Multiple sequence alignment - TraesCS7A01G211300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G211300 chr7A 100.000 4448 0 0 1 4448 174202205 174206652 0.000000e+00 8215
1 TraesCS7A01G211300 chr7A 98.286 175 3 0 3568 3742 610448747 610448573 1.550000e-79 307
2 TraesCS7A01G211300 chr7D 97.633 3295 43 7 299 3569 171311281 171314564 0.000000e+00 5620
3 TraesCS7A01G211300 chr7D 88.660 485 34 6 3985 4448 171314871 171315355 4.990000e-159 571
4 TraesCS7A01G211300 chr7D 99.000 300 3 0 1 300 171309929 171310228 5.060000e-149 538
5 TraesCS7A01G211300 chr7D 94.017 234 14 0 3743 3976 171314556 171314789 5.470000e-94 355
6 TraesCS7A01G211300 chr7D 95.745 188 6 2 3562 3748 616769162 616769348 7.230000e-78 302
7 TraesCS7A01G211300 chr7D 94.709 189 8 2 3569 3756 113715725 113715538 4.350000e-75 292
8 TraesCS7A01G211300 chr7B 93.412 3294 164 20 299 3569 137793074 137796337 0.000000e+00 4831
9 TraesCS7A01G211300 chr7B 92.131 305 17 3 1 300 137791493 137791795 1.480000e-114 424
10 TraesCS7A01G211300 chr7B 90.968 310 17 3 4105 4403 137796796 137797105 1.490000e-109 407
11 TraesCS7A01G211300 chr7B 94.915 236 11 1 3743 3977 137796329 137796564 7.030000e-98 368
12 TraesCS7A01G211300 chr6A 98.305 177 3 0 3568 3744 446526557 446526733 1.200000e-80 311
13 TraesCS7A01G211300 chr6A 78.392 398 61 14 2855 3232 521452099 521451707 7.440000e-58 235
14 TraesCS7A01G211300 chr3A 98.276 174 3 0 3571 3744 708640569 708640742 5.590000e-79 305
15 TraesCS7A01G211300 chr2A 97.727 176 4 0 3569 3744 470645822 470645647 2.010000e-78 303
16 TraesCS7A01G211300 chr1A 98.266 173 3 0 3570 3742 508278062 508278234 2.010000e-78 303
17 TraesCS7A01G211300 chr1A 97.714 175 4 0 3565 3739 133163558 133163732 7.230000e-78 302
18 TraesCS7A01G211300 chr3B 94.271 192 11 0 3562 3753 60139776 60139967 1.210000e-75 294
19 TraesCS7A01G211300 chr6D 78.535 396 60 14 2855 3230 379573524 379573914 2.070000e-58 237
20 TraesCS7A01G211300 chr6B 77.889 398 63 14 2855 3232 567398104 567397712 1.610000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G211300 chr7A 174202205 174206652 4447 False 8215.0 8215 100.0000 1 4448 1 chr7A.!!$F1 4447
1 TraesCS7A01G211300 chr7D 171309929 171315355 5426 False 1771.0 5620 94.8275 1 4448 4 chr7D.!!$F2 4447
2 TraesCS7A01G211300 chr7B 137791493 137797105 5612 False 1507.5 4831 92.8565 1 4403 4 chr7B.!!$F1 4402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 1994 0.308993 GGTTTGCATCAGCGGCTATC 59.691 55.000 0.26 0.0 46.23 2.08 F
923 2264 1.662629 CAGGATAGTGAAGCAGCAACG 59.337 52.381 0.00 0.0 0.00 4.10 F
947 2288 2.693074 CAAAGCTAACCACAAACCAGGT 59.307 45.455 0.00 0.0 40.61 4.00 F
1716 3060 3.008141 CAGCAGCAGCAGCAGATAT 57.992 52.632 12.92 0.0 45.49 1.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 3047 2.424601 TCACCAAAATATCTGCTGCTGC 59.575 45.455 8.89 8.89 40.20 5.25 R
2722 4088 3.824414 AACCATGTAAACGCTGCTTAC 57.176 42.857 0.00 1.46 0.00 2.34 R
2739 4105 8.719560 TTTTTCCCTGTTTACACAATAAAACC 57.280 30.769 0.00 0.00 35.23 3.27 R
3632 5005 0.036765 GCTGACGTGGGTTGTATCCA 60.037 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 7.231317 AGGTCATTTTCATAAGAAGAAAGCACA 59.769 33.333 0.00 0.00 36.45 4.57
192 198 2.093288 CAGCCTCTAGCCAAGAATGACA 60.093 50.000 0.00 0.00 45.47 3.58
516 1857 9.574516 CCTTTATACCATAATGGCTTCTAGTTT 57.425 33.333 0.00 0.00 42.67 2.66
572 1913 5.246656 TCCAGGCAAAGACAATTTCATCATT 59.753 36.000 0.00 0.00 0.00 2.57
585 1926 2.940158 TCATCATTCAGGGCCAATCAG 58.060 47.619 6.18 0.00 0.00 2.90
653 1994 0.308993 GGTTTGCATCAGCGGCTATC 59.691 55.000 0.26 0.00 46.23 2.08
923 2264 1.662629 CAGGATAGTGAAGCAGCAACG 59.337 52.381 0.00 0.00 0.00 4.10
947 2288 2.693074 CAAAGCTAACCACAAACCAGGT 59.307 45.455 0.00 0.00 40.61 4.00
991 2332 3.041940 GACGCCAAGTGTCACCCG 61.042 66.667 0.00 0.66 41.96 5.28
1716 3060 3.008141 CAGCAGCAGCAGCAGATAT 57.992 52.632 12.92 0.00 45.49 1.63
2505 3862 6.069963 ACACTCCAAAGAAAGTCTAGGCATAT 60.070 38.462 0.00 0.00 0.00 1.78
2722 4088 5.519206 GCAAGTCTAGTGTAGGTTTTATCCG 59.481 44.000 0.00 0.00 0.00 4.18
2739 4105 1.996898 TCCGTAAGCAGCGTTTACATG 59.003 47.619 12.75 0.00 31.94 3.21
2836 4205 5.124936 TCAATGAAGGATCTCAACTGCAATG 59.875 40.000 0.00 0.00 0.00 2.82
2872 4241 6.481644 TGCACATTTTAAGTGACCATTTTTCC 59.518 34.615 0.00 0.00 39.30 3.13
2996 4365 2.771943 AGTCCTTCACTTCAGACACCAA 59.228 45.455 0.00 0.00 26.56 3.67
3165 4534 2.034104 TCAGATGCAGACATGGAAGC 57.966 50.000 0.00 0.00 36.35 3.86
3566 4939 4.761975 TGATGAAGGGACGGTAATGTTAC 58.238 43.478 0.00 0.00 0.00 2.50
3567 4940 4.223255 TGATGAAGGGACGGTAATGTTACA 59.777 41.667 5.38 0.00 35.37 2.41
3568 4941 4.620589 TGAAGGGACGGTAATGTTACAA 57.379 40.909 5.38 0.00 35.37 2.41
3569 4942 4.571919 TGAAGGGACGGTAATGTTACAAG 58.428 43.478 5.38 1.77 35.37 3.16
3570 4943 3.622166 AGGGACGGTAATGTTACAAGG 57.378 47.619 5.38 0.00 35.37 3.61
3571 4944 2.237893 AGGGACGGTAATGTTACAAGGG 59.762 50.000 5.38 0.00 35.37 3.95
3572 4945 2.236893 GGGACGGTAATGTTACAAGGGA 59.763 50.000 5.38 0.00 35.37 4.20
3573 4946 3.528532 GGACGGTAATGTTACAAGGGAG 58.471 50.000 5.38 0.00 35.37 4.30
3574 4947 3.055602 GGACGGTAATGTTACAAGGGAGT 60.056 47.826 5.38 0.00 35.37 3.85
3575 4948 4.160252 GGACGGTAATGTTACAAGGGAGTA 59.840 45.833 5.38 0.00 35.37 2.59
3576 4949 5.077134 ACGGTAATGTTACAAGGGAGTAC 57.923 43.478 5.38 0.00 35.37 2.73
3577 4950 4.081476 ACGGTAATGTTACAAGGGAGTACC 60.081 45.833 5.38 0.00 35.90 3.34
3608 4981 7.348080 TCATCTAGATGAGACGTAATTTGGT 57.652 36.000 27.93 0.00 42.42 3.67
3609 4982 7.426410 TCATCTAGATGAGACGTAATTTGGTC 58.574 38.462 27.93 1.46 42.42 4.02
3610 4983 7.285629 TCATCTAGATGAGACGTAATTTGGTCT 59.714 37.037 27.93 9.96 45.71 3.85
3618 4991 4.935808 AGACGTAATTTGGTCTCATTCACC 59.064 41.667 5.52 0.00 39.18 4.02
3619 4992 4.906618 ACGTAATTTGGTCTCATTCACCT 58.093 39.130 0.00 0.00 34.66 4.00
3620 4993 4.695455 ACGTAATTTGGTCTCATTCACCTG 59.305 41.667 0.00 0.00 34.66 4.00
3621 4994 4.935205 CGTAATTTGGTCTCATTCACCTGA 59.065 41.667 0.00 0.00 34.66 3.86
3622 4995 5.411361 CGTAATTTGGTCTCATTCACCTGAA 59.589 40.000 0.00 0.00 38.56 3.02
3623 4996 6.072728 CGTAATTTGGTCTCATTCACCTGAAA 60.073 38.462 0.00 0.00 37.61 2.69
3624 4997 6.729690 AATTTGGTCTCATTCACCTGAAAA 57.270 33.333 0.00 0.00 37.61 2.29
3625 4998 6.729690 ATTTGGTCTCATTCACCTGAAAAA 57.270 33.333 0.00 0.00 37.61 1.94
3626 4999 5.514274 TTGGTCTCATTCACCTGAAAAAC 57.486 39.130 0.00 0.00 37.61 2.43
3627 5000 4.531854 TGGTCTCATTCACCTGAAAAACA 58.468 39.130 0.00 0.00 37.61 2.83
3628 5001 4.952957 TGGTCTCATTCACCTGAAAAACAA 59.047 37.500 0.00 0.00 37.61 2.83
3629 5002 5.067674 TGGTCTCATTCACCTGAAAAACAAG 59.932 40.000 0.00 0.00 37.61 3.16
3630 5003 5.299279 GGTCTCATTCACCTGAAAAACAAGA 59.701 40.000 0.00 0.00 37.61 3.02
3631 5004 6.183360 GGTCTCATTCACCTGAAAAACAAGAA 60.183 38.462 0.00 0.00 37.61 2.52
3632 5005 7.428826 GTCTCATTCACCTGAAAAACAAGAAT 58.571 34.615 0.00 0.00 37.61 2.40
3633 5006 7.380602 GTCTCATTCACCTGAAAAACAAGAATG 59.619 37.037 0.00 0.00 40.09 2.67
3634 5007 6.514947 TCATTCACCTGAAAAACAAGAATGG 58.485 36.000 0.00 0.00 39.70 3.16
3635 5008 6.323482 TCATTCACCTGAAAAACAAGAATGGA 59.677 34.615 0.00 0.00 39.70 3.41
3636 5009 6.729690 TTCACCTGAAAAACAAGAATGGAT 57.270 33.333 0.00 0.00 0.00 3.41
3637 5010 7.831691 TTCACCTGAAAAACAAGAATGGATA 57.168 32.000 0.00 0.00 0.00 2.59
3638 5011 7.214467 TCACCTGAAAAACAAGAATGGATAC 57.786 36.000 0.00 0.00 0.00 2.24
3651 5024 2.763651 GGATACAACCCACGTCAGC 58.236 57.895 0.00 0.00 0.00 4.26
3652 5025 0.036765 GGATACAACCCACGTCAGCA 60.037 55.000 0.00 0.00 0.00 4.41
3653 5026 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
3654 5027 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
3655 5028 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
3656 5029 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
3657 5030 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
3658 5031 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
3659 5032 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
3660 5033 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
3661 5034 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
3662 5035 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
3663 5036 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
3664 5037 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
3665 5038 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
3666 5039 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
3667 5040 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
3668 5041 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
3669 5042 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
3670 5043 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
3671 5044 2.285834 GCACACACGCATCTTATAGCAC 60.286 50.000 0.00 0.00 0.00 4.40
3672 5045 2.285220 CACACACGCATCTTATAGCACC 59.715 50.000 0.00 0.00 0.00 5.01
3673 5046 2.093711 ACACACGCATCTTATAGCACCA 60.094 45.455 0.00 0.00 0.00 4.17
3674 5047 2.285220 CACACGCATCTTATAGCACCAC 59.715 50.000 0.00 0.00 0.00 4.16
3675 5048 2.093711 ACACGCATCTTATAGCACCACA 60.094 45.455 0.00 0.00 0.00 4.17
3676 5049 3.133691 CACGCATCTTATAGCACCACAT 58.866 45.455 0.00 0.00 0.00 3.21
3677 5050 3.185188 CACGCATCTTATAGCACCACATC 59.815 47.826 0.00 0.00 0.00 3.06
3678 5051 2.738846 CGCATCTTATAGCACCACATCC 59.261 50.000 0.00 0.00 0.00 3.51
3679 5052 3.743521 GCATCTTATAGCACCACATCCA 58.256 45.455 0.00 0.00 0.00 3.41
3680 5053 4.136796 GCATCTTATAGCACCACATCCAA 58.863 43.478 0.00 0.00 0.00 3.53
3681 5054 4.763793 GCATCTTATAGCACCACATCCAAT 59.236 41.667 0.00 0.00 0.00 3.16
3682 5055 5.335426 GCATCTTATAGCACCACATCCAATG 60.335 44.000 0.00 0.00 0.00 2.82
3683 5056 4.717877 TCTTATAGCACCACATCCAATGG 58.282 43.478 0.00 0.00 43.43 3.16
3684 5057 1.696063 ATAGCACCACATCCAATGGC 58.304 50.000 0.00 0.00 41.31 4.40
3685 5058 0.625316 TAGCACCACATCCAATGGCT 59.375 50.000 0.00 0.00 41.31 4.75
3686 5059 0.625316 AGCACCACATCCAATGGCTA 59.375 50.000 0.00 0.00 41.31 3.93
3687 5060 1.216175 AGCACCACATCCAATGGCTAT 59.784 47.619 0.00 0.00 41.31 2.97
3688 5061 2.442878 AGCACCACATCCAATGGCTATA 59.557 45.455 0.00 0.00 41.31 1.31
3689 5062 3.117550 AGCACCACATCCAATGGCTATAA 60.118 43.478 0.00 0.00 41.31 0.98
3690 5063 3.636300 GCACCACATCCAATGGCTATAAA 59.364 43.478 0.00 0.00 41.31 1.40
3691 5064 4.099266 GCACCACATCCAATGGCTATAAAA 59.901 41.667 0.00 0.00 41.31 1.52
3692 5065 5.737063 GCACCACATCCAATGGCTATAAAAG 60.737 44.000 0.00 0.00 41.31 2.27
3693 5066 4.895297 ACCACATCCAATGGCTATAAAAGG 59.105 41.667 0.00 0.00 41.31 3.11
3694 5067 4.895297 CCACATCCAATGGCTATAAAAGGT 59.105 41.667 0.00 0.00 33.60 3.50
3695 5068 5.221303 CCACATCCAATGGCTATAAAAGGTG 60.221 44.000 0.00 0.00 33.60 4.00
3696 5069 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
3697 5070 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
3698 5071 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
3699 5072 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
3700 5073 5.598005 TCCAATGGCTATAAAAGGTGAATGG 59.402 40.000 0.00 0.00 0.00 3.16
3701 5074 5.221501 CCAATGGCTATAAAAGGTGAATGGG 60.222 44.000 0.00 0.00 0.00 4.00
3702 5075 4.871871 TGGCTATAAAAGGTGAATGGGA 57.128 40.909 0.00 0.00 0.00 4.37
3703 5076 4.532834 TGGCTATAAAAGGTGAATGGGAC 58.467 43.478 0.00 0.00 0.00 4.46
3704 5077 3.889538 GGCTATAAAAGGTGAATGGGACC 59.110 47.826 0.00 0.00 0.00 4.46
3705 5078 4.532834 GCTATAAAAGGTGAATGGGACCA 58.467 43.478 0.00 0.00 35.76 4.02
3706 5079 4.953579 GCTATAAAAGGTGAATGGGACCAA 59.046 41.667 0.00 0.00 35.76 3.67
3707 5080 5.420739 GCTATAAAAGGTGAATGGGACCAAA 59.579 40.000 0.00 0.00 35.76 3.28
3708 5081 6.098266 GCTATAAAAGGTGAATGGGACCAAAT 59.902 38.462 0.00 0.00 35.76 2.32
3709 5082 6.950860 ATAAAAGGTGAATGGGACCAAATT 57.049 33.333 0.00 0.00 35.76 1.82
3710 5083 9.196139 CTATAAAAGGTGAATGGGACCAAATTA 57.804 33.333 0.00 0.00 35.76 1.40
3711 5084 6.755542 AAAAGGTGAATGGGACCAAATTAA 57.244 33.333 0.00 0.00 35.76 1.40
3712 5085 6.755542 AAAGGTGAATGGGACCAAATTAAA 57.244 33.333 0.00 0.00 35.76 1.52
3713 5086 6.950860 AAGGTGAATGGGACCAAATTAAAT 57.049 33.333 0.00 0.00 35.76 1.40
3714 5087 6.544928 AGGTGAATGGGACCAAATTAAATC 57.455 37.500 0.00 0.00 35.76 2.17
3715 5088 6.263754 AGGTGAATGGGACCAAATTAAATCT 58.736 36.000 0.00 0.00 35.76 2.40
3716 5089 6.381133 AGGTGAATGGGACCAAATTAAATCTC 59.619 38.462 0.00 0.00 35.76 2.75
3717 5090 6.154363 GGTGAATGGGACCAAATTAAATCTCA 59.846 38.462 0.00 0.00 33.25 3.27
3718 5091 7.147672 GGTGAATGGGACCAAATTAAATCTCAT 60.148 37.037 0.00 0.00 33.60 2.90
3719 5092 7.922811 GTGAATGGGACCAAATTAAATCTCATC 59.077 37.037 0.00 0.00 30.88 2.92
3720 5093 7.840716 TGAATGGGACCAAATTAAATCTCATCT 59.159 33.333 0.00 0.00 30.88 2.90
3721 5094 9.354673 GAATGGGACCAAATTAAATCTCATCTA 57.645 33.333 0.00 0.00 30.88 1.98
3722 5095 8.930846 ATGGGACCAAATTAAATCTCATCTAG 57.069 34.615 0.00 0.00 24.96 2.43
3723 5096 8.101309 TGGGACCAAATTAAATCTCATCTAGA 57.899 34.615 0.00 0.00 39.02 2.43
3725 5098 9.007901 GGGACCAAATTAAATCTCATCTAGATG 57.992 37.037 24.32 24.32 44.56 2.90
3726 5099 9.784531 GGACCAAATTAAATCTCATCTAGATGA 57.215 33.333 29.17 29.17 44.56 2.92
3744 5117 6.981762 AGATGAGTTCTAGCAAAACTGATG 57.018 37.500 0.32 0.00 37.10 3.07
3745 5118 6.471146 AGATGAGTTCTAGCAAAACTGATGT 58.529 36.000 0.32 0.00 37.10 3.06
3746 5119 6.939163 AGATGAGTTCTAGCAAAACTGATGTT 59.061 34.615 0.32 0.00 37.10 2.71
3747 5120 8.097038 AGATGAGTTCTAGCAAAACTGATGTTA 58.903 33.333 0.32 0.00 37.10 2.41
3794 5167 2.564062 AGGACAATGCTGAAAATGGTGG 59.436 45.455 0.00 0.00 0.00 4.61
3850 5223 3.415457 AGAAGCCTAGCTAATCATGGC 57.585 47.619 11.98 11.98 38.25 4.40
4042 5489 0.533755 GGGAAGTGATGGCATCCTCG 60.534 60.000 23.92 0.00 32.41 4.63
4073 5520 0.520404 CATCTGCTGGTGTGCTTGTC 59.480 55.000 0.00 0.00 0.00 3.18
4094 5541 3.054655 TCGTCCCCAAAATCCTCCTAAAG 60.055 47.826 0.00 0.00 0.00 1.85
4095 5542 3.308188 CGTCCCCAAAATCCTCCTAAAGT 60.308 47.826 0.00 0.00 0.00 2.66
4103 5582 6.827251 CCAAAATCCTCCTAAAGTAAGGGTAC 59.173 42.308 0.00 0.00 37.24 3.34
4107 5586 3.635836 CCTCCTAAAGTAAGGGTACGAGG 59.364 52.174 0.00 0.00 37.24 4.63
4117 5600 0.750911 GGGTACGAGGACTGTCCGAT 60.751 60.000 20.49 12.52 42.75 4.18
4145 5628 1.475403 TTTTTCTTGCGTCCCCAACA 58.525 45.000 0.00 0.00 0.00 3.33
4164 5647 2.877691 GCGCAAAGGCCTACTTGG 59.122 61.111 17.06 9.43 39.96 3.61
4236 5722 9.554395 CTCTCATTCTCAGATAGTTCTACAGTA 57.446 37.037 0.00 0.00 0.00 2.74
4247 5733 3.642848 AGTTCTACAGTACCCAAACCGAA 59.357 43.478 0.00 0.00 0.00 4.30
4271 5757 3.722101 TCAAGGAAGGGGAGAGAAAACTT 59.278 43.478 0.00 0.00 0.00 2.66
4284 5770 4.335594 AGAGAAAACTTGAGTTTGGTTCCG 59.664 41.667 9.67 0.00 46.47 4.30
4301 5787 2.964978 GACGCATTGGGCAAAGCT 59.035 55.556 0.00 0.00 45.17 3.74
4404 5897 5.159209 CAAGTTCAACAGATGCATCCTTTC 58.841 41.667 23.06 7.70 0.00 2.62
4421 5914 7.706607 GCATCCTTTCCCATCTAACAAAATAAC 59.293 37.037 0.00 0.00 0.00 1.89
4443 5936 5.723295 ACTCAAAGAACAACACTGCAATTT 58.277 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 198 1.961277 CCCTGTGCGTCGCTTCTTT 60.961 57.895 19.50 0.00 0.00 2.52
221 227 1.013005 CCAGCAGCTGTCGTGAAGAG 61.013 60.000 21.26 0.00 0.00 2.85
572 1913 1.296392 CACGACTGATTGGCCCTGA 59.704 57.895 0.00 0.00 0.00 3.86
585 1926 8.941977 AGAGAACTCTCATATATATCACACGAC 58.058 37.037 9.34 0.00 45.21 4.34
653 1994 3.285484 ACTCAGATGCCAGCTAATTTGG 58.715 45.455 0.00 0.00 38.78 3.28
796 2137 3.269178 GCTCAGCTAAATCTGCTTGAGT 58.731 45.455 0.00 0.00 38.92 3.41
894 2235 3.614092 CTTCACTATCCTGTGCCAATGT 58.386 45.455 0.00 0.00 37.81 2.71
923 2264 2.691011 TGGTTTGTGGTTAGCTTTGGAC 59.309 45.455 0.00 0.00 0.00 4.02
947 2288 2.158279 TGGGGGCGAGGATTATAGTGTA 60.158 50.000 0.00 0.00 0.00 2.90
991 2332 9.218440 GAGTATACTAATAGTAGGGTGTCAGTC 57.782 40.741 5.09 0.00 33.66 3.51
1199 2543 5.596836 AACACAATTCATGAACAAGGTGT 57.403 34.783 21.15 21.15 39.67 4.16
1356 2700 2.031919 TTTGCGGCGTGGATCTGT 59.968 55.556 9.37 0.00 0.00 3.41
1643 2987 7.572523 TTATGGTTATCAGAATCTTTGCTGG 57.427 36.000 0.00 0.00 33.05 4.85
1701 3045 2.426024 ACCAAAATATCTGCTGCTGCTG 59.574 45.455 17.00 15.94 40.48 4.41
1702 3046 2.426024 CACCAAAATATCTGCTGCTGCT 59.574 45.455 17.00 0.00 40.48 4.24
1703 3047 2.424601 TCACCAAAATATCTGCTGCTGC 59.575 45.455 8.89 8.89 40.20 5.25
1704 3048 4.157289 ACTTCACCAAAATATCTGCTGCTG 59.843 41.667 0.00 0.00 0.00 4.41
1705 3049 4.157289 CACTTCACCAAAATATCTGCTGCT 59.843 41.667 0.00 0.00 0.00 4.24
1706 3050 4.418392 CACTTCACCAAAATATCTGCTGC 58.582 43.478 0.00 0.00 0.00 5.25
1707 3051 4.701651 TCCACTTCACCAAAATATCTGCTG 59.298 41.667 0.00 0.00 0.00 4.41
1716 3060 5.304686 AGTACTGATCCACTTCACCAAAA 57.695 39.130 0.00 0.00 0.00 2.44
2696 4062 6.535508 GGATAAAACCTACACTAGACTTGCTG 59.464 42.308 0.00 0.00 0.00 4.41
2698 4064 5.519206 CGGATAAAACCTACACTAGACTTGC 59.481 44.000 0.00 0.00 0.00 4.01
2699 4065 6.628185 ACGGATAAAACCTACACTAGACTTG 58.372 40.000 0.00 0.00 0.00 3.16
2722 4088 3.824414 AACCATGTAAACGCTGCTTAC 57.176 42.857 0.00 1.46 0.00 2.34
2739 4105 8.719560 TTTTTCCCTGTTTACACAATAAAACC 57.280 30.769 0.00 0.00 35.23 3.27
2836 4205 9.571810 TCACTTAAAATGTGCAATCATATTGAC 57.428 29.630 3.86 0.95 34.79 3.18
2872 4241 9.727859 ATTGAGAAAGATATCTGAGATGGAATG 57.272 33.333 5.86 0.00 0.00 2.67
2996 4365 2.909006 TCTCCTTGGAGCTGAAGTGAAT 59.091 45.455 11.61 0.00 0.00 2.57
3165 4534 0.314302 AGTTGAGAACGTCTGGTCCG 59.686 55.000 0.00 0.00 36.23 4.79
3566 4939 5.205056 AGATGAGTTCTAGGTACTCCCTTG 58.795 45.833 17.72 0.00 42.73 3.61
3567 4940 5.475398 AGATGAGTTCTAGGTACTCCCTT 57.525 43.478 17.72 7.62 42.73 3.95
3568 4941 7.475654 CATCTAGATGAGTTCTAGGTACTCCCT 60.476 44.444 25.78 16.34 44.99 4.20
3569 4942 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
3570 4943 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
3584 4957 7.285629 AGACCAAATTACGTCTCATCTAGATGA 59.714 37.037 29.17 29.17 42.99 2.92
3585 4958 7.429633 AGACCAAATTACGTCTCATCTAGATG 58.570 38.462 24.32 24.32 45.40 2.90
3586 4959 7.589958 AGACCAAATTACGTCTCATCTAGAT 57.410 36.000 0.00 0.00 34.15 1.98
3595 4968 4.935808 GGTGAATGAGACCAAATTACGTCT 59.064 41.667 6.98 6.98 42.02 4.18
3596 4969 4.935808 AGGTGAATGAGACCAAATTACGTC 59.064 41.667 0.00 0.00 35.76 4.34
3597 4970 4.695455 CAGGTGAATGAGACCAAATTACGT 59.305 41.667 0.00 0.00 35.76 3.57
3598 4971 4.935205 TCAGGTGAATGAGACCAAATTACG 59.065 41.667 0.00 0.00 35.76 3.18
3599 4972 6.817765 TTCAGGTGAATGAGACCAAATTAC 57.182 37.500 0.00 0.00 35.76 1.89
3600 4973 7.831691 TTTTCAGGTGAATGAGACCAAATTA 57.168 32.000 0.00 0.00 35.76 1.40
3601 4974 6.729690 TTTTCAGGTGAATGAGACCAAATT 57.270 33.333 0.00 0.00 35.76 1.82
3602 4975 6.098124 TGTTTTTCAGGTGAATGAGACCAAAT 59.902 34.615 0.00 0.00 35.76 2.32
3603 4976 5.420421 TGTTTTTCAGGTGAATGAGACCAAA 59.580 36.000 0.00 0.00 35.76 3.28
3604 4977 4.952957 TGTTTTTCAGGTGAATGAGACCAA 59.047 37.500 0.00 0.00 35.76 3.67
3605 4978 4.531854 TGTTTTTCAGGTGAATGAGACCA 58.468 39.130 0.00 0.00 35.76 4.02
3606 4979 5.299279 TCTTGTTTTTCAGGTGAATGAGACC 59.701 40.000 0.00 0.00 33.54 3.85
3607 4980 6.377327 TCTTGTTTTTCAGGTGAATGAGAC 57.623 37.500 0.00 0.00 33.54 3.36
3608 4981 7.428020 CATTCTTGTTTTTCAGGTGAATGAGA 58.572 34.615 0.00 0.00 39.44 3.27
3609 4982 6.643770 CCATTCTTGTTTTTCAGGTGAATGAG 59.356 38.462 12.52 2.29 39.44 2.90
3610 4983 6.323482 TCCATTCTTGTTTTTCAGGTGAATGA 59.677 34.615 12.52 0.02 39.44 2.57
3611 4984 6.514947 TCCATTCTTGTTTTTCAGGTGAATG 58.485 36.000 0.00 0.00 38.36 2.67
3612 4985 6.729690 TCCATTCTTGTTTTTCAGGTGAAT 57.270 33.333 0.00 0.00 33.54 2.57
3613 4986 6.729690 ATCCATTCTTGTTTTTCAGGTGAA 57.270 33.333 0.00 0.00 0.00 3.18
3614 4987 6.775142 TGTATCCATTCTTGTTTTTCAGGTGA 59.225 34.615 0.00 0.00 0.00 4.02
3615 4988 6.980593 TGTATCCATTCTTGTTTTTCAGGTG 58.019 36.000 0.00 0.00 0.00 4.00
3616 4989 7.433680 GTTGTATCCATTCTTGTTTTTCAGGT 58.566 34.615 0.00 0.00 0.00 4.00
3617 4990 6.868339 GGTTGTATCCATTCTTGTTTTTCAGG 59.132 38.462 0.00 0.00 0.00 3.86
3618 4991 6.868339 GGGTTGTATCCATTCTTGTTTTTCAG 59.132 38.462 0.00 0.00 0.00 3.02
3619 4992 6.325028 TGGGTTGTATCCATTCTTGTTTTTCA 59.675 34.615 0.00 0.00 0.00 2.69
3620 4993 6.645003 GTGGGTTGTATCCATTCTTGTTTTTC 59.355 38.462 0.00 0.00 36.58 2.29
3621 4994 6.521162 GTGGGTTGTATCCATTCTTGTTTTT 58.479 36.000 0.00 0.00 36.58 1.94
3622 4995 5.278758 CGTGGGTTGTATCCATTCTTGTTTT 60.279 40.000 0.00 0.00 36.58 2.43
3623 4996 4.217550 CGTGGGTTGTATCCATTCTTGTTT 59.782 41.667 0.00 0.00 36.58 2.83
3624 4997 3.756434 CGTGGGTTGTATCCATTCTTGTT 59.244 43.478 0.00 0.00 36.58 2.83
3625 4998 3.244770 ACGTGGGTTGTATCCATTCTTGT 60.245 43.478 0.00 0.00 36.58 3.16
3626 4999 3.343617 ACGTGGGTTGTATCCATTCTTG 58.656 45.455 0.00 0.00 36.58 3.02
3627 5000 3.008594 TGACGTGGGTTGTATCCATTCTT 59.991 43.478 0.00 0.00 36.58 2.52
3628 5001 2.569853 TGACGTGGGTTGTATCCATTCT 59.430 45.455 0.00 0.00 36.58 2.40
3629 5002 2.936498 CTGACGTGGGTTGTATCCATTC 59.064 50.000 0.00 0.00 36.58 2.67
3630 5003 2.939640 GCTGACGTGGGTTGTATCCATT 60.940 50.000 0.00 0.00 36.58 3.16
3631 5004 1.406887 GCTGACGTGGGTTGTATCCAT 60.407 52.381 0.00 0.00 36.58 3.41
3632 5005 0.036765 GCTGACGTGGGTTGTATCCA 60.037 55.000 0.00 0.00 0.00 3.41
3633 5006 0.036765 TGCTGACGTGGGTTGTATCC 60.037 55.000 0.00 0.00 0.00 2.59
3634 5007 1.076332 GTGCTGACGTGGGTTGTATC 58.924 55.000 0.00 0.00 0.00 2.24
3635 5008 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
3636 5009 0.531090 GTGTGCTGACGTGGGTTGTA 60.531 55.000 0.00 0.00 0.00 2.41
3637 5010 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
3638 5011 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
3639 5012 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
3640 5013 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
3641 5014 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
3642 5015 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
3643 5016 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
3644 5017 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
3645 5018 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
3646 5019 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
3647 5020 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
3648 5021 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
3649 5022 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
3650 5023 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
3651 5024 2.285220 GGTGCTATAAGATGCGTGTGTG 59.715 50.000 0.00 0.00 0.00 3.82
3652 5025 2.093711 TGGTGCTATAAGATGCGTGTGT 60.094 45.455 0.00 0.00 0.00 3.72
3653 5026 2.285220 GTGGTGCTATAAGATGCGTGTG 59.715 50.000 0.00 0.00 0.00 3.82
3654 5027 2.093711 TGTGGTGCTATAAGATGCGTGT 60.094 45.455 0.00 0.00 0.00 4.49
3655 5028 2.549926 TGTGGTGCTATAAGATGCGTG 58.450 47.619 0.00 0.00 0.00 5.34
3656 5029 2.979814 TGTGGTGCTATAAGATGCGT 57.020 45.000 0.00 0.00 0.00 5.24
3657 5030 2.738846 GGATGTGGTGCTATAAGATGCG 59.261 50.000 0.00 0.00 0.00 4.73
3658 5031 3.743521 TGGATGTGGTGCTATAAGATGC 58.256 45.455 0.00 0.00 0.00 3.91
3659 5032 5.182570 CCATTGGATGTGGTGCTATAAGATG 59.817 44.000 0.00 0.00 31.96 2.90
3660 5033 5.319453 CCATTGGATGTGGTGCTATAAGAT 58.681 41.667 0.00 0.00 31.96 2.40
3661 5034 4.717877 CCATTGGATGTGGTGCTATAAGA 58.282 43.478 0.00 0.00 31.96 2.10
3662 5035 3.254166 GCCATTGGATGTGGTGCTATAAG 59.746 47.826 6.95 0.00 39.01 1.73
3663 5036 3.117550 AGCCATTGGATGTGGTGCTATAA 60.118 43.478 6.95 0.00 39.01 0.98
3664 5037 2.442878 AGCCATTGGATGTGGTGCTATA 59.557 45.455 6.95 0.00 39.01 1.31
3665 5038 1.216175 AGCCATTGGATGTGGTGCTAT 59.784 47.619 6.95 0.00 39.01 2.97
3666 5039 0.625316 AGCCATTGGATGTGGTGCTA 59.375 50.000 6.95 0.00 39.01 3.49
3667 5040 0.625316 TAGCCATTGGATGTGGTGCT 59.375 50.000 6.95 0.00 39.01 4.40
3668 5041 1.696063 ATAGCCATTGGATGTGGTGC 58.304 50.000 6.95 0.00 39.01 5.01
3669 5042 5.221303 CCTTTTATAGCCATTGGATGTGGTG 60.221 44.000 6.95 0.00 39.01 4.17
3670 5043 4.895297 CCTTTTATAGCCATTGGATGTGGT 59.105 41.667 6.95 0.00 39.01 4.16
3671 5044 4.895297 ACCTTTTATAGCCATTGGATGTGG 59.105 41.667 6.95 0.00 39.80 4.17
3672 5045 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
3673 5046 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
3674 5047 6.713762 TTCACCTTTTATAGCCATTGGATG 57.286 37.500 6.95 0.00 0.00 3.51
3675 5048 6.268387 CCATTCACCTTTTATAGCCATTGGAT 59.732 38.462 6.95 1.78 0.00 3.41
3676 5049 5.598005 CCATTCACCTTTTATAGCCATTGGA 59.402 40.000 6.95 0.00 0.00 3.53
3677 5050 5.221501 CCCATTCACCTTTTATAGCCATTGG 60.222 44.000 0.00 0.00 0.00 3.16
3678 5051 5.598005 TCCCATTCACCTTTTATAGCCATTG 59.402 40.000 0.00 0.00 0.00 2.82
3679 5052 5.598417 GTCCCATTCACCTTTTATAGCCATT 59.402 40.000 0.00 0.00 0.00 3.16
3680 5053 5.140454 GTCCCATTCACCTTTTATAGCCAT 58.860 41.667 0.00 0.00 0.00 4.40
3681 5054 4.532834 GTCCCATTCACCTTTTATAGCCA 58.467 43.478 0.00 0.00 0.00 4.75
3682 5055 3.889538 GGTCCCATTCACCTTTTATAGCC 59.110 47.826 0.00 0.00 0.00 3.93
3683 5056 4.532834 TGGTCCCATTCACCTTTTATAGC 58.467 43.478 0.00 0.00 34.66 2.97
3684 5057 7.660030 ATTTGGTCCCATTCACCTTTTATAG 57.340 36.000 0.00 0.00 34.66 1.31
3685 5058 9.548631 TTAATTTGGTCCCATTCACCTTTTATA 57.451 29.630 0.00 0.00 34.66 0.98
3686 5059 6.950860 AATTTGGTCCCATTCACCTTTTAT 57.049 33.333 0.00 0.00 34.66 1.40
3687 5060 7.857404 TTAATTTGGTCCCATTCACCTTTTA 57.143 32.000 0.00 0.00 34.66 1.52
3688 5061 6.755542 TTAATTTGGTCCCATTCACCTTTT 57.244 33.333 0.00 0.00 34.66 2.27
3689 5062 6.755542 TTTAATTTGGTCCCATTCACCTTT 57.244 33.333 0.00 0.00 34.66 3.11
3690 5063 6.730507 AGATTTAATTTGGTCCCATTCACCTT 59.269 34.615 0.00 0.00 34.66 3.50
3691 5064 6.263754 AGATTTAATTTGGTCCCATTCACCT 58.736 36.000 0.00 0.00 34.66 4.00
3692 5065 6.154363 TGAGATTTAATTTGGTCCCATTCACC 59.846 38.462 0.00 0.00 0.00 4.02
3693 5066 7.169158 TGAGATTTAATTTGGTCCCATTCAC 57.831 36.000 0.00 0.00 0.00 3.18
3694 5067 7.840716 AGATGAGATTTAATTTGGTCCCATTCA 59.159 33.333 0.00 0.00 0.00 2.57
3695 5068 8.242729 AGATGAGATTTAATTTGGTCCCATTC 57.757 34.615 0.00 0.00 0.00 2.67
3696 5069 9.359653 CTAGATGAGATTTAATTTGGTCCCATT 57.640 33.333 0.00 0.00 0.00 3.16
3697 5070 8.727149 TCTAGATGAGATTTAATTTGGTCCCAT 58.273 33.333 0.00 0.00 0.00 4.00
3698 5071 8.101309 TCTAGATGAGATTTAATTTGGTCCCA 57.899 34.615 0.00 0.00 0.00 4.37
3699 5072 9.007901 CATCTAGATGAGATTTAATTTGGTCCC 57.992 37.037 25.78 0.00 42.70 4.46
3700 5073 9.784531 TCATCTAGATGAGATTTAATTTGGTCC 57.215 33.333 27.93 0.00 42.70 4.46
3720 5093 7.615403 ACATCAGTTTTGCTAGAACTCATCTA 58.385 34.615 0.00 0.00 39.71 1.98
3721 5094 6.471146 ACATCAGTTTTGCTAGAACTCATCT 58.529 36.000 0.00 0.00 42.48 2.90
3722 5095 6.734104 ACATCAGTTTTGCTAGAACTCATC 57.266 37.500 0.00 0.00 35.26 2.92
3723 5096 7.661437 TGTAACATCAGTTTTGCTAGAACTCAT 59.339 33.333 0.00 0.00 39.15 2.90
3724 5097 6.989759 TGTAACATCAGTTTTGCTAGAACTCA 59.010 34.615 0.00 0.00 39.15 3.41
3725 5098 7.421530 TGTAACATCAGTTTTGCTAGAACTC 57.578 36.000 0.00 0.00 39.15 3.01
3726 5099 7.801716 TTGTAACATCAGTTTTGCTAGAACT 57.198 32.000 0.00 0.00 39.15 3.01
3727 5100 7.113544 GCTTTGTAACATCAGTTTTGCTAGAAC 59.886 37.037 0.00 0.00 39.15 3.01
3728 5101 7.138736 GCTTTGTAACATCAGTTTTGCTAGAA 58.861 34.615 0.00 0.00 39.15 2.10
3729 5102 6.262049 TGCTTTGTAACATCAGTTTTGCTAGA 59.738 34.615 0.00 0.00 39.15 2.43
3730 5103 6.437928 TGCTTTGTAACATCAGTTTTGCTAG 58.562 36.000 0.00 0.00 39.15 3.42
3731 5104 6.384258 TGCTTTGTAACATCAGTTTTGCTA 57.616 33.333 0.00 0.00 39.15 3.49
3732 5105 5.261209 TGCTTTGTAACATCAGTTTTGCT 57.739 34.783 0.00 0.00 39.15 3.91
3733 5106 5.964887 TTGCTTTGTAACATCAGTTTTGC 57.035 34.783 0.00 0.00 39.15 3.68
3737 5110 9.683069 CTCTAAATTTGCTTTGTAACATCAGTT 57.317 29.630 0.00 0.00 41.74 3.16
3738 5111 7.809806 GCTCTAAATTTGCTTTGTAACATCAGT 59.190 33.333 0.00 0.00 0.00 3.41
3739 5112 7.809331 TGCTCTAAATTTGCTTTGTAACATCAG 59.191 33.333 0.00 0.00 0.00 2.90
3740 5113 7.656412 TGCTCTAAATTTGCTTTGTAACATCA 58.344 30.769 0.00 0.00 0.00 3.07
3741 5114 8.519492 TTGCTCTAAATTTGCTTTGTAACATC 57.481 30.769 0.00 0.00 0.00 3.06
3742 5115 8.359642 TCTTGCTCTAAATTTGCTTTGTAACAT 58.640 29.630 0.00 0.00 0.00 2.71
3743 5116 7.711846 TCTTGCTCTAAATTTGCTTTGTAACA 58.288 30.769 0.00 0.00 0.00 2.41
3744 5117 8.574196 TTCTTGCTCTAAATTTGCTTTGTAAC 57.426 30.769 0.00 0.00 0.00 2.50
3745 5118 9.593134 TTTTCTTGCTCTAAATTTGCTTTGTAA 57.407 25.926 0.00 0.00 0.00 2.41
3746 5119 9.593134 TTTTTCTTGCTCTAAATTTGCTTTGTA 57.407 25.926 0.00 0.00 0.00 2.41
3747 5120 8.491331 TTTTTCTTGCTCTAAATTTGCTTTGT 57.509 26.923 0.00 0.00 0.00 2.83
3794 5167 2.926242 TGTGTCTTCGGGTCCCCC 60.926 66.667 1.00 0.00 41.09 5.40
3850 5223 2.555199 CTGGAAGACCTATTCAAGCCG 58.445 52.381 0.00 0.00 34.07 5.52
3891 5265 2.805099 CAAGCCTTGAGTTGAGTGAGTC 59.195 50.000 0.00 0.00 0.00 3.36
4019 5466 1.707427 GGATGCCATCACTTCCCCTAT 59.293 52.381 7.06 0.00 0.00 2.57
4042 5489 0.886563 AGCAGATGAGCAAAAGTGGC 59.113 50.000 0.00 0.00 36.85 5.01
4073 5520 3.279434 CTTTAGGAGGATTTTGGGGACG 58.721 50.000 0.00 0.00 0.00 4.79
4094 5541 1.747924 GGACAGTCCTCGTACCCTTAC 59.252 57.143 12.94 0.00 32.53 2.34
4095 5542 1.679944 CGGACAGTCCTCGTACCCTTA 60.680 57.143 17.95 0.00 33.30 2.69
4103 5582 2.095668 GCTGTATATCGGACAGTCCTCG 60.096 54.545 17.95 5.47 45.09 4.63
4107 5586 6.480320 AGAAAAATGCTGTATATCGGACAGTC 59.520 38.462 6.10 0.00 45.09 3.51
4117 5600 4.095782 GGGACGCAAGAAAAATGCTGTATA 59.904 41.667 0.00 0.00 41.64 1.47
4123 5606 0.316841 TGGGGACGCAAGAAAAATGC 59.683 50.000 0.00 0.00 43.62 3.56
4145 5628 2.032071 AAGTAGGCCTTTGCGCGT 59.968 55.556 12.58 0.00 38.85 6.01
4149 5632 3.130516 GGAAATACCAAGTAGGCCTTTGC 59.869 47.826 12.58 1.33 43.14 3.68
4164 5647 7.464977 GCATTGTGCATTTCATTCTGGAAATAC 60.465 37.037 0.00 0.00 43.66 1.89
4236 5722 0.841289 TCCTTGAGTTCGGTTTGGGT 59.159 50.000 0.00 0.00 0.00 4.51
4247 5733 2.723530 TTCTCTCCCCTTCCTTGAGT 57.276 50.000 0.00 0.00 0.00 3.41
4271 5757 0.250124 ATGCGTCGGAACCAAACTCA 60.250 50.000 0.00 0.00 0.00 3.41
4284 5770 0.525761 TTAGCTTTGCCCAATGCGTC 59.474 50.000 11.60 0.00 45.60 5.19
4301 5787 4.410228 CCCAAGAGATTCCTGGATGAGTTA 59.590 45.833 0.00 0.00 0.00 2.24
4336 5825 0.741915 GCGGAACAAGTGGAACCAAA 59.258 50.000 0.00 0.00 37.80 3.28
4343 5832 1.238439 ACAGATTGCGGAACAAGTGG 58.762 50.000 0.00 0.00 42.87 4.00
4348 5837 4.819630 ACTAGAAAAACAGATTGCGGAACA 59.180 37.500 0.00 0.00 0.00 3.18
4404 5897 9.626045 GTTCTTTGAGTTATTTTGTTAGATGGG 57.374 33.333 0.00 0.00 0.00 4.00
4421 5914 6.455913 CCAAAATTGCAGTGTTGTTCTTTGAG 60.456 38.462 10.85 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.