTCCTCGAGA 58.340 43.478 15.71 0.00 0.00 4.04
4470 4526 5.413833 TGTACTACTTTGTAAGGTCCTCGAG 59.586 44.000 5.13 5.13 0.00 4.04
4471 4527 5.316167 TGTACTACTTTGTAAGGTCCTCGA 58.684 41.667 0.00 0.00 0.00 4.04
4472 4528 5.633830 TGTACTACTTTGTAAGGTCCTCG 57.366 43.478 0.00 0.00 0.00 4.63
4473 4529 6.752168 TGTTGTACTACTTTGTAAGGTCCTC 58.248 40.000 8.88 0.00 0.00 3.71
4474 4530 6.736110 TGTTGTACTACTTTGTAAGGTCCT 57.264 37.500 8.88 0.00 0.00 3.85
4475 4531 7.974482 ATTGTTGTACTACTTTGTAAGGTCC 57.026 36.000 8.88 0.00 0.00 4.46
4482 4538 9.772973 TTCAGACATATTGTTGTACTACTTTGT 57.227 29.630 8.88 6.86 0.00 2.83
4485 4541 9.601217 GGATTCAGACATATTGTTGTACTACTT 57.399 33.333 8.88 0.00 0.00 2.24
4486 4542 7.921214 CGGATTCAGACATATTGTTGTACTACT 59.079 37.037 8.88 0.00 0.00 2.57
4487 4543 7.306632 GCGGATTCAGACATATTGTTGTACTAC 60.307 40.741 0.05 0.05 0.00 2.73
4488 4544 6.700081 GCGGATTCAGACATATTGTTGTACTA 59.300 38.462 0.00 0.00 0.00 1.82
4489 4545 5.523916 GCGGATTCAGACATATTGTTGTACT 59.476 40.000 0.00 0.00 0.00 2.73
4490 4546 5.277345 GGCGGATTCAGACATATTGTTGTAC 60.277 44.000 0.00 0.00 0.00 2.90
4491 4547 4.814234 GGCGGATTCAGACATATTGTTGTA 59.186 41.667 0.00 0.00 0.00 2.41
4492 4548 3.627577 GGCGGATTCAGACATATTGTTGT 59.372 43.478 0.00 0.00 0.00 3.32
4493 4549 3.627123 TGGCGGATTCAGACATATTGTTG 59.373 43.478 0.00 0.00 0.00 3.33
4494 4550 3.884895 TGGCGGATTCAGACATATTGTT 58.115 40.909 0.00 0.00 0.00 2.83
4495 4551 3.558931 TGGCGGATTCAGACATATTGT 57.441 42.857 0.00 0.00 0.00 2.71
4496 4552 4.321718 AGATGGCGGATTCAGACATATTG 58.678 43.478 5.04 0.00 37.49 1.90
4497 4553 4.630644 AGATGGCGGATTCAGACATATT 57.369 40.909 5.04 0.00 37.49 1.28
4498 4554 4.040829 TCAAGATGGCGGATTCAGACATAT 59.959 41.667 5.04 0.00 37.49 1.78
4499 4555 3.387699 TCAAGATGGCGGATTCAGACATA 59.612 43.478 5.04 0.00 37.49 2.29
4500 4556 2.171237 TCAAGATGGCGGATTCAGACAT 59.829 45.455 4.70 4.70 40.62 3.06
4501 4557 1.554617 TCAAGATGGCGGATTCAGACA 59.445 47.619 0.00 0.00 0.00 3.41
4502 4558 1.936547 GTCAAGATGGCGGATTCAGAC 59.063 52.381 0.00 0.00 0.00 3.51
4503 4559 1.554617 TGTCAAGATGGCGGATTCAGA 59.445 47.619 0.00 0.00 0.00 3.27
4504 4560 2.028420 TGTCAAGATGGCGGATTCAG 57.972 50.000 0.00 0.00 0.00 3.02
4505 4561 2.083774 GTTGTCAAGATGGCGGATTCA 58.916 47.619 0.00 0.00 0.00 2.57
4506 4562 2.083774 TGTTGTCAAGATGGCGGATTC 58.916 47.619 0.00 0.00 0.00 2.52
4507 4563 2.198827 TGTTGTCAAGATGGCGGATT 57.801 45.000 0.00 0.00 0.00 3.01
4508 4564 2.092753 AGATGTTGTCAAGATGGCGGAT 60.093 45.455 0.00 0.00 0.00 4.18
4509 4565 1.278985 AGATGTTGTCAAGATGGCGGA 59.721 47.619 0.00 0.00 0.00 5.54
4510 4566 1.399440 CAGATGTTGTCAAGATGGCGG 59.601 52.381 0.00 0.00 0.00 6.13
4511 4567 2.079158 ACAGATGTTGTCAAGATGGCG 58.921 47.619 0.00 0.00 33.87 5.69
4512 4568 2.415090 GCACAGATGTTGTCAAGATGGC 60.415 50.000 0.00 0.00 38.16 4.40
4513 4569 2.163010 GGCACAGATGTTGTCAAGATGG 59.837 50.000 0.00 0.00 38.16 3.51
4514 4570 3.079578 AGGCACAGATGTTGTCAAGATG 58.920 45.455 0.00 0.00 38.16 2.90
4515 4571 3.430042 AGGCACAGATGTTGTCAAGAT 57.570 42.857 0.00 0.00 38.16 2.40
4516 4572 2.936919 AGGCACAGATGTTGTCAAGA 57.063 45.000 0.00 0.00 38.16 3.02
4517 4573 3.668447 AGTAGGCACAGATGTTGTCAAG 58.332 45.455 0.00 0.00 38.16 3.02
4518 4574 3.557054 GGAGTAGGCACAGATGTTGTCAA 60.557 47.826 0.00 0.00 38.16 3.18
4519 4575 2.028112 GGAGTAGGCACAGATGTTGTCA 60.028 50.000 0.00 0.00 38.16 3.58
4520 4576 2.028112 TGGAGTAGGCACAGATGTTGTC 60.028 50.000 0.00 0.00 38.16 3.18
4521 4577 1.977854 TGGAGTAGGCACAGATGTTGT 59.022 47.619 0.00 0.00 41.94 3.32
4522 4578 2.768253 TGGAGTAGGCACAGATGTTG 57.232 50.000 0.00 0.00 0.00 3.33
4523 4579 3.370953 GGATTGGAGTAGGCACAGATGTT 60.371 47.826 0.00 0.00 0.00 2.71
4524 4580 2.171448 GGATTGGAGTAGGCACAGATGT 59.829 50.000 0.00 0.00 0.00 3.06
4525 4581 2.171237 TGGATTGGAGTAGGCACAGATG 59.829 50.000 0.00 0.00 0.00 2.90
4526 4582 2.481441 TGGATTGGAGTAGGCACAGAT 58.519 47.619 0.00 0.00 0.00 2.90
4527 4583 1.951209 TGGATTGGAGTAGGCACAGA 58.049 50.000 0.00 0.00 0.00 3.41
4528 4584 4.040829 TCATATGGATTGGAGTAGGCACAG 59.959 45.833 2.13 0.00 0.00 3.66
4529 4585 3.973305 TCATATGGATTGGAGTAGGCACA 59.027 43.478 2.13 0.00 0.00 4.57
4530 4586 4.623932 TCATATGGATTGGAGTAGGCAC 57.376 45.455 2.13 0.00 0.00 5.01
4531 4587 4.845796 TCATCATATGGATTGGAGTAGGCA 59.154 41.667 2.13 0.00 32.57 4.75
4532 4588 5.426689 TCATCATATGGATTGGAGTAGGC 57.573 43.478 2.13 0.00 32.57 3.93
4533 4589 6.883217 CCTTTCATCATATGGATTGGAGTAGG 59.117 42.308 2.13 0.00 32.57 3.18
4534 4590 7.605691 GTCCTTTCATCATATGGATTGGAGTAG 59.394 40.741 2.13 0.00 32.57 2.57
4535 4591 7.072328 TGTCCTTTCATCATATGGATTGGAGTA 59.928 37.037 2.13 0.00 32.57 2.59
4536 4592 6.126390 TGTCCTTTCATCATATGGATTGGAGT 60.126 38.462 2.13 0.00 32.57 3.85
4537 4593 6.301486 TGTCCTTTCATCATATGGATTGGAG 58.699 40.000 2.13 2.07 32.57 3.86
4538 4594 6.264771 TGTCCTTTCATCATATGGATTGGA 57.735 37.500 2.13 1.50 32.57 3.53
4539 4595 6.717997 TGATGTCCTTTCATCATATGGATTGG 59.282 38.462 2.13 0.00 45.89 3.16
4540 4596 7.754851 TGATGTCCTTTCATCATATGGATTG 57.245 36.000 2.13 0.00 45.89 2.67
4550 4606 5.220931 GGTGTAGCATTGATGTCCTTTCATC 60.221 44.000 0.00 0.00 42.95 2.92
4551 4607 4.641989 GGTGTAGCATTGATGTCCTTTCAT 59.358 41.667 0.00 0.00 0.00 2.57
4552 4608 4.009675 GGTGTAGCATTGATGTCCTTTCA 58.990 43.478 0.00 0.00 0.00 2.69
4553 4609 4.265073 AGGTGTAGCATTGATGTCCTTTC 58.735 43.478 0.00 0.00 0.00 2.62
4554 4610 4.307032 AGGTGTAGCATTGATGTCCTTT 57.693 40.909 0.00 0.00 0.00 3.11
4555 4611 4.680708 CGTAGGTGTAGCATTGATGTCCTT 60.681 45.833 0.00 0.00 0.00 3.36
4556 4612 3.181475 CGTAGGTGTAGCATTGATGTCCT 60.181 47.826 0.00 0.00 0.00 3.85
4557 4613 3.123804 CGTAGGTGTAGCATTGATGTCC 58.876 50.000 0.00 0.00 0.00 4.02
4558 4614 3.782046 ACGTAGGTGTAGCATTGATGTC 58.218 45.455 0.00 0.00 0.00 3.06
4559 4615 3.887621 ACGTAGGTGTAGCATTGATGT 57.112 42.857 0.00 0.00 0.00 3.06
4568 4624 7.448588 CGTATAGATAGCTACGTAGGTGTAG 57.551 44.000 31.93 13.53 43.76 2.74
4588 4644 9.357652 ACGTCAACTGTTACATTAATTACGTAT 57.642 29.630 0.00 0.00 36.97 3.06
4589 4645 8.637704 CACGTCAACTGTTACATTAATTACGTA 58.362 33.333 0.00 0.00 36.97 3.57
4590 4646 7.359431 CCACGTCAACTGTTACATTAATTACGT 60.359 37.037 0.00 0.00 39.02 3.57
4591 4647 6.951530 CCACGTCAACTGTTACATTAATTACG 59.048 38.462 0.00 0.00 0.00 3.18
4592 4648 6.739550 GCCACGTCAACTGTTACATTAATTAC 59.260 38.462 0.00 0.00 0.00 1.89
4593 4649 6.128227 GGCCACGTCAACTGTTACATTAATTA 60.128 38.462 0.00 0.00 0.00 1.40
4594 4650 5.335348 GGCCACGTCAACTGTTACATTAATT 60.335 40.000 0.00 0.00 0.00 1.40
4595 4651 4.155280 GGCCACGTCAACTGTTACATTAAT 59.845 41.667 0.00 0.00 0.00 1.40
4596 4652 3.499157 GGCCACGTCAACTGTTACATTAA 59.501 43.478 0.00 0.00 0.00 1.40
4597 4653 3.068560 GGCCACGTCAACTGTTACATTA 58.931 45.455 0.00 0.00 0.00 1.90
4598 4654 1.877443 GGCCACGTCAACTGTTACATT 59.123 47.619 0.00 0.00 0.00 2.71
4599 4655 1.071699 AGGCCACGTCAACTGTTACAT 59.928 47.619 5.01 0.00 0.00 2.29
4600 4656 0.466543 AGGCCACGTCAACTGTTACA 59.533 50.000 5.01 0.00 0.00 2.41
4601 4657 1.589803 AAGGCCACGTCAACTGTTAC 58.410 50.000 5.01 0.00 0.00 2.50
4602 4658 2.335316 AAAGGCCACGTCAACTGTTA 57.665 45.000 5.01 0.00 0.00 2.41
4603 4659 1.470051 AAAAGGCCACGTCAACTGTT 58.530 45.000 5.01 0.00 0.00 3.16
4604 4660 1.134175 CAAAAAGGCCACGTCAACTGT 59.866 47.619 5.01 0.00 0.00 3.55
4605 4661 1.134175 ACAAAAAGGCCACGTCAACTG 59.866 47.619 5.01 0.00 0.00 3.16
4606 4662 1.470051 ACAAAAAGGCCACGTCAACT 58.530 45.000 5.01 0.00 0.00 3.16
4607 4663 2.287393 AACAAAAAGGCCACGTCAAC 57.713 45.000 5.01 0.00 0.00 3.18
4608 4664 3.280295 TCTAACAAAAAGGCCACGTCAA 58.720 40.909 5.01 0.00 0.00 3.18
4609 4665 2.875933 CTCTAACAAAAAGGCCACGTCA 59.124 45.455 5.01 0.00 0.00 4.35
4610 4666 2.225727 CCTCTAACAAAAAGGCCACGTC 59.774 50.000 5.01 0.00 0.00 4.34
4611 4667 2.158726 TCCTCTAACAAAAAGGCCACGT 60.159 45.455 5.01 0.00 0.00 4.49
4612 4668 2.500229 TCCTCTAACAAAAAGGCCACG 58.500 47.619 5.01 0.00 0.00 4.94
4613 4669 4.929819 TTTCCTCTAACAAAAAGGCCAC 57.070 40.909 5.01 0.00 0.00 5.01
4614 4670 5.144100 TGATTTCCTCTAACAAAAAGGCCA 58.856 37.500 5.01 0.00 0.00 5.36
4615 4671 5.336770 CCTGATTTCCTCTAACAAAAAGGCC 60.337 44.000 0.00 0.00 0.00 5.19
4616 4672 5.336770 CCCTGATTTCCTCTAACAAAAAGGC 60.337 44.000 0.00 0.00 0.00 4.35
4617 4673 5.185828 CCCCTGATTTCCTCTAACAAAAAGG 59.814 44.000 0.00 0.00 0.00 3.11
4618 4674 6.010219 TCCCCTGATTTCCTCTAACAAAAAG 58.990 40.000 0.00 0.00 0.00 2.27
4619 4675 5.959512 TCCCCTGATTTCCTCTAACAAAAA 58.040 37.500 0.00 0.00 0.00 1.94
4620 4676 5.516591 CCTCCCCTGATTTCCTCTAACAAAA 60.517 44.000 0.00 0.00 0.00 2.44
4621 4677 4.018415 CCTCCCCTGATTTCCTCTAACAAA 60.018 45.833 0.00 0.00 0.00 2.83
4622 4678 3.523564 CCTCCCCTGATTTCCTCTAACAA 59.476 47.826 0.00 0.00 0.00 2.83
4623 4679 3.115390 CCTCCCCTGATTTCCTCTAACA 58.885 50.000 0.00 0.00 0.00 2.41
4624 4680 2.439880 CCCTCCCCTGATTTCCTCTAAC 59.560 54.545 0.00 0.00 0.00 2.34
4625 4681 2.632360 CCCCTCCCCTGATTTCCTCTAA 60.632 54.545 0.00 0.00 0.00 2.10
4626 4682 1.061346 CCCCTCCCCTGATTTCCTCTA 60.061 57.143 0.00 0.00 0.00 2.43
4627 4683 0.327964 CCCCTCCCCTGATTTCCTCT 60.328 60.000 0.00 0.00 0.00 3.69
4628 4684 1.356494 CCCCCTCCCCTGATTTCCTC 61.356 65.000 0.00 0.00 0.00 3.71
4629 4685 1.309102 CCCCCTCCCCTGATTTCCT 60.309 63.158 0.00 0.00 0.00 3.36
4630 4686 3.346870 CCCCCTCCCCTGATTTCC 58.653 66.667 0.00 0.00 0.00 3.13
4647 4703 2.283604 ATTTCAACGGGGTGGGCC 60.284 61.111 0.00 0.00 0.00 5.80
4648 4704 1.595093 CTGATTTCAACGGGGTGGGC 61.595 60.000 0.00 0.00 0.00 5.36
4649 4705 0.965363 CCTGATTTCAACGGGGTGGG 60.965 60.000 0.00 0.00 0.00 4.61
4650 4706 0.965363 CCCTGATTTCAACGGGGTGG 60.965 60.000 0.00 0.00 45.91 4.61
4651 4707 2.566824 CCCTGATTTCAACGGGGTG 58.433 57.895 0.00 0.00 45.91 4.61
4654 4710 2.406616 CGCCCCTGATTTCAACGGG 61.407 63.158 7.67 7.67 38.13 5.28
4655 4711 2.406616 CCGCCCCTGATTTCAACGG 61.407 63.158 0.00 0.00 0.00 4.44
4656 4712 1.674322 ACCGCCCCTGATTTCAACG 60.674 57.895 0.00 0.00 0.00 4.10
4657 4713 1.595093 CCACCGCCCCTGATTTCAAC 61.595 60.000 0.00 0.00 0.00 3.18
4658 4714 1.304052 CCACCGCCCCTGATTTCAA 60.304 57.895 0.00 0.00 0.00 2.69
4659 4715 1.784301 TTCCACCGCCCCTGATTTCA 61.784 55.000 0.00 0.00 0.00 2.69
4660 4716 1.001393 TTCCACCGCCCCTGATTTC 60.001 57.895 0.00 0.00 0.00 2.17
4661 4717 1.000896 CTTCCACCGCCCCTGATTT 60.001 57.895 0.00 0.00 0.00 2.17
4662 4718 2.677228 CTTCCACCGCCCCTGATT 59.323 61.111 0.00 0.00 0.00 2.57
4663 4719 3.411517 CCTTCCACCGCCCCTGAT 61.412 66.667 0.00 0.00 0.00 2.90
4664 4720 4.974438 ACCTTCCACCGCCCCTGA 62.974 66.667 0.00 0.00 0.00 3.86
4665 4721 2.132089 TAAACCTTCCACCGCCCCTG 62.132 60.000 0.00 0.00 0.00 4.45
4666 4722 1.848886 CTAAACCTTCCACCGCCCCT 61.849 60.000 0.00 0.00 0.00 4.79
4667 4723 1.378119 CTAAACCTTCCACCGCCCC 60.378 63.158 0.00 0.00 0.00 5.80
4668 4724 0.251033 AACTAAACCTTCCACCGCCC 60.251 55.000 0.00 0.00 0.00 6.13
4669 4725 2.353323 CTAACTAAACCTTCCACCGCC 58.647 52.381 0.00 0.00 0.00 6.13
4670 4726 2.353323 CCTAACTAAACCTTCCACCGC 58.647 52.381 0.00 0.00 0.00 5.68
4671 4727 2.568509 TCCCTAACTAAACCTTCCACCG 59.431 50.000 0.00 0.00 0.00 4.94
4672 4728 4.042560 AGTTCCCTAACTAAACCTTCCACC 59.957 45.833 0.00 0.00 44.26 4.61
4673 4729 5.238624 AGTTCCCTAACTAAACCTTCCAC 57.761 43.478 0.00 0.00 44.26 4.02
4674 4730 5.917545 AAGTTCCCTAACTAAACCTTCCA 57.082 39.130 0.00 0.00 45.37 3.53
4675 4731 5.410746 CGAAAGTTCCCTAACTAAACCTTCC 59.589 44.000 0.00 0.00 45.37 3.46
4676 4732 5.994054 ACGAAAGTTCCCTAACTAAACCTTC 59.006 40.000 0.00 0.00 45.37 3.46
4677 4733 5.933617 ACGAAAGTTCCCTAACTAAACCTT 58.066 37.500 0.00 0.00 45.37 3.50
4678 4734 5.557576 ACGAAAGTTCCCTAACTAAACCT 57.442 39.130 0.00 0.00 45.37 3.50
4679 4735 7.154656 TCTTACGAAAGTTCCCTAACTAAACC 58.845 38.462 0.00 0.00 45.37 3.27
4680 4736 8.768957 ATCTTACGAAAGTTCCCTAACTAAAC 57.231 34.615 0.00 0.00 45.37 2.01
4682 4738 9.860898 GTAATCTTACGAAAGTTCCCTAACTAA 57.139 33.333 0.00 0.00 45.37 2.24
4709 4765 4.108336 GCTACACCTACGTAAAAGCCTAC 58.892 47.826 0.00 0.00 0.00 3.18
4710 4766 3.763360 TGCTACACCTACGTAAAAGCCTA 59.237 43.478 0.00 0.00 0.00 3.93
4711 4767 2.564062 TGCTACACCTACGTAAAAGCCT 59.436 45.455 0.00 0.00 0.00 4.58
4712 4768 2.963432 TGCTACACCTACGTAAAAGCC 58.037 47.619 0.00 0.00 0.00 4.35
4713 4769 5.541098 AAATGCTACACCTACGTAAAAGC 57.459 39.130 0.00 2.40 0.00 3.51
4714 4770 7.577979 TCAAAAATGCTACACCTACGTAAAAG 58.422 34.615 0.00 0.00 0.00 2.27
4715 4771 7.493743 TCAAAAATGCTACACCTACGTAAAA 57.506 32.000 0.00 0.00 0.00 1.52
4716 4772 7.388224 TCATCAAAAATGCTACACCTACGTAAA 59.612 33.333 0.00 0.00 0.00 2.01
4717 4773 6.874664 TCATCAAAAATGCTACACCTACGTAA 59.125 34.615 0.00 0.00 0.00 3.18
4718 4774 6.399743 TCATCAAAAATGCTACACCTACGTA 58.600 36.000 0.00 0.00 0.00 3.57
4719 4775 5.242434 TCATCAAAAATGCTACACCTACGT 58.758 37.500 0.00 0.00 0.00 3.57
4720 4776 5.794687 TCATCAAAAATGCTACACCTACG 57.205 39.130 0.00 0.00 0.00 3.51
4721 4777 6.021596 CGTTCATCAAAAATGCTACACCTAC 58.978 40.000 0.00 0.00 0.00 3.18
4722 4778 5.123186 CCGTTCATCAAAAATGCTACACCTA 59.877 40.000 0.00 0.00 0.00 3.08
4723 4779 4.082787 CCGTTCATCAAAAATGCTACACCT 60.083 41.667 0.00 0.00 0.00 4.00
4724 4780 4.165779 CCGTTCATCAAAAATGCTACACC 58.834 43.478 0.00 0.00 0.00 4.16
4725 4781 4.165779 CCCGTTCATCAAAAATGCTACAC 58.834 43.478 0.00 0.00 0.00 2.90
4726 4782 3.823873 ACCCGTTCATCAAAAATGCTACA 59.176 39.130 0.00 0.00 0.00 2.74
4727 4783 4.165779 CACCCGTTCATCAAAAATGCTAC 58.834 43.478 0.00 0.00 0.00 3.58
4728 4784 3.366883 GCACCCGTTCATCAAAAATGCTA 60.367 43.478 0.00 0.00 0.00 3.49
4729 4785 2.610232 GCACCCGTTCATCAAAAATGCT 60.610 45.455 0.00 0.00 0.00 3.79
4730 4786 1.726248 GCACCCGTTCATCAAAAATGC 59.274 47.619 0.00 0.00 0.00 3.56
4731 4787 1.984990 CGCACCCGTTCATCAAAAATG 59.015 47.619 0.00 0.00 0.00 2.32
4732 4788 1.883275 TCGCACCCGTTCATCAAAAAT 59.117 42.857 0.00 0.00 35.54 1.82
4733 4789 1.265635 CTCGCACCCGTTCATCAAAAA 59.734 47.619 0.00 0.00 35.54 1.94
4734 4790 0.871722 CTCGCACCCGTTCATCAAAA 59.128 50.000 0.00 0.00 35.54 2.44
4735 4791 1.573829 GCTCGCACCCGTTCATCAAA 61.574 55.000 0.00 0.00 35.54 2.69
4736 4792 2.032634 GCTCGCACCCGTTCATCAA 61.033 57.895 0.00 0.00 35.54 2.57
4737 4793 2.434185 GCTCGCACCCGTTCATCA 60.434 61.111 0.00 0.00 35.54 3.07
4738 4794 2.125512 AGCTCGCACCCGTTCATC 60.126 61.111 0.00 0.00 35.54 2.92
4739 4795 2.434884 CAGCTCGCACCCGTTCAT 60.435 61.111 0.00 0.00 35.54 2.57
4740 4796 4.680237 CCAGCTCGCACCCGTTCA 62.680 66.667 0.00 0.00 35.54 3.18
4747 4803 1.103398 ATATTTGGCCCAGCTCGCAC 61.103 55.000 0.00 0.00 0.00 5.34
4748 4804 0.819259 GATATTTGGCCCAGCTCGCA 60.819 55.000 0.00 0.00 0.00 5.10
4749 4805 0.819259 TGATATTTGGCCCAGCTCGC 60.819 55.000 0.00 0.00 0.00 5.03
4750 4806 1.605710 CTTGATATTTGGCCCAGCTCG 59.394 52.381 0.00 0.00 0.00 5.03
4751 4807 2.936202 TCTTGATATTTGGCCCAGCTC 58.064 47.619 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.