Multiple sequence alignment - TraesCS7A01G208000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G208000 chr7A 100.000 5750 0 0 1 5750 170629181 170634930 0.000000e+00 10619.0
1 TraesCS7A01G208000 chr7A 96.552 87 3 0 16 102 103105208 103105122 1.670000e-30 145.0
2 TraesCS7A01G208000 chr7D 91.378 4106 211 64 224 4269 168423372 168427394 0.000000e+00 5489.0
3 TraesCS7A01G208000 chr7D 96.647 686 23 0 4268 4953 168427488 168428173 0.000000e+00 1140.0
4 TraesCS7A01G208000 chr7D 83.946 816 86 19 4969 5748 168441377 168442183 0.000000e+00 739.0
5 TraesCS7A01G208000 chr7D 90.476 84 6 2 149 230 168422987 168423070 6.090000e-20 110.0
6 TraesCS7A01G208000 chr7B 92.962 2586 127 31 364 2923 133742245 133744801 0.000000e+00 3716.0
7 TraesCS7A01G208000 chr7B 92.536 2023 100 24 2954 4957 133744803 133746793 0.000000e+00 2852.0
8 TraesCS7A01G208000 chr7B 88.095 588 64 4 5148 5731 133747011 133747596 0.000000e+00 693.0
9 TraesCS7A01G208000 chr7B 93.171 205 10 2 169 373 133734033 133734233 1.210000e-76 298.0
10 TraesCS7A01G208000 chr6A 97.590 83 2 0 16 98 428075555 428075473 6.010000e-30 143.0
11 TraesCS7A01G208000 chr6A 96.471 85 3 0 16 100 13505398 13505482 2.160000e-29 141.0
12 TraesCS7A01G208000 chr3A 97.561 82 2 0 16 97 744551629 744551710 2.160000e-29 141.0
13 TraesCS7A01G208000 chr4A 95.402 87 4 0 16 102 446594206 446594292 7.770000e-29 139.0
14 TraesCS7A01G208000 chr3B 97.531 81 2 0 16 96 742450080 742450160 7.770000e-29 139.0
15 TraesCS7A01G208000 chr3B 92.473 93 7 0 16 108 8013517 8013425 3.610000e-27 134.0
16 TraesCS7A01G208000 chr5A 95.349 86 4 0 16 101 678227812 678227897 2.790000e-28 137.0
17 TraesCS7A01G208000 chr2A 96.250 80 3 0 16 95 362184323 362184402 1.300000e-26 132.0
18 TraesCS7A01G208000 chr2A 100.000 28 0 0 1464 1491 730616760 730616733 1.000000e-02 52.8
19 TraesCS7A01G208000 chr2D 100.000 28 0 0 1464 1491 596553473 596553446 1.000000e-02 52.8
20 TraesCS7A01G208000 chr2B 100.000 28 0 0 1464 1491 725579630 725579603 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G208000 chr7A 170629181 170634930 5749 False 10619.000000 10619 100.000000 1 5750 1 chr7A.!!$F1 5749
1 TraesCS7A01G208000 chr7D 168422987 168428173 5186 False 2246.333333 5489 92.833667 149 4953 3 chr7D.!!$F2 4804
2 TraesCS7A01G208000 chr7D 168441377 168442183 806 False 739.000000 739 83.946000 4969 5748 1 chr7D.!!$F1 779
3 TraesCS7A01G208000 chr7B 133742245 133747596 5351 False 2420.333333 3716 91.197667 364 5731 3 chr7B.!!$F2 5367

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 632 0.105964 GTTTGAAAGTGCCCAACCCC 59.894 55.0 0.00 0.00 0.00 4.95 F
414 728 0.106708 AACACAGCAGATCGTGTGGT 59.893 50.0 22.14 16.62 46.95 4.16 F
1851 2201 0.243907 AGTGTTATGTCGTCGCAGCT 59.756 50.0 0.00 0.00 0.00 4.24 F
1852 2202 0.366871 GTGTTATGTCGTCGCAGCTG 59.633 55.0 10.11 10.11 0.00 4.24 F
3292 3656 0.112995 TCAGCAAGGCCCTCAATGTT 59.887 50.0 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2352 0.037303 CCTGCATGAACTGGTGGTCT 59.963 55.0 0.0 0.0 0.00 3.85 R
2113 2466 0.768221 AGGCTCTTCTGGGGACACAA 60.768 55.0 0.0 0.0 35.60 3.33 R
2930 3294 0.037590 ATAGGAAGCCGTTGGTTGCA 59.962 50.0 0.0 0.0 42.09 4.08 R
3474 3838 0.040425 CGCGACAACAAAGGGAAAGG 60.040 55.0 0.0 0.0 0.00 3.11 R
5244 5828 0.178981 ATTTCATGCAGCCCCGCTAT 60.179 50.0 0.0 0.0 36.40 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.423154 GGCGCCTTGGTCTCGTTG 61.423 66.667 22.15 0.00 0.00 4.10
27 28 3.423154 GCGCCTTGGTCTCGTTGG 61.423 66.667 0.00 0.00 0.00 3.77
28 29 2.030562 CGCCTTGGTCTCGTTGGT 59.969 61.111 0.00 0.00 0.00 3.67
29 30 1.597027 CGCCTTGGTCTCGTTGGTT 60.597 57.895 0.00 0.00 0.00 3.67
30 31 0.320073 CGCCTTGGTCTCGTTGGTTA 60.320 55.000 0.00 0.00 0.00 2.85
31 32 1.874739 CGCCTTGGTCTCGTTGGTTAA 60.875 52.381 0.00 0.00 0.00 2.01
32 33 2.223745 GCCTTGGTCTCGTTGGTTAAA 58.776 47.619 0.00 0.00 0.00 1.52
33 34 2.817844 GCCTTGGTCTCGTTGGTTAAAT 59.182 45.455 0.00 0.00 0.00 1.40
34 35 3.254903 GCCTTGGTCTCGTTGGTTAAATT 59.745 43.478 0.00 0.00 0.00 1.82
35 36 4.261867 GCCTTGGTCTCGTTGGTTAAATTT 60.262 41.667 0.00 0.00 0.00 1.82
36 37 5.048573 GCCTTGGTCTCGTTGGTTAAATTTA 60.049 40.000 0.00 0.00 0.00 1.40
37 38 6.349860 GCCTTGGTCTCGTTGGTTAAATTTAT 60.350 38.462 0.00 0.00 0.00 1.40
38 39 7.027161 CCTTGGTCTCGTTGGTTAAATTTATG 58.973 38.462 0.00 0.00 0.00 1.90
39 40 6.503589 TGGTCTCGTTGGTTAAATTTATGG 57.496 37.500 0.00 0.00 0.00 2.74
40 41 6.005198 TGGTCTCGTTGGTTAAATTTATGGT 58.995 36.000 0.00 0.00 0.00 3.55
41 42 6.149807 TGGTCTCGTTGGTTAAATTTATGGTC 59.850 38.462 0.00 0.00 0.00 4.02
42 43 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
43 44 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
44 45 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
45 46 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
46 47 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
47 48 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
48 49 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
49 50 8.769891 GTTGGTTAAATTTATGGTCAAAGTTGG 58.230 33.333 0.00 0.00 29.44 3.77
50 51 8.251383 TGGTTAAATTTATGGTCAAAGTTGGA 57.749 30.769 0.00 0.00 29.44 3.53
51 52 8.145122 TGGTTAAATTTATGGTCAAAGTTGGAC 58.855 33.333 1.31 1.31 29.44 4.02
57 58 2.928416 GTCAAAGTTGGACCTCGGG 58.072 57.895 0.00 0.00 0.00 5.14
58 59 0.395312 GTCAAAGTTGGACCTCGGGA 59.605 55.000 0.00 0.00 0.00 5.14
59 60 1.133363 TCAAAGTTGGACCTCGGGAA 58.867 50.000 0.00 0.00 0.00 3.97
60 61 1.071699 TCAAAGTTGGACCTCGGGAAG 59.928 52.381 0.00 0.00 0.00 3.46
61 62 0.250770 AAAGTTGGACCTCGGGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
62 63 2.434359 GTTGGACCTCGGGAAGCG 60.434 66.667 0.00 0.00 0.00 4.68
63 64 4.388499 TTGGACCTCGGGAAGCGC 62.388 66.667 0.00 0.00 0.00 5.92
81 82 3.683115 CGCGGACGCACTATATTTTAG 57.317 47.619 17.35 0.00 42.06 1.85
82 83 3.302555 CGCGGACGCACTATATTTTAGA 58.697 45.455 17.35 0.00 42.06 2.10
83 84 3.732219 CGCGGACGCACTATATTTTAGAA 59.268 43.478 17.35 0.00 42.06 2.10
84 85 4.384846 CGCGGACGCACTATATTTTAGAAT 59.615 41.667 17.35 0.00 42.06 2.40
85 86 5.609088 GCGGACGCACTATATTTTAGAATG 58.391 41.667 12.31 0.00 41.49 2.67
86 87 5.404366 GCGGACGCACTATATTTTAGAATGA 59.596 40.000 12.31 0.00 41.49 2.57
87 88 6.073980 GCGGACGCACTATATTTTAGAATGAA 60.074 38.462 12.31 0.00 41.49 2.57
88 89 7.502339 CGGACGCACTATATTTTAGAATGAAG 58.498 38.462 0.00 0.00 0.00 3.02
89 90 7.359264 CGGACGCACTATATTTTAGAATGAAGG 60.359 40.741 0.00 0.00 0.00 3.46
90 91 7.095187 GGACGCACTATATTTTAGAATGAAGGG 60.095 40.741 0.00 0.00 0.00 3.95
91 92 7.506114 ACGCACTATATTTTAGAATGAAGGGA 58.494 34.615 0.00 0.00 0.00 4.20
92 93 7.657761 ACGCACTATATTTTAGAATGAAGGGAG 59.342 37.037 0.00 0.00 0.00 4.30
93 94 7.657761 CGCACTATATTTTAGAATGAAGGGAGT 59.342 37.037 0.00 0.00 0.00 3.85
94 95 9.998106 GCACTATATTTTAGAATGAAGGGAGTA 57.002 33.333 0.00 0.00 0.00 2.59
103 104 6.718522 AGAATGAAGGGAGTACTAGTTAGC 57.281 41.667 0.00 0.00 0.00 3.09
104 105 5.599242 AGAATGAAGGGAGTACTAGTTAGCC 59.401 44.000 0.00 0.00 0.00 3.93
105 106 4.326600 TGAAGGGAGTACTAGTTAGCCA 57.673 45.455 0.00 0.00 0.00 4.75
106 107 4.680407 TGAAGGGAGTACTAGTTAGCCAA 58.320 43.478 0.00 0.00 0.00 4.52
107 108 4.465305 TGAAGGGAGTACTAGTTAGCCAAC 59.535 45.833 0.00 0.00 34.67 3.77
108 109 4.057063 AGGGAGTACTAGTTAGCCAACA 57.943 45.455 0.00 0.00 37.10 3.33
109 110 4.422984 AGGGAGTACTAGTTAGCCAACAA 58.577 43.478 0.00 0.00 37.10 2.83
110 111 4.222366 AGGGAGTACTAGTTAGCCAACAAC 59.778 45.833 0.00 0.00 37.10 3.32
111 112 4.222366 GGGAGTACTAGTTAGCCAACAACT 59.778 45.833 0.00 0.00 39.50 3.16
112 113 5.279859 GGGAGTACTAGTTAGCCAACAACTT 60.280 44.000 0.00 0.00 37.42 2.66
113 114 5.868258 GGAGTACTAGTTAGCCAACAACTTC 59.132 44.000 0.00 0.00 37.42 3.01
114 115 6.295180 GGAGTACTAGTTAGCCAACAACTTCT 60.295 42.308 0.00 0.00 37.42 2.85
115 116 7.063934 AGTACTAGTTAGCCAACAACTTCTT 57.936 36.000 0.00 0.00 37.42 2.52
116 117 6.929606 AGTACTAGTTAGCCAACAACTTCTTG 59.070 38.462 0.00 0.00 37.42 3.02
117 118 5.681639 ACTAGTTAGCCAACAACTTCTTGT 58.318 37.500 0.00 0.00 42.81 3.16
118 119 4.900635 AGTTAGCCAACAACTTCTTGTG 57.099 40.909 0.00 0.00 39.88 3.33
119 120 3.066760 AGTTAGCCAACAACTTCTTGTGC 59.933 43.478 0.00 0.00 39.88 4.57
120 121 1.767759 AGCCAACAACTTCTTGTGCT 58.232 45.000 0.00 0.00 39.88 4.40
121 122 2.102578 AGCCAACAACTTCTTGTGCTT 58.897 42.857 0.00 0.00 39.88 3.91
122 123 2.159198 AGCCAACAACTTCTTGTGCTTG 60.159 45.455 0.00 0.00 39.88 4.01
123 124 2.195922 CCAACAACTTCTTGTGCTTGC 58.804 47.619 0.00 0.00 39.88 4.01
124 125 1.847999 CAACAACTTCTTGTGCTTGCG 59.152 47.619 0.00 0.00 39.88 4.85
125 126 1.094785 ACAACTTCTTGTGCTTGCGT 58.905 45.000 0.00 0.00 39.28 5.24
126 127 1.202177 ACAACTTCTTGTGCTTGCGTG 60.202 47.619 0.00 0.00 39.28 5.34
127 128 1.063912 CAACTTCTTGTGCTTGCGTGA 59.936 47.619 0.00 0.00 0.00 4.35
128 129 1.378531 ACTTCTTGTGCTTGCGTGAA 58.621 45.000 0.00 0.00 0.00 3.18
129 130 1.331756 ACTTCTTGTGCTTGCGTGAAG 59.668 47.619 0.00 0.00 37.50 3.02
130 131 0.662619 TTCTTGTGCTTGCGTGAAGG 59.337 50.000 0.00 0.00 31.56 3.46
131 132 0.179059 TCTTGTGCTTGCGTGAAGGA 60.179 50.000 0.00 0.00 31.56 3.36
132 133 0.236711 CTTGTGCTTGCGTGAAGGAG 59.763 55.000 0.00 0.00 31.69 3.69
133 134 0.179059 TTGTGCTTGCGTGAAGGAGA 60.179 50.000 0.00 0.00 31.69 3.71
134 135 0.179059 TGTGCTTGCGTGAAGGAGAA 60.179 50.000 0.00 0.00 31.69 2.87
135 136 0.944386 GTGCTTGCGTGAAGGAGAAA 59.056 50.000 0.00 0.00 31.69 2.52
136 137 1.537202 GTGCTTGCGTGAAGGAGAAAT 59.463 47.619 0.00 0.00 31.69 2.17
137 138 2.742053 GTGCTTGCGTGAAGGAGAAATA 59.258 45.455 0.00 0.00 31.69 1.40
138 139 3.188460 GTGCTTGCGTGAAGGAGAAATAA 59.812 43.478 0.00 0.00 31.69 1.40
139 140 3.436704 TGCTTGCGTGAAGGAGAAATAAG 59.563 43.478 0.00 0.00 31.56 1.73
140 141 3.181506 GCTTGCGTGAAGGAGAAATAAGG 60.182 47.826 0.00 0.00 31.56 2.69
141 142 3.695830 TGCGTGAAGGAGAAATAAGGT 57.304 42.857 0.00 0.00 0.00 3.50
142 143 4.015872 TGCGTGAAGGAGAAATAAGGTT 57.984 40.909 0.00 0.00 0.00 3.50
143 144 3.751175 TGCGTGAAGGAGAAATAAGGTTG 59.249 43.478 0.00 0.00 0.00 3.77
144 145 3.127030 GCGTGAAGGAGAAATAAGGTTGG 59.873 47.826 0.00 0.00 0.00 3.77
145 146 3.127030 CGTGAAGGAGAAATAAGGTTGGC 59.873 47.826 0.00 0.00 0.00 4.52
146 147 4.079253 GTGAAGGAGAAATAAGGTTGGCA 58.921 43.478 0.00 0.00 0.00 4.92
147 148 4.706962 GTGAAGGAGAAATAAGGTTGGCAT 59.293 41.667 0.00 0.00 0.00 4.40
160 161 3.704566 AGGTTGGCATACTCATAGTTCGA 59.295 43.478 0.00 0.00 0.00 3.71
189 190 5.576447 TTTGGTTCTCTTGACTGAAAACC 57.424 39.130 0.00 0.00 37.31 3.27
200 201 7.359595 TCTTGACTGAAAACCGATTACAATTG 58.640 34.615 3.24 3.24 0.00 2.32
206 207 7.033530 TGAAAACCGATTACAATTGAACACT 57.966 32.000 13.59 0.00 0.00 3.55
243 553 4.422546 TTTTAACCGAACCAAATAGCCG 57.577 40.909 0.00 0.00 0.00 5.52
249 559 1.260561 CGAACCAAATAGCCGGAATCG 59.739 52.381 5.05 0.00 0.00 3.34
267 577 8.888579 CGGAATCGGATTTAGCCTATATTATT 57.111 34.615 4.47 0.00 0.00 1.40
298 608 5.601583 AACTATTTGGTTTGGTTTCGGTT 57.398 34.783 0.00 0.00 0.00 4.44
318 628 1.475403 TTCGGTTTGAAAGTGCCCAA 58.525 45.000 0.00 0.00 32.37 4.12
322 632 0.105964 GTTTGAAAGTGCCCAACCCC 59.894 55.000 0.00 0.00 0.00 4.95
323 633 1.395826 TTTGAAAGTGCCCAACCCCG 61.396 55.000 0.00 0.00 0.00 5.73
347 661 1.442857 GAGACGTGTCTCGCTGGTG 60.443 63.158 13.75 0.00 45.49 4.17
348 662 2.430921 GACGTGTCTCGCTGGTGG 60.431 66.667 0.00 0.00 44.19 4.61
349 663 4.664677 ACGTGTCTCGCTGGTGGC 62.665 66.667 0.00 0.00 44.19 5.01
353 667 3.695606 GTCTCGCTGGTGGCAGGA 61.696 66.667 0.00 0.00 41.91 3.86
358 672 4.341783 GCTGGTGGCAGGAGCTGT 62.342 66.667 9.84 0.00 41.70 4.40
360 674 1.673665 CTGGTGGCAGGAGCTGTTC 60.674 63.158 0.00 0.00 41.70 3.18
361 675 2.121992 CTGGTGGCAGGAGCTGTTCT 62.122 60.000 0.00 0.00 41.70 3.01
362 676 1.673665 GGTGGCAGGAGCTGTTCTG 60.674 63.158 0.00 0.00 41.70 3.02
413 727 1.069703 CAAACACAGCAGATCGTGTGG 60.070 52.381 22.14 8.92 46.95 4.17
414 728 0.106708 AACACAGCAGATCGTGTGGT 59.893 50.000 22.14 16.62 46.95 4.16
418 732 3.490759 GCAGATCGTGTGGTGCGG 61.491 66.667 0.00 0.00 0.00 5.69
454 768 1.079197 TCGACCGACGCCTAGTACA 60.079 57.895 0.00 0.00 42.26 2.90
607 932 2.113986 GCTCCATCCCCCGAATGG 59.886 66.667 0.00 0.00 36.82 3.16
668 993 1.081376 GGTGTCACTGTCCGACTCG 60.081 63.158 2.35 0.00 34.37 4.18
720 1045 0.402121 AGGCGGAAGAAAAAGAGGCT 59.598 50.000 0.00 0.00 0.00 4.58
881 1207 3.961408 AGATAGCAAGATAGTCCGGTTGT 59.039 43.478 0.00 0.00 0.00 3.32
888 1228 1.933853 GATAGTCCGGTTGTGCATGAC 59.066 52.381 0.00 0.00 0.00 3.06
900 1240 1.078426 GCATGACTAACCCTGCCGT 60.078 57.895 0.00 0.00 0.00 5.68
941 1281 7.610580 AGTTGGGGAATTTAGTTGAATTTCA 57.389 32.000 0.00 0.00 31.68 2.69
981 1321 1.920325 CCAGAACAGAGCAGGGGGA 60.920 63.158 0.00 0.00 0.00 4.81
1005 1345 0.324368 GGGTTTGGGGGAGAATGTCC 60.324 60.000 0.00 0.00 46.10 4.02
1068 1408 1.866015 TGAACGACTGGAGATGGGAT 58.134 50.000 0.00 0.00 0.00 3.85
1088 1428 1.000396 GCAACCTCTTCCTGGCCAT 60.000 57.895 5.51 0.00 0.00 4.40
1273 1619 1.533625 TGAAAGGATTGCTGTTCGGG 58.466 50.000 0.00 0.00 0.00 5.14
1305 1651 1.893919 GCGAAGAAGAGGGACCTGCT 61.894 60.000 0.00 0.00 0.00 4.24
1448 1794 4.343811 AGTCGACTCTTGTTCGTATCAG 57.656 45.455 13.58 0.00 0.00 2.90
1467 1813 4.433615 TCAGAAACATAGAGCATCGGTTC 58.566 43.478 0.00 0.00 42.67 3.62
1498 1844 1.399791 GCAGCAGGTTAGTCAGCAATC 59.600 52.381 0.00 0.00 0.00 2.67
1558 1904 6.290294 AGGGGAAGAATCATTTGACATTTG 57.710 37.500 0.00 0.00 0.00 2.32
1559 1905 5.781818 AGGGGAAGAATCATTTGACATTTGT 59.218 36.000 0.00 0.00 0.00 2.83
1692 2039 3.256631 CCTTGGGTGAAAATCAGTCCTTG 59.743 47.826 0.00 0.00 0.00 3.61
1713 2060 2.038557 GACCAACACCTTGCTCCTCTTA 59.961 50.000 0.00 0.00 0.00 2.10
1760 2107 4.357142 TGTAAGTTTCTCGGATCGTATGC 58.643 43.478 0.00 0.00 0.00 3.14
1763 2110 2.165641 AGTTTCTCGGATCGTATGCACA 59.834 45.455 0.00 0.00 0.00 4.57
1766 2113 2.567985 TCTCGGATCGTATGCACAGTA 58.432 47.619 0.00 0.00 0.00 2.74
1771 2118 3.002965 CGGATCGTATGCACAGTACAGTA 59.997 47.826 0.00 0.00 0.00 2.74
1775 2122 5.475273 TCGTATGCACAGTACAGTACTAC 57.525 43.478 13.12 6.02 37.23 2.73
1850 2200 0.366871 CAGTGTTATGTCGTCGCAGC 59.633 55.000 0.00 0.00 0.00 5.25
1851 2201 0.243907 AGTGTTATGTCGTCGCAGCT 59.756 50.000 0.00 0.00 0.00 4.24
1852 2202 0.366871 GTGTTATGTCGTCGCAGCTG 59.633 55.000 10.11 10.11 0.00 4.24
2002 2352 7.691213 TGGTAACTATGTTGGGAATCAAAGTA 58.309 34.615 0.00 0.00 35.40 2.24
2053 2406 0.806868 TGATTAACTGCTGCTGCTGC 59.193 50.000 22.51 22.51 41.07 5.25
2054 2407 1.093159 GATTAACTGCTGCTGCTGCT 58.907 50.000 27.67 13.59 41.07 4.24
2055 2408 0.809385 ATTAACTGCTGCTGCTGCTG 59.191 50.000 27.75 27.75 41.07 4.41
2113 2466 1.134128 TGATGTGTGCACCACTTGACT 60.134 47.619 15.69 0.00 44.81 3.41
2221 2574 7.499232 ACATTATTTAGGTTGATTCTCTTCGGG 59.501 37.037 0.00 0.00 0.00 5.14
2223 2576 6.555463 ATTTAGGTTGATTCTCTTCGGGTA 57.445 37.500 0.00 0.00 0.00 3.69
2241 2596 3.939066 GGTACCTGCTGACTATTGTGTT 58.061 45.455 4.06 0.00 0.00 3.32
2249 2604 5.063204 TGCTGACTATTGTGTTTTAGCTGT 58.937 37.500 0.00 0.00 0.00 4.40
2251 2606 6.878923 TGCTGACTATTGTGTTTTAGCTGTAT 59.121 34.615 0.00 0.00 0.00 2.29
2297 2652 3.623060 TGCAGAGCCGAACAGATAAAATC 59.377 43.478 0.00 0.00 0.00 2.17
2298 2653 3.623060 GCAGAGCCGAACAGATAAAATCA 59.377 43.478 0.00 0.00 0.00 2.57
2309 2664 7.850003 CGAACAGATAAAATCATCTTCAAGCTC 59.150 37.037 0.00 0.00 32.83 4.09
2384 2739 5.473066 ACCATATGCAAATTGGGAATAGC 57.527 39.130 15.04 0.00 34.72 2.97
2412 2768 7.875041 CCTCTCTTGACAACTTTATCTCTTCAA 59.125 37.037 0.00 0.00 0.00 2.69
2484 2842 4.568072 TTTGCAGATCCTAAACTGGCTA 57.432 40.909 0.00 0.00 35.05 3.93
2582 2940 4.008916 ACTGGATGTGGGATAAGGTAGT 57.991 45.455 0.00 0.00 0.00 2.73
2587 2945 2.546899 TGTGGGATAAGGTAGTGCTGT 58.453 47.619 0.00 0.00 0.00 4.40
2639 2999 8.719645 AAGCATATCTCTTCTCTATGGTTACT 57.280 34.615 4.85 0.00 40.10 2.24
2653 3013 9.751542 CTCTATGGTTACTAGTCAATAAACTGG 57.248 37.037 0.00 0.00 34.22 4.00
2787 3147 5.192522 TCCAGCTCCTTGGATAGAAAATCTT 59.807 40.000 0.00 0.00 42.24 2.40
2804 3164 7.607991 AGAAAATCTTATTAGCATATCCACCCG 59.392 37.037 0.00 0.00 0.00 5.28
2819 3179 1.057851 ACCCGTGGTTTCTGGGAGAA 61.058 55.000 3.03 0.00 46.41 2.87
2827 3187 2.041755 GGTTTCTGGGAGAAAGGATGGT 59.958 50.000 0.00 0.00 44.07 3.55
2913 3277 9.455847 CTCTCTTTTACATCCTTGTTCTTTTTG 57.544 33.333 0.00 0.00 37.28 2.44
2940 3304 0.584396 ATGTACGTGTGCAACCAACG 59.416 50.000 0.00 9.98 42.82 4.10
2948 3312 0.887387 GTGCAACCAACGGCTTCCTA 60.887 55.000 0.00 0.00 0.00 2.94
2964 3328 3.885976 TCCTATGTTTGTGGTTTCCCA 57.114 42.857 0.00 0.00 38.87 4.37
3045 3409 5.352284 CATCAGATACTGTGTGTAACTCCC 58.648 45.833 0.00 0.00 38.04 4.30
3057 3421 2.196997 TAACTCCCATTGCGGCTGCT 62.197 55.000 20.27 0.00 43.34 4.24
3059 3423 3.060020 CTCCCATTGCGGCTGCTTG 62.060 63.158 20.27 15.72 43.34 4.01
3069 3433 1.075542 CGGCTGCTTGTAATTCGACA 58.924 50.000 0.00 0.00 0.00 4.35
3081 3445 5.297547 TGTAATTCGACAGCAAACTTCTCT 58.702 37.500 0.00 0.00 0.00 3.10
3093 3457 4.133078 CAAACTTCTCTGTGAGAGGCTTT 58.867 43.478 6.61 4.78 42.54 3.51
3109 3473 4.265073 AGGCTTTAACATAGCTCAACCAG 58.735 43.478 0.00 0.00 38.67 4.00
3162 3526 2.348998 GCACTGACCTGACCTGGG 59.651 66.667 0.00 0.00 0.00 4.45
3292 3656 0.112995 TCAGCAAGGCCCTCAATGTT 59.887 50.000 0.00 0.00 0.00 2.71
3317 3681 3.593780 ACCTTTTCTTGCTCCTTCCCTAT 59.406 43.478 0.00 0.00 0.00 2.57
3345 3709 2.206223 GGAAGGGGGTTCATAGAGGTT 58.794 52.381 0.00 0.00 36.82 3.50
3347 3711 3.391626 GGAAGGGGGTTCATAGAGGTTAG 59.608 52.174 0.00 0.00 36.82 2.34
3352 3716 6.218053 AGGGGGTTCATAGAGGTTAGTTATT 58.782 40.000 0.00 0.00 0.00 1.40
3353 3717 6.681541 AGGGGGTTCATAGAGGTTAGTTATTT 59.318 38.462 0.00 0.00 0.00 1.40
3356 3720 7.932491 GGGGTTCATAGAGGTTAGTTATTTCTC 59.068 40.741 0.00 0.00 0.00 2.87
3357 3721 7.932491 GGGTTCATAGAGGTTAGTTATTTCTCC 59.068 40.741 0.00 0.00 0.00 3.71
3358 3722 8.706521 GGTTCATAGAGGTTAGTTATTTCTCCT 58.293 37.037 0.00 0.00 0.00 3.69
3365 3729 9.106977 AGAGGTTAGTTATTTCTCCTTTTCTCT 57.893 33.333 0.00 0.00 0.00 3.10
3366 3730 9.373603 GAGGTTAGTTATTTCTCCTTTTCTCTC 57.626 37.037 0.00 0.00 0.00 3.20
3367 3731 9.106977 AGGTTAGTTATTTCTCCTTTTCTCTCT 57.893 33.333 0.00 0.00 0.00 3.10
3368 3732 9.727859 GGTTAGTTATTTCTCCTTTTCTCTCTT 57.272 33.333 0.00 0.00 0.00 2.85
3378 3742 8.839310 TCTCCTTTTCTCTCTTACATTCTTTG 57.161 34.615 0.00 0.00 0.00 2.77
3474 3838 6.804770 AGATTATGATCAGAGCAGCATTTC 57.195 37.500 0.09 0.00 34.60 2.17
3478 3842 3.693807 TGATCAGAGCAGCATTTCCTTT 58.306 40.909 0.00 0.00 0.00 3.11
3493 3857 0.040425 CCTTTCCCTTTGTTGTCGCG 60.040 55.000 0.00 0.00 0.00 5.87
3508 3872 3.575630 TGTCGCGGAAGAATCTATATGC 58.424 45.455 6.13 0.00 0.00 3.14
3532 3896 3.868077 GTGAGATTCGAATGTTGGAGGAG 59.132 47.826 16.96 0.00 0.00 3.69
3566 3939 5.549742 AATTGCATTTGGTGAAGGAAGAA 57.450 34.783 0.00 0.00 0.00 2.52
3583 3956 4.337836 GGAAGAAAAGATCTGATGGCTTCC 59.662 45.833 18.92 18.92 42.08 3.46
3604 3977 0.038801 GCAGCCAAGCCTTGAAGTTC 60.039 55.000 5.89 0.00 0.00 3.01
3607 3980 0.600057 GCCAAGCCTTGAAGTTCCTG 59.400 55.000 5.89 0.00 0.00 3.86
3619 3992 5.178096 TGAAGTTCCTGCATGAAATAGGA 57.822 39.130 5.96 0.29 38.78 2.94
3628 4001 4.539726 TGCATGAAATAGGATGGCTTCTT 58.460 39.130 0.00 0.00 0.00 2.52
3658 4031 2.159184 CCACACACGAGCTACATCATCT 60.159 50.000 0.00 0.00 0.00 2.90
3667 4040 3.576118 GAGCTACATCATCTAAGGCTCCA 59.424 47.826 0.00 0.00 38.80 3.86
3674 4047 4.574674 TCATCTAAGGCTCCACAACAAT 57.425 40.909 0.00 0.00 0.00 2.71
3675 4048 4.922206 TCATCTAAGGCTCCACAACAATT 58.078 39.130 0.00 0.00 0.00 2.32
3676 4049 5.324409 TCATCTAAGGCTCCACAACAATTT 58.676 37.500 0.00 0.00 0.00 1.82
3677 4050 5.415701 TCATCTAAGGCTCCACAACAATTTC 59.584 40.000 0.00 0.00 0.00 2.17
3678 4051 3.751175 TCTAAGGCTCCACAACAATTTCG 59.249 43.478 0.00 0.00 0.00 3.46
3679 4052 2.270352 AGGCTCCACAACAATTTCGA 57.730 45.000 0.00 0.00 0.00 3.71
3684 4057 3.736213 CTCCACAACAATTTCGACATCG 58.264 45.455 0.00 0.00 41.45 3.84
3687 4060 3.303725 CCACAACAATTTCGACATCGTGT 60.304 43.478 0.54 0.00 40.80 4.49
3688 4061 4.278858 CACAACAATTTCGACATCGTGTT 58.721 39.130 0.54 2.02 40.80 3.32
3694 4067 0.105224 TTCGACATCGTGTTGTGGGT 59.895 50.000 0.54 0.00 40.80 4.51
3698 4071 2.601266 CGACATCGTGTTGTGGGTTTTC 60.601 50.000 0.00 0.00 34.11 2.29
3715 4088 4.218417 GGTTTTCCTGCTGCAAGATTTAGA 59.782 41.667 3.02 0.00 33.97 2.10
3733 4106 0.322816 GATGGCTCCTGTCCTTTGCA 60.323 55.000 0.00 0.00 0.00 4.08
3751 4124 2.224843 TGCAGTTGATCAGGAATGGTGT 60.225 45.455 0.00 0.00 0.00 4.16
3757 4130 0.392998 ATCAGGAATGGTGTGGCGTC 60.393 55.000 0.00 0.00 0.00 5.19
3800 4173 4.504864 CCTTGTTCCAGGGCAATATCGATA 60.505 45.833 7.75 7.75 0.00 2.92
3881 4254 1.152860 TCGAAGCCTTTGGTTGCCA 60.153 52.632 0.00 0.00 30.94 4.92
4014 4387 1.674441 CCATGTTGCAGCTACCATCAG 59.326 52.381 4.43 0.00 0.00 2.90
4139 4513 7.954788 ACAACTACAACAACAACAACAAAAT 57.045 28.000 0.00 0.00 0.00 1.82
4343 4822 0.882042 AAGAATGCCCGCGATGCTAG 60.882 55.000 8.23 0.00 0.00 3.42
4371 4850 1.309950 CTCCAGAGGATTACGCTCGA 58.690 55.000 0.00 0.00 0.00 4.04
4450 4929 2.268076 GCGGCCCATGTGTCTGTTT 61.268 57.895 0.00 0.00 0.00 2.83
4483 4962 1.347221 GGTATCGCCGAAAAGCACG 59.653 57.895 0.00 0.00 0.00 5.34
4620 5099 4.792087 TTCTTGTCGAACAGGCCC 57.208 55.556 0.00 0.00 0.00 5.80
4933 5421 2.259266 TGCTGTGCTGTGATTGAGAA 57.741 45.000 0.00 0.00 0.00 2.87
4957 5445 1.066143 CAGTCACAAGAGCCCGGTATT 60.066 52.381 0.00 0.00 0.00 1.89
4967 5519 3.394606 AGAGCCCGGTATTGATATTTGGT 59.605 43.478 0.00 0.00 0.00 3.67
4975 5527 1.388547 TTGATATTTGGTCAGCGGGC 58.611 50.000 0.00 0.00 0.00 6.13
5058 5619 1.219124 GGCGCTTCTCCATCACTGA 59.781 57.895 7.64 0.00 0.00 3.41
5060 5621 1.416813 GCGCTTCTCCATCACTGACG 61.417 60.000 0.00 0.00 0.00 4.35
5065 5626 0.521735 TCTCCATCACTGACGACGTG 59.478 55.000 4.58 0.00 0.00 4.49
5088 5649 2.609737 CCATAATCGTCGGCCTCCTTAC 60.610 54.545 0.00 0.00 0.00 2.34
5114 5676 1.133790 GCTGATGATGCCCACAAAGAC 59.866 52.381 0.00 0.00 0.00 3.01
5123 5685 1.886542 GCCCACAAAGACGAATTCCTT 59.113 47.619 0.00 0.00 0.00 3.36
5126 5688 2.293122 CCACAAAGACGAATTCCTTGCA 59.707 45.455 0.00 0.00 0.00 4.08
5127 5689 3.558505 CACAAAGACGAATTCCTTGCAG 58.441 45.455 0.00 0.00 0.00 4.41
5130 5692 1.731720 AGACGAATTCCTTGCAGAGC 58.268 50.000 0.00 0.00 0.00 4.09
5133 5695 2.863137 GACGAATTCCTTGCAGAGCTAG 59.137 50.000 0.00 0.00 0.00 3.42
5141 5703 3.749665 CTTGCAGAGCTAGCTAGGAAT 57.250 47.619 19.38 0.00 32.43 3.01
5142 5704 4.070630 CTTGCAGAGCTAGCTAGGAATT 57.929 45.455 19.38 0.00 32.43 2.17
5144 5706 5.605534 CTTGCAGAGCTAGCTAGGAATTAA 58.394 41.667 19.38 6.18 32.43 1.40
5146 5708 6.179906 TGCAGAGCTAGCTAGGAATTAATT 57.820 37.500 19.38 0.00 0.00 1.40
5157 5740 7.664758 AGCTAGGAATTAATTTGATCAATGGC 58.335 34.615 9.40 4.64 0.00 4.40
5191 5774 8.723942 TTTGATCTATGAGGCTAGAGAAAAAC 57.276 34.615 0.00 0.00 31.50 2.43
5192 5776 6.821388 TGATCTATGAGGCTAGAGAAAAACC 58.179 40.000 0.00 0.00 31.50 3.27
5205 5789 6.109156 AGAGAAAAACCAACCACAAACTTT 57.891 33.333 0.00 0.00 0.00 2.66
5213 5797 4.930405 ACCAACCACAAACTTTAAAAACGG 59.070 37.500 0.00 0.00 0.00 4.44
5222 5806 7.868415 CACAAACTTTAAAAACGGATTATGGGA 59.132 33.333 0.00 0.00 0.00 4.37
5244 5828 2.871182 ATTTAGAGCTGCGATCGACA 57.129 45.000 21.57 15.18 0.00 4.35
5257 5841 4.529219 CGACATAGCGGGGCTGCA 62.529 66.667 0.50 0.00 40.10 4.41
5277 5861 5.403897 GCATGAAATCAAATGCAAGGATG 57.596 39.130 0.00 0.00 46.75 3.51
5304 5888 1.162698 CACGTGGAGTAACGAGAGGA 58.837 55.000 7.95 0.00 46.49 3.71
5310 5894 2.177734 GGAGTAACGAGAGGAAGGGTT 58.822 52.381 0.00 0.00 0.00 4.11
5311 5895 2.566279 GGAGTAACGAGAGGAAGGGTTT 59.434 50.000 0.00 0.00 0.00 3.27
5314 5898 3.838903 AGTAACGAGAGGAAGGGTTTCAT 59.161 43.478 0.00 0.00 34.90 2.57
5359 5943 3.295093 TCTGCAACATTTGTTTGGAGGA 58.705 40.909 4.11 0.00 35.83 3.71
5366 5950 5.009854 ACATTTGTTTGGAGGAGTTGTTG 57.990 39.130 0.00 0.00 0.00 3.33
5387 5971 1.493871 CCATCTTTCCTCCTGATGGCT 59.506 52.381 8.08 0.00 46.88 4.75
5443 6030 1.123928 GCTAGTGCTACCACCCTCAT 58.876 55.000 0.00 0.00 43.09 2.90
5457 6044 1.944676 CTCATCGGCTTACGCGGTC 60.945 63.158 12.47 0.00 43.86 4.79
5467 6054 0.531532 TTACGCGGTCCCGTTTTGAA 60.532 50.000 12.47 0.00 42.20 2.69
5474 6061 2.095415 CGGTCCCGTTTTGAATCCTTTC 60.095 50.000 0.00 0.00 34.35 2.62
5478 6065 1.539827 CCGTTTTGAATCCTTTCGGCT 59.460 47.619 0.00 0.00 34.39 5.52
5494 6081 1.531602 GCTGTGCTTCCCCCACTTT 60.532 57.895 0.00 0.00 34.38 2.66
5498 6085 0.467290 GTGCTTCCCCCACTTTCACA 60.467 55.000 0.00 0.00 0.00 3.58
5503 6090 3.500343 CTTCCCCCACTTTCACAAAGAT 58.500 45.455 3.00 0.00 41.02 2.40
5509 6096 3.828451 CCCACTTTCACAAAGATGGTCAT 59.172 43.478 3.00 0.00 41.02 3.06
5543 6131 4.641645 CCGGGCAGCACACCTCAA 62.642 66.667 0.00 0.00 0.00 3.02
5586 6176 2.050269 CAGAGGACAACGAGGGTGT 58.950 57.895 0.00 0.00 0.00 4.16
5593 6183 1.997606 GACAACGAGGGTGTAATTCCG 59.002 52.381 0.00 0.00 0.00 4.30
5628 6218 0.994995 CTTCTTGCGTCTCCATGTCG 59.005 55.000 0.00 0.00 0.00 4.35
5656 6246 1.004918 GTAGGCAGCTCACAACCGT 60.005 57.895 0.00 0.00 0.00 4.83
5657 6247 0.245539 GTAGGCAGCTCACAACCGTA 59.754 55.000 0.00 0.00 0.00 4.02
5691 6281 4.379339 AGAAGGCTTCTTAAGTAGCTCG 57.621 45.455 26.90 0.00 36.36 5.03
5692 6282 4.017808 AGAAGGCTTCTTAAGTAGCTCGA 58.982 43.478 26.90 0.00 36.36 4.04
5748 6338 1.811266 CAGGCGTCAAGGATCACCG 60.811 63.158 0.00 0.00 41.83 4.94
5749 6339 2.511600 GGCGTCAAGGATCACCGG 60.512 66.667 0.00 0.00 41.83 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.423154 CAACGAGACCAAGGCGCC 61.423 66.667 21.89 21.89 0.00 6.53
10 11 3.423154 CCAACGAGACCAAGGCGC 61.423 66.667 0.00 0.00 0.00 6.53
11 12 0.320073 TAACCAACGAGACCAAGGCG 60.320 55.000 0.00 0.00 0.00 5.52
12 13 1.886886 TTAACCAACGAGACCAAGGC 58.113 50.000 0.00 0.00 0.00 4.35
13 14 5.447624 AAATTTAACCAACGAGACCAAGG 57.552 39.130 0.00 0.00 0.00 3.61
14 15 7.027161 CCATAAATTTAACCAACGAGACCAAG 58.973 38.462 1.21 0.00 0.00 3.61
15 16 6.490721 ACCATAAATTTAACCAACGAGACCAA 59.509 34.615 1.21 0.00 0.00 3.67
16 17 6.005198 ACCATAAATTTAACCAACGAGACCA 58.995 36.000 1.21 0.00 0.00 4.02
17 18 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
18 19 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
19 20 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
20 21 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
21 22 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
22 23 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
23 24 8.769891 CCAACTTTGACCATAAATTTAACCAAC 58.230 33.333 1.21 0.00 0.00 3.77
24 25 8.705594 TCCAACTTTGACCATAAATTTAACCAA 58.294 29.630 1.21 2.19 0.00 3.67
25 26 8.145122 GTCCAACTTTGACCATAAATTTAACCA 58.855 33.333 1.21 0.00 0.00 3.67
26 27 7.601130 GGTCCAACTTTGACCATAAATTTAACC 59.399 37.037 1.21 0.00 38.76 2.85
27 28 8.364894 AGGTCCAACTTTGACCATAAATTTAAC 58.635 33.333 13.24 0.00 41.22 2.01
28 29 8.485578 AGGTCCAACTTTGACCATAAATTTAA 57.514 30.769 13.24 0.00 41.22 1.52
29 30 7.094549 CGAGGTCCAACTTTGACCATAAATTTA 60.095 37.037 13.24 0.00 41.22 1.40
30 31 6.294508 CGAGGTCCAACTTTGACCATAAATTT 60.295 38.462 13.24 0.00 41.22 1.82
31 32 5.183140 CGAGGTCCAACTTTGACCATAAATT 59.817 40.000 13.24 0.00 41.22 1.82
32 33 4.700213 CGAGGTCCAACTTTGACCATAAAT 59.300 41.667 13.24 0.00 41.22 1.40
33 34 4.069304 CGAGGTCCAACTTTGACCATAAA 58.931 43.478 13.24 0.00 41.22 1.40
34 35 3.558321 CCGAGGTCCAACTTTGACCATAA 60.558 47.826 13.24 0.00 41.22 1.90
35 36 2.027561 CCGAGGTCCAACTTTGACCATA 60.028 50.000 13.24 0.00 41.22 2.74
36 37 1.271379 CCGAGGTCCAACTTTGACCAT 60.271 52.381 13.24 0.72 41.22 3.55
37 38 0.107831 CCGAGGTCCAACTTTGACCA 59.892 55.000 13.24 0.00 41.22 4.02
38 39 0.605589 CCCGAGGTCCAACTTTGACC 60.606 60.000 4.16 4.16 39.18 4.02
39 40 0.395312 TCCCGAGGTCCAACTTTGAC 59.605 55.000 0.00 0.00 0.00 3.18
40 41 1.071699 CTTCCCGAGGTCCAACTTTGA 59.928 52.381 0.00 0.00 0.00 2.69
41 42 1.523758 CTTCCCGAGGTCCAACTTTG 58.476 55.000 0.00 0.00 0.00 2.77
42 43 0.250770 GCTTCCCGAGGTCCAACTTT 60.251 55.000 0.00 0.00 0.00 2.66
43 44 1.375326 GCTTCCCGAGGTCCAACTT 59.625 57.895 0.00 0.00 0.00 2.66
44 45 2.943978 CGCTTCCCGAGGTCCAACT 61.944 63.158 0.00 0.00 40.02 3.16
45 46 2.434359 CGCTTCCCGAGGTCCAAC 60.434 66.667 0.00 0.00 40.02 3.77
46 47 4.388499 GCGCTTCCCGAGGTCCAA 62.388 66.667 0.00 0.00 40.02 3.53
61 62 3.302555 TCTAAAATATAGTGCGTCCGCG 58.697 45.455 7.22 0.00 45.51 6.46
62 63 5.404366 TCATTCTAAAATATAGTGCGTCCGC 59.596 40.000 4.42 4.42 42.35 5.54
63 64 7.359264 CCTTCATTCTAAAATATAGTGCGTCCG 60.359 40.741 0.00 0.00 0.00 4.79
64 65 7.095187 CCCTTCATTCTAAAATATAGTGCGTCC 60.095 40.741 0.00 0.00 0.00 4.79
65 66 7.656137 TCCCTTCATTCTAAAATATAGTGCGTC 59.344 37.037 0.00 0.00 0.00 5.19
66 67 7.506114 TCCCTTCATTCTAAAATATAGTGCGT 58.494 34.615 0.00 0.00 0.00 5.24
67 68 7.657761 ACTCCCTTCATTCTAAAATATAGTGCG 59.342 37.037 0.00 0.00 0.00 5.34
68 69 8.910351 ACTCCCTTCATTCTAAAATATAGTGC 57.090 34.615 0.00 0.00 0.00 4.40
77 78 8.693625 GCTAACTAGTACTCCCTTCATTCTAAA 58.306 37.037 0.00 0.00 0.00 1.85
78 79 7.287235 GGCTAACTAGTACTCCCTTCATTCTAA 59.713 40.741 0.00 0.00 0.00 2.10
79 80 6.776603 GGCTAACTAGTACTCCCTTCATTCTA 59.223 42.308 0.00 0.00 0.00 2.10
80 81 5.599242 GGCTAACTAGTACTCCCTTCATTCT 59.401 44.000 0.00 0.00 0.00 2.40
81 82 5.363005 TGGCTAACTAGTACTCCCTTCATTC 59.637 44.000 0.00 0.00 0.00 2.67
82 83 5.278061 TGGCTAACTAGTACTCCCTTCATT 58.722 41.667 0.00 0.00 0.00 2.57
83 84 4.880164 TGGCTAACTAGTACTCCCTTCAT 58.120 43.478 0.00 0.00 0.00 2.57
84 85 4.326600 TGGCTAACTAGTACTCCCTTCA 57.673 45.455 0.00 0.00 0.00 3.02
85 86 4.465305 TGTTGGCTAACTAGTACTCCCTTC 59.535 45.833 14.47 0.00 37.68 3.46
86 87 4.422984 TGTTGGCTAACTAGTACTCCCTT 58.577 43.478 14.47 0.00 37.68 3.95
87 88 4.057063 TGTTGGCTAACTAGTACTCCCT 57.943 45.455 14.47 0.00 37.68 4.20
88 89 4.222366 AGTTGTTGGCTAACTAGTACTCCC 59.778 45.833 14.47 0.00 36.66 4.30
89 90 5.402997 AGTTGTTGGCTAACTAGTACTCC 57.597 43.478 14.47 0.00 36.66 3.85
90 91 6.689554 AGAAGTTGTTGGCTAACTAGTACTC 58.310 40.000 14.47 5.36 37.39 2.59
91 92 6.667558 AGAAGTTGTTGGCTAACTAGTACT 57.332 37.500 14.47 0.00 37.39 2.73
92 93 6.704937 ACAAGAAGTTGTTGGCTAACTAGTAC 59.295 38.462 16.33 7.13 45.00 2.73
93 94 6.704493 CACAAGAAGTTGTTGGCTAACTAGTA 59.296 38.462 16.33 0.00 45.00 1.82
94 95 5.527582 CACAAGAAGTTGTTGGCTAACTAGT 59.472 40.000 16.33 6.70 45.00 2.57
95 96 5.560953 GCACAAGAAGTTGTTGGCTAACTAG 60.561 44.000 16.33 0.00 45.00 2.57
96 97 4.274950 GCACAAGAAGTTGTTGGCTAACTA 59.725 41.667 16.33 3.53 45.00 2.24
97 98 3.066760 GCACAAGAAGTTGTTGGCTAACT 59.933 43.478 16.33 2.80 45.00 2.24
98 99 3.066760 AGCACAAGAAGTTGTTGGCTAAC 59.933 43.478 19.90 5.91 45.00 2.34
99 100 3.287222 AGCACAAGAAGTTGTTGGCTAA 58.713 40.909 19.90 0.00 45.00 3.09
100 101 2.930950 AGCACAAGAAGTTGTTGGCTA 58.069 42.857 19.90 0.00 45.00 3.93
101 102 1.767759 AGCACAAGAAGTTGTTGGCT 58.232 45.000 16.33 16.89 45.00 4.75
102 103 2.195922 CAAGCACAAGAAGTTGTTGGC 58.804 47.619 16.33 15.22 45.00 4.52
103 104 2.195922 GCAAGCACAAGAAGTTGTTGG 58.804 47.619 16.33 7.16 45.00 3.77
104 105 1.847999 CGCAAGCACAAGAAGTTGTTG 59.152 47.619 11.00 11.00 45.00 3.33
105 106 1.472480 ACGCAAGCACAAGAAGTTGTT 59.528 42.857 0.00 0.00 43.09 2.83
106 107 1.094785 ACGCAAGCACAAGAAGTTGT 58.905 45.000 0.00 0.00 44.84 3.32
107 108 1.063912 TCACGCAAGCACAAGAAGTTG 59.936 47.619 0.00 0.00 45.62 3.16
108 109 1.378531 TCACGCAAGCACAAGAAGTT 58.621 45.000 0.00 0.00 45.62 2.66
109 110 1.331756 CTTCACGCAAGCACAAGAAGT 59.668 47.619 0.00 0.00 45.62 3.01
110 111 1.334419 CCTTCACGCAAGCACAAGAAG 60.334 52.381 0.00 0.00 45.62 2.85
111 112 0.662619 CCTTCACGCAAGCACAAGAA 59.337 50.000 0.00 0.00 45.62 2.52
112 113 0.179059 TCCTTCACGCAAGCACAAGA 60.179 50.000 0.00 0.00 45.62 3.02
113 114 0.236711 CTCCTTCACGCAAGCACAAG 59.763 55.000 0.00 0.00 45.62 3.16
114 115 0.179059 TCTCCTTCACGCAAGCACAA 60.179 50.000 0.00 0.00 45.62 3.33
115 116 0.179059 TTCTCCTTCACGCAAGCACA 60.179 50.000 0.00 0.00 45.62 4.57
116 117 0.944386 TTTCTCCTTCACGCAAGCAC 59.056 50.000 0.00 0.00 45.62 4.40
117 118 1.896220 ATTTCTCCTTCACGCAAGCA 58.104 45.000 0.00 0.00 45.62 3.91
118 119 3.181506 CCTTATTTCTCCTTCACGCAAGC 60.182 47.826 0.00 0.00 45.62 4.01
120 121 4.015872 ACCTTATTTCTCCTTCACGCAA 57.984 40.909 0.00 0.00 0.00 4.85
121 122 3.695830 ACCTTATTTCTCCTTCACGCA 57.304 42.857 0.00 0.00 0.00 5.24
122 123 3.127030 CCAACCTTATTTCTCCTTCACGC 59.873 47.826 0.00 0.00 0.00 5.34
123 124 3.127030 GCCAACCTTATTTCTCCTTCACG 59.873 47.826 0.00 0.00 0.00 4.35
124 125 4.079253 TGCCAACCTTATTTCTCCTTCAC 58.921 43.478 0.00 0.00 0.00 3.18
125 126 4.380843 TGCCAACCTTATTTCTCCTTCA 57.619 40.909 0.00 0.00 0.00 3.02
126 127 6.122964 AGTATGCCAACCTTATTTCTCCTTC 58.877 40.000 0.00 0.00 0.00 3.46
127 128 6.079712 AGTATGCCAACCTTATTTCTCCTT 57.920 37.500 0.00 0.00 0.00 3.36
128 129 5.191722 TGAGTATGCCAACCTTATTTCTCCT 59.808 40.000 0.00 0.00 0.00 3.69
129 130 5.437060 TGAGTATGCCAACCTTATTTCTCC 58.563 41.667 0.00 0.00 0.00 3.71
130 131 7.934120 ACTATGAGTATGCCAACCTTATTTCTC 59.066 37.037 0.00 0.00 0.00 2.87
131 132 7.806180 ACTATGAGTATGCCAACCTTATTTCT 58.194 34.615 0.00 0.00 0.00 2.52
132 133 8.451908 AACTATGAGTATGCCAACCTTATTTC 57.548 34.615 0.00 0.00 0.00 2.17
133 134 7.226720 CGAACTATGAGTATGCCAACCTTATTT 59.773 37.037 0.00 0.00 0.00 1.40
134 135 6.706270 CGAACTATGAGTATGCCAACCTTATT 59.294 38.462 0.00 0.00 0.00 1.40
135 136 6.041637 TCGAACTATGAGTATGCCAACCTTAT 59.958 38.462 0.00 0.00 0.00 1.73
136 137 5.361571 TCGAACTATGAGTATGCCAACCTTA 59.638 40.000 0.00 0.00 0.00 2.69
137 138 4.161565 TCGAACTATGAGTATGCCAACCTT 59.838 41.667 0.00 0.00 0.00 3.50
138 139 3.704566 TCGAACTATGAGTATGCCAACCT 59.295 43.478 0.00 0.00 0.00 3.50
139 140 4.054780 TCGAACTATGAGTATGCCAACC 57.945 45.455 0.00 0.00 0.00 3.77
140 141 6.924060 ACTAATCGAACTATGAGTATGCCAAC 59.076 38.462 0.00 0.00 0.00 3.77
141 142 7.050970 ACTAATCGAACTATGAGTATGCCAA 57.949 36.000 0.00 0.00 0.00 4.52
142 143 6.650427 ACTAATCGAACTATGAGTATGCCA 57.350 37.500 0.00 0.00 0.00 4.92
143 144 9.640963 AAATACTAATCGAACTATGAGTATGCC 57.359 33.333 0.00 0.00 34.84 4.40
160 161 9.793259 TTTCAGTCAAGAGAACCAAATACTAAT 57.207 29.630 0.00 0.00 0.00 1.73
223 224 2.748532 CCGGCTATTTGGTTCGGTTAAA 59.251 45.455 0.00 0.00 36.38 1.52
226 227 0.325602 TCCGGCTATTTGGTTCGGTT 59.674 50.000 0.00 0.00 41.27 4.44
227 228 0.325602 TTCCGGCTATTTGGTTCGGT 59.674 50.000 0.00 0.00 41.27 4.69
228 229 1.602377 GATTCCGGCTATTTGGTTCGG 59.398 52.381 0.00 0.00 41.80 4.30
229 230 1.260561 CGATTCCGGCTATTTGGTTCG 59.739 52.381 0.00 0.00 0.00 3.95
266 576 9.945904 AACCAAACCAAATAGTTTTAACTGAAA 57.054 25.926 5.41 0.00 37.87 2.69
267 577 9.945904 AAACCAAACCAAATAGTTTTAACTGAA 57.054 25.926 5.41 0.00 37.87 3.02
279 589 5.041940 CGAAAACCGAAACCAAACCAAATA 58.958 37.500 0.00 0.00 41.76 1.40
281 591 3.251571 CGAAAACCGAAACCAAACCAAA 58.748 40.909 0.00 0.00 41.76 3.28
298 608 1.475403 TGGGCACTTTCAAACCGAAA 58.525 45.000 0.00 0.00 41.40 3.46
322 632 3.604629 AGACACGTCTCCCATCCG 58.395 61.111 0.00 0.00 34.17 4.18
347 661 0.595095 CAAACAGAACAGCTCCTGCC 59.405 55.000 7.09 0.00 40.80 4.85
348 662 1.265365 GACAAACAGAACAGCTCCTGC 59.735 52.381 7.09 0.00 34.37 4.85
349 663 1.528586 CGACAAACAGAACAGCTCCTG 59.471 52.381 5.91 5.91 37.52 3.86
353 667 0.535102 CCCCGACAAACAGAACAGCT 60.535 55.000 0.00 0.00 0.00 4.24
355 669 1.961793 TTCCCCGACAAACAGAACAG 58.038 50.000 0.00 0.00 0.00 3.16
357 671 3.379057 TCTTTTTCCCCGACAAACAGAAC 59.621 43.478 0.00 0.00 0.00 3.01
358 672 3.622630 TCTTTTTCCCCGACAAACAGAA 58.377 40.909 0.00 0.00 0.00 3.02
360 674 2.949644 ACTCTTTTTCCCCGACAAACAG 59.050 45.455 0.00 0.00 0.00 3.16
361 675 2.685897 CACTCTTTTTCCCCGACAAACA 59.314 45.455 0.00 0.00 0.00 2.83
362 676 2.946990 TCACTCTTTTTCCCCGACAAAC 59.053 45.455 0.00 0.00 0.00 2.93
418 732 2.913060 CCGATCCGTCTCCTCCCC 60.913 72.222 0.00 0.00 0.00 4.81
549 863 4.081185 TGATGCTTCGGCCGAGCA 62.081 61.111 36.75 36.75 43.04 4.26
590 915 2.113986 CCATTCGGGGGATGGAGC 59.886 66.667 0.00 0.00 45.59 4.70
596 921 1.004277 CTTTGTCTTCCATTCGGGGGA 59.996 52.381 0.00 0.00 37.22 4.81
607 932 2.147150 GCAGGACACTCCTTTGTCTTC 58.853 52.381 3.44 0.00 46.91 2.87
668 993 4.484258 AGCTTCGTCTCGGCTCGC 62.484 66.667 0.00 0.00 0.00 5.03
725 1050 2.889988 CCGGCACATTCGCATCGA 60.890 61.111 0.00 0.00 0.00 3.59
881 1207 1.078497 CGGCAGGGTTAGTCATGCA 60.078 57.895 4.01 0.00 40.46 3.96
888 1228 1.091771 CATCAGCACGGCAGGGTTAG 61.092 60.000 0.00 0.00 0.00 2.34
941 1281 2.030805 GCACGAAACAGCCAAAGATCTT 60.031 45.455 0.88 0.88 0.00 2.40
964 1304 0.035630 CTTCCCCCTGCTCTGTTCTG 60.036 60.000 0.00 0.00 0.00 3.02
1005 1345 2.260844 TCTTGTTCTTGAGCCCACTG 57.739 50.000 0.00 0.00 0.00 3.66
1006 1346 2.439507 TCTTCTTGTTCTTGAGCCCACT 59.560 45.455 0.00 0.00 0.00 4.00
1068 1408 2.436109 GCCAGGAAGAGGTTGCCA 59.564 61.111 0.00 0.00 0.00 4.92
1250 1593 3.181503 CCGAACAGCAATCCTTTCATGAG 60.182 47.826 0.00 0.00 0.00 2.90
1273 1619 1.066587 CTTCGCCGATCTGTCCTCC 59.933 63.158 0.00 0.00 0.00 4.30
1305 1651 2.359107 GCACCTGCTGCTGCACTA 60.359 61.111 14.93 0.00 45.31 2.74
1312 1658 1.654954 CTGGAAGATGCACCTGCTGC 61.655 60.000 0.00 0.00 41.42 5.25
1374 1720 2.753043 TAGTCCCTGTCGTCGCCC 60.753 66.667 0.00 0.00 0.00 6.13
1383 1729 1.343069 GCCTCCTATGGTAGTCCCTG 58.657 60.000 0.00 0.00 0.00 4.45
1448 1794 3.001736 GCAGAACCGATGCTCTATGTTTC 59.998 47.826 0.00 0.00 40.59 2.78
1531 1877 8.434589 AATGTCAAATGATTCTTCCCCTTTAA 57.565 30.769 0.00 0.00 0.00 1.52
1532 1878 8.313292 CAAATGTCAAATGATTCTTCCCCTTTA 58.687 33.333 0.00 0.00 0.00 1.85
1533 1879 6.940430 AATGTCAAATGATTCTTCCCCTTT 57.060 33.333 0.00 0.00 0.00 3.11
1713 2060 1.344438 TGTCCAGCGAGTTGTCTCAAT 59.656 47.619 0.00 0.00 40.44 2.57
1760 2107 8.534333 AAATCAATGTGTAGTACTGTACTGTG 57.466 34.615 26.45 15.21 39.81 3.66
1789 2136 1.235724 TCGATCGCATATGGACGAGT 58.764 50.000 11.09 0.00 42.31 4.18
1790 2137 2.445316 GATCGATCGCATATGGACGAG 58.555 52.381 11.09 0.00 42.31 4.18
1791 2138 1.202031 CGATCGATCGCATATGGACGA 60.202 52.381 32.34 6.37 43.84 4.20
1792 2139 1.183511 CGATCGATCGCATATGGACG 58.816 55.000 32.34 8.10 43.84 4.79
1850 2200 2.143008 CTCAGATGAGCTAGCAGCAG 57.857 55.000 18.83 3.50 45.56 4.24
1953 2303 4.506654 GCATTTGATGATGTTGCATCCTTC 59.493 41.667 6.65 4.94 43.10 3.46
2002 2352 0.037303 CCTGCATGAACTGGTGGTCT 59.963 55.000 0.00 0.00 0.00 3.85
2113 2466 0.768221 AGGCTCTTCTGGGGACACAA 60.768 55.000 0.00 0.00 35.60 3.33
2218 2571 1.480954 ACAATAGTCAGCAGGTACCCG 59.519 52.381 8.74 0.00 0.00 5.28
2221 2574 5.941948 AAAACACAATAGTCAGCAGGTAC 57.058 39.130 0.00 0.00 0.00 3.34
2223 2576 4.455877 GCTAAAACACAATAGTCAGCAGGT 59.544 41.667 0.00 0.00 0.00 4.00
2241 2596 4.445735 GGCATCAGGGGTAATACAGCTAAA 60.446 45.833 0.00 0.00 0.00 1.85
2249 2604 1.914272 TTGGGGCATCAGGGGTAATA 58.086 50.000 0.00 0.00 0.00 0.98
2251 2606 0.787084 TTTTGGGGCATCAGGGGTAA 59.213 50.000 0.00 0.00 0.00 2.85
2297 2652 6.317789 TGTTTACCAAAGAGCTTGAAGATG 57.682 37.500 0.00 0.00 37.17 2.90
2298 2653 6.566197 CTGTTTACCAAAGAGCTTGAAGAT 57.434 37.500 0.00 0.00 37.17 2.40
2384 2739 4.499183 AGATAAAGTTGTCAAGAGAGGCG 58.501 43.478 0.00 0.00 0.00 5.52
2484 2842 6.005066 TCCATGTCACTTGGATAATGTGAT 57.995 37.500 8.36 0.00 41.78 3.06
2508 2866 2.780010 ACAACCAGGCCTGATATAGCTT 59.220 45.455 34.91 10.46 0.00 3.74
2613 2973 9.815306 AGTAACCATAGAGAAGAGATATGCTTA 57.185 33.333 0.00 0.00 0.00 3.09
2615 2975 9.461312 CTAGTAACCATAGAGAAGAGATATGCT 57.539 37.037 0.00 0.00 0.00 3.79
2670 3030 7.337480 TCCAAGGTTTGTAGTTTAGGTTTTC 57.663 36.000 0.00 0.00 0.00 2.29
2685 3045 7.001073 GGATTATGCTTCTCTATCCAAGGTTT 58.999 38.462 0.00 0.00 35.82 3.27
2802 3162 1.523758 CTTTCTCCCAGAAACCACGG 58.476 55.000 0.00 0.00 39.13 4.94
2804 3164 2.951229 TCCTTTCTCCCAGAAACCAC 57.049 50.000 0.00 0.00 39.13 4.16
2819 3179 3.117888 CACCCTAGCATACAACCATCCTT 60.118 47.826 0.00 0.00 0.00 3.36
2827 3187 1.209504 GTCCTGCACCCTAGCATACAA 59.790 52.381 0.00 0.00 44.68 2.41
2849 3209 2.756760 CCATTGCAGCTTAATGTCAGGT 59.243 45.455 15.61 0.00 34.51 4.00
2913 3277 6.372185 TGGTTGCACACGTACATAAAAATAC 58.628 36.000 0.00 0.00 0.00 1.89
2923 3287 1.277440 CCGTTGGTTGCACACGTAC 59.723 57.895 0.00 0.00 0.00 3.67
2927 3291 1.299089 GAAGCCGTTGGTTGCACAC 60.299 57.895 0.00 0.00 30.94 3.82
2929 3293 0.887387 TAGGAAGCCGTTGGTTGCAC 60.887 55.000 0.00 0.00 42.09 4.57
2930 3294 0.037590 ATAGGAAGCCGTTGGTTGCA 59.962 50.000 0.00 0.00 42.09 4.08
2940 3304 3.056821 GGAAACCACAAACATAGGAAGCC 60.057 47.826 0.00 0.00 0.00 4.35
2964 3328 2.220653 TAAGCCTGCCTGCAAAGAAT 57.779 45.000 0.00 0.00 0.00 2.40
3015 3379 3.305361 CACACAGTATCTGATGCTTGTCG 59.695 47.826 5.46 0.00 35.18 4.35
3045 3409 2.187707 GAATTACAAGCAGCCGCAATG 58.812 47.619 0.00 0.00 42.27 2.82
3057 3421 5.758296 AGAGAAGTTTGCTGTCGAATTACAA 59.242 36.000 0.00 0.00 0.00 2.41
3059 3423 5.177696 ACAGAGAAGTTTGCTGTCGAATTAC 59.822 40.000 5.92 0.00 38.41 1.89
3069 3433 2.549778 GCCTCTCACAGAGAAGTTTGCT 60.550 50.000 1.88 0.00 45.07 3.91
3081 3445 4.222810 TGAGCTATGTTAAAGCCTCTCACA 59.777 41.667 0.00 0.00 41.02 3.58
3109 3473 1.435577 CGTGGTACCTACTTTGTGGC 58.564 55.000 14.36 0.00 0.00 5.01
3292 3656 3.222603 GGAAGGAGCAAGAAAAGGTCAA 58.777 45.455 0.00 0.00 35.30 3.18
3317 3681 2.136863 TGAACCCCCTTCCACTTGTAA 58.863 47.619 0.00 0.00 0.00 2.41
3352 3716 9.277783 CAAAGAATGTAAGAGAGAAAAGGAGAA 57.722 33.333 0.00 0.00 0.00 2.87
3353 3717 8.651389 TCAAAGAATGTAAGAGAGAAAAGGAGA 58.349 33.333 0.00 0.00 0.00 3.71
3356 3720 8.614469 ACTCAAAGAATGTAAGAGAGAAAAGG 57.386 34.615 0.00 0.00 0.00 3.11
3357 3721 9.875675 CAACTCAAAGAATGTAAGAGAGAAAAG 57.124 33.333 0.00 0.00 0.00 2.27
3358 3722 9.396022 ACAACTCAAAGAATGTAAGAGAGAAAA 57.604 29.630 0.00 0.00 0.00 2.29
3359 3723 8.964476 ACAACTCAAAGAATGTAAGAGAGAAA 57.036 30.769 0.00 0.00 0.00 2.52
3361 3725 8.964476 AAACAACTCAAAGAATGTAAGAGAGA 57.036 30.769 0.00 0.00 0.00 3.10
3362 3726 9.050601 AGAAACAACTCAAAGAATGTAAGAGAG 57.949 33.333 0.00 0.00 0.00 3.20
3363 3727 8.964476 AGAAACAACTCAAAGAATGTAAGAGA 57.036 30.769 0.00 0.00 0.00 3.10
3364 3728 9.050601 AGAGAAACAACTCAAAGAATGTAAGAG 57.949 33.333 0.00 0.00 39.14 2.85
3365 3729 8.964476 AGAGAAACAACTCAAAGAATGTAAGA 57.036 30.769 0.00 0.00 39.14 2.10
3378 3742 9.606631 ATGAGGATGTATAAAGAGAAACAACTC 57.393 33.333 0.00 0.00 37.19 3.01
3474 3838 0.040425 CGCGACAACAAAGGGAAAGG 60.040 55.000 0.00 0.00 0.00 3.11
3478 3842 0.882927 CTTCCGCGACAACAAAGGGA 60.883 55.000 8.23 0.00 0.00 4.20
3493 3857 7.275341 CGAATCTCACAGCATATAGATTCTTCC 59.725 40.741 20.27 5.14 46.30 3.46
3508 3872 3.620374 CCTCCAACATTCGAATCTCACAG 59.380 47.826 7.92 2.10 0.00 3.66
3518 3882 3.664107 TCAGTTTCTCCTCCAACATTCG 58.336 45.455 0.00 0.00 0.00 3.34
3532 3896 9.585099 TCACCAAATGCAATTATATTCAGTTTC 57.415 29.630 0.00 0.00 33.67 2.78
3566 3939 1.748591 GCGGGAAGCCATCAGATCTTT 60.749 52.381 0.00 0.00 40.81 2.52
3583 3956 2.985282 TTCAAGGCTTGGCTGCGG 60.985 61.111 25.92 0.00 0.00 5.69
3598 3971 5.009410 CCATCCTATTTCATGCAGGAACTTC 59.991 44.000 14.30 0.00 41.68 3.01
3604 3977 2.872732 AGCCATCCTATTTCATGCAGG 58.127 47.619 0.00 0.00 0.00 4.85
3607 3980 4.581824 TGAAGAAGCCATCCTATTTCATGC 59.418 41.667 0.00 0.00 0.00 4.06
3619 3992 1.076024 TGGCTCCTTTGAAGAAGCCAT 59.924 47.619 18.27 0.00 45.99 4.40
3628 4001 0.249868 CTCGTGTGTGGCTCCTTTGA 60.250 55.000 0.00 0.00 0.00 2.69
3658 4031 3.500680 GTCGAAATTGTTGTGGAGCCTTA 59.499 43.478 0.00 0.00 0.00 2.69
3667 4040 4.278858 CAACACGATGTCGAAATTGTTGT 58.721 39.130 18.90 12.44 42.45 3.32
3674 4047 1.222300 CCCACAACACGATGTCGAAA 58.778 50.000 9.67 0.00 43.02 3.46
3675 4048 0.105224 ACCCACAACACGATGTCGAA 59.895 50.000 9.67 0.00 43.02 3.71
3676 4049 0.105224 AACCCACAACACGATGTCGA 59.895 50.000 9.67 0.00 43.02 4.20
3677 4050 0.941542 AAACCCACAACACGATGTCG 59.058 50.000 0.11 0.11 46.33 4.35
3678 4051 2.287368 GGAAAACCCACAACACGATGTC 60.287 50.000 0.00 0.00 34.14 3.06
3679 4052 1.679153 GGAAAACCCACAACACGATGT 59.321 47.619 0.00 0.00 34.14 3.06
3684 4057 1.111277 AGCAGGAAAACCCACAACAC 58.889 50.000 0.00 0.00 37.41 3.32
3687 4060 0.685785 TGCAGCAGGAAAACCCACAA 60.686 50.000 0.00 0.00 37.41 3.33
3688 4061 0.685785 TTGCAGCAGGAAAACCCACA 60.686 50.000 0.00 0.00 37.41 4.17
3694 4067 5.105635 CCATCTAAATCTTGCAGCAGGAAAA 60.106 40.000 11.82 0.00 0.00 2.29
3698 4071 2.034305 GCCATCTAAATCTTGCAGCAGG 59.966 50.000 0.00 0.00 0.00 4.85
3715 4088 0.323178 CTGCAAAGGACAGGAGCCAT 60.323 55.000 0.00 0.00 0.00 4.40
3733 4106 2.881403 GCCACACCATTCCTGATCAACT 60.881 50.000 0.00 0.00 0.00 3.16
3751 4124 1.358725 GCAGCATCTTTACGACGCCA 61.359 55.000 0.00 0.00 29.26 5.69
3757 4130 1.394917 GTGTCCAGCAGCATCTTTACG 59.605 52.381 0.00 0.00 0.00 3.18
3881 4254 5.339008 TTCGTTGTGTATCTCAATAGGCT 57.661 39.130 0.00 0.00 0.00 4.58
4014 4387 1.339711 CAAAACGGCAGCAGCATTAC 58.660 50.000 2.65 0.00 44.61 1.89
4139 4513 4.335400 TCTGATTTGCACACACACTAGA 57.665 40.909 0.00 0.00 0.00 2.43
4343 4822 1.043673 ATCCTCTGGAGTGTACCCGC 61.044 60.000 0.00 0.00 34.05 6.13
4371 4850 2.584391 GGACGTGTGCCCTCTCCTT 61.584 63.158 0.00 0.00 0.00 3.36
4380 4859 0.530744 TCTGGATGTAGGACGTGTGC 59.469 55.000 0.00 0.00 0.00 4.57
4434 4913 0.539438 TGGAAACAGACACATGGGCC 60.539 55.000 0.00 0.00 35.01 5.80
4620 5099 1.883084 GACCAAGGATAGCACCGCG 60.883 63.158 0.00 0.00 34.73 6.46
4883 5362 9.686683 AAAGGTTGAATATGCAATAGAACTACT 57.313 29.630 0.00 0.00 28.50 2.57
4933 5421 1.308998 CGGGCTCTTGTGACTGTTTT 58.691 50.000 0.00 0.00 0.00 2.43
4957 5445 0.254462 TGCCCGCTGACCAAATATCA 59.746 50.000 0.00 0.00 0.00 2.15
4992 5544 1.075601 TCTCAGAAAATGGCCACCCT 58.924 50.000 8.16 0.00 0.00 4.34
4996 5548 2.108075 TCCTTGTCTCAGAAAATGGCCA 59.892 45.455 8.56 8.56 0.00 5.36
5058 5619 2.184385 GACGATTATGGACACGTCGT 57.816 50.000 0.00 0.00 46.78 4.34
5065 5626 0.319641 GGAGGCCGACGATTATGGAC 60.320 60.000 0.00 0.00 0.00 4.02
5114 5676 1.596727 GCTAGCTCTGCAAGGAATTCG 59.403 52.381 7.70 0.00 0.00 3.34
5123 5685 5.815233 ATTAATTCCTAGCTAGCTCTGCA 57.185 39.130 23.26 4.21 0.00 4.41
5126 5688 8.654997 TGATCAAATTAATTCCTAGCTAGCTCT 58.345 33.333 23.26 0.00 0.00 4.09
5127 5689 8.839310 TGATCAAATTAATTCCTAGCTAGCTC 57.161 34.615 23.26 0.80 0.00 4.09
5133 5695 6.583806 CGCCATTGATCAAATTAATTCCTAGC 59.416 38.462 13.09 0.00 0.00 3.42
5141 5703 9.868277 AATTAAAGTCGCCATTGATCAAATTAA 57.132 25.926 13.09 8.33 0.00 1.40
5142 5704 9.868277 AAATTAAAGTCGCCATTGATCAAATTA 57.132 25.926 13.09 0.00 0.00 1.40
5144 5706 8.034215 TCAAATTAAAGTCGCCATTGATCAAAT 58.966 29.630 13.09 0.00 0.00 2.32
5146 5708 6.918626 TCAAATTAAAGTCGCCATTGATCAA 58.081 32.000 11.26 11.26 0.00 2.57
5157 5740 7.721286 AGCCTCATAGATCAAATTAAAGTCG 57.279 36.000 0.00 0.00 0.00 4.18
5191 5774 5.169295 TCCGTTTTTAAAGTTTGTGGTTGG 58.831 37.500 0.00 0.00 0.00 3.77
5192 5776 6.895607 ATCCGTTTTTAAAGTTTGTGGTTG 57.104 33.333 0.00 0.00 0.00 3.77
5213 5797 6.017109 TCGCAGCTCTAAATTTTCCCATAATC 60.017 38.462 0.00 0.00 0.00 1.75
5222 5806 3.932710 TGTCGATCGCAGCTCTAAATTTT 59.067 39.130 11.09 0.00 0.00 1.82
5244 5828 0.178981 ATTTCATGCAGCCCCGCTAT 60.179 50.000 0.00 0.00 36.40 2.97
5257 5841 5.943349 TCCATCCTTGCATTTGATTTCAT 57.057 34.783 0.00 0.00 0.00 2.57
5274 5858 3.252974 ACTCCACGTGAATCTTCCATC 57.747 47.619 19.30 0.00 0.00 3.51
5277 5861 2.921754 CGTTACTCCACGTGAATCTTCC 59.078 50.000 19.30 0.00 35.34 3.46
5304 5888 3.230134 TGCTAACAAGCATGAAACCCTT 58.770 40.909 0.00 0.00 40.23 3.95
5478 6065 0.467290 GTGAAAGTGGGGGAAGCACA 60.467 55.000 0.00 0.00 0.00 4.57
5494 6081 3.084039 GCCTTGATGACCATCTTTGTGA 58.916 45.455 10.87 0.00 38.60 3.58
5498 6085 3.028850 CCATGCCTTGATGACCATCTTT 58.971 45.455 10.87 0.00 38.60 2.52
5503 6090 0.251698 TTGCCATGCCTTGATGACCA 60.252 50.000 0.00 0.00 0.00 4.02
5529 6116 1.518903 GAAGGTTGAGGTGTGCTGCC 61.519 60.000 0.00 0.00 0.00 4.85
5538 6126 2.758770 TTCCGACGCGAAGGTTGAGG 62.759 60.000 15.93 3.84 0.00 3.86
5541 6129 0.736325 ATCTTCCGACGCGAAGGTTG 60.736 55.000 15.93 12.25 39.82 3.77
5542 6130 0.037605 AATCTTCCGACGCGAAGGTT 60.038 50.000 15.93 17.14 38.18 3.50
5543 6131 0.813184 TAATCTTCCGACGCGAAGGT 59.187 50.000 15.93 13.35 39.82 3.50
5586 6176 6.119536 AGACCTCATTTGTAATGCGGAATTA 58.880 36.000 13.66 0.00 0.00 1.40
5593 6183 5.098211 GCAAGAAGACCTCATTTGTAATGC 58.902 41.667 0.00 0.00 0.00 3.56
5628 6218 0.322008 AGCTGCCTACTTTCCTGCAC 60.322 55.000 0.00 0.00 0.00 4.57
5656 6246 5.780793 AGAAGCCTTCTTAGGTTGAACTCTA 59.219 40.000 0.00 0.00 44.00 2.43
5657 6247 4.595350 AGAAGCCTTCTTAGGTTGAACTCT 59.405 41.667 0.00 0.00 44.00 3.24
5685 6275 0.249073 GCGAGCCTGATTTCGAGCTA 60.249 55.000 0.00 0.00 39.06 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.