Multiple sequence alignment - TraesCS7A01G211400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G211400 chr7A 100.000 4962 0 0 1 4962 174217776 174212815 0.000000e+00 9164.0
1 TraesCS7A01G211400 chr7A 100.000 48 0 0 4132 4179 672778887 672778934 6.840000e-14 89.8
2 TraesCS7A01G211400 chr7D 96.799 1812 54 4 2214 4022 171321173 171319363 0.000000e+00 3022.0
3 TraesCS7A01G211400 chr7D 89.702 1107 70 20 943 2028 171322276 171321193 0.000000e+00 1373.0
4 TraesCS7A01G211400 chr7D 88.734 719 51 8 1 706 171323483 171322782 0.000000e+00 852.0
5 TraesCS7A01G211400 chr7D 93.240 429 25 4 4460 4885 171316400 171315973 3.260000e-176 628.0
6 TraesCS7A01G211400 chr7D 88.608 395 28 4 4081 4462 171317575 171317185 9.730000e-127 464.0
7 TraesCS7A01G211400 chr7D 96.203 158 3 1 798 952 171322757 171322600 6.370000e-64 255.0
8 TraesCS7A01G211400 chr7D 100.000 49 0 0 4911 4959 171315984 171315936 1.900000e-14 91.6
9 TraesCS7A01G211400 chr7D 100.000 48 0 0 4133 4180 26004266 26004313 6.840000e-14 89.8
10 TraesCS7A01G211400 chr7D 93.220 59 4 0 4405 4463 78895335 78895393 2.460000e-13 87.9
11 TraesCS7A01G211400 chr7D 96.000 50 1 1 754 803 171322839 171322791 4.120000e-11 80.5
12 TraesCS7A01G211400 chr7B 91.021 2272 104 30 2157 4402 137801157 137798960 0.000000e+00 2974.0
13 TraesCS7A01G211400 chr7B 91.467 750 33 8 828 1562 137802307 137801574 0.000000e+00 1002.0
14 TraesCS7A01G211400 chr7B 85.902 532 46 14 193 706 137804221 137803701 1.570000e-149 540.0
15 TraesCS7A01G211400 chr7B 91.732 254 17 2 1781 2030 137801429 137801176 2.840000e-92 350.0
16 TraesCS7A01G211400 chr7B 88.934 244 25 2 4460 4702 137798023 137797781 2.900000e-77 300.0
17 TraesCS7A01G211400 chr7B 86.735 196 20 6 4701 4892 663743412 663743605 3.890000e-51 213.0
18 TraesCS7A01G211400 chr7B 85.714 98 10 2 706 803 137803803 137803710 3.160000e-17 100.0
19 TraesCS7A01G211400 chr7B 93.750 48 1 2 2182 2228 210224094 210224048 2.480000e-08 71.3
20 TraesCS7A01G211400 chr2B 89.615 260 27 0 2241 2500 64070439 64070698 1.030000e-86 331.0
21 TraesCS7A01G211400 chr2B 88.846 260 29 0 2241 2500 64206757 64206498 2.230000e-83 320.0
22 TraesCS7A01G211400 chr2B 88.462 260 30 0 2241 2500 63855040 63855299 1.040000e-81 315.0
23 TraesCS7A01G211400 chr2B 86.667 270 34 2 2232 2500 64230241 64229973 1.040000e-76 298.0
24 TraesCS7A01G211400 chr2B 82.647 340 44 3 993 1317 63849337 63849676 2.260000e-73 287.0
25 TraesCS7A01G211400 chr2B 85.240 271 40 0 995 1265 64212615 64212345 3.780000e-71 279.0
26 TraesCS7A01G211400 chr2B 87.963 216 26 0 2578 2793 64229860 64229645 6.370000e-64 255.0
27 TraesCS7A01G211400 chr2B 82.528 269 47 0 997 1265 64764558 64764290 2.310000e-58 237.0
28 TraesCS7A01G211400 chr2B 80.669 269 48 1 997 1265 63820474 63820738 6.510000e-49 206.0
29 TraesCS7A01G211400 chr2B 100.000 50 0 0 4133 4182 748078446 748078397 5.290000e-15 93.5
30 TraesCS7A01G211400 chr2B 96.296 54 1 1 4127 4179 8358370 8358423 2.460000e-13 87.9
31 TraesCS7A01G211400 chr2B 94.643 56 2 1 4125 4179 761895283 761895228 8.850000e-13 86.1
32 TraesCS7A01G211400 chr2B 91.489 47 4 0 2182 2228 152311159 152311205 1.150000e-06 65.8
33 TraesCS7A01G211400 chr2D 82.920 363 44 8 995 1341 37028168 37027808 1.340000e-80 311.0
34 TraesCS7A01G211400 chr2D 80.938 341 49 6 997 1322 37041169 37040830 6.370000e-64 255.0
35 TraesCS7A01G211400 chr2D 92.453 159 9 3 4701 4857 9646279 9646122 1.800000e-54 224.0
36 TraesCS7A01G211400 chr2D 91.411 163 12 2 4701 4861 73403048 73402886 6.470000e-54 222.0
37 TraesCS7A01G211400 chr2D 90.798 163 13 2 4701 4861 526525121 526524959 3.010000e-52 217.0
38 TraesCS7A01G211400 chr2D 100.000 48 0 0 4135 4182 532347281 532347234 6.840000e-14 89.8
39 TraesCS7A01G211400 chr2A 87.692 260 32 0 2241 2500 41644182 41643923 2.240000e-78 303.0
40 TraesCS7A01G211400 chr6B 91.018 167 12 3 4698 4861 548811082 548811248 6.470000e-54 222.0
41 TraesCS7A01G211400 chr6B 89.041 73 4 4 2049 2121 57420619 57420687 2.460000e-13 87.9
42 TraesCS7A01G211400 chr6B 84.211 95 8 4 2045 2139 640975194 640975107 8.850000e-13 86.1
43 TraesCS7A01G211400 chr6B 86.667 75 8 2 2139 2212 457472810 457472883 1.140000e-11 82.4
44 TraesCS7A01G211400 chr6B 86.364 66 4 4 2182 2244 717007401 717007464 3.210000e-07 67.6
45 TraesCS7A01G211400 chr6B 91.489 47 4 0 2182 2228 493795063 493795109 1.150000e-06 65.8
46 TraesCS7A01G211400 chr6B 100.000 33 0 0 428 460 148467343 148467375 1.490000e-05 62.1
47 TraesCS7A01G211400 chr6A 90.798 163 13 2 4701 4861 5939240 5939078 3.010000e-52 217.0
48 TraesCS7A01G211400 chr6A 100.000 33 0 0 428 460 90943293 90943325 1.490000e-05 62.1
49 TraesCS7A01G211400 chr4D 89.205 176 15 4 4698 4869 351669914 351670089 3.010000e-52 217.0
50 TraesCS7A01G211400 chr4D 89.062 64 7 0 2165 2228 404908758 404908821 4.120000e-11 80.5
51 TraesCS7A01G211400 chr5D 88.268 179 17 4 4694 4869 436422569 436422392 1.400000e-50 211.0
52 TraesCS7A01G211400 chr1D 85.955 178 19 6 4462 4634 47330861 47331037 8.480000e-43 185.0
53 TraesCS7A01G211400 chr1D 100.000 29 0 0 428 456 360474524 360474552 2.000000e-03 54.7
54 TraesCS7A01G211400 chr1A 85.876 177 19 6 4463 4634 47212785 47212960 3.050000e-42 183.0
55 TraesCS7A01G211400 chr5A 86.585 164 18 3 4473 4634 441161832 441161993 1.420000e-40 178.0
56 TraesCS7A01G211400 chr5A 81.871 171 18 9 4460 4627 25065102 25065262 1.120000e-26 132.0
57 TraesCS7A01G211400 chr1B 84.358 179 20 7 4462 4634 67055063 67055239 8.540000e-38 169.0
58 TraesCS7A01G211400 chr3B 84.431 167 20 6 4464 4626 778705881 778706045 5.140000e-35 159.0
59 TraesCS7A01G211400 chr3B 91.935 62 5 0 4400 4461 189412789 189412850 2.460000e-13 87.9
60 TraesCS7A01G211400 chr4B 83.051 177 27 3 4460 4634 99596581 99596406 1.850000e-34 158.0
61 TraesCS7A01G211400 chrUn 96.364 55 0 2 4127 4179 212992325 212992379 6.840000e-14 89.8
62 TraesCS7A01G211400 chrUn 94.643 56 2 1 4125 4179 243196200 243196145 8.850000e-13 86.1
63 TraesCS7A01G211400 chr3A 84.444 90 14 0 2139 2228 79190528 79190439 6.840000e-14 89.8
64 TraesCS7A01G211400 chr3D 93.617 47 3 0 2182 2228 548254500 548254546 2.480000e-08 71.3
65 TraesCS7A01G211400 chr3D 85.938 64 8 1 4401 4463 345684 345621 3.210000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G211400 chr7A 174212815 174217776 4961 True 9164.000000 9164 100.000000 1 4962 1 chr7A.!!$R1 4961
1 TraesCS7A01G211400 chr7D 171315936 171323483 7547 True 845.762500 3022 93.660750 1 4959 8 chr7D.!!$R1 4958
2 TraesCS7A01G211400 chr7B 137797781 137804221 6440 True 877.666667 2974 89.128333 193 4702 6 chr7B.!!$R2 4509
3 TraesCS7A01G211400 chr2B 64229645 64230241 596 True 276.500000 298 87.315000 2232 2793 2 chr2B.!!$R6 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 681 0.027716 TCTCTCGCGCGTCATCTAAC 59.972 55.000 30.98 0.0 0.00 2.34 F
1464 3185 0.240145 TCTGCGGTAGTCTGACGTTG 59.760 55.000 1.52 0.0 0.00 4.10 F
1469 3190 0.731855 GGTAGTCTGACGTTGGCGAC 60.732 60.000 1.52 0.0 42.00 5.19 F
1633 3380 1.001633 GTTTCCGGTTCTCAGCAGGTA 59.998 52.381 0.00 0.0 0.00 3.08 F
1794 3553 1.195115 ATCACCATCGTGGCTACAGT 58.805 50.000 0.00 0.0 42.67 3.55 F
2472 4239 1.953686 CCGCCCAAAGAGAAAGTTCAA 59.046 47.619 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 3543 0.036671 GGTACACCCACTGTAGCCAC 60.037 60.000 0.00 0.00 44.82 5.01 R
2472 4239 0.108804 CGTTGCCATCTCCGTACACT 60.109 55.000 0.00 0.00 0.00 3.55 R
2697 4520 1.136305 CCCATTTGGCAATCAGCTCAG 59.864 52.381 0.00 0.00 44.79 3.35 R
3105 4929 4.366267 ACTTCCTGTGGACAAGAGGATAT 58.634 43.478 0.00 0.00 35.77 1.63 R
3753 5588 1.874231 TCAACCGCGAATTTGCTTGTA 59.126 42.857 15.65 2.90 0.00 2.41 R
4056 5891 1.420891 TGCCTACCAAAACGTTAGGGT 59.579 47.619 22.58 22.58 37.43 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.626743 ACGTAGTTGTGTAGACTGCCTT 59.373 45.455 0.00 0.00 37.78 4.35
34 35 3.069158 ACGTAGTTGTGTAGACTGCCTTT 59.931 43.478 0.00 0.00 37.78 3.11
35 36 3.428870 CGTAGTTGTGTAGACTGCCTTTG 59.571 47.826 0.00 0.00 0.00 2.77
38 39 5.031066 AGTTGTGTAGACTGCCTTTGTTA 57.969 39.130 0.00 0.00 0.00 2.41
43 44 2.568623 AGACTGCCTTTGTTACCTGG 57.431 50.000 0.00 0.00 0.00 4.45
50 51 2.751816 GCCTTTGTTACCTGGGACTTGT 60.752 50.000 0.00 0.00 0.00 3.16
86 87 1.598701 GCCGCTTCATCCCTTGCTTT 61.599 55.000 0.00 0.00 0.00 3.51
87 88 0.890683 CCGCTTCATCCCTTGCTTTT 59.109 50.000 0.00 0.00 0.00 2.27
107 108 2.346766 AGATTTGTCTGCACCACACA 57.653 45.000 0.00 0.00 0.00 3.72
108 109 2.867624 AGATTTGTCTGCACCACACAT 58.132 42.857 0.00 0.00 0.00 3.21
109 110 2.816087 AGATTTGTCTGCACCACACATC 59.184 45.455 10.39 10.39 33.05 3.06
110 111 2.346766 TTTGTCTGCACCACACATCT 57.653 45.000 0.00 0.00 0.00 2.90
111 112 2.346766 TTGTCTGCACCACACATCTT 57.653 45.000 0.00 0.00 0.00 2.40
112 113 1.596603 TGTCTGCACCACACATCTTG 58.403 50.000 0.00 0.00 0.00 3.02
113 114 0.239347 GTCTGCACCACACATCTTGC 59.761 55.000 0.00 0.00 35.45 4.01
114 115 0.890542 TCTGCACCACACATCTTGCC 60.891 55.000 0.00 0.00 33.86 4.52
115 116 2.191354 CTGCACCACACATCTTGCCG 62.191 60.000 0.00 0.00 33.86 5.69
116 117 2.562912 CACCACACATCTTGCCGC 59.437 61.111 0.00 0.00 0.00 6.53
117 118 2.112928 ACCACACATCTTGCCGCA 59.887 55.556 0.00 0.00 0.00 5.69
118 119 2.260869 ACCACACATCTTGCCGCAC 61.261 57.895 0.00 0.00 0.00 5.34
119 120 2.260154 CCACACATCTTGCCGCACA 61.260 57.895 0.00 0.00 0.00 4.57
120 121 1.081906 CACACATCTTGCCGCACAC 60.082 57.895 0.00 0.00 0.00 3.82
138 139 0.033796 ACCATCTCCCACATGCCTTG 60.034 55.000 0.00 0.00 0.00 3.61
140 141 1.386533 CATCTCCCACATGCCTTGTC 58.613 55.000 0.00 0.00 36.00 3.18
165 166 3.396260 TCTTTCCCACCAACTACTTCG 57.604 47.619 0.00 0.00 0.00 3.79
167 168 1.053424 TTCCCACCAACTACTTCGCT 58.947 50.000 0.00 0.00 0.00 4.93
186 187 3.440173 CGCTTCTCTCTCAACTCTTCTCT 59.560 47.826 0.00 0.00 0.00 3.10
187 188 4.082787 CGCTTCTCTCTCAACTCTTCTCTT 60.083 45.833 0.00 0.00 0.00 2.85
204 205 2.935201 CTCTTTCTTCTCCATGGCTTCG 59.065 50.000 6.96 0.00 0.00 3.79
212 213 0.839277 TCCATGGCTTCGACATCCAT 59.161 50.000 6.96 6.48 40.98 3.41
247 248 1.865788 CGCAAGGACCATGGTGTTGG 61.866 60.000 25.52 14.52 42.82 3.77
249 250 0.827089 CAAGGACCATGGTGTTGGCA 60.827 55.000 25.52 0.00 40.68 4.92
250 251 0.114954 AAGGACCATGGTGTTGGCAT 59.885 50.000 25.52 1.10 40.68 4.40
309 310 2.369394 GGTATCAGGCTCCACAAAAGG 58.631 52.381 0.00 0.00 0.00 3.11
311 312 0.613012 ATCAGGCTCCACAAAAGGCC 60.613 55.000 0.00 0.00 44.38 5.19
313 314 1.114722 CAGGCTCCACAAAAGGCCAA 61.115 55.000 5.01 0.00 46.23 4.52
314 315 0.178924 AGGCTCCACAAAAGGCCAAT 60.179 50.000 5.01 0.00 46.23 3.16
315 316 0.686789 GGCTCCACAAAAGGCCAATT 59.313 50.000 5.01 0.00 43.59 2.32
316 317 1.608801 GGCTCCACAAAAGGCCAATTG 60.609 52.381 16.47 16.47 43.59 2.32
335 338 2.023223 GCATGGCCGTTGTTTGCAG 61.023 57.895 0.00 0.00 33.58 4.41
365 368 0.536006 GTTGCAAGAGGTGGAGCTGT 60.536 55.000 0.00 0.00 0.00 4.40
370 373 1.209019 CAAGAGGTGGAGCTGTAGCAT 59.791 52.381 6.65 0.00 45.16 3.79
396 399 2.938451 CCTGCTTAATCGTCATTGCTGA 59.062 45.455 0.00 0.00 0.00 4.26
508 511 2.823593 TGATCGCAACATGGCCCG 60.824 61.111 0.00 0.00 0.00 6.13
522 525 2.226330 TGGCCCGTGTTGCAATATATC 58.774 47.619 0.59 0.00 0.00 1.63
558 562 4.022589 GTCCATGATGCAATGGGTGATTAG 60.023 45.833 15.84 0.00 46.17 1.73
576 580 1.557099 AGAGACTCATGCGTTACCCA 58.443 50.000 5.02 0.00 0.00 4.51
577 581 1.899814 AGAGACTCATGCGTTACCCAA 59.100 47.619 5.02 0.00 0.00 4.12
644 650 2.097466 ACAGTCTTTGTTGCAAAGGTCG 59.903 45.455 17.98 10.73 36.31 4.79
661 667 4.959596 GCGGCGGATGGCTCTCTC 62.960 72.222 9.78 0.00 42.94 3.20
662 668 4.637489 CGGCGGATGGCTCTCTCG 62.637 72.222 0.00 0.00 42.94 4.04
663 669 4.959596 GGCGGATGGCTCTCTCGC 62.960 72.222 0.00 0.00 44.80 5.03
667 673 4.560856 GATGGCTCTCTCGCGCGT 62.561 66.667 30.98 6.58 0.00 6.01
668 674 4.560856 ATGGCTCTCTCGCGCGTC 62.561 66.667 30.98 12.32 0.00 5.19
670 676 4.560856 GGCTCTCTCGCGCGTCAT 62.561 66.667 30.98 0.00 0.00 3.06
671 677 3.021788 GCTCTCTCGCGCGTCATC 61.022 66.667 30.98 11.40 0.00 2.92
672 678 2.712539 CTCTCTCGCGCGTCATCT 59.287 61.111 30.98 0.00 0.00 2.90
673 679 1.935194 CTCTCTCGCGCGTCATCTA 59.065 57.895 30.98 8.24 0.00 1.98
674 680 0.305009 CTCTCTCGCGCGTCATCTAA 59.695 55.000 30.98 7.39 0.00 2.10
675 681 0.027716 TCTCTCGCGCGTCATCTAAC 59.972 55.000 30.98 0.00 0.00 2.34
676 682 1.256284 CTCTCGCGCGTCATCTAACG 61.256 60.000 30.98 7.92 45.31 3.18
683 689 2.665777 CGTCATCTAACGCCTGTGG 58.334 57.895 0.00 0.00 35.64 4.17
684 690 1.421410 CGTCATCTAACGCCTGTGGC 61.421 60.000 0.00 0.00 46.75 5.01
693 699 2.045926 GCCTGTGGCGGTCAATCT 60.046 61.111 0.00 0.00 39.62 2.40
694 700 1.220749 GCCTGTGGCGGTCAATCTA 59.779 57.895 0.00 0.00 39.62 1.98
695 701 0.392461 GCCTGTGGCGGTCAATCTAA 60.392 55.000 0.00 0.00 39.62 2.10
696 702 1.747206 GCCTGTGGCGGTCAATCTAAT 60.747 52.381 0.00 0.00 39.62 1.73
697 703 2.643551 CCTGTGGCGGTCAATCTAATT 58.356 47.619 0.00 0.00 0.00 1.40
698 704 2.355756 CCTGTGGCGGTCAATCTAATTG 59.644 50.000 0.00 0.00 41.57 2.32
699 705 3.270027 CTGTGGCGGTCAATCTAATTGA 58.730 45.455 0.00 0.00 46.30 2.57
711 717 7.319142 TCAATCTAATTGATTCATCGCAACA 57.681 32.000 0.00 0.00 43.84 3.33
712 718 7.933396 TCAATCTAATTGATTCATCGCAACAT 58.067 30.769 0.00 0.00 43.84 2.71
713 719 7.858879 TCAATCTAATTGATTCATCGCAACATG 59.141 33.333 0.00 0.00 43.84 3.21
714 720 6.063640 TCTAATTGATTCATCGCAACATGG 57.936 37.500 0.00 0.00 0.00 3.66
715 721 4.987408 AATTGATTCATCGCAACATGGA 57.013 36.364 0.00 0.00 0.00 3.41
716 722 3.763097 TTGATTCATCGCAACATGGAC 57.237 42.857 0.00 0.00 0.00 4.02
717 723 2.016318 TGATTCATCGCAACATGGACC 58.984 47.619 0.00 0.00 0.00 4.46
718 724 2.292267 GATTCATCGCAACATGGACCT 58.708 47.619 0.00 0.00 0.00 3.85
719 725 2.198827 TTCATCGCAACATGGACCTT 57.801 45.000 0.00 0.00 0.00 3.50
720 726 1.452110 TCATCGCAACATGGACCTTG 58.548 50.000 5.84 5.84 0.00 3.61
721 727 1.167851 CATCGCAACATGGACCTTGT 58.832 50.000 7.19 7.19 0.00 3.16
722 728 1.541147 CATCGCAACATGGACCTTGTT 59.459 47.619 17.74 17.74 37.79 2.83
726 732 2.886862 CAACATGGACCTTGTTGCAA 57.113 45.000 29.78 0.00 45.10 4.08
727 733 3.176552 CAACATGGACCTTGTTGCAAA 57.823 42.857 29.78 0.00 45.10 3.68
742 748 1.444895 CAAAGGTTGCGGCTCATGC 60.445 57.895 0.00 0.00 38.76 4.06
767 773 2.024871 GATCGGACGGCTGTCTCG 59.975 66.667 24.48 23.51 44.83 4.04
824 870 9.758021 TTAATATATACTACCCGAGGAACATGA 57.242 33.333 0.00 0.00 0.00 3.07
953 2674 7.214467 ACATTGAACTTTTGTACCCACATAG 57.786 36.000 0.00 0.00 33.76 2.23
974 2695 0.673644 CCCAAGGTCTGTAGCAACCG 60.674 60.000 0.00 0.00 40.63 4.44
1014 2735 4.836825 CTTGAGGCATGGAGAAGAGTAAA 58.163 43.478 0.00 0.00 0.00 2.01
1318 3039 5.441718 AGAAGCTGGAAATATCAAGGTCA 57.558 39.130 0.00 0.00 36.29 4.02
1338 3059 2.034842 CAGTCGCTTAATTAACTCGCGG 60.035 50.000 22.44 9.33 43.57 6.46
1340 3061 2.215812 GTCGCTTAATTAACTCGCGGAG 59.784 50.000 22.44 5.03 43.57 4.63
1377 3098 8.267620 AGACATATGGATCAGTCAAATTCCTA 57.732 34.615 7.80 0.00 33.56 2.94
1383 3104 7.060383 TGGATCAGTCAAATTCCTAGAGATC 57.940 40.000 0.00 0.00 0.00 2.75
1387 3108 5.067936 TCAGTCAAATTCCTAGAGATCGGTC 59.932 44.000 0.00 0.00 0.00 4.79
1417 3138 5.453567 TTTCTGAGATCTTGAGAACACGA 57.546 39.130 14.61 2.15 0.00 4.35
1424 3145 6.931281 TGAGATCTTGAGAACACGAAAAGATT 59.069 34.615 0.00 0.00 37.63 2.40
1450 3171 0.739112 GAAGAAGCCACCTCTCTGCG 60.739 60.000 0.00 0.00 0.00 5.18
1457 3178 0.681564 CCACCTCTCTGCGGTAGTCT 60.682 60.000 0.00 0.00 32.37 3.24
1458 3179 0.453793 CACCTCTCTGCGGTAGTCTG 59.546 60.000 0.00 0.00 32.37 3.51
1459 3180 0.328592 ACCTCTCTGCGGTAGTCTGA 59.671 55.000 0.00 0.00 31.69 3.27
1460 3181 0.736053 CCTCTCTGCGGTAGTCTGAC 59.264 60.000 0.00 0.00 0.00 3.51
1461 3182 0.375454 CTCTCTGCGGTAGTCTGACG 59.625 60.000 1.52 0.00 0.00 4.35
1462 3183 0.321387 TCTCTGCGGTAGTCTGACGT 60.321 55.000 1.52 0.00 0.00 4.34
1463 3184 0.522180 CTCTGCGGTAGTCTGACGTT 59.478 55.000 1.52 0.00 0.00 3.99
1464 3185 0.240145 TCTGCGGTAGTCTGACGTTG 59.760 55.000 1.52 0.00 0.00 4.10
1465 3186 0.732880 CTGCGGTAGTCTGACGTTGG 60.733 60.000 1.52 0.00 0.00 3.77
1466 3187 2.092882 GCGGTAGTCTGACGTTGGC 61.093 63.158 1.52 2.00 0.00 4.52
1467 3188 1.800315 CGGTAGTCTGACGTTGGCG 60.800 63.158 1.52 0.00 44.93 5.69
1468 3189 1.582968 GGTAGTCTGACGTTGGCGA 59.417 57.895 1.52 0.00 42.00 5.54
1469 3190 0.731855 GGTAGTCTGACGTTGGCGAC 60.732 60.000 1.52 0.00 42.00 5.19
1526 3273 6.884472 TTCCCATCTCCTCAGTAACAAATA 57.116 37.500 0.00 0.00 0.00 1.40
1587 3334 8.877808 AAGAAATTTCCTCAACTTTAGCTTTG 57.122 30.769 14.61 0.00 0.00 2.77
1591 3338 4.836125 TCCTCAACTTTAGCTTTGCAAG 57.164 40.909 0.00 0.00 0.00 4.01
1596 3343 4.881273 TCAACTTTAGCTTTGCAAGTCTGA 59.119 37.500 11.39 2.52 0.00 3.27
1622 3369 5.163457 ACTGATTTTTCACATGTTTCCGGTT 60.163 36.000 0.00 0.00 0.00 4.44
1633 3380 1.001633 GTTTCCGGTTCTCAGCAGGTA 59.998 52.381 0.00 0.00 0.00 3.08
1634 3381 1.344065 TTCCGGTTCTCAGCAGGTAA 58.656 50.000 0.00 0.00 0.00 2.85
1752 3510 7.854916 GCAGATCAGCAGTGTAGATTTAAAATC 59.145 37.037 5.05 0.00 0.00 2.17
1759 3517 8.680903 AGCAGTGTAGATTTAAAATCCAATGAG 58.319 33.333 10.25 0.00 0.00 2.90
1761 3519 9.778993 CAGTGTAGATTTAAAATCCAATGAGTG 57.221 33.333 0.00 0.00 0.00 3.51
1762 3520 9.520515 AGTGTAGATTTAAAATCCAATGAGTGT 57.479 29.630 0.00 0.00 0.00 3.55
1763 3521 9.774742 GTGTAGATTTAAAATCCAATGAGTGTC 57.225 33.333 0.00 0.00 0.00 3.67
1766 3525 8.286191 AGATTTAAAATCCAATGAGTGTCTCC 57.714 34.615 0.00 0.00 0.00 3.71
1784 3543 3.118408 TCTCCCACCTTTAATCACCATCG 60.118 47.826 0.00 0.00 0.00 3.84
1792 3551 3.897141 TTAATCACCATCGTGGCTACA 57.103 42.857 0.00 0.00 42.67 2.74
1794 3553 1.195115 ATCACCATCGTGGCTACAGT 58.805 50.000 0.00 0.00 42.67 3.55
1836 3596 2.806244 CGTTGTCAGGTTTGAGGGTTAG 59.194 50.000 0.00 0.00 32.98 2.34
1842 3602 4.455877 GTCAGGTTTGAGGGTTAGTCATTG 59.544 45.833 0.00 0.00 32.98 2.82
1869 3629 8.258708 GGAGACCTTAAAAGTCAGCTATTCTTA 58.741 37.037 7.77 0.00 36.68 2.10
1914 3674 2.430332 GTCAGGACATGAGAGGAAGAGG 59.570 54.545 0.00 0.00 39.07 3.69
1989 3756 5.646467 TTGCTGAAAACGACAGTAACTAC 57.354 39.130 0.00 0.00 35.71 2.73
2030 3797 8.266682 GTGCACTCATACAAACATAATACTACG 58.733 37.037 10.32 0.00 0.00 3.51
2032 3799 9.454585 GCACTCATACAAACATAATACTACGTA 57.545 33.333 0.00 0.00 0.00 3.57
2058 3825 9.270640 AGTACTACTTGTATTATACTCTGTCCG 57.729 37.037 0.00 0.00 33.23 4.79
2059 3826 9.050601 GTACTACTTGTATTATACTCTGTCCGT 57.949 37.037 3.92 4.47 33.23 4.69
2060 3827 8.152309 ACTACTTGTATTATACTCTGTCCGTC 57.848 38.462 3.92 0.00 0.00 4.79
2061 3828 6.388435 ACTTGTATTATACTCTGTCCGTCC 57.612 41.667 3.92 0.00 0.00 4.79
2062 3829 5.301298 ACTTGTATTATACTCTGTCCGTCCC 59.699 44.000 3.92 0.00 0.00 4.46
2063 3830 4.795469 TGTATTATACTCTGTCCGTCCCA 58.205 43.478 3.92 0.00 0.00 4.37
2064 3831 5.391256 TGTATTATACTCTGTCCGTCCCAT 58.609 41.667 3.92 0.00 0.00 4.00
2065 3832 6.545567 TGTATTATACTCTGTCCGTCCCATA 58.454 40.000 3.92 0.00 0.00 2.74
2066 3833 7.005902 TGTATTATACTCTGTCCGTCCCATAA 58.994 38.462 3.92 0.00 0.00 1.90
2067 3834 7.672660 TGTATTATACTCTGTCCGTCCCATAAT 59.327 37.037 3.92 0.00 0.00 1.28
2068 3835 4.873746 ATACTCTGTCCGTCCCATAATG 57.126 45.455 0.00 0.00 0.00 1.90
2069 3836 2.467880 ACTCTGTCCGTCCCATAATGT 58.532 47.619 0.00 0.00 0.00 2.71
2070 3837 3.638860 ACTCTGTCCGTCCCATAATGTA 58.361 45.455 0.00 0.00 0.00 2.29
2071 3838 3.637229 ACTCTGTCCGTCCCATAATGTAG 59.363 47.826 0.00 0.00 0.00 2.74
2072 3839 2.963101 TCTGTCCGTCCCATAATGTAGG 59.037 50.000 0.00 0.00 0.00 3.18
2073 3840 2.963101 CTGTCCGTCCCATAATGTAGGA 59.037 50.000 0.00 0.00 0.00 2.94
2074 3841 3.376636 TGTCCGTCCCATAATGTAGGAA 58.623 45.455 0.00 0.00 0.00 3.36
2075 3842 3.386726 TGTCCGTCCCATAATGTAGGAAG 59.613 47.826 0.00 0.00 0.00 3.46
2076 3843 3.387050 GTCCGTCCCATAATGTAGGAAGT 59.613 47.826 0.00 0.00 0.00 3.01
2077 3844 4.035112 TCCGTCCCATAATGTAGGAAGTT 58.965 43.478 0.00 0.00 0.00 2.66
2078 3845 4.472108 TCCGTCCCATAATGTAGGAAGTTT 59.528 41.667 0.00 0.00 0.00 2.66
2079 3846 5.045432 TCCGTCCCATAATGTAGGAAGTTTT 60.045 40.000 0.00 0.00 0.00 2.43
2080 3847 5.650703 CCGTCCCATAATGTAGGAAGTTTTT 59.349 40.000 0.00 0.00 0.00 1.94
2130 3897 7.486802 AAACGTCTTAAATATTATGGGACGG 57.513 36.000 23.56 13.57 45.79 4.79
2131 3898 6.409524 ACGTCTTAAATATTATGGGACGGA 57.590 37.500 23.56 2.84 45.79 4.69
2132 3899 6.453092 ACGTCTTAAATATTATGGGACGGAG 58.547 40.000 23.56 8.77 45.79 4.63
2133 3900 6.266103 ACGTCTTAAATATTATGGGACGGAGA 59.734 38.462 23.56 4.84 45.79 3.71
2134 3901 6.807230 CGTCTTAAATATTATGGGACGGAGAG 59.193 42.308 17.50 0.00 40.50 3.20
2135 3902 7.309012 CGTCTTAAATATTATGGGACGGAGAGA 60.309 40.741 17.50 0.00 40.50 3.10
2136 3903 8.030106 GTCTTAAATATTATGGGACGGAGAGAG 58.970 40.741 0.00 0.00 0.00 3.20
2137 3904 7.728981 TCTTAAATATTATGGGACGGAGAGAGT 59.271 37.037 0.00 0.00 0.00 3.24
2138 3905 8.945195 TTAAATATTATGGGACGGAGAGAGTA 57.055 34.615 0.00 0.00 0.00 2.59
2139 3906 9.543231 TTAAATATTATGGGACGGAGAGAGTAT 57.457 33.333 0.00 0.00 0.00 2.12
2140 3907 8.437274 AAATATTATGGGACGGAGAGAGTATT 57.563 34.615 0.00 0.00 0.00 1.89
2141 3908 8.437274 AATATTATGGGACGGAGAGAGTATTT 57.563 34.615 0.00 0.00 0.00 1.40
2142 3909 5.531122 TTATGGGACGGAGAGAGTATTTG 57.469 43.478 0.00 0.00 0.00 2.32
2143 3910 2.816411 TGGGACGGAGAGAGTATTTGT 58.184 47.619 0.00 0.00 0.00 2.83
2144 3911 2.758979 TGGGACGGAGAGAGTATTTGTC 59.241 50.000 0.00 0.00 0.00 3.18
2145 3912 3.025262 GGGACGGAGAGAGTATTTGTCT 58.975 50.000 0.00 0.00 30.86 3.41
2146 3913 4.205587 GGGACGGAGAGAGTATTTGTCTA 58.794 47.826 0.00 0.00 27.75 2.59
2147 3914 4.643784 GGGACGGAGAGAGTATTTGTCTAA 59.356 45.833 0.00 0.00 27.75 2.10
2148 3915 5.126707 GGGACGGAGAGAGTATTTGTCTAAA 59.873 44.000 0.00 0.00 27.75 1.85
2149 3916 6.183360 GGGACGGAGAGAGTATTTGTCTAAAT 60.183 42.308 0.00 0.00 39.69 1.40
2150 3917 7.014038 GGGACGGAGAGAGTATTTGTCTAAATA 59.986 40.741 0.00 0.00 37.64 1.40
2151 3918 8.578151 GGACGGAGAGAGTATTTGTCTAAATAT 58.422 37.037 0.00 0.00 40.01 1.28
2152 3919 9.400638 GACGGAGAGAGTATTTGTCTAAATATG 57.599 37.037 0.00 0.00 40.01 1.78
2153 3920 8.361139 ACGGAGAGAGTATTTGTCTAAATATGG 58.639 37.037 0.00 0.00 40.01 2.74
2154 3921 8.577296 CGGAGAGAGTATTTGTCTAAATATGGA 58.423 37.037 0.00 0.00 40.01 3.41
2155 3922 9.699703 GGAGAGAGTATTTGTCTAAATATGGAC 57.300 37.037 0.00 0.00 40.01 4.02
2156 3923 9.400638 GAGAGAGTATTTGTCTAAATATGGACG 57.599 37.037 0.00 0.00 40.01 4.79
2157 3924 8.915036 AGAGAGTATTTGTCTAAATATGGACGT 58.085 33.333 0.00 0.00 40.01 4.34
2165 3932 9.701098 TTTGTCTAAATATGGACGTATATGGAC 57.299 33.333 0.00 1.08 39.73 4.02
2166 3933 8.411991 TGTCTAAATATGGACGTATATGGACA 57.588 34.615 12.71 12.71 39.73 4.02
2167 3934 9.031537 TGTCTAAATATGGACGTATATGGACAT 57.968 33.333 12.71 8.21 39.73 3.06
2168 3935 9.302345 GTCTAAATATGGACGTATATGGACATG 57.698 37.037 11.65 0.00 0.00 3.21
2178 3945 7.042925 GGACGTATATGGACATGTTTTAGTGTC 60.043 40.741 0.00 2.47 43.02 3.67
2180 3947 7.820386 ACGTATATGGACATGTTTTAGTGTCAA 59.180 33.333 0.00 0.00 44.99 3.18
2185 3952 7.809546 TGGACATGTTTTAGTGTCAAATACA 57.190 32.000 0.00 0.00 44.99 2.29
2187 3954 8.855110 TGGACATGTTTTAGTGTCAAATACATT 58.145 29.630 0.00 0.00 44.99 2.71
2189 3956 8.948853 ACATGTTTTAGTGTCAAATACATTCG 57.051 30.769 0.00 0.00 41.10 3.34
2228 3995 3.521937 AGACAAATAATTGGGGACGGAGA 59.478 43.478 0.00 0.00 41.01 3.71
2337 4104 4.002982 CAGGAAGGATCACATTTGACGAA 58.997 43.478 0.00 0.00 33.38 3.85
2407 4174 3.831715 ATGTTTCCGCTAACTGCTTTC 57.168 42.857 0.00 0.00 40.11 2.62
2427 4194 6.517362 GCTTTCCTGCTTTCTTTGTTCCTAAT 60.517 38.462 0.00 0.00 0.00 1.73
2472 4239 1.953686 CCGCCCAAAGAGAAAGTTCAA 59.046 47.619 0.00 0.00 0.00 2.69
2536 4303 8.537049 ACATTTGTGTTCAAACCATAATGATG 57.463 30.769 13.30 0.00 44.69 3.07
2576 4399 8.691797 TCTGACAGTATATAGTTGTATTGTGCA 58.308 33.333 1.59 0.00 0.00 4.57
2674 4497 5.306114 ACAAGACAATATACCTAAGGCCC 57.694 43.478 0.00 0.00 0.00 5.80
2697 4520 5.048013 CCCCAGAAAACATCCTTAGTCAAAC 60.048 44.000 0.00 0.00 0.00 2.93
2810 4633 5.692654 GGTAAGAGAGAATCGTCTATTTGGC 59.307 44.000 0.00 0.00 42.67 4.52
3034 4858 9.535878 AAAATCATCGTAGGAGAAAGTTATCTC 57.464 33.333 6.55 6.55 44.18 2.75
3105 4929 6.833041 TCTTTTACCACCTAAGAACACATGA 58.167 36.000 0.00 0.00 0.00 3.07
3160 4984 7.531871 CAGTCACACGATTTCTTGTTATTTCAG 59.468 37.037 0.00 0.00 0.00 3.02
3862 5697 3.941483 ACATTTTCTATGAGGGTTGCTCG 59.059 43.478 0.00 0.00 0.00 5.03
4027 5862 3.621214 GCACACCACATATGTTACTCCCA 60.621 47.826 5.37 0.00 0.00 4.37
4049 5884 6.053005 CCACCACACCTAAATATATGACGTT 58.947 40.000 0.00 0.00 0.00 3.99
4050 5885 6.202188 CCACCACACCTAAATATATGACGTTC 59.798 42.308 0.00 0.00 0.00 3.95
4053 5888 8.698210 ACCACACCTAAATATATGACGTTCTTA 58.302 33.333 0.00 0.00 0.00 2.10
4055 5890 9.745880 CACACCTAAATATATGACGTTCTTAGT 57.254 33.333 0.00 0.00 0.00 2.24
4064 5899 4.685169 TGACGTTCTTAGTACCCTAACG 57.315 45.455 14.87 14.87 46.11 3.18
4076 5911 1.420891 ACCCTAACGTTTTGGTAGGCA 59.579 47.619 17.03 0.00 0.00 4.75
4218 7782 7.989416 AGTGGTTTTATATTCGTGAGGAAAA 57.011 32.000 0.00 0.00 38.36 2.29
4319 7894 3.627123 GCAGCACACCACATATATGTCAA 59.373 43.478 15.60 0.00 39.39 3.18
4323 7898 6.748658 CAGCACACCACATATATGTCAAAAAG 59.251 38.462 15.60 3.73 39.39 2.27
4390 7968 9.216117 ACCTTAATATGTGTTGTACTTGTCTTC 57.784 33.333 0.00 0.00 0.00 2.87
4396 7974 3.621268 GTGTTGTACTTGTCTTCTGCACA 59.379 43.478 0.00 0.00 0.00 4.57
4444 8022 7.173390 GCTACAACCCACTATATGATTTTCCTC 59.827 40.741 0.00 0.00 0.00 3.71
4476 9209 2.497173 GCCACCACCACATGCAACA 61.497 57.895 0.00 0.00 0.00 3.33
4685 9420 2.813754 GCAACTGATTCCTACAGCAACA 59.186 45.455 0.00 0.00 38.74 3.33
4687 9422 3.769739 ACTGATTCCTACAGCAACACA 57.230 42.857 0.00 0.00 38.74 3.72
4710 9445 3.940221 CGAGGTATTATCTACTCCCTCCG 59.060 52.174 0.00 0.00 36.04 4.63
4711 9446 4.565236 CGAGGTATTATCTACTCCCTCCGT 60.565 50.000 0.00 0.00 36.04 4.69
4728 9463 5.306160 CCCTCCGTTCCTAAATATAAGTCCA 59.694 44.000 0.00 0.00 0.00 4.02
4805 9540 7.398024 AGAGTATAGGTTCACTCATTTTGCTT 58.602 34.615 4.70 0.00 42.99 3.91
4807 9542 7.168219 AGTATAGGTTCACTCATTTTGCTTCA 58.832 34.615 0.00 0.00 0.00 3.02
4861 9598 9.597170 GACTTATATTTAGAAACGGAGGAAGTT 57.403 33.333 0.00 0.00 0.00 2.66
4873 9610 6.847421 ACGGAGGAAGTTGTTTATACTAGT 57.153 37.500 0.00 0.00 0.00 2.57
4874 9611 7.237209 ACGGAGGAAGTTGTTTATACTAGTT 57.763 36.000 0.00 0.00 0.00 2.24
4875 9612 8.353423 ACGGAGGAAGTTGTTTATACTAGTTA 57.647 34.615 0.00 0.00 0.00 2.24
4876 9613 8.975295 ACGGAGGAAGTTGTTTATACTAGTTAT 58.025 33.333 0.00 0.00 0.00 1.89
4877 9614 9.813446 CGGAGGAAGTTGTTTATACTAGTTATT 57.187 33.333 0.00 0.00 0.00 1.40
4959 9696 6.072649 AGAATAAAAGGAAAAGAAACGGGGA 58.927 36.000 0.00 0.00 0.00 4.81
4960 9697 6.551975 AGAATAAAAGGAAAAGAAACGGGGAA 59.448 34.615 0.00 0.00 0.00 3.97
4961 9698 6.734502 ATAAAAGGAAAAGAAACGGGGAAA 57.265 33.333 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.131596 GGTAACAAAGGCAGTCTACACAA 58.868 43.478 0.00 0.00 0.00 3.33
33 34 4.595781 ACATAGACAAGTCCCAGGTAACAA 59.404 41.667 0.00 0.00 41.41 2.83
34 35 4.020573 CACATAGACAAGTCCCAGGTAACA 60.021 45.833 0.00 0.00 41.41 2.41
35 36 4.504858 CACATAGACAAGTCCCAGGTAAC 58.495 47.826 0.00 0.00 0.00 2.50
38 39 1.909302 CCACATAGACAAGTCCCAGGT 59.091 52.381 0.00 0.00 0.00 4.00
43 44 3.258372 TGTCAGACCACATAGACAAGTCC 59.742 47.826 0.00 0.00 37.99 3.85
50 51 1.136891 CGGCATGTCAGACCACATAGA 59.863 52.381 0.00 0.00 35.10 1.98
86 87 3.814625 TGTGTGGTGCAGACAAATCTAA 58.185 40.909 0.03 0.00 34.76 2.10
87 88 3.483808 TGTGTGGTGCAGACAAATCTA 57.516 42.857 0.03 0.00 34.76 1.98
107 108 0.745845 GAGATGGTGTGCGGCAAGAT 60.746 55.000 3.23 0.00 0.00 2.40
108 109 1.375908 GAGATGGTGTGCGGCAAGA 60.376 57.895 3.23 0.00 0.00 3.02
109 110 2.401766 GGAGATGGTGTGCGGCAAG 61.402 63.158 3.23 0.00 0.00 4.01
110 111 2.359850 GGAGATGGTGTGCGGCAA 60.360 61.111 3.23 0.00 0.00 4.52
111 112 4.408821 GGGAGATGGTGTGCGGCA 62.409 66.667 0.00 0.00 0.00 5.69
112 113 4.408821 TGGGAGATGGTGTGCGGC 62.409 66.667 0.00 0.00 0.00 6.53
113 114 2.436646 GTGGGAGATGGTGTGCGG 60.437 66.667 0.00 0.00 0.00 5.69
114 115 1.078214 ATGTGGGAGATGGTGTGCG 60.078 57.895 0.00 0.00 0.00 5.34
115 116 1.660560 GCATGTGGGAGATGGTGTGC 61.661 60.000 0.00 0.00 0.00 4.57
116 117 1.033746 GGCATGTGGGAGATGGTGTG 61.034 60.000 0.00 0.00 0.00 3.82
117 118 1.210204 AGGCATGTGGGAGATGGTGT 61.210 55.000 0.00 0.00 0.00 4.16
118 119 0.033796 AAGGCATGTGGGAGATGGTG 60.034 55.000 0.00 0.00 0.00 4.17
119 120 0.033796 CAAGGCATGTGGGAGATGGT 60.034 55.000 0.00 0.00 0.00 3.55
120 121 0.033796 ACAAGGCATGTGGGAGATGG 60.034 55.000 0.00 0.00 41.93 3.51
138 139 3.296854 AGTTGGTGGGAAAGAAAAGGAC 58.703 45.455 0.00 0.00 0.00 3.85
140 141 4.470602 AGTAGTTGGTGGGAAAGAAAAGG 58.529 43.478 0.00 0.00 0.00 3.11
165 166 5.391312 AAGAGAAGAGTTGAGAGAGAAGC 57.609 43.478 0.00 0.00 0.00 3.86
167 168 7.505585 AGAAGAAAGAGAAGAGTTGAGAGAGAA 59.494 37.037 0.00 0.00 0.00 2.87
186 187 2.038426 TGTCGAAGCCATGGAGAAGAAA 59.962 45.455 18.40 0.89 0.00 2.52
187 188 1.623311 TGTCGAAGCCATGGAGAAGAA 59.377 47.619 18.40 0.00 0.00 2.52
204 205 2.480759 GCCACAAGCATTCATGGATGTC 60.481 50.000 15.55 7.91 42.97 3.06
316 317 2.738139 GCAAACAACGGCCATGCC 60.738 61.111 2.24 0.00 46.75 4.40
335 338 2.592194 CTCTTGCAACATGACACATGC 58.408 47.619 0.00 2.58 39.22 4.06
381 384 4.200838 TCACCTTCAGCAATGACGATTA 57.799 40.909 0.00 0.00 0.00 1.75
396 399 1.453155 GACCATGTTGCGATCACCTT 58.547 50.000 0.00 0.00 0.00 3.50
508 511 4.386230 GTGCGATCGATATATTGCAACAC 58.614 43.478 21.57 8.75 45.57 3.32
522 525 1.227645 ATGGACCATGGTGCGATCG 60.228 57.895 28.64 11.69 39.39 3.69
558 562 2.380084 TTGGGTAACGCATGAGTCTC 57.620 50.000 1.45 0.00 37.60 3.36
576 580 0.316937 CTTGTTGCACGCGTGTCATT 60.317 50.000 36.80 0.00 0.00 2.57
577 581 1.279539 CTTGTTGCACGCGTGTCAT 59.720 52.632 36.80 0.00 0.00 3.06
644 650 4.959596 GAGAGAGCCATCCGCCGC 62.960 72.222 0.00 0.00 38.78 6.53
655 661 0.305009 TTAGATGACGCGCGAGAGAG 59.695 55.000 39.36 6.47 33.96 3.20
656 662 0.027716 GTTAGATGACGCGCGAGAGA 59.972 55.000 39.36 16.90 33.96 3.10
657 663 1.256284 CGTTAGATGACGCGCGAGAG 61.256 60.000 39.36 7.85 36.12 3.20
658 664 1.297378 CGTTAGATGACGCGCGAGA 60.297 57.895 39.36 22.48 36.12 4.04
659 665 3.203246 CGTTAGATGACGCGCGAG 58.797 61.111 39.36 10.29 36.12 5.03
665 671 1.421410 GCCACAGGCGTTAGATGACG 61.421 60.000 0.00 0.00 45.40 4.35
666 672 2.384203 GCCACAGGCGTTAGATGAC 58.616 57.895 0.00 0.00 39.62 3.06
667 673 4.932789 GCCACAGGCGTTAGATGA 57.067 55.556 0.00 0.00 39.62 2.92
676 682 0.392461 TTAGATTGACCGCCACAGGC 60.392 55.000 0.00 0.00 46.75 4.85
677 683 2.332063 ATTAGATTGACCGCCACAGG 57.668 50.000 0.00 0.00 37.30 4.00
678 684 3.270027 TCAATTAGATTGACCGCCACAG 58.730 45.455 0.00 0.00 43.84 3.66
679 685 3.342377 TCAATTAGATTGACCGCCACA 57.658 42.857 0.00 0.00 43.84 4.17
688 694 7.114388 CCATGTTGCGATGAATCAATTAGATTG 59.886 37.037 7.55 0.00 46.76 2.67
690 696 6.487668 TCCATGTTGCGATGAATCAATTAGAT 59.512 34.615 0.00 0.00 39.09 1.98
691 697 5.821995 TCCATGTTGCGATGAATCAATTAGA 59.178 36.000 0.00 0.00 0.00 2.10
692 698 5.911280 GTCCATGTTGCGATGAATCAATTAG 59.089 40.000 0.00 0.00 0.00 1.73
693 699 5.221028 GGTCCATGTTGCGATGAATCAATTA 60.221 40.000 0.00 0.00 0.00 1.40
694 700 4.440525 GGTCCATGTTGCGATGAATCAATT 60.441 41.667 0.00 0.00 0.00 2.32
695 701 3.067180 GGTCCATGTTGCGATGAATCAAT 59.933 43.478 0.00 0.00 0.00 2.57
696 702 2.423185 GGTCCATGTTGCGATGAATCAA 59.577 45.455 0.00 0.00 0.00 2.57
697 703 2.016318 GGTCCATGTTGCGATGAATCA 58.984 47.619 0.00 0.00 0.00 2.57
698 704 2.292267 AGGTCCATGTTGCGATGAATC 58.708 47.619 0.00 0.00 0.00 2.52
699 705 2.424601 CAAGGTCCATGTTGCGATGAAT 59.575 45.455 0.00 0.00 0.00 2.57
700 706 1.811965 CAAGGTCCATGTTGCGATGAA 59.188 47.619 0.00 0.00 0.00 2.57
701 707 1.271325 ACAAGGTCCATGTTGCGATGA 60.271 47.619 0.00 0.00 0.00 2.92
702 708 1.167851 ACAAGGTCCATGTTGCGATG 58.832 50.000 0.00 0.00 0.00 3.84
703 709 1.909700 AACAAGGTCCATGTTGCGAT 58.090 45.000 11.63 0.00 39.43 4.58
704 710 3.412722 AACAAGGTCCATGTTGCGA 57.587 47.368 11.63 0.00 39.43 5.10
708 714 2.102925 CCTTTGCAACAAGGTCCATGTT 59.897 45.455 6.66 6.66 41.50 2.71
709 715 1.688197 CCTTTGCAACAAGGTCCATGT 59.312 47.619 8.77 0.00 0.00 3.21
710 716 1.688197 ACCTTTGCAACAAGGTCCATG 59.312 47.619 15.74 0.00 45.80 3.66
711 717 2.086610 ACCTTTGCAACAAGGTCCAT 57.913 45.000 15.74 0.00 45.80 3.41
712 718 3.605946 ACCTTTGCAACAAGGTCCA 57.394 47.368 15.74 0.00 45.80 4.02
724 730 1.444895 GCATGAGCCGCAACCTTTG 60.445 57.895 0.00 0.00 33.58 2.77
725 731 2.964978 GCATGAGCCGCAACCTTT 59.035 55.556 0.00 0.00 33.58 3.11
726 732 3.434319 CGCATGAGCCGCAACCTT 61.434 61.111 0.00 0.00 37.52 3.50
738 744 3.333189 CCGATCACTCGCCGCATG 61.333 66.667 0.00 0.00 43.66 4.06
740 746 4.492160 GTCCGATCACTCGCCGCA 62.492 66.667 0.00 0.00 43.66 5.69
742 748 4.907034 CCGTCCGATCACTCGCCG 62.907 72.222 0.00 0.00 43.66 6.46
749 755 2.761195 CGAGACAGCCGTCCGATCA 61.761 63.158 0.00 0.00 43.73 2.92
953 2674 0.960861 GTTGCTACAGACCTTGGGGC 60.961 60.000 0.00 0.00 35.63 5.80
1014 2735 2.092646 TGTGCCACCAACTACAAGAACT 60.093 45.455 0.00 0.00 0.00 3.01
1086 2807 1.071699 GGCCGCATCAGGATAAAGGTA 59.928 52.381 0.00 0.00 0.00 3.08
1254 2975 0.172803 GCTGCAGCAGGAATTGAAGG 59.827 55.000 33.36 0.00 41.59 3.46
1256 2977 1.171308 GAGCTGCAGCAGGAATTGAA 58.829 50.000 38.24 0.00 45.16 2.69
1260 2981 1.313812 GCTTGAGCTGCAGCAGGAAT 61.314 55.000 38.24 19.47 45.16 3.01
1383 3104 1.476891 TCTCAGAAAAGGGATCGACCG 59.523 52.381 0.00 0.00 40.11 4.79
1387 3108 5.016051 TCAAGATCTCAGAAAAGGGATCG 57.984 43.478 0.00 0.00 39.39 3.69
1417 3138 3.829026 GGCTTCTTCCCAGTCAATCTTTT 59.171 43.478 0.00 0.00 0.00 2.27
1424 3145 0.768221 AGGTGGCTTCTTCCCAGTCA 60.768 55.000 0.00 0.00 31.89 3.41
1450 3171 0.731855 GTCGCCAACGTCAGACTACC 60.732 60.000 0.00 0.00 41.18 3.18
1467 3188 4.681978 AGAGGTGGCGCCGTTGTC 62.682 66.667 23.90 15.51 43.70 3.18
1468 3189 4.988598 CAGAGGTGGCGCCGTTGT 62.989 66.667 23.90 5.95 43.70 3.32
1469 3190 2.852495 ATACAGAGGTGGCGCCGTTG 62.852 60.000 23.90 16.82 43.70 4.10
1526 3273 2.736670 AAAGACAGTTGCTTCAGGGT 57.263 45.000 0.00 0.00 0.00 4.34
1559 3306 6.777580 AGCTAAAGTTGAGGAAATTTCTTCCA 59.222 34.615 23.11 12.77 41.00 3.53
1570 3317 4.836125 CTTGCAAAGCTAAAGTTGAGGA 57.164 40.909 0.00 0.00 36.98 3.71
1587 3334 4.972440 GTGAAAAATCAGTGTCAGACTTGC 59.028 41.667 1.31 0.00 29.75 4.01
1591 3338 6.064846 ACATGTGAAAAATCAGTGTCAGAC 57.935 37.500 0.00 0.00 0.00 3.51
1596 3343 5.280945 CGGAAACATGTGAAAAATCAGTGT 58.719 37.500 0.00 0.00 0.00 3.55
1622 3369 7.042335 GCTTATTTAGTCTTTACCTGCTGAGA 58.958 38.462 0.00 0.00 0.00 3.27
1633 3380 2.683362 GCAGGCGGCTTATTTAGTCTTT 59.317 45.455 9.66 0.00 40.25 2.52
1634 3381 2.289565 GCAGGCGGCTTATTTAGTCTT 58.710 47.619 9.66 0.00 40.25 3.01
1709 3467 8.928733 GCTGATCTGCATTGAAATTCTTTAAAA 58.071 29.630 18.67 0.00 0.00 1.52
1710 3468 8.089597 TGCTGATCTGCATTGAAATTCTTTAAA 58.910 29.630 21.87 0.00 38.12 1.52
1723 3481 3.900966 TCTACACTGCTGATCTGCATT 57.099 42.857 25.15 18.06 42.48 3.56
1727 3485 8.341173 GGATTTTAAATCTACACTGCTGATCTG 58.659 37.037 16.02 0.00 0.00 2.90
1761 3519 3.713826 TGGTGATTAAAGGTGGGAGAC 57.286 47.619 0.00 0.00 0.00 3.36
1762 3520 3.118408 CGATGGTGATTAAAGGTGGGAGA 60.118 47.826 0.00 0.00 0.00 3.71
1763 3521 3.206150 CGATGGTGATTAAAGGTGGGAG 58.794 50.000 0.00 0.00 0.00 4.30
1784 3543 0.036671 GGTACACCCACTGTAGCCAC 60.037 60.000 0.00 0.00 44.82 5.01
1836 3596 5.313712 TGACTTTTAAGGTCTCCCAATGAC 58.686 41.667 8.60 0.00 35.04 3.06
1842 3602 3.704800 AGCTGACTTTTAAGGTCTCCC 57.295 47.619 8.60 0.00 35.04 4.30
1869 3629 8.593945 ACACCAAATTCAGGTATACAATTCAT 57.406 30.769 5.01 0.00 37.23 2.57
1914 3674 7.988028 ACTTATAGTCCTAGCATTTCACTTTCC 59.012 37.037 0.00 0.00 0.00 3.13
1952 3719 8.755018 CGTTTTCAGCAACTTCAGAAAATAAAT 58.245 29.630 0.00 0.00 40.68 1.40
1956 3723 5.743872 GTCGTTTTCAGCAACTTCAGAAAAT 59.256 36.000 0.00 0.00 40.68 1.82
1989 3756 3.716006 CACCTGCACGGCACTTCG 61.716 66.667 2.50 0.00 33.79 3.79
2032 3799 9.270640 CGGACAGAGTATAATACAAGTAGTACT 57.729 37.037 0.00 0.00 35.05 2.73
2033 3800 9.050601 ACGGACAGAGTATAATACAAGTAGTAC 57.949 37.037 0.00 0.00 35.05 2.73
2034 3801 9.265901 GACGGACAGAGTATAATACAAGTAGTA 57.734 37.037 0.00 0.00 37.06 1.82
2035 3802 7.228308 GGACGGACAGAGTATAATACAAGTAGT 59.772 40.741 0.00 0.00 0.00 2.73
2036 3803 7.308469 GGGACGGACAGAGTATAATACAAGTAG 60.308 44.444 0.00 0.00 0.00 2.57
2037 3804 6.488006 GGGACGGACAGAGTATAATACAAGTA 59.512 42.308 0.00 0.00 0.00 2.24
2038 3805 5.301298 GGGACGGACAGAGTATAATACAAGT 59.699 44.000 0.00 0.00 0.00 3.16
2039 3806 5.301045 TGGGACGGACAGAGTATAATACAAG 59.699 44.000 0.00 0.00 0.00 3.16
2042 3809 5.979288 ATGGGACGGACAGAGTATAATAC 57.021 43.478 0.00 0.00 0.00 1.89
2043 3810 7.672660 ACATTATGGGACGGACAGAGTATAATA 59.327 37.037 0.00 0.00 0.00 0.98
2044 3811 6.497259 ACATTATGGGACGGACAGAGTATAAT 59.503 38.462 0.00 0.00 0.00 1.28
2045 3812 5.836898 ACATTATGGGACGGACAGAGTATAA 59.163 40.000 0.00 0.00 0.00 0.98
2046 3813 5.391256 ACATTATGGGACGGACAGAGTATA 58.609 41.667 0.00 0.00 0.00 1.47
2047 3814 4.223953 ACATTATGGGACGGACAGAGTAT 58.776 43.478 0.00 0.00 0.00 2.12
2048 3815 3.638860 ACATTATGGGACGGACAGAGTA 58.361 45.455 0.00 0.00 0.00 2.59
2050 3817 3.005897 CCTACATTATGGGACGGACAGAG 59.994 52.174 0.00 0.00 0.00 3.35
2052 3819 2.963101 TCCTACATTATGGGACGGACAG 59.037 50.000 0.00 0.00 31.72 3.51
2054 3821 3.387050 ACTTCCTACATTATGGGACGGAC 59.613 47.826 0.00 0.00 37.78 4.79
2055 3822 3.649843 ACTTCCTACATTATGGGACGGA 58.350 45.455 0.00 0.00 37.78 4.69
2056 3823 4.417426 AACTTCCTACATTATGGGACGG 57.583 45.455 0.00 0.00 37.78 4.79
2104 3871 8.400186 CCGTCCCATAATATTTAAGACGTTTTT 58.600 33.333 19.54 0.00 42.90 1.94
2105 3872 7.769970 TCCGTCCCATAATATTTAAGACGTTTT 59.230 33.333 19.54 0.00 42.90 2.43
2106 3873 7.274447 TCCGTCCCATAATATTTAAGACGTTT 58.726 34.615 19.54 0.00 42.90 3.60
2107 3874 6.819284 TCCGTCCCATAATATTTAAGACGTT 58.181 36.000 19.54 0.00 42.90 3.99
2108 3875 6.266103 TCTCCGTCCCATAATATTTAAGACGT 59.734 38.462 19.54 0.00 42.90 4.34
2109 3876 6.684686 TCTCCGTCCCATAATATTTAAGACG 58.315 40.000 16.62 16.62 43.76 4.18
2110 3877 7.893658 TCTCTCCGTCCCATAATATTTAAGAC 58.106 38.462 0.00 0.00 0.00 3.01
2111 3878 7.728981 ACTCTCTCCGTCCCATAATATTTAAGA 59.271 37.037 0.00 0.00 0.00 2.10
2112 3879 7.897864 ACTCTCTCCGTCCCATAATATTTAAG 58.102 38.462 0.00 0.00 0.00 1.85
2113 3880 7.850935 ACTCTCTCCGTCCCATAATATTTAA 57.149 36.000 0.00 0.00 0.00 1.52
2114 3881 9.543231 AATACTCTCTCCGTCCCATAATATTTA 57.457 33.333 0.00 0.00 0.00 1.40
2115 3882 8.437274 AATACTCTCTCCGTCCCATAATATTT 57.563 34.615 0.00 0.00 0.00 1.40
2116 3883 8.314751 CAAATACTCTCTCCGTCCCATAATATT 58.685 37.037 0.00 0.00 0.00 1.28
2117 3884 7.455008 ACAAATACTCTCTCCGTCCCATAATAT 59.545 37.037 0.00 0.00 0.00 1.28
2118 3885 6.781014 ACAAATACTCTCTCCGTCCCATAATA 59.219 38.462 0.00 0.00 0.00 0.98
2119 3886 5.602978 ACAAATACTCTCTCCGTCCCATAAT 59.397 40.000 0.00 0.00 0.00 1.28
2120 3887 4.960469 ACAAATACTCTCTCCGTCCCATAA 59.040 41.667 0.00 0.00 0.00 1.90
2121 3888 4.543689 ACAAATACTCTCTCCGTCCCATA 58.456 43.478 0.00 0.00 0.00 2.74
2122 3889 3.375699 ACAAATACTCTCTCCGTCCCAT 58.624 45.455 0.00 0.00 0.00 4.00
2123 3890 2.758979 GACAAATACTCTCTCCGTCCCA 59.241 50.000 0.00 0.00 0.00 4.37
2124 3891 3.025262 AGACAAATACTCTCTCCGTCCC 58.975 50.000 0.00 0.00 0.00 4.46
2125 3892 5.831702 TTAGACAAATACTCTCTCCGTCC 57.168 43.478 0.00 0.00 0.00 4.79
2126 3893 9.400638 CATATTTAGACAAATACTCTCTCCGTC 57.599 37.037 0.00 0.00 38.98 4.79
2127 3894 8.361139 CCATATTTAGACAAATACTCTCTCCGT 58.639 37.037 0.00 0.00 38.98 4.69
2128 3895 8.577296 TCCATATTTAGACAAATACTCTCTCCG 58.423 37.037 0.00 0.00 38.98 4.63
2129 3896 9.699703 GTCCATATTTAGACAAATACTCTCTCC 57.300 37.037 0.00 0.00 38.98 3.71
2130 3897 9.400638 CGTCCATATTTAGACAAATACTCTCTC 57.599 37.037 0.00 0.00 38.98 3.20
2131 3898 8.915036 ACGTCCATATTTAGACAAATACTCTCT 58.085 33.333 0.00 0.00 38.98 3.10
2139 3906 9.701098 GTCCATATACGTCCATATTTAGACAAA 57.299 33.333 0.00 0.00 33.08 2.83
2140 3907 8.862085 TGTCCATATACGTCCATATTTAGACAA 58.138 33.333 0.00 0.00 33.08 3.18
2141 3908 8.411991 TGTCCATATACGTCCATATTTAGACA 57.588 34.615 0.00 1.86 33.08 3.41
2142 3909 9.302345 CATGTCCATATACGTCCATATTTAGAC 57.698 37.037 0.00 0.00 0.00 2.59
2143 3910 9.031537 ACATGTCCATATACGTCCATATTTAGA 57.968 33.333 0.00 0.00 0.00 2.10
2144 3911 9.653287 AACATGTCCATATACGTCCATATTTAG 57.347 33.333 0.00 0.00 0.00 1.85
2146 3913 8.918202 AAACATGTCCATATACGTCCATATTT 57.082 30.769 0.00 0.00 0.00 1.40
2147 3914 8.918202 AAAACATGTCCATATACGTCCATATT 57.082 30.769 0.00 0.00 0.00 1.28
2148 3915 9.653287 CTAAAACATGTCCATATACGTCCATAT 57.347 33.333 0.00 0.00 0.00 1.78
2149 3916 8.644216 ACTAAAACATGTCCATATACGTCCATA 58.356 33.333 0.00 0.00 0.00 2.74
2150 3917 7.441157 CACTAAAACATGTCCATATACGTCCAT 59.559 37.037 0.00 0.00 0.00 3.41
2151 3918 6.759356 CACTAAAACATGTCCATATACGTCCA 59.241 38.462 0.00 0.00 0.00 4.02
2152 3919 6.759827 ACACTAAAACATGTCCATATACGTCC 59.240 38.462 0.00 0.00 0.00 4.79
2153 3920 7.490079 TGACACTAAAACATGTCCATATACGTC 59.510 37.037 0.00 0.86 43.84 4.34
2154 3921 7.324935 TGACACTAAAACATGTCCATATACGT 58.675 34.615 0.00 0.00 43.84 3.57
2155 3922 7.764695 TGACACTAAAACATGTCCATATACG 57.235 36.000 0.00 0.00 43.84 3.06
2159 3926 9.508642 TGTATTTGACACTAAAACATGTCCATA 57.491 29.630 0.00 0.00 43.84 2.74
2160 3927 8.402798 TGTATTTGACACTAAAACATGTCCAT 57.597 30.769 0.00 0.00 43.84 3.41
2161 3928 7.809546 TGTATTTGACACTAAAACATGTCCA 57.190 32.000 0.00 0.00 43.84 4.02
2162 3929 9.341899 GAATGTATTTGACACTAAAACATGTCC 57.658 33.333 0.00 0.00 43.84 4.02
2163 3930 9.051027 CGAATGTATTTGACACTAAAACATGTC 57.949 33.333 0.00 0.00 42.17 3.06
2164 3931 8.564574 ACGAATGTATTTGACACTAAAACATGT 58.435 29.630 0.00 0.00 42.17 3.21
2165 3932 8.948853 ACGAATGTATTTGACACTAAAACATG 57.051 30.769 0.00 0.00 42.17 3.21
2203 3970 5.817784 TCCGTCCCCAATTATTTGTCTTAA 58.182 37.500 0.00 0.00 0.00 1.85
2337 4104 5.456921 TTGCCCTTCTTATCTCCATCTTT 57.543 39.130 0.00 0.00 0.00 2.52
2407 4174 5.942826 AGAGATTAGGAACAAAGAAAGCAGG 59.057 40.000 0.00 0.00 0.00 4.85
2427 4194 0.391661 GGGTGCGCATTTGAGAGAGA 60.392 55.000 15.91 0.00 0.00 3.10
2472 4239 0.108804 CGTTGCCATCTCCGTACACT 60.109 55.000 0.00 0.00 0.00 3.55
2536 4303 1.555075 TGTCAGAGGTGGGATTACTGC 59.445 52.381 0.00 0.00 0.00 4.40
2576 4399 4.707105 TCGTCCATGAATATCACTGCATT 58.293 39.130 0.00 0.00 0.00 3.56
2674 4497 5.770162 AGTTTGACTAAGGATGTTTTCTGGG 59.230 40.000 0.00 0.00 0.00 4.45
2697 4520 1.136305 CCCATTTGGCAATCAGCTCAG 59.864 52.381 0.00 0.00 44.79 3.35
2937 4760 5.049405 GCCATTGTACCTACTAATCATGTGC 60.049 44.000 0.00 0.00 0.00 4.57
3105 4929 4.366267 ACTTCCTGTGGACAAGAGGATAT 58.634 43.478 0.00 0.00 35.77 1.63
3320 5145 7.671398 ACTTATTGAAGTGGATGAAAATCAGGT 59.329 33.333 0.00 0.00 44.50 4.00
3517 5344 5.895534 AGATCAGTTTTTATCATGGCATGGT 59.104 36.000 26.15 22.55 0.00 3.55
3549 5376 6.493189 TGTTTATATGAGACCACCTGCATA 57.507 37.500 0.00 0.00 0.00 3.14
3753 5588 1.874231 TCAACCGCGAATTTGCTTGTA 59.126 42.857 15.65 2.90 0.00 2.41
3801 5636 3.627123 CGCCATCTGATTTGTAATGTCCA 59.373 43.478 0.00 0.00 0.00 4.02
3862 5697 6.248569 TCCTCCCCTATATCAAAGTTTGTC 57.751 41.667 15.08 0.00 0.00 3.18
3931 5766 3.861840 ACGTTTCATGTAGTCCTCCATG 58.138 45.455 0.00 0.00 39.82 3.66
3987 5822 3.606886 CAACGTCTGCTGGTAAGGT 57.393 52.632 0.00 0.00 0.00 3.50
4027 5862 7.120923 AGAACGTCATATATTTAGGTGTGGT 57.879 36.000 0.00 0.00 0.00 4.16
4049 5884 5.806654 ACCAAAACGTTAGGGTACTAAGA 57.193 39.130 19.02 0.00 39.73 2.10
4050 5885 6.101997 CCTACCAAAACGTTAGGGTACTAAG 58.898 44.000 20.90 15.17 39.73 2.18
4053 5888 3.306989 GCCTACCAAAACGTTAGGGTACT 60.307 47.826 20.90 6.41 34.88 2.73
4055 5890 2.636893 TGCCTACCAAAACGTTAGGGTA 59.363 45.455 22.44 22.44 34.88 3.69
4056 5891 1.420891 TGCCTACCAAAACGTTAGGGT 59.579 47.619 22.58 22.58 37.43 4.34
4057 5892 2.188062 TGCCTACCAAAACGTTAGGG 57.812 50.000 20.03 17.45 0.00 3.53
4058 5893 3.566742 AGTTTGCCTACCAAAACGTTAGG 59.433 43.478 15.85 15.85 44.48 2.69
4060 5895 4.213906 GCTAGTTTGCCTACCAAAACGTTA 59.786 41.667 0.00 0.00 44.48 3.18
4061 5896 3.004002 GCTAGTTTGCCTACCAAAACGTT 59.996 43.478 0.00 0.00 44.48 3.99
4063 5898 3.197434 GCTAGTTTGCCTACCAAAACG 57.803 47.619 0.00 0.00 44.48 3.60
4076 5911 7.820578 ATATGACGTTCTAGTAGGCTAGTTT 57.179 36.000 7.27 0.00 43.86 2.66
4151 7715 3.081061 TGACACATGTGGTAAGCAATCC 58.919 45.455 28.64 6.08 34.19 3.01
4218 7782 3.561143 TGTGCTGTAGTGAACCCATTTT 58.439 40.909 0.00 0.00 0.00 1.82
4425 8003 7.335422 GCATGTAGAGGAAAATCATATAGTGGG 59.665 40.741 0.00 0.00 0.00 4.61
4476 9209 5.021033 TGAAAAATGTTCCACTTGCATGT 57.979 34.783 0.00 0.00 0.00 3.21
4669 9404 2.036604 TCGTGTGTTGCTGTAGGAATCA 59.963 45.455 0.00 0.00 0.00 2.57
4685 9420 5.315348 GAGGGAGTAGATAATACCTCGTGT 58.685 45.833 2.95 0.00 35.65 4.49
4687 9422 4.565236 CGGAGGGAGTAGATAATACCTCGT 60.565 50.000 11.45 0.00 44.13 4.18
4848 9585 7.674120 ACTAGTATAAACAACTTCCTCCGTTT 58.326 34.615 0.00 0.00 35.79 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.