Multiple sequence alignment - TraesCS7A01G207700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G207700 chr7A 100.000 4774 0 0 1 4774 170542287 170547060 0.000000e+00 8817.0
1 TraesCS7A01G207700 chr7A 96.364 275 9 1 4500 4774 319336628 319336355 7.290000e-123 451.0
2 TraesCS7A01G207700 chr7A 96.014 276 10 1 4499 4774 340047972 340047698 9.420000e-122 448.0
3 TraesCS7A01G207700 chr7A 97.222 36 1 0 41 76 641971114 641971079 1.430000e-05 62.1
4 TraesCS7A01G207700 chr7B 94.439 3776 173 17 746 4497 133361073 133364835 0.000000e+00 5775.0
5 TraesCS7A01G207700 chr7B 91.865 504 37 4 53 554 133360117 133360618 0.000000e+00 701.0
6 TraesCS7A01G207700 chr7B 94.118 102 4 1 559 658 133360662 133360763 2.300000e-33 154.0
7 TraesCS7A01G207700 chr7D 95.387 1951 66 15 728 2664 168245273 168247213 0.000000e+00 3083.0
8 TraesCS7A01G207700 chr7D 89.099 1431 116 15 2673 4067 168247318 168248744 0.000000e+00 1742.0
9 TraesCS7A01G207700 chr7D 87.382 317 34 3 75 385 186430465 186430781 4.540000e-95 359.0
10 TraesCS7A01G207700 chr7D 92.157 102 6 1 559 658 168245033 168245134 4.980000e-30 143.0
11 TraesCS7A01G207700 chr7D 95.455 88 4 0 467 554 168244903 168244990 1.790000e-29 141.0
12 TraesCS7A01G207700 chr3B 84.540 3079 350 70 892 3903 20538841 20541860 0.000000e+00 2933.0
13 TraesCS7A01G207700 chr3B 92.308 65 4 1 1 64 133480947 133481011 1.830000e-14 91.6
14 TraesCS7A01G207700 chr3B 92.982 57 2 1 1 55 168597541 168597597 1.100000e-11 82.4
15 TraesCS7A01G207700 chr3D 88.417 1623 131 29 971 2556 14078635 14077033 0.000000e+00 1903.0
16 TraesCS7A01G207700 chr3D 83.450 1281 186 17 2660 3915 14076796 14075517 0.000000e+00 1168.0
17 TraesCS7A01G207700 chr3D 88.048 251 28 2 134 382 521321230 521320980 3.610000e-76 296.0
18 TraesCS7A01G207700 chr3D 88.158 76 4 4 1 74 340339903 340339975 8.510000e-13 86.1
19 TraesCS7A01G207700 chr3D 91.228 57 3 2 1 55 434183928 434183984 5.120000e-10 76.8
20 TraesCS7A01G207700 chr5A 96.057 279 9 2 4496 4774 396421213 396421489 2.030000e-123 453.0
21 TraesCS7A01G207700 chr5A 95.699 279 10 2 4497 4774 87902338 87902615 9.420000e-122 448.0
22 TraesCS7A01G207700 chr5A 89.623 318 26 4 75 385 229473541 229473858 9.630000e-107 398.0
23 TraesCS7A01G207700 chr3A 96.364 275 9 1 4500 4774 417830940 417830667 7.290000e-123 451.0
24 TraesCS7A01G207700 chr3A 89.113 248 25 2 143 388 203959711 203959464 1.670000e-79 307.0
25 TraesCS7A01G207700 chr3A 77.835 194 21 15 4324 4499 487191006 487191195 3.040000e-17 100.0
26 TraesCS7A01G207700 chr3A 77.778 198 18 20 4324 4499 487264260 487264453 1.090000e-16 99.0
27 TraesCS7A01G207700 chr3A 92.982 57 2 2 1 55 611197380 611197324 1.100000e-11 82.4
28 TraesCS7A01G207700 chr2A 96.364 275 9 1 4500 4774 125798449 125798722 7.290000e-123 451.0
29 TraesCS7A01G207700 chr1D 96.364 275 9 1 4500 4774 408597838 408597565 7.290000e-123 451.0
30 TraesCS7A01G207700 chr1D 96.029 277 10 1 4498 4774 212423871 212423596 2.620000e-122 449.0
31 TraesCS7A01G207700 chr1D 83.732 209 28 5 4282 4485 299924604 299924811 4.880000e-45 193.0
32 TraesCS7A01G207700 chr5D 95.699 279 9 3 4497 4774 483376771 483377047 3.390000e-121 446.0
33 TraesCS7A01G207700 chr2B 89.969 319 26 3 73 385 231313530 231313848 1.600000e-109 407.0
34 TraesCS7A01G207700 chr2B 94.737 57 1 2 1 55 655588951 655589007 2.370000e-13 87.9
35 TraesCS7A01G207700 chr4B 88.509 322 31 3 75 390 270402713 270402392 7.490000e-103 385.0
36 TraesCS7A01G207700 chr1B 88.162 321 32 5 75 390 170924604 170924923 1.250000e-100 377.0
37 TraesCS7A01G207700 chr4D 86.139 303 36 3 71 367 3218714 3218412 5.960000e-84 322.0
38 TraesCS7A01G207700 chr6A 79.213 178 23 10 4291 4456 216020200 216020375 1.400000e-20 111.0
39 TraesCS7A01G207700 chr6D 94.203 69 1 3 1 66 34649681 34649613 8.450000e-18 102.0
40 TraesCS7A01G207700 chr6B 93.333 60 2 2 1 58 455211883 455211824 2.370000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G207700 chr7A 170542287 170547060 4773 False 8817.00 8817 100.0000 1 4774 1 chr7A.!!$F1 4773
1 TraesCS7A01G207700 chr7B 133360117 133364835 4718 False 2210.00 5775 93.4740 53 4497 3 chr7B.!!$F1 4444
2 TraesCS7A01G207700 chr7D 168244903 168248744 3841 False 1277.25 3083 93.0245 467 4067 4 chr7D.!!$F2 3600
3 TraesCS7A01G207700 chr3B 20538841 20541860 3019 False 2933.00 2933 84.5400 892 3903 1 chr3B.!!$F1 3011
4 TraesCS7A01G207700 chr3D 14075517 14078635 3118 True 1535.50 1903 85.9335 971 3915 2 chr3D.!!$R2 2944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 410 0.031721 AGCCTAACTATACGCACGGC 59.968 55.0 0.00 0.0 36.36 5.68 F
993 1294 0.257905 TTCTCCTCCTTCCCGATCGA 59.742 55.0 18.66 0.0 0.00 3.59 F
2199 2535 0.389426 GGCTCGCCTTCGAAAGTACA 60.389 55.0 0.00 0.0 44.98 2.90 F
3226 3867 0.753262 ATGTCTACCGCTCCATGACC 59.247 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2481 1.136147 GTGTACTCGGCGATCACGT 59.864 57.895 11.27 7.48 41.98 4.49 R
2987 3628 0.582005 GACTGCAAACTCACACGGAC 59.418 55.000 0.00 0.00 0.00 4.79 R
3446 4097 0.108377 ATGTCAGCGGCGTCACATTA 60.108 50.000 9.37 0.00 0.00 1.90 R
4736 5422 0.036010 CCCGTGAAGCTCTGTTGGAT 60.036 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.846943 AAATTTTAAGATAAGCCCAAAACCAG 57.153 30.769 0.00 0.00 0.00 4.00
42 43 7.790782 ATTTTAAGATAAGCCCAAAACCAGA 57.209 32.000 0.00 0.00 0.00 3.86
43 44 7.604657 TTTTAAGATAAGCCCAAAACCAGAA 57.395 32.000 0.00 0.00 0.00 3.02
44 45 7.604657 TTTAAGATAAGCCCAAAACCAGAAA 57.395 32.000 0.00 0.00 0.00 2.52
45 46 5.728637 AAGATAAGCCCAAAACCAGAAAG 57.271 39.130 0.00 0.00 0.00 2.62
46 47 4.089361 AGATAAGCCCAAAACCAGAAAGG 58.911 43.478 0.00 0.00 45.67 3.11
47 48 2.470057 AAGCCCAAAACCAGAAAGGA 57.530 45.000 0.00 0.00 41.22 3.36
48 49 2.001076 AGCCCAAAACCAGAAAGGAG 57.999 50.000 0.00 0.00 41.22 3.69
49 50 0.969149 GCCCAAAACCAGAAAGGAGG 59.031 55.000 0.00 0.00 41.22 4.30
50 51 1.632589 CCCAAAACCAGAAAGGAGGG 58.367 55.000 0.00 0.00 41.22 4.30
51 52 1.146982 CCCAAAACCAGAAAGGAGGGA 59.853 52.381 0.00 0.00 41.22 4.20
85 86 0.911769 CCACTATGAGGCCACTTCCA 59.088 55.000 5.01 0.00 0.00 3.53
89 90 2.578021 ACTATGAGGCCACTTCCAATGT 59.422 45.455 5.01 0.00 0.00 2.71
90 91 3.780294 ACTATGAGGCCACTTCCAATGTA 59.220 43.478 5.01 0.00 0.00 2.29
145 146 7.481275 AAAAAGTTTAGCAATGTCCACAATG 57.519 32.000 0.00 0.00 0.00 2.82
181 182 1.635487 TGTTGATGCTAAGCTCCCCTT 59.365 47.619 0.00 0.00 37.57 3.95
223 224 9.762381 AACTAAACTATTCCATTTATTGGTGGA 57.238 29.630 0.00 0.00 46.52 4.02
224 225 9.936329 ACTAAACTATTCCATTTATTGGTGGAT 57.064 29.630 0.00 0.00 46.52 3.41
277 279 1.340889 TGTGCTTGCATTGGTTCTTCC 59.659 47.619 0.00 0.00 0.00 3.46
285 287 2.162681 CATTGGTTCTTCCTGGGTCAC 58.837 52.381 0.00 0.00 37.07 3.67
287 289 0.696143 TGGTTCTTCCTGGGTCACCA 60.696 55.000 0.00 0.00 46.94 4.17
297 299 2.270352 TGGGTCACCAAACTCACATC 57.730 50.000 0.00 0.00 45.87 3.06
298 300 1.156736 GGGTCACCAAACTCACATCG 58.843 55.000 0.00 0.00 36.50 3.84
313 315 4.945246 TCACATCGCTCCTCTTTATTACC 58.055 43.478 0.00 0.00 0.00 2.85
314 316 4.649674 TCACATCGCTCCTCTTTATTACCT 59.350 41.667 0.00 0.00 0.00 3.08
315 317 5.128827 TCACATCGCTCCTCTTTATTACCTT 59.871 40.000 0.00 0.00 0.00 3.50
316 318 5.235186 CACATCGCTCCTCTTTATTACCTTG 59.765 44.000 0.00 0.00 0.00 3.61
329 331 7.615365 TCTTTATTACCTTGCCACATCAGATTT 59.385 33.333 0.00 0.00 0.00 2.17
332 334 4.261578 ACCTTGCCACATCAGATTTTTG 57.738 40.909 0.00 0.00 0.00 2.44
352 354 1.762957 GGCCTACATGACAGCCTTAGA 59.237 52.381 14.62 0.00 42.34 2.10
367 369 8.023021 ACAGCCTTAGAATATGTACAAGATGA 57.977 34.615 0.00 0.00 0.00 2.92
371 373 7.442364 GCCTTAGAATATGTACAAGATGAAGCA 59.558 37.037 0.00 0.00 0.00 3.91
404 406 3.819337 CCTGAGTAGCCTAACTATACGCA 59.181 47.826 0.00 0.00 32.15 5.24
408 410 0.031721 AGCCTAACTATACGCACGGC 59.968 55.000 0.00 0.00 36.36 5.68
413 415 1.105457 AACTATACGCACGGCTACCA 58.895 50.000 0.00 0.00 0.00 3.25
414 416 0.666913 ACTATACGCACGGCTACCAG 59.333 55.000 0.00 0.00 0.00 4.00
432 434 2.513738 CCAGGTCCATTTTAGGGATCCA 59.486 50.000 15.23 0.00 36.11 3.41
465 467 3.248602 GCGCTCATAAACTATCTTGGTGG 59.751 47.826 0.00 0.00 0.00 4.61
557 559 1.937899 GTGGTTCACACGTATATGGGC 59.062 52.381 0.00 0.00 40.85 5.36
561 602 1.069090 CACACGTATATGGGCGCCT 59.931 57.895 28.56 10.45 0.00 5.52
631 672 7.389479 GTTCGTCCTTTAGCTTTATCGTTTAG 58.611 38.462 0.00 0.00 0.00 1.85
650 691 9.997482 TCGTTTAGTTTAATTTAATCCATCAGC 57.003 29.630 0.00 0.00 0.00 4.26
651 692 9.781834 CGTTTAGTTTAATTTAATCCATCAGCA 57.218 29.630 0.00 0.00 0.00 4.41
725 767 2.978156 TCCTTTGGATGGCCCATATC 57.022 50.000 0.00 0.00 46.10 1.63
726 768 1.428912 TCCTTTGGATGGCCCATATCC 59.571 52.381 12.71 12.71 46.10 2.59
734 1018 6.672946 TGGATGGCCCATATCCTATAATTT 57.327 37.500 18.74 0.00 43.63 1.82
742 1026 8.215736 GGCCCATATCCTATAATTTAATACGGT 58.784 37.037 0.00 0.00 0.00 4.83
922 1211 2.266055 CAACTCCGGCCTCCTCAC 59.734 66.667 0.00 0.00 0.00 3.51
923 1212 2.203788 AACTCCGGCCTCCTCACA 60.204 61.111 0.00 0.00 0.00 3.58
924 1213 1.841556 AACTCCGGCCTCCTCACAA 60.842 57.895 0.00 0.00 0.00 3.33
990 1291 2.324541 CATCTTCTCCTCCTTCCCGAT 58.675 52.381 0.00 0.00 0.00 4.18
991 1292 2.074729 TCTTCTCCTCCTTCCCGATC 57.925 55.000 0.00 0.00 0.00 3.69
992 1293 0.671251 CTTCTCCTCCTTCCCGATCG 59.329 60.000 8.51 8.51 0.00 3.69
993 1294 0.257905 TTCTCCTCCTTCCCGATCGA 59.742 55.000 18.66 0.00 0.00 3.59
1999 2335 1.614241 CCTTCCACCCGGACTTCGAT 61.614 60.000 0.73 0.00 42.67 3.59
2145 2481 1.538876 AGCCCTGCCAGTACCAGAA 60.539 57.895 0.00 0.00 32.03 3.02
2194 2530 3.642778 CTCCGGCTCGCCTTCGAAA 62.643 63.158 6.35 0.00 44.98 3.46
2199 2535 0.389426 GGCTCGCCTTCGAAAGTACA 60.389 55.000 0.00 0.00 44.98 2.90
2435 2786 2.029964 GACCCGTGGAACTTCGCA 59.970 61.111 0.00 0.00 31.75 5.10
2484 2835 1.063649 ATCCGGATCGACGTCAACG 59.936 57.895 12.38 13.01 46.33 4.10
2562 3086 5.824904 AATGCATCCAGTTTGATAGTCAC 57.175 39.130 0.00 0.00 0.00 3.67
2571 3095 7.458397 TCCAGTTTGATAGTCACCAGTTTATT 58.542 34.615 0.00 0.00 0.00 1.40
2572 3096 7.942341 TCCAGTTTGATAGTCACCAGTTTATTT 59.058 33.333 0.00 0.00 0.00 1.40
2573 3097 8.576442 CCAGTTTGATAGTCACCAGTTTATTTT 58.424 33.333 0.00 0.00 0.00 1.82
2640 3164 8.632906 AATGAAGAGTGATCTTGAACTGAAAT 57.367 30.769 0.00 0.00 0.00 2.17
2889 3515 3.513768 TTGCAGCTTCGACTCCGCA 62.514 57.895 0.00 0.00 35.37 5.69
2987 3628 6.309494 TCCGTGTTACTAATTTCGTGATGAAG 59.691 38.462 0.00 0.00 37.99 3.02
3226 3867 0.753262 ATGTCTACCGCTCCATGACC 59.247 55.000 0.00 0.00 0.00 4.02
3268 3909 6.231211 CAGGTAATAATTACAGCCCTCGATT 58.769 40.000 0.00 0.00 37.88 3.34
3364 4015 5.569059 GTGTTAATTTCATCTTGTCCTTGCG 59.431 40.000 0.00 0.00 0.00 4.85
3446 4097 1.905512 GGAGAACAGCGGGGTGTAT 59.094 57.895 3.70 0.00 0.00 2.29
3653 4304 0.322816 GCCCAATCAAGAGCTCCACA 60.323 55.000 10.93 0.00 0.00 4.17
3728 4379 1.541670 GCTTTCACCCTACCAACGACA 60.542 52.381 0.00 0.00 0.00 4.35
3767 4418 0.473755 TTGTCTTGCTGAGCTTGGGA 59.526 50.000 5.83 0.00 0.00 4.37
3785 4436 7.121907 AGCTTGGGATTTTGAGAAGAACTATTC 59.878 37.037 0.00 0.00 0.00 1.75
3820 4473 8.634326 TCAGAATGTTTTGCAAAGTTGCCATAC 61.634 37.037 12.41 5.74 45.60 2.39
3871 4526 2.033550 GGGTACTCTCTCTATGTGTGCG 59.966 54.545 0.00 0.00 0.00 5.34
3957 4617 1.882989 TAGGGCCCAATTGCGCAAAC 61.883 55.000 28.81 13.74 45.78 2.93
3988 4657 7.770366 TCTTAAAGGAAAAGGTTGTAATCCC 57.230 36.000 0.00 0.00 0.00 3.85
4019 4694 5.064834 GTGGGATTATTTTCACCGAGAGTTC 59.935 44.000 0.00 0.00 0.00 3.01
4021 4696 5.646360 GGGATTATTTTCACCGAGAGTTCAA 59.354 40.000 0.00 0.00 0.00 2.69
4040 4715 7.373493 AGTTCAATAAAACTCTGAGCAAATGG 58.627 34.615 4.19 0.00 34.37 3.16
4060 4735 3.161866 GGTACACACATGGGTTCCAAAT 58.838 45.455 0.00 0.00 38.58 2.32
4125 4800 3.644966 ACCCTTCAACACAAAGTGAGA 57.355 42.857 3.88 0.00 36.96 3.27
4126 4801 3.963129 ACCCTTCAACACAAAGTGAGAA 58.037 40.909 3.88 6.83 36.96 2.87
4128 4803 3.694072 CCCTTCAACACAAAGTGAGAACA 59.306 43.478 3.88 0.00 36.96 3.18
4159 4834 5.091261 AGTGAGTTGATATGTGAAGGTCC 57.909 43.478 0.00 0.00 0.00 4.46
4165 4840 6.352516 AGTTGATATGTGAAGGTCCAAGATC 58.647 40.000 0.00 0.00 0.00 2.75
4192 4867 8.319143 TGACTCTAGTTAACCATTTTTACAGC 57.681 34.615 0.88 0.00 0.00 4.40
4240 4915 4.129380 CGATTGGCTAACATTGATCTCCA 58.871 43.478 0.00 0.00 0.00 3.86
4247 4922 4.391830 GCTAACATTGATCTCCAAACGTCA 59.608 41.667 0.00 0.00 38.43 4.35
4258 4933 0.365523 CAAACGTCAGCGGACATACG 59.634 55.000 17.26 6.06 44.54 3.06
4264 4939 1.216977 CAGCGGACATACGGGTCAA 59.783 57.895 6.50 0.00 39.59 3.18
4278 4953 1.303317 GTCAATGACCGGGCCTGTT 60.303 57.895 3.83 0.00 0.00 3.16
4286 4961 0.178975 ACCGGGCCTGTTCATTTTGA 60.179 50.000 11.58 0.00 0.00 2.69
4298 4973 5.609423 TGTTCATTTTGACCCTCCATTTTG 58.391 37.500 0.00 0.00 0.00 2.44
4321 4996 2.025898 CATGTATGCAAGCATGTCCCA 58.974 47.619 17.26 8.88 38.06 4.37
4330 5005 3.559069 CAAGCATGTCCCATACATCCTT 58.441 45.455 0.00 0.00 45.67 3.36
4361 5036 2.094078 CCCGGTCAAATGCATGTGATTT 60.094 45.455 22.29 0.00 0.00 2.17
4364 5039 3.592059 GGTCAAATGCATGTGATTTGCT 58.408 40.909 22.29 0.00 39.60 3.91
4383 5058 5.787953 TGCTGAGATGGAGAGAGAAATAG 57.212 43.478 0.00 0.00 0.00 1.73
4384 5059 5.207354 TGCTGAGATGGAGAGAGAAATAGT 58.793 41.667 0.00 0.00 0.00 2.12
4391 5066 9.965824 GAGATGGAGAGAGAAATAGTAAAGAAG 57.034 37.037 0.00 0.00 0.00 2.85
4436 5112 3.075005 TCCTACGTGGAGGGCTGC 61.075 66.667 0.00 0.00 40.56 5.25
4486 5172 4.993705 TGGTATGGGTATGAGGATTTCC 57.006 45.455 0.00 0.00 0.00 3.13
4488 5174 4.729370 TGGTATGGGTATGAGGATTTCCAA 59.271 41.667 0.00 0.00 38.89 3.53
4497 5183 0.611896 AGGATTTCCAAACAGCCCGG 60.612 55.000 0.00 0.00 38.89 5.73
4498 5184 0.898326 GGATTTCCAAACAGCCCGGT 60.898 55.000 0.00 0.00 35.64 5.28
4499 5185 0.966179 GATTTCCAAACAGCCCGGTT 59.034 50.000 0.00 0.00 0.00 4.44
4500 5186 0.678950 ATTTCCAAACAGCCCGGTTG 59.321 50.000 0.00 0.00 0.00 3.77
4501 5187 0.684805 TTTCCAAACAGCCCGGTTGT 60.685 50.000 0.14 0.14 0.00 3.32
4502 5188 0.684805 TTCCAAACAGCCCGGTTGTT 60.685 50.000 13.51 13.51 38.53 2.83
4503 5189 1.067250 CCAAACAGCCCGGTTGTTG 59.933 57.895 19.21 13.04 37.09 3.33
4504 5190 1.067250 CAAACAGCCCGGTTGTTGG 59.933 57.895 19.21 13.24 37.09 3.77
4511 5197 4.511838 CCGGTTGTTGGGGAATGT 57.488 55.556 0.00 0.00 0.00 2.71
4512 5198 3.654517 CCGGTTGTTGGGGAATGTA 57.345 52.632 0.00 0.00 0.00 2.29
4513 5199 1.459450 CCGGTTGTTGGGGAATGTAG 58.541 55.000 0.00 0.00 0.00 2.74
4514 5200 1.271707 CCGGTTGTTGGGGAATGTAGT 60.272 52.381 0.00 0.00 0.00 2.73
4515 5201 2.027007 CCGGTTGTTGGGGAATGTAGTA 60.027 50.000 0.00 0.00 0.00 1.82
4516 5202 3.559597 CCGGTTGTTGGGGAATGTAGTAA 60.560 47.826 0.00 0.00 0.00 2.24
4517 5203 4.266714 CGGTTGTTGGGGAATGTAGTAAT 58.733 43.478 0.00 0.00 0.00 1.89
4518 5204 4.703093 CGGTTGTTGGGGAATGTAGTAATT 59.297 41.667 0.00 0.00 0.00 1.40
4519 5205 5.184287 CGGTTGTTGGGGAATGTAGTAATTT 59.816 40.000 0.00 0.00 0.00 1.82
4520 5206 6.294843 CGGTTGTTGGGGAATGTAGTAATTTT 60.295 38.462 0.00 0.00 0.00 1.82
4521 5207 7.094291 CGGTTGTTGGGGAATGTAGTAATTTTA 60.094 37.037 0.00 0.00 0.00 1.52
4522 5208 8.586744 GGTTGTTGGGGAATGTAGTAATTTTAA 58.413 33.333 0.00 0.00 0.00 1.52
4523 5209 9.984190 GTTGTTGGGGAATGTAGTAATTTTAAA 57.016 29.630 0.00 0.00 0.00 1.52
4543 5229 3.668596 AAAAATATCCTACGCACACGC 57.331 42.857 0.00 0.00 45.53 5.34
4544 5230 2.303163 AAATATCCTACGCACACGCA 57.697 45.000 0.00 0.00 45.53 5.24
4545 5231 2.303163 AATATCCTACGCACACGCAA 57.697 45.000 0.00 0.00 45.53 4.85
4546 5232 1.852942 ATATCCTACGCACACGCAAG 58.147 50.000 0.00 0.00 45.53 4.01
4547 5233 0.812549 TATCCTACGCACACGCAAGA 59.187 50.000 0.00 0.00 45.53 3.02
4548 5234 0.175760 ATCCTACGCACACGCAAGAT 59.824 50.000 0.00 0.00 45.53 2.40
4549 5235 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
4550 5236 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
4551 5237 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
4552 5238 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
4553 5239 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
4554 5240 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
4555 5241 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
4556 5242 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
4557 5243 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
4558 5244 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
4559 5245 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
4560 5246 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
4561 5247 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
4562 5248 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
4563 5249 3.364664 CGCAAGATCATGGTGATGCATAC 60.365 47.826 0.00 0.00 37.20 2.39
4564 5250 3.057736 GCAAGATCATGGTGATGCATACC 60.058 47.826 14.78 14.78 37.20 2.73
4570 5256 2.022764 TGGTGATGCATACCAACGAG 57.977 50.000 19.47 0.00 44.79 4.18
4571 5257 1.552792 TGGTGATGCATACCAACGAGA 59.447 47.619 19.47 2.67 44.79 4.04
4572 5258 2.205074 GGTGATGCATACCAACGAGAG 58.795 52.381 16.06 0.00 38.12 3.20
4573 5259 2.205074 GTGATGCATACCAACGAGAGG 58.795 52.381 0.00 0.00 0.00 3.69
4574 5260 1.138859 TGATGCATACCAACGAGAGGG 59.861 52.381 0.00 0.00 0.00 4.30
4575 5261 0.469917 ATGCATACCAACGAGAGGGG 59.530 55.000 0.00 0.00 35.98 4.79
4576 5262 0.616395 TGCATACCAACGAGAGGGGA 60.616 55.000 0.00 0.00 34.28 4.81
4577 5263 0.105039 GCATACCAACGAGAGGGGAG 59.895 60.000 0.00 0.00 34.28 4.30
4578 5264 1.776662 CATACCAACGAGAGGGGAGA 58.223 55.000 0.00 0.00 34.28 3.71
4579 5265 1.683917 CATACCAACGAGAGGGGAGAG 59.316 57.143 0.00 0.00 34.28 3.20
4580 5266 0.702902 TACCAACGAGAGGGGAGAGT 59.297 55.000 0.00 0.00 34.28 3.24
4581 5267 0.900647 ACCAACGAGAGGGGAGAGTG 60.901 60.000 0.00 0.00 34.28 3.51
4582 5268 0.900647 CCAACGAGAGGGGAGAGTGT 60.901 60.000 0.00 0.00 32.12 3.55
4583 5269 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
4584 5270 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
4585 5271 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
4586 5272 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
4587 5273 0.899019 GAGAGGGGAGAGTGTTGTCC 59.101 60.000 0.00 0.00 36.03 4.02
4588 5274 0.191064 AGAGGGGAGAGTGTTGTCCA 59.809 55.000 0.00 0.00 38.50 4.02
4589 5275 0.321996 GAGGGGAGAGTGTTGTCCAC 59.678 60.000 0.00 0.00 40.47 4.02
4590 5276 1.472662 AGGGGAGAGTGTTGTCCACG 61.473 60.000 0.00 0.00 44.77 4.94
4592 5278 4.748514 AGGGGAGAGTGTTGTCCACGTA 62.749 54.545 0.00 0.00 44.77 3.57
4593 5279 5.985753 AGGGGAGAGTGTTGTCCACGTAT 62.986 52.174 0.00 0.00 44.77 3.06
4598 5284 1.625616 GTGTTGTCCACGTATCCTCG 58.374 55.000 0.00 0.00 33.61 4.63
4599 5285 1.068055 GTGTTGTCCACGTATCCTCGT 60.068 52.381 0.00 0.00 45.10 4.18
4600 5286 2.162208 GTGTTGTCCACGTATCCTCGTA 59.838 50.000 0.00 0.00 42.27 3.43
4601 5287 2.421073 TGTTGTCCACGTATCCTCGTAG 59.579 50.000 0.00 0.00 42.27 3.51
4602 5288 2.679837 GTTGTCCACGTATCCTCGTAGA 59.320 50.000 0.00 0.00 42.27 2.59
4603 5289 2.283298 TGTCCACGTATCCTCGTAGAC 58.717 52.381 9.85 9.85 46.47 2.59
4604 5290 1.601430 GTCCACGTATCCTCGTAGACC 59.399 57.143 6.55 0.00 42.92 3.85
4605 5291 0.585357 CCACGTATCCTCGTAGACCG 59.415 60.000 0.00 0.00 42.27 4.79
4606 5292 1.575244 CACGTATCCTCGTAGACCGA 58.425 55.000 0.00 0.00 45.00 4.69
4607 5293 1.935873 CACGTATCCTCGTAGACCGAA 59.064 52.381 0.00 0.00 46.75 4.30
4608 5294 2.352651 CACGTATCCTCGTAGACCGAAA 59.647 50.000 0.00 0.00 46.75 3.46
4609 5295 2.611292 ACGTATCCTCGTAGACCGAAAG 59.389 50.000 0.00 0.00 46.75 2.62
4610 5296 2.601741 CGTATCCTCGTAGACCGAAAGC 60.602 54.545 0.00 0.00 46.75 3.51
4611 5297 0.381089 ATCCTCGTAGACCGAAAGCG 59.619 55.000 0.00 0.00 46.75 4.68
4635 5321 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
4636 5322 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
4637 5323 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
4638 5324 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
4639 5325 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
4640 5326 0.179225 GCACAACGCGGTTGATGTAG 60.179 55.000 22.26 1.41 45.28 2.74
4641 5327 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
4642 5328 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
4643 5329 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
4644 5330 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
4645 5331 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
4646 5332 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
4647 5333 1.466192 CGCGGTTGATGTAGTCGTACA 60.466 52.381 0.00 0.00 43.43 2.90
4657 5343 5.752892 ATGTAGTCGTACATCTTCACGAT 57.247 39.130 0.00 0.00 45.20 3.73
4658 5344 5.749620 ATGTAGTCGTACATCTTCACGATC 58.250 41.667 0.00 0.00 45.20 3.69
4659 5345 5.277876 ATGTAGTCGTACATCTTCACGATCC 60.278 44.000 0.00 0.00 45.20 3.36
4660 5346 2.750301 TCGTACATCTTCACGATCCG 57.250 50.000 0.00 0.00 41.89 4.18
4661 5347 2.282407 TCGTACATCTTCACGATCCGA 58.718 47.619 0.00 0.00 41.89 4.55
4662 5348 2.031314 TCGTACATCTTCACGATCCGAC 59.969 50.000 0.00 0.00 41.89 4.79
4663 5349 2.728922 GTACATCTTCACGATCCGACC 58.271 52.381 0.00 0.00 0.00 4.79
4664 5350 0.100682 ACATCTTCACGATCCGACCG 59.899 55.000 0.00 0.00 0.00 4.79
4665 5351 0.380733 CATCTTCACGATCCGACCGA 59.619 55.000 0.00 0.00 0.00 4.69
4666 5352 1.001268 CATCTTCACGATCCGACCGAT 60.001 52.381 0.00 0.00 0.00 4.18
4667 5353 0.661552 TCTTCACGATCCGACCGATC 59.338 55.000 0.00 0.00 43.58 3.69
4668 5354 0.317938 CTTCACGATCCGACCGATCC 60.318 60.000 0.00 0.00 44.07 3.36
4669 5355 1.033202 TTCACGATCCGACCGATCCA 61.033 55.000 0.00 0.00 44.07 3.41
4670 5356 1.033202 TCACGATCCGACCGATCCAA 61.033 55.000 0.00 0.00 44.07 3.53
4671 5357 0.595053 CACGATCCGACCGATCCAAG 60.595 60.000 0.00 0.00 44.07 3.61
4672 5358 1.035932 ACGATCCGACCGATCCAAGT 61.036 55.000 0.00 0.00 44.07 3.16
4673 5359 0.949397 CGATCCGACCGATCCAAGTA 59.051 55.000 0.00 0.00 44.07 2.24
4674 5360 1.540267 CGATCCGACCGATCCAAGTAT 59.460 52.381 0.00 0.00 44.07 2.12
4675 5361 2.414293 CGATCCGACCGATCCAAGTATC 60.414 54.545 0.00 0.00 44.07 2.24
4676 5362 0.949397 TCCGACCGATCCAAGTATCG 59.051 55.000 0.00 0.00 46.51 2.92
4684 5370 1.517276 GATCCAAGTATCGAACGCACG 59.483 52.381 0.00 0.00 0.00 5.34
4685 5371 0.457166 TCCAAGTATCGAACGCACGG 60.457 55.000 0.00 0.00 0.00 4.94
4686 5372 1.343821 CAAGTATCGAACGCACGGC 59.656 57.895 0.00 0.00 0.00 5.68
4687 5373 1.080366 AAGTATCGAACGCACGGCA 60.080 52.632 0.00 0.00 0.00 5.69
4688 5374 1.349259 AAGTATCGAACGCACGGCAC 61.349 55.000 0.00 1.63 0.00 5.01
4689 5375 2.507547 TATCGAACGCACGGCACC 60.508 61.111 0.00 0.00 0.00 5.01
4690 5376 2.997075 TATCGAACGCACGGCACCT 61.997 57.895 0.00 0.00 0.00 4.00
4691 5377 2.877360 TATCGAACGCACGGCACCTC 62.877 60.000 0.00 0.00 0.00 3.85
4701 5387 2.435059 GGCACCTCCGAGTTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
4702 5388 2.343758 GCACCTCCGAGTTCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
4703 5389 2.029844 GCACCTCCGAGTTCAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
4704 5390 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
4705 5391 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
4706 5392 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
4707 5393 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
4708 5394 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
4709 5395 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
4710 5396 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
4711 5397 0.504384 CGAGTTCAGCACACGTTCAG 59.496 55.000 0.00 0.00 35.01 3.02
4712 5398 0.233332 GAGTTCAGCACACGTTCAGC 59.767 55.000 0.00 0.00 0.00 4.26
4713 5399 0.179073 AGTTCAGCACACGTTCAGCT 60.179 50.000 0.64 0.64 39.63 4.24
4714 5400 0.233332 GTTCAGCACACGTTCAGCTC 59.767 55.000 3.38 0.00 36.26 4.09
4715 5401 1.215014 TTCAGCACACGTTCAGCTCG 61.215 55.000 3.38 0.00 36.26 5.03
4716 5402 1.661509 CAGCACACGTTCAGCTCGA 60.662 57.895 3.38 0.00 36.26 4.04
4717 5403 1.010935 CAGCACACGTTCAGCTCGAT 61.011 55.000 3.38 0.00 36.26 3.59
4718 5404 1.010935 AGCACACGTTCAGCTCGATG 61.011 55.000 0.00 0.07 32.05 3.84
4719 5405 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
4720 5406 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
4721 5407 0.729478 ACACGTTCAGCTCGATGACG 60.729 55.000 0.00 4.93 41.26 4.35
4722 5408 0.729478 CACGTTCAGCTCGATGACGT 60.729 55.000 0.00 5.49 37.39 4.34
4723 5409 0.039437 ACGTTCAGCTCGATGACGTT 60.039 50.000 0.00 0.00 40.69 3.99
4724 5410 0.635731 CGTTCAGCTCGATGACGTTC 59.364 55.000 0.00 0.00 40.69 3.95
4725 5411 0.992802 GTTCAGCTCGATGACGTTCC 59.007 55.000 0.00 0.00 40.69 3.62
4726 5412 0.456142 TTCAGCTCGATGACGTTCCG 60.456 55.000 0.00 0.00 40.69 4.30
4727 5413 2.202623 AGCTCGATGACGTTCCGC 60.203 61.111 0.00 0.00 40.69 5.54
4729 5415 2.099638 CTCGATGACGTTCCGCGA 59.900 61.111 8.23 0.00 44.77 5.87
4730 5416 1.513373 CTCGATGACGTTCCGCGAA 60.513 57.895 8.23 0.00 44.77 4.70
4731 5417 1.730593 CTCGATGACGTTCCGCGAAC 61.731 60.000 8.23 9.56 44.77 3.95
4732 5418 1.800315 CGATGACGTTCCGCGAACT 60.800 57.895 8.23 0.74 44.77 3.01
4733 5419 1.730593 CGATGACGTTCCGCGAACTC 61.731 60.000 8.23 10.00 44.77 3.01
4734 5420 1.411493 GATGACGTTCCGCGAACTCC 61.411 60.000 8.23 5.50 44.77 3.85
4735 5421 3.170585 GACGTTCCGCGAACTCCG 61.171 66.667 8.23 4.78 44.77 4.63
4736 5422 3.599792 GACGTTCCGCGAACTCCGA 62.600 63.158 8.23 0.00 44.77 4.55
4737 5423 2.202570 CGTTCCGCGAACTCCGAT 60.203 61.111 8.23 0.00 44.77 4.18
4738 5424 2.222217 CGTTCCGCGAACTCCGATC 61.222 63.158 8.23 0.00 44.77 3.69
4739 5425 1.877165 GTTCCGCGAACTCCGATCC 60.877 63.158 8.23 0.00 39.23 3.36
4740 5426 2.344981 TTCCGCGAACTCCGATCCA 61.345 57.895 8.23 0.00 41.76 3.41
4741 5427 1.879737 TTCCGCGAACTCCGATCCAA 61.880 55.000 8.23 0.00 41.76 3.53
4742 5428 2.165301 CCGCGAACTCCGATCCAAC 61.165 63.158 8.23 0.00 41.76 3.77
4743 5429 1.445410 CGCGAACTCCGATCCAACA 60.445 57.895 0.00 0.00 41.76 3.33
4744 5430 1.413767 CGCGAACTCCGATCCAACAG 61.414 60.000 0.00 0.00 41.76 3.16
4745 5431 0.108804 GCGAACTCCGATCCAACAGA 60.109 55.000 0.00 0.00 41.76 3.41
4746 5432 1.914634 CGAACTCCGATCCAACAGAG 58.085 55.000 0.00 0.00 41.76 3.35
4747 5433 1.646189 GAACTCCGATCCAACAGAGC 58.354 55.000 0.00 0.00 0.00 4.09
4748 5434 1.205893 GAACTCCGATCCAACAGAGCT 59.794 52.381 0.00 0.00 0.00 4.09
4749 5435 1.270907 ACTCCGATCCAACAGAGCTT 58.729 50.000 0.00 0.00 0.00 3.74
4750 5436 1.205893 ACTCCGATCCAACAGAGCTTC 59.794 52.381 0.00 0.00 0.00 3.86
4751 5437 1.205655 CTCCGATCCAACAGAGCTTCA 59.794 52.381 0.00 0.00 0.00 3.02
4752 5438 1.066858 TCCGATCCAACAGAGCTTCAC 60.067 52.381 0.00 0.00 0.00 3.18
4753 5439 0.994995 CGATCCAACAGAGCTTCACG 59.005 55.000 0.00 0.00 0.00 4.35
4754 5440 1.363744 GATCCAACAGAGCTTCACGG 58.636 55.000 0.00 0.00 0.00 4.94
4755 5441 0.036010 ATCCAACAGAGCTTCACGGG 60.036 55.000 0.00 0.00 0.00 5.28
4756 5442 1.118965 TCCAACAGAGCTTCACGGGA 61.119 55.000 0.00 0.00 0.00 5.14
4757 5443 0.671781 CCAACAGAGCTTCACGGGAG 60.672 60.000 0.00 0.00 0.00 4.30
4758 5444 0.318441 CAACAGAGCTTCACGGGAGA 59.682 55.000 0.00 0.00 0.00 3.71
4759 5445 0.605589 AACAGAGCTTCACGGGAGAG 59.394 55.000 0.00 0.00 0.00 3.20
4760 5446 0.540830 ACAGAGCTTCACGGGAGAGT 60.541 55.000 0.00 0.00 0.00 3.24
4761 5447 0.605589 CAGAGCTTCACGGGAGAGTT 59.394 55.000 0.00 0.00 0.00 3.01
4762 5448 0.892063 AGAGCTTCACGGGAGAGTTC 59.108 55.000 5.87 5.87 0.00 3.01
4763 5449 0.108567 GAGCTTCACGGGAGAGTTCC 60.109 60.000 0.00 0.00 43.23 3.62
4769 5455 2.182030 CGGGAGAGTTCCGTCAGC 59.818 66.667 0.00 0.00 45.04 4.26
4770 5456 2.636412 CGGGAGAGTTCCGTCAGCA 61.636 63.158 0.00 0.00 45.04 4.41
4771 5457 1.079750 GGGAGAGTTCCGTCAGCAC 60.080 63.158 0.00 0.00 45.04 4.40
4772 5458 1.444553 GGAGAGTTCCGTCAGCACG 60.445 63.158 0.00 0.00 46.29 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.283768 CTGGTTTTGGGCTTATCTTAAAATTTT 57.716 29.630 8.75 8.75 0.00 1.82
16 17 8.655901 TCTGGTTTTGGGCTTATCTTAAAATTT 58.344 29.630 0.00 0.00 0.00 1.82
17 18 8.201242 TCTGGTTTTGGGCTTATCTTAAAATT 57.799 30.769 0.00 0.00 0.00 1.82
18 19 7.790782 TCTGGTTTTGGGCTTATCTTAAAAT 57.209 32.000 0.00 0.00 0.00 1.82
19 20 7.604657 TTCTGGTTTTGGGCTTATCTTAAAA 57.395 32.000 0.00 0.00 0.00 1.52
20 21 7.256154 CCTTTCTGGTTTTGGGCTTATCTTAAA 60.256 37.037 0.00 0.00 0.00 1.52
21 22 6.210584 CCTTTCTGGTTTTGGGCTTATCTTAA 59.789 38.462 0.00 0.00 0.00 1.85
22 23 5.714806 CCTTTCTGGTTTTGGGCTTATCTTA 59.285 40.000 0.00 0.00 0.00 2.10
23 24 4.528206 CCTTTCTGGTTTTGGGCTTATCTT 59.472 41.667 0.00 0.00 0.00 2.40
24 25 4.089361 CCTTTCTGGTTTTGGGCTTATCT 58.911 43.478 0.00 0.00 0.00 1.98
25 26 4.086457 TCCTTTCTGGTTTTGGGCTTATC 58.914 43.478 0.00 0.00 37.07 1.75
26 27 4.089361 CTCCTTTCTGGTTTTGGGCTTAT 58.911 43.478 0.00 0.00 37.07 1.73
27 28 3.496331 CTCCTTTCTGGTTTTGGGCTTA 58.504 45.455 0.00 0.00 37.07 3.09
28 29 2.319844 CTCCTTTCTGGTTTTGGGCTT 58.680 47.619 0.00 0.00 37.07 4.35
29 30 1.481242 CCTCCTTTCTGGTTTTGGGCT 60.481 52.381 0.00 0.00 37.07 5.19
30 31 0.969149 CCTCCTTTCTGGTTTTGGGC 59.031 55.000 0.00 0.00 37.07 5.36
31 32 1.146982 TCCCTCCTTTCTGGTTTTGGG 59.853 52.381 0.00 0.00 37.07 4.12
32 33 2.158460 ACTCCCTCCTTTCTGGTTTTGG 60.158 50.000 0.00 0.00 37.07 3.28
33 34 3.229697 ACTCCCTCCTTTCTGGTTTTG 57.770 47.619 0.00 0.00 37.07 2.44
34 35 6.447084 TCATATACTCCCTCCTTTCTGGTTTT 59.553 38.462 0.00 0.00 37.07 2.43
35 36 5.970640 TCATATACTCCCTCCTTTCTGGTTT 59.029 40.000 0.00 0.00 37.07 3.27
36 37 5.538877 TCATATACTCCCTCCTTTCTGGTT 58.461 41.667 0.00 0.00 37.07 3.67
37 38 5.157770 TCATATACTCCCTCCTTTCTGGT 57.842 43.478 0.00 0.00 37.07 4.00
38 39 6.957020 AGTATCATATACTCCCTCCTTTCTGG 59.043 42.308 0.00 0.00 37.10 3.86
39 40 8.062065 GAGTATCATATACTCCCTCCTTTCTG 57.938 42.308 13.72 0.00 38.33 3.02
50 51 7.504238 CCTCATAGTGGGGAGTATCATATACTC 59.496 44.444 15.62 15.62 41.85 2.59
51 52 7.358263 CCTCATAGTGGGGAGTATCATATACT 58.642 42.308 0.00 0.00 41.85 2.12
85 86 9.799106 AGCACCTTATCTAAGCATTTATACATT 57.201 29.630 0.00 0.00 32.02 2.71
89 90 9.720769 GGTTAGCACCTTATCTAAGCATTTATA 57.279 33.333 6.39 0.00 40.81 0.98
90 91 8.217799 TGGTTAGCACCTTATCTAAGCATTTAT 58.782 33.333 9.07 0.00 43.83 1.40
145 146 5.271625 CATCAACAAGTGAAGCATCTATGC 58.728 41.667 6.84 6.84 45.54 3.14
154 155 4.142730 GGAGCTTAGCATCAACAAGTGAAG 60.143 45.833 7.07 0.00 40.50 3.02
231 232 9.603921 ATGAACCTAGGCAAAATCAATTAAATG 57.396 29.630 9.30 0.00 0.00 2.32
240 241 3.445096 AGCACATGAACCTAGGCAAAATC 59.555 43.478 9.30 0.42 0.00 2.17
241 242 3.434309 AGCACATGAACCTAGGCAAAAT 58.566 40.909 9.30 0.00 0.00 1.82
251 252 1.001181 ACCAATGCAAGCACATGAACC 59.999 47.619 0.00 0.00 0.00 3.62
277 279 2.154462 GATGTGAGTTTGGTGACCCAG 58.846 52.381 0.00 0.00 43.15 4.45
285 287 1.066573 AGAGGAGCGATGTGAGTTTGG 60.067 52.381 0.00 0.00 0.00 3.28
287 289 3.409026 AAAGAGGAGCGATGTGAGTTT 57.591 42.857 0.00 0.00 0.00 2.66
297 299 2.872858 GGCAAGGTAATAAAGAGGAGCG 59.127 50.000 0.00 0.00 0.00 5.03
298 300 3.628032 GTGGCAAGGTAATAAAGAGGAGC 59.372 47.826 0.00 0.00 0.00 4.70
329 331 0.698238 AGGCTGTCATGTAGGCCAAA 59.302 50.000 20.73 0.00 46.23 3.28
332 334 1.762957 TCTAAGGCTGTCATGTAGGCC 59.237 52.381 17.77 16.09 44.38 5.19
352 354 6.266103 CCCCAATGCTTCATCTTGTACATATT 59.734 38.462 0.00 0.00 0.00 1.28
367 369 2.948924 AGGCCCTCCCCAATGCTT 60.949 61.111 0.00 0.00 0.00 3.91
371 373 0.695803 CTACTCAGGCCCTCCCCAAT 60.696 60.000 0.00 0.00 0.00 3.16
404 406 0.696501 AAAATGGACCTGGTAGCCGT 59.303 50.000 0.00 0.00 0.00 5.68
408 410 4.202472 GGATCCCTAAAATGGACCTGGTAG 60.202 50.000 0.00 0.00 33.94 3.18
413 415 3.793827 ACATGGATCCCTAAAATGGACCT 59.206 43.478 9.90 0.00 33.94 3.85
414 416 4.184649 ACATGGATCCCTAAAATGGACC 57.815 45.455 9.90 0.00 33.94 4.46
432 434 2.916702 TATGAGCGCATCTCCAACAT 57.083 45.000 11.47 4.59 41.18 2.71
520 522 1.521423 CCACGTTCGAACTGAGTGAAC 59.479 52.381 26.43 5.90 38.83 3.18
524 526 1.135527 TGAACCACGTTCGAACTGAGT 59.864 47.619 24.80 15.67 44.55 3.41
554 556 1.467342 CAAACAACTAACTAGGCGCCC 59.533 52.381 26.15 5.07 0.00 6.13
555 557 2.419667 TCAAACAACTAACTAGGCGCC 58.580 47.619 21.89 21.89 0.00 6.53
557 559 5.856126 TGAATCAAACAACTAACTAGGCG 57.144 39.130 0.00 0.00 0.00 5.52
561 602 7.284074 TGAGGGTTGAATCAAACAACTAACTA 58.716 34.615 13.49 0.00 44.50 2.24
603 644 5.030295 CGATAAAGCTAAAGGACGAACGTA 58.970 41.667 0.00 0.00 0.00 3.57
665 706 9.372369 GCATTACTCTGAACTATGAACTAAACT 57.628 33.333 0.00 0.00 0.00 2.66
666 707 9.372369 AGCATTACTCTGAACTATGAACTAAAC 57.628 33.333 0.00 0.00 0.00 2.01
667 708 9.587772 GAGCATTACTCTGAACTATGAACTAAA 57.412 33.333 0.00 0.00 42.62 1.85
668 709 8.749354 TGAGCATTACTCTGAACTATGAACTAA 58.251 33.333 0.00 0.00 46.41 2.24
669 710 8.293699 TGAGCATTACTCTGAACTATGAACTA 57.706 34.615 0.00 0.00 46.41 2.24
670 711 7.175347 TGAGCATTACTCTGAACTATGAACT 57.825 36.000 0.00 0.00 46.41 3.01
671 712 7.925483 AGATGAGCATTACTCTGAACTATGAAC 59.075 37.037 0.00 0.00 46.41 3.18
672 713 8.016301 AGATGAGCATTACTCTGAACTATGAA 57.984 34.615 0.00 0.00 46.41 2.57
673 714 7.286316 TGAGATGAGCATTACTCTGAACTATGA 59.714 37.037 0.00 0.00 46.41 2.15
674 715 7.381948 GTGAGATGAGCATTACTCTGAACTATG 59.618 40.741 0.00 0.00 46.41 2.23
675 716 7.069208 TGTGAGATGAGCATTACTCTGAACTAT 59.931 37.037 0.00 0.00 46.41 2.12
676 717 6.378280 TGTGAGATGAGCATTACTCTGAACTA 59.622 38.462 0.00 0.00 46.41 2.24
677 718 5.186603 TGTGAGATGAGCATTACTCTGAACT 59.813 40.000 0.00 0.00 46.41 3.01
678 719 5.414360 TGTGAGATGAGCATTACTCTGAAC 58.586 41.667 0.00 0.00 46.41 3.18
679 720 5.665916 TGTGAGATGAGCATTACTCTGAA 57.334 39.130 0.00 0.00 46.41 3.02
680 721 5.361857 TCATGTGAGATGAGCATTACTCTGA 59.638 40.000 0.00 0.00 46.41 3.27
681 722 5.598769 TCATGTGAGATGAGCATTACTCTG 58.401 41.667 0.00 0.00 46.41 3.35
682 723 5.866159 TCATGTGAGATGAGCATTACTCT 57.134 39.130 0.00 0.00 46.41 3.24
683 724 6.147492 GGAATCATGTGAGATGAGCATTACTC 59.853 42.308 0.00 0.00 46.45 2.59
684 725 5.996513 GGAATCATGTGAGATGAGCATTACT 59.003 40.000 0.00 0.00 0.00 2.24
685 726 5.996513 AGGAATCATGTGAGATGAGCATTAC 59.003 40.000 0.00 0.00 0.00 1.89
734 1018 8.862085 TGGATAATGACAACTATGACCGTATTA 58.138 33.333 0.00 0.00 0.00 0.98
742 1026 6.484308 CACATGCTGGATAATGACAACTATGA 59.516 38.462 0.00 0.00 0.00 2.15
819 1108 3.366883 GGCAGGCGTTGACAAAATAATGA 60.367 43.478 0.00 0.00 33.76 2.57
912 1201 2.270527 GAGGCTTGTGAGGAGGCC 59.729 66.667 0.00 0.00 44.38 5.19
922 1211 1.927174 CGACGACTTTATGGAGGCTTG 59.073 52.381 0.00 0.00 0.00 4.01
923 1212 1.134788 CCGACGACTTTATGGAGGCTT 60.135 52.381 0.00 0.00 0.00 4.35
924 1213 0.460311 CCGACGACTTTATGGAGGCT 59.540 55.000 0.00 0.00 0.00 4.58
1042 1343 1.977544 CGAGGAGGAGGACAACGGT 60.978 63.158 0.00 0.00 0.00 4.83
1910 2246 2.359975 GAGGAACGGGTTGGCCAG 60.360 66.667 5.11 0.00 36.17 4.85
2145 2481 1.136147 GTGTACTCGGCGATCACGT 59.864 57.895 11.27 7.48 41.98 4.49
2194 2530 4.400529 TTGACATGATGGCGTATGTACT 57.599 40.909 0.00 0.00 37.63 2.73
2279 2630 1.597027 CGTCGGGTTTGCAGAGGTT 60.597 57.895 0.00 0.00 0.00 3.50
2435 2786 2.069165 GCAGGGTCCCCTTGTTCTGT 62.069 60.000 3.51 0.00 45.70 3.41
2543 3067 3.609853 TGGTGACTATCAAACTGGATGC 58.390 45.455 0.00 0.00 0.00 3.91
2617 3141 6.652481 GGATTTCAGTTCAAGATCACTCTTCA 59.348 38.462 0.00 0.00 39.78 3.02
2640 3164 9.747898 AAATATAAAACAAGTGGTACTGATGGA 57.252 29.630 0.00 0.00 0.00 3.41
2889 3515 2.613223 GCAGAAGAAGTAGGACGGCTTT 60.613 50.000 0.00 0.00 0.00 3.51
2987 3628 0.582005 GACTGCAAACTCACACGGAC 59.418 55.000 0.00 0.00 0.00 4.79
3077 3718 0.953960 GTTGACAACGCTGGGTAGGG 60.954 60.000 1.86 0.00 42.20 3.53
3079 3720 1.429463 GAGTTGACAACGCTGGGTAG 58.571 55.000 14.04 0.00 36.23 3.18
3226 3867 3.277133 CCGTTGAGGCATGGGTTG 58.723 61.111 0.00 0.00 0.00 3.77
3268 3909 4.371624 AATGAGGTGGTGAATGAAGTCA 57.628 40.909 0.00 0.00 0.00 3.41
3364 4015 3.059834 CGCGTAAATGTACCTACACACAC 59.940 47.826 0.00 0.00 39.30 3.82
3446 4097 0.108377 ATGTCAGCGGCGTCACATTA 60.108 50.000 9.37 0.00 0.00 1.90
3728 4379 3.508845 AGTAACACTCCTGCCAACATT 57.491 42.857 0.00 0.00 0.00 2.71
3767 4418 9.057089 ACTGAAACGAATAGTTCTTCTCAAAAT 57.943 29.630 0.00 0.00 43.37 1.82
3785 4436 4.797868 TGCAAAACATTCTGAACTGAAACG 59.202 37.500 0.00 0.00 0.00 3.60
3820 4473 2.857152 CAACATCAAAACACCACAACCG 59.143 45.455 0.00 0.00 0.00 4.44
3922 4577 3.636764 GGCCCTAATTCAATCCATTTCGT 59.363 43.478 0.00 0.00 0.00 3.85
3957 4617 6.986231 ACAACCTTTTCCTTTAAGAAGCAATG 59.014 34.615 0.00 0.00 0.00 2.82
3977 4646 1.153309 CCGTCCGGGGATTACAACC 60.153 63.158 0.00 0.00 0.00 3.77
3988 4657 1.944709 GAAAATAATCCCACCGTCCGG 59.055 52.381 3.76 3.76 42.03 5.14
4019 4694 7.538678 GTGTACCATTTGCTCAGAGTTTTATTG 59.461 37.037 0.00 0.00 0.00 1.90
4021 4696 6.714810 TGTGTACCATTTGCTCAGAGTTTTAT 59.285 34.615 0.00 0.00 0.00 1.40
4036 4711 2.109128 TGGAACCCATGTGTGTACCATT 59.891 45.455 0.00 0.00 0.00 3.16
4040 4715 3.572255 ACATTTGGAACCCATGTGTGTAC 59.428 43.478 5.36 0.00 32.76 2.90
4048 4723 3.168035 TGTGCTACATTTGGAACCCAT 57.832 42.857 0.00 0.00 31.53 4.00
4086 4761 3.332034 GGTTAACCAAGATGTGCTACGT 58.668 45.455 20.12 0.00 35.64 3.57
4088 4763 3.951663 AGGGTTAACCAAGATGTGCTAC 58.048 45.455 25.71 4.13 43.89 3.58
4125 4800 9.120538 ACATATCAACTCACTTACACTTTTGTT 57.879 29.630 0.00 0.00 37.15 2.83
4126 4801 8.559536 CACATATCAACTCACTTACACTTTTGT 58.440 33.333 0.00 0.00 40.02 2.83
4128 4803 8.902540 TCACATATCAACTCACTTACACTTTT 57.097 30.769 0.00 0.00 0.00 2.27
4159 4834 9.442047 AAATGGTTAACTAGAGTCAAGATCTTG 57.558 33.333 26.56 26.56 41.71 3.02
4191 4866 1.451067 AGATGCTCTCACTTGCTTGC 58.549 50.000 0.00 0.00 0.00 4.01
4192 4867 3.593096 TGTAGATGCTCTCACTTGCTTG 58.407 45.455 0.00 0.00 0.00 4.01
4215 4890 5.758296 GGAGATCAATGTTAGCCAATCGTTA 59.242 40.000 0.00 0.00 0.00 3.18
4240 4915 0.734942 CCGTATGTCCGCTGACGTTT 60.735 55.000 8.36 0.00 44.86 3.60
4247 4922 0.179084 CATTGACCCGTATGTCCGCT 60.179 55.000 0.00 0.00 34.25 5.52
4264 4939 0.039618 AAATGAACAGGCCCGGTCAT 59.960 50.000 14.08 14.08 0.00 3.06
4271 4946 1.546029 GAGGGTCAAAATGAACAGGCC 59.454 52.381 0.00 0.00 35.30 5.19
4278 4953 4.502950 GCACAAAATGGAGGGTCAAAATGA 60.503 41.667 0.00 0.00 0.00 2.57
4286 4961 2.014010 ACATGCACAAAATGGAGGGT 57.986 45.000 0.00 0.00 34.26 4.34
4319 4994 4.038402 GGGCAATTTGAGAAGGATGTATGG 59.962 45.833 0.00 0.00 0.00 2.74
4321 4996 3.885297 CGGGCAATTTGAGAAGGATGTAT 59.115 43.478 0.00 0.00 0.00 2.29
4330 5005 1.988293 TTTGACCGGGCAATTTGAGA 58.012 45.000 26.67 4.19 0.00 3.27
4361 5036 5.207354 ACTATTTCTCTCTCCATCTCAGCA 58.793 41.667 0.00 0.00 0.00 4.41
4364 5039 9.480861 TTCTTTACTATTTCTCTCTCCATCTCA 57.519 33.333 0.00 0.00 0.00 3.27
4391 5066 4.767409 GCCCACCCAGATAATATTTTCTCC 59.233 45.833 5.54 0.00 0.00 3.71
4399 5074 1.517238 TGCAGCCCACCCAGATAATA 58.483 50.000 0.00 0.00 0.00 0.98
4402 5077 1.708993 GGATGCAGCCCACCCAGATA 61.709 60.000 10.76 0.00 0.00 1.98
4406 5081 2.286045 TAGGATGCAGCCCACCCA 60.286 61.111 19.48 0.00 0.00 4.51
4473 5159 3.381590 GGGCTGTTTGGAAATCCTCATAC 59.618 47.826 0.44 0.00 36.82 2.39
4478 5164 0.611896 CCGGGCTGTTTGGAAATCCT 60.612 55.000 0.00 0.00 36.82 3.24
4486 5172 1.067250 CCAACAACCGGGCTGTTTG 59.933 57.895 18.58 13.08 34.80 2.93
4488 5174 2.520741 CCCAACAACCGGGCTGTT 60.521 61.111 16.17 16.17 36.72 3.16
4497 5183 9.984190 TTTAAAATTACTACATTCCCCAACAAC 57.016 29.630 0.00 0.00 0.00 3.32
4523 5209 3.668596 GCGTGTGCGTAGGATATTTTT 57.331 42.857 0.00 0.00 40.81 1.94
4524 5210 6.425135 ATCTTGCGTGTGCGTAGGATATTTT 61.425 40.000 1.57 0.00 44.58 1.82
4525 5211 4.977985 ATCTTGCGTGTGCGTAGGATATTT 60.978 41.667 1.57 0.00 44.58 1.40
4526 5212 3.492656 ATCTTGCGTGTGCGTAGGATATT 60.493 43.478 1.57 0.00 44.58 1.28
4527 5213 2.035961 ATCTTGCGTGTGCGTAGGATAT 59.964 45.455 1.57 0.00 44.58 1.63
4528 5214 1.407618 ATCTTGCGTGTGCGTAGGATA 59.592 47.619 1.57 0.00 44.58 2.59
4536 5222 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
4537 5223 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
4538 5224 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
4539 5225 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
4540 5226 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
4541 5227 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
4542 5228 3.057736 GGTATGCATCACCATGATCTTGC 60.058 47.826 0.19 0.00 34.28 4.01
4543 5229 4.139038 TGGTATGCATCACCATGATCTTG 58.861 43.478 18.44 1.60 41.17 3.02
4544 5230 4.442401 TGGTATGCATCACCATGATCTT 57.558 40.909 18.44 0.00 41.17 2.40
4545 5231 4.139786 GTTGGTATGCATCACCATGATCT 58.860 43.478 21.25 0.00 45.32 2.75
4546 5232 3.058708 CGTTGGTATGCATCACCATGATC 60.059 47.826 21.25 13.97 45.32 2.92
4547 5233 2.880268 CGTTGGTATGCATCACCATGAT 59.120 45.455 21.25 0.00 45.32 2.45
4548 5234 2.093235 TCGTTGGTATGCATCACCATGA 60.093 45.455 21.25 19.02 45.32 3.07
4549 5235 2.287769 TCGTTGGTATGCATCACCATG 58.712 47.619 21.25 17.71 45.32 3.66
4550 5236 2.170397 TCTCGTTGGTATGCATCACCAT 59.830 45.455 21.25 0.00 45.32 3.55
4551 5237 1.552792 TCTCGTTGGTATGCATCACCA 59.447 47.619 18.44 18.44 44.35 4.17
4552 5238 2.205074 CTCTCGTTGGTATGCATCACC 58.795 52.381 0.19 10.27 36.54 4.02
4553 5239 2.205074 CCTCTCGTTGGTATGCATCAC 58.795 52.381 0.19 0.00 0.00 3.06
4554 5240 1.138859 CCCTCTCGTTGGTATGCATCA 59.861 52.381 0.19 0.00 0.00 3.07
4555 5241 1.541233 CCCCTCTCGTTGGTATGCATC 60.541 57.143 0.19 0.00 0.00 3.91
4556 5242 0.469917 CCCCTCTCGTTGGTATGCAT 59.530 55.000 3.79 3.79 0.00 3.96
4557 5243 0.616395 TCCCCTCTCGTTGGTATGCA 60.616 55.000 0.00 0.00 0.00 3.96
4558 5244 0.105039 CTCCCCTCTCGTTGGTATGC 59.895 60.000 0.00 0.00 0.00 3.14
4559 5245 1.683917 CTCTCCCCTCTCGTTGGTATG 59.316 57.143 0.00 0.00 0.00 2.39
4560 5246 1.288335 ACTCTCCCCTCTCGTTGGTAT 59.712 52.381 0.00 0.00 0.00 2.73
4561 5247 0.702902 ACTCTCCCCTCTCGTTGGTA 59.297 55.000 0.00 0.00 0.00 3.25
4562 5248 0.900647 CACTCTCCCCTCTCGTTGGT 60.901 60.000 0.00 0.00 0.00 3.67
4563 5249 0.900647 ACACTCTCCCCTCTCGTTGG 60.901 60.000 0.00 0.00 0.00 3.77
4564 5250 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
4565 5251 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
4566 5252 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
4567 5253 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
4568 5254 0.899019 GGACAACACTCTCCCCTCTC 59.101 60.000 0.00 0.00 0.00 3.20
4569 5255 0.191064 TGGACAACACTCTCCCCTCT 59.809 55.000 0.00 0.00 0.00 3.69
4570 5256 0.321996 GTGGACAACACTCTCCCCTC 59.678 60.000 0.00 0.00 46.72 4.30
4571 5257 2.453242 GTGGACAACACTCTCCCCT 58.547 57.895 0.00 0.00 46.72 4.79
4579 5265 1.068055 ACGAGGATACGTGGACAACAC 60.068 52.381 0.00 0.00 44.84 3.32
4580 5266 1.250328 ACGAGGATACGTGGACAACA 58.750 50.000 0.00 0.00 44.84 3.33
4581 5267 2.679837 TCTACGAGGATACGTGGACAAC 59.320 50.000 0.00 0.00 45.53 3.32
4582 5268 2.989909 TCTACGAGGATACGTGGACAA 58.010 47.619 0.00 0.00 45.53 3.18
4583 5269 2.696989 TCTACGAGGATACGTGGACA 57.303 50.000 0.00 0.00 45.53 4.02
4604 5290 1.058903 GCTAACGCTTCCGCTTTCG 59.941 57.895 0.00 0.00 38.22 3.46
4605 5291 0.179222 GTGCTAACGCTTCCGCTTTC 60.179 55.000 0.00 0.00 38.22 2.62
4606 5292 0.882927 TGTGCTAACGCTTCCGCTTT 60.883 50.000 0.00 0.00 38.22 3.51
4607 5293 0.882927 TTGTGCTAACGCTTCCGCTT 60.883 50.000 0.00 0.00 38.22 4.68
4608 5294 1.301401 TTGTGCTAACGCTTCCGCT 60.301 52.632 0.00 0.00 38.22 5.52
4609 5295 1.154469 GTTGTGCTAACGCTTCCGC 60.154 57.895 0.00 0.00 38.22 5.54
4610 5296 1.129809 CGTTGTGCTAACGCTTCCG 59.870 57.895 12.46 0.00 36.82 4.30
4616 5302 1.438059 CAACCGCGTTGTGCTAACG 60.438 57.895 18.25 18.25 45.56 3.18
4617 5303 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
4618 5304 0.515127 CATCAACCGCGTTGTGCTAA 59.485 50.000 16.97 2.99 43.23 3.09
4619 5305 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
4620 5306 0.601576 TACATCAACCGCGTTGTGCT 60.602 50.000 16.97 6.88 43.23 4.40
4621 5307 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
4622 5308 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
4623 5309 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
4624 5310 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
4625 5311 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
4626 5312 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
4627 5313 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
4628 5314 2.267188 TGTACGACTACATCAACCGC 57.733 50.000 0.00 0.00 0.00 5.68
4642 5328 2.373269 GTCGGATCGTGAAGATGTACG 58.627 52.381 0.00 0.00 40.26 3.67
4643 5329 2.728922 GGTCGGATCGTGAAGATGTAC 58.271 52.381 0.00 0.00 40.26 2.90
4644 5330 1.332686 CGGTCGGATCGTGAAGATGTA 59.667 52.381 1.71 0.00 40.26 2.29
4645 5331 0.100682 CGGTCGGATCGTGAAGATGT 59.899 55.000 1.71 0.00 40.26 3.06
4646 5332 0.380733 TCGGTCGGATCGTGAAGATG 59.619 55.000 10.85 0.00 40.26 2.90
4647 5333 1.267261 GATCGGTCGGATCGTGAAGAT 59.733 52.381 10.85 0.00 42.02 2.40
4648 5334 0.661552 GATCGGTCGGATCGTGAAGA 59.338 55.000 10.85 0.00 42.02 2.87
4649 5335 3.165559 GATCGGTCGGATCGTGAAG 57.834 57.895 10.85 0.00 42.02 3.02
4656 5342 1.540267 CGATACTTGGATCGGTCGGAT 59.460 52.381 7.31 0.00 43.99 4.18
4657 5343 0.949397 CGATACTTGGATCGGTCGGA 59.051 55.000 7.31 0.00 43.99 4.55
4658 5344 0.949397 TCGATACTTGGATCGGTCGG 59.051 55.000 14.31 0.00 46.93 4.79
4659 5345 2.382519 GTTCGATACTTGGATCGGTCG 58.617 52.381 14.31 0.00 46.93 4.79
4660 5346 2.382519 CGTTCGATACTTGGATCGGTC 58.617 52.381 14.31 7.64 46.93 4.79
4661 5347 1.535437 GCGTTCGATACTTGGATCGGT 60.535 52.381 14.31 0.00 46.93 4.69
4662 5348 1.129326 GCGTTCGATACTTGGATCGG 58.871 55.000 14.31 1.31 46.93 4.18
4664 5350 1.517276 CGTGCGTTCGATACTTGGATC 59.483 52.381 0.00 0.00 0.00 3.36
4665 5351 1.556564 CGTGCGTTCGATACTTGGAT 58.443 50.000 0.00 0.00 0.00 3.41
4666 5352 0.457166 CCGTGCGTTCGATACTTGGA 60.457 55.000 0.00 0.00 0.00 3.53
4667 5353 1.995991 CCGTGCGTTCGATACTTGG 59.004 57.895 0.00 0.00 0.00 3.61
4668 5354 1.343821 GCCGTGCGTTCGATACTTG 59.656 57.895 0.00 0.00 0.00 3.16
4669 5355 1.080366 TGCCGTGCGTTCGATACTT 60.080 52.632 0.00 0.00 0.00 2.24
4670 5356 1.804326 GTGCCGTGCGTTCGATACT 60.804 57.895 0.00 0.00 0.00 2.12
4671 5357 2.693285 GTGCCGTGCGTTCGATAC 59.307 61.111 0.00 0.00 0.00 2.24
4672 5358 2.507547 GGTGCCGTGCGTTCGATA 60.508 61.111 0.00 0.00 0.00 2.92
4673 5359 4.373116 AGGTGCCGTGCGTTCGAT 62.373 61.111 0.00 0.00 0.00 3.59
4684 5370 2.435059 GCTGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
4685 5371 2.029844 GTGCTGAACTCGGAGGTGC 61.030 63.158 10.23 4.15 0.00 5.01
4686 5372 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
4687 5373 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
4688 5374 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
4689 5375 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
4693 5379 0.233332 GCTGAACGTGTGCTGAACTC 59.767 55.000 0.00 0.00 0.00 3.01
4694 5380 0.179073 AGCTGAACGTGTGCTGAACT 60.179 50.000 8.99 0.00 35.54 3.01
4695 5381 0.233332 GAGCTGAACGTGTGCTGAAC 59.767 55.000 13.62 0.00 37.16 3.18
4696 5382 1.215014 CGAGCTGAACGTGTGCTGAA 61.215 55.000 13.62 0.00 37.16 3.02
4697 5383 1.661509 CGAGCTGAACGTGTGCTGA 60.662 57.895 13.62 0.00 37.16 4.26
4698 5384 1.010935 ATCGAGCTGAACGTGTGCTG 61.011 55.000 13.62 7.51 37.16 4.41
4699 5385 1.010935 CATCGAGCTGAACGTGTGCT 61.011 55.000 9.46 9.46 40.02 4.40
4700 5386 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
4701 5387 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
4702 5388 0.729478 CGTCATCGAGCTGAACGTGT 60.729 55.000 0.00 0.00 39.71 4.49
4703 5389 0.729478 ACGTCATCGAGCTGAACGTG 60.729 55.000 12.23 3.66 40.62 4.49
4704 5390 0.039437 AACGTCATCGAGCTGAACGT 60.039 50.000 0.00 0.45 40.62 3.99
4705 5391 0.635731 GAACGTCATCGAGCTGAACG 59.364 55.000 0.00 0.00 40.62 3.95
4706 5392 0.992802 GGAACGTCATCGAGCTGAAC 59.007 55.000 0.00 0.00 40.62 3.18
4707 5393 3.418675 GGAACGTCATCGAGCTGAA 57.581 52.632 0.00 0.00 40.62 3.02
4721 5407 1.877165 GGATCGGAGTTCGCGGAAC 60.877 63.158 6.13 9.79 42.25 3.62
4722 5408 1.879737 TTGGATCGGAGTTCGCGGAA 61.880 55.000 6.13 0.00 39.05 4.30
4723 5409 2.344981 TTGGATCGGAGTTCGCGGA 61.345 57.895 6.13 0.00 39.05 5.54
4724 5410 2.165301 GTTGGATCGGAGTTCGCGG 61.165 63.158 6.13 0.00 39.05 6.46
4725 5411 1.413767 CTGTTGGATCGGAGTTCGCG 61.414 60.000 0.00 0.00 39.05 5.87
4726 5412 0.108804 TCTGTTGGATCGGAGTTCGC 60.109 55.000 0.00 0.00 39.05 4.70
4727 5413 1.914634 CTCTGTTGGATCGGAGTTCG 58.085 55.000 0.00 0.00 36.43 3.95
4728 5414 1.205893 AGCTCTGTTGGATCGGAGTTC 59.794 52.381 0.00 0.00 41.39 3.01
4729 5415 1.270907 AGCTCTGTTGGATCGGAGTT 58.729 50.000 0.00 0.00 41.39 3.01
4730 5416 1.205893 GAAGCTCTGTTGGATCGGAGT 59.794 52.381 0.00 0.00 41.39 3.85
4731 5417 1.205655 TGAAGCTCTGTTGGATCGGAG 59.794 52.381 0.00 0.00 42.02 4.63
4732 5418 1.066858 GTGAAGCTCTGTTGGATCGGA 60.067 52.381 0.00 0.00 0.00 4.55
4733 5419 1.363744 GTGAAGCTCTGTTGGATCGG 58.636 55.000 0.00 0.00 0.00 4.18
4734 5420 0.994995 CGTGAAGCTCTGTTGGATCG 59.005 55.000 0.00 0.00 0.00 3.69
4735 5421 1.363744 CCGTGAAGCTCTGTTGGATC 58.636 55.000 0.00 0.00 0.00 3.36
4736 5422 0.036010 CCCGTGAAGCTCTGTTGGAT 60.036 55.000 0.00 0.00 0.00 3.41
4737 5423 1.118965 TCCCGTGAAGCTCTGTTGGA 61.119 55.000 0.00 0.00 0.00 3.53
4738 5424 0.671781 CTCCCGTGAAGCTCTGTTGG 60.672 60.000 0.00 0.00 0.00 3.77
4739 5425 0.318441 TCTCCCGTGAAGCTCTGTTG 59.682 55.000 0.00 0.00 0.00 3.33
4740 5426 0.605589 CTCTCCCGTGAAGCTCTGTT 59.394 55.000 0.00 0.00 0.00 3.16
4741 5427 0.540830 ACTCTCCCGTGAAGCTCTGT 60.541 55.000 0.00 0.00 0.00 3.41
4742 5428 0.605589 AACTCTCCCGTGAAGCTCTG 59.394 55.000 0.00 0.00 0.00 3.35
4743 5429 0.892063 GAACTCTCCCGTGAAGCTCT 59.108 55.000 0.00 0.00 0.00 4.09
4744 5430 0.108567 GGAACTCTCCCGTGAAGCTC 60.109 60.000 0.00 0.00 35.42 4.09
4745 5431 1.878656 CGGAACTCTCCCGTGAAGCT 61.879 60.000 0.00 0.00 41.91 3.74
4746 5432 1.446272 CGGAACTCTCCCGTGAAGC 60.446 63.158 0.00 0.00 41.91 3.86
4747 5433 4.891566 CGGAACTCTCCCGTGAAG 57.108 61.111 0.00 0.00 41.91 3.02
4753 5439 1.079750 GTGCTGACGGAACTCTCCC 60.080 63.158 0.00 0.00 38.71 4.30
4754 5440 1.444553 CGTGCTGACGGAACTCTCC 60.445 63.158 0.00 0.00 42.18 3.71
4755 5441 1.579932 TCGTGCTGACGGAACTCTC 59.420 57.895 0.00 0.00 46.11 3.20
4756 5442 3.759544 TCGTGCTGACGGAACTCT 58.240 55.556 0.00 0.00 46.11 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.