Multiple sequence alignment - TraesCS7A01G207400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G207400 chr7A 100.000 3173 0 0 1 3173 170187327 170190499 0.000000e+00 5860.0
1 TraesCS7A01G207400 chr7A 83.699 319 44 8 1 313 134623054 134623370 8.610000e-76 294.0
2 TraesCS7A01G207400 chr7A 82.609 138 22 2 641 778 4577996 4578131 1.550000e-23 121.0
3 TraesCS7A01G207400 chr7A 80.000 130 19 2 387 510 546047805 546047677 4.360000e-14 89.8
4 TraesCS7A01G207400 chr7A 91.667 48 2 2 463 509 391894862 391894908 7.350000e-07 65.8
5 TraesCS7A01G207400 chr7B 96.111 2314 61 7 878 3173 133242431 133244733 0.000000e+00 3747.0
6 TraesCS7A01G207400 chr7B 84.564 298 41 4 1 293 431383963 431384260 1.110000e-74 291.0
7 TraesCS7A01G207400 chr7B 94.545 55 3 0 794 848 133242388 133242442 5.640000e-13 86.1
8 TraesCS7A01G207400 chr7D 96.554 1480 39 2 878 2348 168066420 168067896 0.000000e+00 2440.0
9 TraesCS7A01G207400 chr7D 94.010 818 28 2 2377 3173 168067897 168068714 0.000000e+00 1219.0
10 TraesCS7A01G207400 chr7D 95.556 45 2 0 732 776 86077254 86077298 4.390000e-09 73.1
11 TraesCS7A01G207400 chr7D 93.478 46 3 0 732 777 132740730 132740775 5.680000e-08 69.4
12 TraesCS7A01G207400 chr5D 86.469 303 37 4 1 300 513910612 513910311 2.360000e-86 329.0
13 TraesCS7A01G207400 chr3D 85.342 307 37 7 1 302 397957327 397957630 8.550000e-81 311.0
14 TraesCS7A01G207400 chr3D 82.915 199 34 0 2549 2747 587422421 587422223 2.510000e-41 180.0
15 TraesCS7A01G207400 chr3D 82.558 86 12 2 416 500 568195327 568195244 4.390000e-09 73.1
16 TraesCS7A01G207400 chr3D 89.091 55 2 3 358 408 138884256 138884310 7.350000e-07 65.8
17 TraesCS7A01G207400 chr4D 85.294 306 37 7 3 302 10966900 10966597 3.070000e-80 309.0
18 TraesCS7A01G207400 chr2A 87.273 275 29 5 1 271 752464903 752464631 3.070000e-80 309.0
19 TraesCS7A01G207400 chr1B 80.723 415 52 16 11 402 297469716 297469307 6.650000e-77 298.0
20 TraesCS7A01G207400 chr3B 84.091 308 41 7 1 302 823588429 823588734 1.110000e-74 291.0
21 TraesCS7A01G207400 chr3B 84.000 200 30 2 2549 2747 784455602 784455404 1.160000e-44 191.0
22 TraesCS7A01G207400 chr3B 84.000 200 30 2 2549 2747 784526739 784526541 1.160000e-44 191.0
23 TraesCS7A01G207400 chr3B 81.106 217 36 2 1057 1268 784455975 784455759 5.440000e-38 169.0
24 TraesCS7A01G207400 chr3B 86.842 76 10 0 2958 3033 784455189 784455114 5.640000e-13 86.1
25 TraesCS7A01G207400 chr3B 86.842 76 10 0 2958 3033 784526326 784526251 5.640000e-13 86.1
26 TraesCS7A01G207400 chr5B 83.596 317 43 9 1 312 600674265 600674577 4.000000e-74 289.0
27 TraesCS7A01G207400 chr5B 79.259 135 22 3 647 777 660151517 660151385 4.360000e-14 89.8
28 TraesCS7A01G207400 chr5B 89.286 56 3 3 354 406 621514404 621514459 2.040000e-07 67.6
29 TraesCS7A01G207400 chr2D 85.385 130 17 2 648 776 528620009 528620137 1.990000e-27 134.0
30 TraesCS7A01G207400 chr2D 91.837 49 4 0 358 406 14843280 14843232 5.680000e-08 69.4
31 TraesCS7A01G207400 chr3A 83.465 127 18 3 651 776 19911231 19911355 7.190000e-22 115.0
32 TraesCS7A01G207400 chr6B 75.862 232 45 8 549 778 444739467 444739245 1.200000e-19 108.0
33 TraesCS7A01G207400 chr6A 78.488 172 32 3 612 779 505434574 505434404 1.200000e-19 108.0
34 TraesCS7A01G207400 chr5A 86.364 66 8 1 709 774 440705198 440705134 1.580000e-08 71.3
35 TraesCS7A01G207400 chr4B 85.294 68 10 0 443 510 375376819 375376752 1.580000e-08 71.3
36 TraesCS7A01G207400 chr2B 80.233 86 16 1 415 500 244883923 244884007 2.640000e-06 63.9
37 TraesCS7A01G207400 chr2B 92.308 39 2 1 473 510 96631661 96631623 2.000000e-03 54.7
38 TraesCS7A01G207400 chr6D 89.583 48 3 2 354 401 4809020 4809065 3.420000e-05 60.2
39 TraesCS7A01G207400 chr4A 85.455 55 6 1 473 527 554919622 554919570 4.420000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G207400 chr7A 170187327 170190499 3172 False 5860.00 5860 100.000 1 3173 1 chr7A.!!$F3 3172
1 TraesCS7A01G207400 chr7B 133242388 133244733 2345 False 1916.55 3747 95.328 794 3173 2 chr7B.!!$F2 2379
2 TraesCS7A01G207400 chr7D 168066420 168068714 2294 False 1829.50 2440 95.282 878 3173 2 chr7D.!!$F3 2295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 476 0.031994 AACAAAGCCGTGCCATTCAC 59.968 50.0 0.0 0.0 42.23 3.18 F
484 485 0.313672 GTGCCATTCACGGAAGCAAA 59.686 50.0 0.0 0.0 35.76 3.68 F
1940 1950 0.103937 GAGCTGAGGGTGAAGGATCG 59.896 60.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 1950 0.610232 ATCCTTTGCTGCCACCACTC 60.610 55.0 0.0 0.0 0.00 3.51 R
2007 2017 0.865111 CCAAATTCACAGCACGTCGA 59.135 50.0 0.0 0.0 0.00 4.20 R
2980 3012 2.902705 AGTGCTTACGTGAGGACAAA 57.097 45.0 28.8 0.0 40.08 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.786826 ATTTTATCTCTTAAATCGTGTGTCCA 57.213 30.769 0.00 0.00 30.03 4.02
48 49 8.610248 TTTTATCTCTTAAATCGTGTGTCCAA 57.390 30.769 0.00 0.00 30.03 3.53
49 50 8.610248 TTTATCTCTTAAATCGTGTGTCCAAA 57.390 30.769 0.00 0.00 0.00 3.28
50 51 8.786826 TTATCTCTTAAATCGTGTGTCCAAAT 57.213 30.769 0.00 0.00 0.00 2.32
51 52 6.721571 TCTCTTAAATCGTGTGTCCAAATC 57.278 37.500 0.00 0.00 0.00 2.17
52 53 6.464222 TCTCTTAAATCGTGTGTCCAAATCT 58.536 36.000 0.00 0.00 0.00 2.40
53 54 6.934645 TCTCTTAAATCGTGTGTCCAAATCTT 59.065 34.615 0.00 0.00 0.00 2.40
54 55 6.898041 TCTTAAATCGTGTGTCCAAATCTTG 58.102 36.000 0.00 0.00 0.00 3.02
55 56 6.708502 TCTTAAATCGTGTGTCCAAATCTTGA 59.291 34.615 0.00 0.00 0.00 3.02
56 57 5.766150 AAATCGTGTGTCCAAATCTTGAA 57.234 34.783 0.00 0.00 0.00 2.69
57 58 4.749245 ATCGTGTGTCCAAATCTTGAAC 57.251 40.909 0.00 0.00 0.00 3.18
58 59 2.875933 TCGTGTGTCCAAATCTTGAACC 59.124 45.455 0.00 0.00 0.00 3.62
59 60 2.349438 CGTGTGTCCAAATCTTGAACCG 60.349 50.000 0.00 0.00 0.00 4.44
60 61 2.616842 GTGTGTCCAAATCTTGAACCGT 59.383 45.455 0.00 0.00 0.00 4.83
61 62 3.066203 GTGTGTCCAAATCTTGAACCGTT 59.934 43.478 0.00 0.00 0.00 4.44
62 63 3.697045 TGTGTCCAAATCTTGAACCGTTT 59.303 39.130 0.00 0.00 0.00 3.60
63 64 4.158764 TGTGTCCAAATCTTGAACCGTTTT 59.841 37.500 0.00 0.00 0.00 2.43
64 65 4.738252 GTGTCCAAATCTTGAACCGTTTTC 59.262 41.667 0.00 0.00 0.00 2.29
65 66 4.399618 TGTCCAAATCTTGAACCGTTTTCA 59.600 37.500 0.00 0.00 0.00 2.69
66 67 5.068460 TGTCCAAATCTTGAACCGTTTTCAT 59.932 36.000 0.00 0.00 0.00 2.57
67 68 5.629435 GTCCAAATCTTGAACCGTTTTCATC 59.371 40.000 0.00 0.00 0.00 2.92
68 69 4.616802 CCAAATCTTGAACCGTTTTCATCG 59.383 41.667 0.00 0.00 0.00 3.84
69 70 5.212194 CAAATCTTGAACCGTTTTCATCGT 58.788 37.500 0.00 0.00 0.00 3.73
70 71 5.432885 AATCTTGAACCGTTTTCATCGTT 57.567 34.783 0.00 0.00 0.00 3.85
71 72 4.203950 TCTTGAACCGTTTTCATCGTTG 57.796 40.909 0.00 0.00 0.00 4.10
72 73 3.002862 TCTTGAACCGTTTTCATCGTTGG 59.997 43.478 0.00 0.00 0.00 3.77
73 74 2.562635 TGAACCGTTTTCATCGTTGGA 58.437 42.857 0.00 0.00 0.00 3.53
74 75 3.142951 TGAACCGTTTTCATCGTTGGAT 58.857 40.909 0.00 0.00 0.00 3.41
75 76 3.566322 TGAACCGTTTTCATCGTTGGATT 59.434 39.130 0.00 0.00 0.00 3.01
76 77 3.824414 ACCGTTTTCATCGTTGGATTC 57.176 42.857 0.00 0.00 0.00 2.52
77 78 2.486592 ACCGTTTTCATCGTTGGATTCC 59.513 45.455 0.00 0.00 0.00 3.01
78 79 2.159435 CCGTTTTCATCGTTGGATTCCC 60.159 50.000 0.00 0.00 0.00 3.97
79 80 2.159435 CGTTTTCATCGTTGGATTCCCC 60.159 50.000 0.00 0.00 0.00 4.81
80 81 1.745232 TTTCATCGTTGGATTCCCCG 58.255 50.000 0.00 2.93 37.93 5.73
81 82 0.746563 TTCATCGTTGGATTCCCCGC 60.747 55.000 0.00 0.00 37.93 6.13
82 83 2.203015 ATCGTTGGATTCCCCGCG 60.203 61.111 0.00 0.00 37.93 6.46
83 84 3.026431 ATCGTTGGATTCCCCGCGT 62.026 57.895 4.92 0.00 37.27 6.01
84 85 2.530958 ATCGTTGGATTCCCCGCGTT 62.531 55.000 4.92 0.00 37.27 4.84
85 86 2.874751 GTTGGATTCCCCGCGTTG 59.125 61.111 4.92 0.00 37.93 4.10
86 87 1.673009 GTTGGATTCCCCGCGTTGA 60.673 57.895 4.92 0.00 37.93 3.18
87 88 1.376683 TTGGATTCCCCGCGTTGAG 60.377 57.895 4.92 0.00 37.93 3.02
88 89 1.832719 TTGGATTCCCCGCGTTGAGA 61.833 55.000 4.92 0.00 37.93 3.27
89 90 1.146263 GGATTCCCCGCGTTGAGAT 59.854 57.895 4.92 0.00 0.00 2.75
90 91 0.880718 GGATTCCCCGCGTTGAGATC 60.881 60.000 4.92 6.97 0.00 2.75
91 92 0.105039 GATTCCCCGCGTTGAGATCT 59.895 55.000 4.92 0.00 0.00 2.75
92 93 0.541863 ATTCCCCGCGTTGAGATCTT 59.458 50.000 4.92 0.00 0.00 2.40
93 94 0.108329 TTCCCCGCGTTGAGATCTTC 60.108 55.000 4.92 0.00 0.00 2.87
94 95 1.218047 CCCCGCGTTGAGATCTTCA 59.782 57.895 4.92 0.00 0.00 3.02
95 96 0.391130 CCCCGCGTTGAGATCTTCAA 60.391 55.000 4.92 0.00 43.40 2.69
96 97 1.438651 CCCGCGTTGAGATCTTCAAA 58.561 50.000 4.92 0.00 46.85 2.69
97 98 1.804151 CCCGCGTTGAGATCTTCAAAA 59.196 47.619 4.92 0.00 46.85 2.44
98 99 2.412847 CCCGCGTTGAGATCTTCAAAAC 60.413 50.000 4.92 0.00 46.85 2.43
99 100 2.480419 CCGCGTTGAGATCTTCAAAACT 59.520 45.455 4.92 0.00 46.85 2.66
100 101 3.678072 CCGCGTTGAGATCTTCAAAACTA 59.322 43.478 4.92 0.00 46.85 2.24
101 102 4.201628 CCGCGTTGAGATCTTCAAAACTAG 60.202 45.833 4.92 0.00 46.85 2.57
102 103 4.621460 CGCGTTGAGATCTTCAAAACTAGA 59.379 41.667 0.00 0.00 46.85 2.43
103 104 5.289675 CGCGTTGAGATCTTCAAAACTAGAT 59.710 40.000 0.00 0.00 46.85 1.98
104 105 6.183360 CGCGTTGAGATCTTCAAAACTAGATT 60.183 38.462 0.00 0.00 46.85 2.40
105 106 7.176741 GCGTTGAGATCTTCAAAACTAGATTC 58.823 38.462 0.00 0.00 46.85 2.52
106 107 7.675170 GCGTTGAGATCTTCAAAACTAGATTCC 60.675 40.741 0.00 0.00 46.85 3.01
107 108 7.331934 CGTTGAGATCTTCAAAACTAGATTCCA 59.668 37.037 0.00 0.00 46.85 3.53
108 109 9.171877 GTTGAGATCTTCAAAACTAGATTCCAT 57.828 33.333 0.00 0.00 46.85 3.41
109 110 8.728337 TGAGATCTTCAAAACTAGATTCCATG 57.272 34.615 0.00 0.00 31.34 3.66
110 111 8.324306 TGAGATCTTCAAAACTAGATTCCATGT 58.676 33.333 0.00 0.00 31.34 3.21
111 112 9.171877 GAGATCTTCAAAACTAGATTCCATGTT 57.828 33.333 0.00 0.00 0.00 2.71
112 113 8.954350 AGATCTTCAAAACTAGATTCCATGTTG 58.046 33.333 0.00 0.00 0.00 3.33
113 114 8.868522 ATCTTCAAAACTAGATTCCATGTTGA 57.131 30.769 0.00 0.00 0.00 3.18
114 115 8.868522 TCTTCAAAACTAGATTCCATGTTGAT 57.131 30.769 0.00 0.00 0.00 2.57
115 116 9.958180 TCTTCAAAACTAGATTCCATGTTGATA 57.042 29.630 0.00 0.00 0.00 2.15
117 118 9.958180 TTCAAAACTAGATTCCATGTTGATAGA 57.042 29.630 0.00 0.00 0.00 1.98
125 126 7.923888 AGATTCCATGTTGATAGATTTTGACG 58.076 34.615 0.00 0.00 0.00 4.35
126 127 6.435430 TTCCATGTTGATAGATTTTGACGG 57.565 37.500 0.00 0.00 0.00 4.79
127 128 5.739959 TCCATGTTGATAGATTTTGACGGA 58.260 37.500 0.00 0.00 0.00 4.69
128 129 6.356556 TCCATGTTGATAGATTTTGACGGAT 58.643 36.000 0.00 0.00 0.00 4.18
129 130 6.828273 TCCATGTTGATAGATTTTGACGGATT 59.172 34.615 0.00 0.00 0.00 3.01
130 131 7.339212 TCCATGTTGATAGATTTTGACGGATTT 59.661 33.333 0.00 0.00 0.00 2.17
131 132 7.975616 CCATGTTGATAGATTTTGACGGATTTT 59.024 33.333 0.00 0.00 0.00 1.82
132 133 9.357652 CATGTTGATAGATTTTGACGGATTTTT 57.642 29.630 0.00 0.00 0.00 1.94
171 172 2.863401 AAAAACTGAACCGGAAGCAC 57.137 45.000 9.46 0.00 0.00 4.40
172 173 2.052782 AAAACTGAACCGGAAGCACT 57.947 45.000 9.46 0.00 0.00 4.40
173 174 1.308998 AAACTGAACCGGAAGCACTG 58.691 50.000 9.46 1.15 0.00 3.66
174 175 0.180406 AACTGAACCGGAAGCACTGT 59.820 50.000 9.46 1.79 0.00 3.55
175 176 0.180406 ACTGAACCGGAAGCACTGTT 59.820 50.000 9.46 0.00 0.00 3.16
176 177 1.308998 CTGAACCGGAAGCACTGTTT 58.691 50.000 9.46 0.00 0.00 2.83
177 178 1.002468 CTGAACCGGAAGCACTGTTTG 60.002 52.381 9.46 0.00 0.00 2.93
178 179 1.021968 GAACCGGAAGCACTGTTTGT 58.978 50.000 9.46 0.00 0.00 2.83
179 180 1.404035 GAACCGGAAGCACTGTTTGTT 59.596 47.619 9.46 0.00 0.00 2.83
180 181 1.021968 ACCGGAAGCACTGTTTGTTC 58.978 50.000 9.46 0.00 0.00 3.18
181 182 0.310854 CCGGAAGCACTGTTTGTTCC 59.689 55.000 0.00 3.51 34.51 3.62
182 183 0.310854 CGGAAGCACTGTTTGTTCCC 59.689 55.000 6.89 0.00 34.42 3.97
183 184 1.692411 GGAAGCACTGTTTGTTCCCT 58.308 50.000 0.00 0.00 32.99 4.20
184 185 2.031870 GGAAGCACTGTTTGTTCCCTT 58.968 47.619 0.00 0.00 32.99 3.95
185 186 2.430694 GGAAGCACTGTTTGTTCCCTTT 59.569 45.455 0.00 0.00 32.99 3.11
186 187 3.490933 GGAAGCACTGTTTGTTCCCTTTC 60.491 47.826 0.00 0.00 32.99 2.62
187 188 2.031870 AGCACTGTTTGTTCCCTTTCC 58.968 47.619 0.00 0.00 0.00 3.13
188 189 1.754226 GCACTGTTTGTTCCCTTTCCA 59.246 47.619 0.00 0.00 0.00 3.53
189 190 2.167487 GCACTGTTTGTTCCCTTTCCAA 59.833 45.455 0.00 0.00 0.00 3.53
190 191 3.368948 GCACTGTTTGTTCCCTTTCCAAA 60.369 43.478 0.00 0.00 0.00 3.28
191 192 4.826556 CACTGTTTGTTCCCTTTCCAAAA 58.173 39.130 0.00 0.00 30.57 2.44
192 193 4.869861 CACTGTTTGTTCCCTTTCCAAAAG 59.130 41.667 0.00 0.00 30.57 2.27
193 194 4.775253 ACTGTTTGTTCCCTTTCCAAAAGA 59.225 37.500 1.06 0.00 30.57 2.52
194 195 5.105351 ACTGTTTGTTCCCTTTCCAAAAGAG 60.105 40.000 1.06 0.00 30.57 2.85
195 196 4.161377 TGTTTGTTCCCTTTCCAAAAGAGG 59.839 41.667 1.06 1.84 30.57 3.69
196 197 2.316108 TGTTCCCTTTCCAAAAGAGGC 58.684 47.619 1.06 0.00 0.00 4.70
197 198 2.316108 GTTCCCTTTCCAAAAGAGGCA 58.684 47.619 1.06 0.00 0.00 4.75
198 199 1.995376 TCCCTTTCCAAAAGAGGCAC 58.005 50.000 1.06 0.00 0.00 5.01
199 200 0.598065 CCCTTTCCAAAAGAGGCACG 59.402 55.000 1.06 0.00 0.00 5.34
200 201 0.598065 CCTTTCCAAAAGAGGCACGG 59.402 55.000 1.06 0.00 0.00 4.94
201 202 1.318576 CTTTCCAAAAGAGGCACGGT 58.681 50.000 0.00 0.00 0.00 4.83
202 203 1.266989 CTTTCCAAAAGAGGCACGGTC 59.733 52.381 0.00 0.00 0.00 4.79
203 204 0.882927 TTCCAAAAGAGGCACGGTCG 60.883 55.000 0.00 0.00 0.00 4.79
204 205 1.597027 CCAAAAGAGGCACGGTCGT 60.597 57.895 0.00 0.00 0.00 4.34
213 214 3.414700 CACGGTCGTGCCTCTTGC 61.415 66.667 10.59 0.00 39.39 4.01
215 216 4.717629 CGGTCGTGCCTCTTGCGA 62.718 66.667 0.00 0.00 45.60 5.10
216 217 2.357034 GGTCGTGCCTCTTGCGAA 60.357 61.111 0.00 0.00 45.60 4.70
217 218 1.959226 GGTCGTGCCTCTTGCGAAA 60.959 57.895 0.00 0.00 45.60 3.46
218 219 1.493311 GTCGTGCCTCTTGCGAAAG 59.507 57.895 0.00 0.00 45.60 2.62
236 237 3.084579 CACAATCGTGCCTCTCGC 58.915 61.111 0.00 0.00 36.06 5.03
258 259 3.902234 GCAAAACCGTGCAACTCG 58.098 55.556 0.00 0.00 44.29 4.18
259 260 2.292916 GCAAAACCGTGCAACTCGC 61.293 57.895 0.00 0.00 44.29 5.03
260 261 2.003443 CAAAACCGTGCAACTCGCG 61.003 57.895 0.00 0.00 46.97 5.87
265 266 2.733218 CGTGCAACTCGCGGAAGA 60.733 61.111 6.13 0.00 46.97 2.87
266 267 2.307309 CGTGCAACTCGCGGAAGAA 61.307 57.895 6.13 0.00 46.97 2.52
267 268 1.827315 CGTGCAACTCGCGGAAGAAA 61.827 55.000 6.13 0.00 46.97 2.52
268 269 0.306533 GTGCAACTCGCGGAAGAAAA 59.693 50.000 6.13 0.00 46.97 2.29
269 270 1.018148 TGCAACTCGCGGAAGAAAAA 58.982 45.000 6.13 0.00 46.97 1.94
334 335 3.193471 AAAAACCATGCCTTTCGCG 57.807 47.368 0.00 0.00 42.08 5.87
335 336 0.319469 AAAAACCATGCCTTTCGCGG 60.319 50.000 6.13 0.00 42.08 6.46
336 337 1.175983 AAAACCATGCCTTTCGCGGA 61.176 50.000 6.13 0.00 42.08 5.54
337 338 1.175983 AAACCATGCCTTTCGCGGAA 61.176 50.000 6.13 1.53 42.08 4.30
338 339 1.586154 AACCATGCCTTTCGCGGAAG 61.586 55.000 20.64 20.64 42.08 3.46
339 340 1.745115 CCATGCCTTTCGCGGAAGA 60.745 57.895 28.73 10.04 42.08 2.87
340 341 1.305219 CCATGCCTTTCGCGGAAGAA 61.305 55.000 28.73 16.20 42.08 2.52
341 342 0.521291 CATGCCTTTCGCGGAAGAAA 59.479 50.000 28.73 15.83 42.08 2.52
342 343 1.068610 CATGCCTTTCGCGGAAGAAAA 60.069 47.619 28.73 13.27 42.08 2.29
343 344 1.025812 TGCCTTTCGCGGAAGAAAAA 58.974 45.000 28.73 8.47 42.08 1.94
384 385 4.609691 TTTTGTTTCCAAGAGACACGAC 57.390 40.909 0.00 0.00 0.00 4.34
385 386 3.536956 TTGTTTCCAAGAGACACGACT 57.463 42.857 0.00 0.00 0.00 4.18
386 387 2.821546 TGTTTCCAAGAGACACGACTG 58.178 47.619 0.00 0.00 0.00 3.51
387 388 2.167693 TGTTTCCAAGAGACACGACTGT 59.832 45.455 0.00 0.00 0.00 3.55
396 397 2.807045 CACGACTGTGCCTCTCGC 60.807 66.667 0.00 0.00 39.67 5.03
397 398 4.406173 ACGACTGTGCCTCTCGCG 62.406 66.667 0.00 0.00 42.08 5.87
399 400 3.749064 GACTGTGCCTCTCGCGGA 61.749 66.667 6.13 1.01 42.08 5.54
400 401 3.282745 GACTGTGCCTCTCGCGGAA 62.283 63.158 6.13 0.00 42.08 4.30
401 402 2.507992 CTGTGCCTCTCGCGGAAG 60.508 66.667 6.13 3.71 42.08 3.46
402 403 2.989253 TGTGCCTCTCGCGGAAGA 60.989 61.111 6.13 0.90 42.08 2.87
403 404 2.261671 GTGCCTCTCGCGGAAGAA 59.738 61.111 6.13 0.00 42.08 2.52
404 405 1.374252 GTGCCTCTCGCGGAAGAAA 60.374 57.895 6.13 0.00 42.08 2.52
405 406 0.949105 GTGCCTCTCGCGGAAGAAAA 60.949 55.000 6.13 0.00 42.08 2.29
406 407 0.250124 TGCCTCTCGCGGAAGAAAAA 60.250 50.000 6.13 0.00 42.08 1.94
439 440 6.409524 TTTTCCATTTTCTGAGAAGCATGT 57.590 33.333 12.67 0.00 0.00 3.21
440 441 6.409524 TTTCCATTTTCTGAGAAGCATGTT 57.590 33.333 12.67 0.00 0.00 2.71
441 442 6.409524 TTCCATTTTCTGAGAAGCATGTTT 57.590 33.333 12.67 0.00 0.00 2.83
442 443 5.775686 TCCATTTTCTGAGAAGCATGTTTG 58.224 37.500 0.00 2.34 0.00 2.93
443 444 5.302568 TCCATTTTCTGAGAAGCATGTTTGT 59.697 36.000 0.00 0.00 0.00 2.83
444 445 5.404366 CCATTTTCTGAGAAGCATGTTTGTG 59.596 40.000 0.00 0.00 0.00 3.33
445 446 3.631145 TTCTGAGAAGCATGTTTGTGC 57.369 42.857 0.00 0.00 45.38 4.57
446 447 1.881973 TCTGAGAAGCATGTTTGTGCC 59.118 47.619 0.00 0.00 46.19 5.01
447 448 1.884579 CTGAGAAGCATGTTTGTGCCT 59.115 47.619 0.00 0.00 46.19 4.75
448 449 1.881973 TGAGAAGCATGTTTGTGCCTC 59.118 47.619 0.00 0.76 46.19 4.70
449 450 2.157738 GAGAAGCATGTTTGTGCCTCT 58.842 47.619 0.00 0.01 45.86 3.69
450 451 2.157738 AGAAGCATGTTTGTGCCTCTC 58.842 47.619 0.00 0.00 40.88 3.20
451 452 0.877071 AAGCATGTTTGTGCCTCTCG 59.123 50.000 0.00 0.00 46.19 4.04
452 453 0.250467 AGCATGTTTGTGCCTCTCGT 60.250 50.000 0.00 0.00 46.19 4.18
453 454 1.001974 AGCATGTTTGTGCCTCTCGTA 59.998 47.619 0.00 0.00 46.19 3.43
454 455 1.804151 GCATGTTTGTGCCTCTCGTAA 59.196 47.619 0.00 0.00 39.18 3.18
455 456 2.225491 GCATGTTTGTGCCTCTCGTAAA 59.775 45.455 0.00 0.00 39.18 2.01
456 457 3.304391 GCATGTTTGTGCCTCTCGTAAAA 60.304 43.478 0.00 0.00 39.18 1.52
457 458 4.791411 GCATGTTTGTGCCTCTCGTAAAAA 60.791 41.667 0.00 0.00 39.18 1.94
458 459 4.281525 TGTTTGTGCCTCTCGTAAAAAC 57.718 40.909 0.00 0.00 0.00 2.43
459 460 3.690139 TGTTTGTGCCTCTCGTAAAAACA 59.310 39.130 0.00 0.00 34.62 2.83
460 461 4.156190 TGTTTGTGCCTCTCGTAAAAACAA 59.844 37.500 0.00 0.00 34.22 2.83
461 462 4.966965 TTGTGCCTCTCGTAAAAACAAA 57.033 36.364 0.00 0.00 0.00 2.83
462 463 4.545823 TGTGCCTCTCGTAAAAACAAAG 57.454 40.909 0.00 0.00 0.00 2.77
463 464 3.242936 TGTGCCTCTCGTAAAAACAAAGC 60.243 43.478 0.00 0.00 0.00 3.51
464 465 2.292292 TGCCTCTCGTAAAAACAAAGCC 59.708 45.455 0.00 0.00 0.00 4.35
465 466 2.664698 GCCTCTCGTAAAAACAAAGCCG 60.665 50.000 0.00 0.00 0.00 5.52
466 467 2.546789 CCTCTCGTAAAAACAAAGCCGT 59.453 45.455 0.00 0.00 0.00 5.68
467 468 3.541711 CTCTCGTAAAAACAAAGCCGTG 58.458 45.455 0.00 0.00 0.00 4.94
468 469 2.041244 CTCGTAAAAACAAAGCCGTGC 58.959 47.619 0.00 0.00 0.00 5.34
469 470 1.125270 CGTAAAAACAAAGCCGTGCC 58.875 50.000 0.00 0.00 0.00 5.01
470 471 1.534175 CGTAAAAACAAAGCCGTGCCA 60.534 47.619 0.00 0.00 0.00 4.92
471 472 2.749776 GTAAAAACAAAGCCGTGCCAT 58.250 42.857 0.00 0.00 0.00 4.40
472 473 2.323968 AAAAACAAAGCCGTGCCATT 57.676 40.000 0.00 0.00 0.00 3.16
473 474 1.864565 AAAACAAAGCCGTGCCATTC 58.135 45.000 0.00 0.00 0.00 2.67
474 475 0.749649 AAACAAAGCCGTGCCATTCA 59.250 45.000 0.00 0.00 0.00 2.57
475 476 0.031994 AACAAAGCCGTGCCATTCAC 59.968 50.000 0.00 0.00 42.23 3.18
482 483 3.667087 GTGCCATTCACGGAAGCA 58.333 55.556 0.00 0.00 35.76 3.91
483 484 1.956043 GTGCCATTCACGGAAGCAA 59.044 52.632 0.00 0.00 35.76 3.91
484 485 0.313672 GTGCCATTCACGGAAGCAAA 59.686 50.000 0.00 0.00 35.76 3.68
485 486 1.035923 TGCCATTCACGGAAGCAAAA 58.964 45.000 0.00 0.00 0.00 2.44
486 487 1.617850 TGCCATTCACGGAAGCAAAAT 59.382 42.857 0.00 0.00 0.00 1.82
487 488 2.262211 GCCATTCACGGAAGCAAAATC 58.738 47.619 0.00 0.00 0.00 2.17
488 489 2.352617 GCCATTCACGGAAGCAAAATCA 60.353 45.455 0.00 0.00 0.00 2.57
489 490 3.676873 GCCATTCACGGAAGCAAAATCAT 60.677 43.478 0.00 0.00 0.00 2.45
490 491 3.861113 CCATTCACGGAAGCAAAATCATG 59.139 43.478 0.00 0.00 0.00 3.07
491 492 2.634982 TCACGGAAGCAAAATCATGC 57.365 45.000 0.00 0.00 46.78 4.06
498 499 3.247033 GCAAAATCATGCCTCTCGC 57.753 52.632 0.00 0.00 40.49 5.03
499 500 0.590732 GCAAAATCATGCCTCTCGCG 60.591 55.000 0.00 0.00 42.08 5.87
500 501 1.009078 CAAAATCATGCCTCTCGCGA 58.991 50.000 9.26 9.26 42.08 5.87
501 502 1.600957 CAAAATCATGCCTCTCGCGAT 59.399 47.619 10.36 0.00 42.08 4.58
502 503 2.802247 CAAAATCATGCCTCTCGCGATA 59.198 45.455 10.36 0.10 42.08 2.92
503 504 2.360553 AATCATGCCTCTCGCGATAG 57.639 50.000 10.36 12.60 42.08 2.08
527 528 7.681125 GCAAAAACATGCATTTTTCATGAAA 57.319 28.000 16.91 16.91 45.70 2.69
528 529 8.288217 GCAAAAACATGCATTTTTCATGAAAT 57.712 26.923 21.10 5.09 45.70 2.17
529 530 9.395707 GCAAAAACATGCATTTTTCATGAAATA 57.604 25.926 21.10 16.72 45.70 1.40
574 575 7.712204 TTTTGTCCAAAAGTTAAGGAAGACT 57.288 32.000 1.18 0.00 35.57 3.24
575 576 6.693315 TTGTCCAAAAGTTAAGGAAGACTG 57.307 37.500 0.00 0.00 32.30 3.51
576 577 5.996644 TGTCCAAAAGTTAAGGAAGACTGA 58.003 37.500 0.00 0.00 32.30 3.41
577 578 6.601332 TGTCCAAAAGTTAAGGAAGACTGAT 58.399 36.000 0.00 0.00 32.30 2.90
578 579 6.486657 TGTCCAAAAGTTAAGGAAGACTGATG 59.513 38.462 0.00 0.00 32.30 3.07
579 580 6.710744 GTCCAAAAGTTAAGGAAGACTGATGA 59.289 38.462 0.00 0.00 32.30 2.92
580 581 7.228706 GTCCAAAAGTTAAGGAAGACTGATGAA 59.771 37.037 0.00 0.00 32.30 2.57
581 582 7.777910 TCCAAAAGTTAAGGAAGACTGATGAAA 59.222 33.333 0.00 0.00 0.00 2.69
582 583 8.413229 CCAAAAGTTAAGGAAGACTGATGAAAA 58.587 33.333 0.00 0.00 0.00 2.29
583 584 9.801873 CAAAAGTTAAGGAAGACTGATGAAAAA 57.198 29.630 0.00 0.00 0.00 1.94
585 586 7.208225 AGTTAAGGAAGACTGATGAAAAAGC 57.792 36.000 0.00 0.00 0.00 3.51
586 587 6.772716 AGTTAAGGAAGACTGATGAAAAAGCA 59.227 34.615 0.00 0.00 0.00 3.91
587 588 7.285401 AGTTAAGGAAGACTGATGAAAAAGCAA 59.715 33.333 0.00 0.00 0.00 3.91
588 589 6.469782 AAGGAAGACTGATGAAAAAGCAAA 57.530 33.333 0.00 0.00 0.00 3.68
589 590 6.469782 AGGAAGACTGATGAAAAAGCAAAA 57.530 33.333 0.00 0.00 0.00 2.44
590 591 6.877236 AGGAAGACTGATGAAAAAGCAAAAA 58.123 32.000 0.00 0.00 0.00 1.94
591 592 6.982724 AGGAAGACTGATGAAAAAGCAAAAAG 59.017 34.615 0.00 0.00 0.00 2.27
592 593 6.292542 GGAAGACTGATGAAAAAGCAAAAAGC 60.293 38.462 0.00 0.00 46.19 3.51
624 625 9.701098 AAATCTAGAAAACCCGTTTAAAAATCC 57.299 29.630 0.00 0.00 31.63 3.01
625 626 7.820578 TCTAGAAAACCCGTTTAAAAATCCA 57.179 32.000 0.00 0.00 31.63 3.41
626 627 8.235359 TCTAGAAAACCCGTTTAAAAATCCAA 57.765 30.769 0.00 0.00 31.63 3.53
627 628 8.693625 TCTAGAAAACCCGTTTAAAAATCCAAA 58.306 29.630 0.00 0.00 31.63 3.28
628 629 9.315525 CTAGAAAACCCGTTTAAAAATCCAAAA 57.684 29.630 0.00 0.00 31.63 2.44
629 630 8.563123 AGAAAACCCGTTTAAAAATCCAAAAA 57.437 26.923 0.00 0.00 31.63 1.94
630 631 8.452534 AGAAAACCCGTTTAAAAATCCAAAAAC 58.547 29.630 0.00 0.00 31.63 2.43
631 632 7.683437 AAACCCGTTTAAAAATCCAAAAACA 57.317 28.000 0.00 0.00 32.61 2.83
632 633 7.867305 AACCCGTTTAAAAATCCAAAAACAT 57.133 28.000 0.00 0.00 32.61 2.71
633 634 7.252965 ACCCGTTTAAAAATCCAAAAACATG 57.747 32.000 0.00 0.00 32.61 3.21
634 635 6.824196 ACCCGTTTAAAAATCCAAAAACATGT 59.176 30.769 0.00 0.00 32.61 3.21
635 636 7.128976 CCCGTTTAAAAATCCAAAAACATGTG 58.871 34.615 0.00 0.00 32.61 3.21
636 637 7.011482 CCCGTTTAAAAATCCAAAAACATGTGA 59.989 33.333 0.00 0.00 32.61 3.58
637 638 8.391106 CCGTTTAAAAATCCAAAAACATGTGAA 58.609 29.630 0.00 0.00 32.61 3.18
638 639 9.760660 CGTTTAAAAATCCAAAAACATGTGAAA 57.239 25.926 0.00 0.00 32.61 2.69
645 646 9.838975 AAATCCAAAAACATGTGAAAGAAAAAC 57.161 25.926 0.00 0.00 0.00 2.43
646 647 7.969536 TCCAAAAACATGTGAAAGAAAAACA 57.030 28.000 0.00 0.00 0.00 2.83
647 648 8.383318 TCCAAAAACATGTGAAAGAAAAACAA 57.617 26.923 0.00 0.00 0.00 2.83
648 649 8.840321 TCCAAAAACATGTGAAAGAAAAACAAA 58.160 25.926 0.00 0.00 0.00 2.83
649 650 9.455847 CCAAAAACATGTGAAAGAAAAACAAAA 57.544 25.926 0.00 0.00 0.00 2.44
653 654 9.838975 AAACATGTGAAAGAAAAACAAAAATCC 57.161 25.926 0.00 0.00 0.00 3.01
654 655 8.558973 ACATGTGAAAGAAAAACAAAAATCCA 57.441 26.923 0.00 0.00 0.00 3.41
655 656 8.667463 ACATGTGAAAGAAAAACAAAAATCCAG 58.333 29.630 0.00 0.00 0.00 3.86
656 657 8.881743 CATGTGAAAGAAAAACAAAAATCCAGA 58.118 29.630 0.00 0.00 0.00 3.86
657 658 8.839310 TGTGAAAGAAAAACAAAAATCCAGAA 57.161 26.923 0.00 0.00 0.00 3.02
658 659 8.934825 TGTGAAAGAAAAACAAAAATCCAGAAG 58.065 29.630 0.00 0.00 0.00 2.85
659 660 9.150348 GTGAAAGAAAAACAAAAATCCAGAAGA 57.850 29.630 0.00 0.00 0.00 2.87
660 661 9.717942 TGAAAGAAAAACAAAAATCCAGAAGAA 57.282 25.926 0.00 0.00 0.00 2.52
663 664 8.185003 AGAAAAACAAAAATCCAGAAGAAACG 57.815 30.769 0.00 0.00 0.00 3.60
664 665 5.966636 AAACAAAAATCCAGAAGAAACGC 57.033 34.783 0.00 0.00 0.00 4.84
665 666 3.977427 ACAAAAATCCAGAAGAAACGCC 58.023 40.909 0.00 0.00 0.00 5.68
666 667 3.243737 ACAAAAATCCAGAAGAAACGCCC 60.244 43.478 0.00 0.00 0.00 6.13
667 668 2.286365 AAATCCAGAAGAAACGCCCA 57.714 45.000 0.00 0.00 0.00 5.36
668 669 1.826385 AATCCAGAAGAAACGCCCAG 58.174 50.000 0.00 0.00 0.00 4.45
669 670 0.984230 ATCCAGAAGAAACGCCCAGA 59.016 50.000 0.00 0.00 0.00 3.86
670 671 0.321671 TCCAGAAGAAACGCCCAGAG 59.678 55.000 0.00 0.00 0.00 3.35
671 672 1.301677 CCAGAAGAAACGCCCAGAGC 61.302 60.000 0.00 0.00 38.52 4.09
680 681 2.029666 GCCCAGAGCGCGATATGT 59.970 61.111 18.38 0.00 0.00 2.29
681 682 2.313172 GCCCAGAGCGCGATATGTG 61.313 63.158 18.38 7.78 0.00 3.21
682 683 1.665916 CCCAGAGCGCGATATGTGG 60.666 63.158 18.38 14.34 0.00 4.17
683 684 2.313172 CCAGAGCGCGATATGTGGC 61.313 63.158 18.38 0.00 0.00 5.01
688 689 3.705638 CGCGATATGTGGCGGCAG 61.706 66.667 13.91 0.00 46.88 4.85
689 690 4.017877 GCGATATGTGGCGGCAGC 62.018 66.667 13.91 7.51 44.18 5.25
706 707 4.228097 CCGAGAGCGCGCCAAATG 62.228 66.667 30.33 14.25 35.83 2.32
707 708 3.188100 CGAGAGCGCGCCAAATGA 61.188 61.111 30.33 0.00 0.00 2.57
708 709 2.401195 GAGAGCGCGCCAAATGAC 59.599 61.111 30.33 10.54 0.00 3.06
709 710 3.425938 GAGAGCGCGCCAAATGACG 62.426 63.158 30.33 0.00 0.00 4.35
715 716 3.490759 CGCCAAATGACGCGCTCT 61.491 61.111 5.73 0.00 42.17 4.09
716 717 2.401195 GCCAAATGACGCGCTCTC 59.599 61.111 5.73 0.00 0.00 3.20
717 718 2.390599 GCCAAATGACGCGCTCTCA 61.391 57.895 5.73 2.37 0.00 3.27
718 719 1.712081 CCAAATGACGCGCTCTCAG 59.288 57.895 5.73 0.00 0.00 3.35
719 720 1.059994 CAAATGACGCGCTCTCAGC 59.940 57.895 5.73 0.00 38.02 4.26
720 721 2.103042 AAATGACGCGCTCTCAGCC 61.103 57.895 5.73 0.00 38.18 4.85
721 722 2.513026 AAATGACGCGCTCTCAGCCT 62.513 55.000 5.73 0.00 38.18 4.58
722 723 1.667154 AATGACGCGCTCTCAGCCTA 61.667 55.000 5.73 0.00 38.18 3.93
723 724 2.278271 GACGCGCTCTCAGCCTAC 60.278 66.667 5.73 0.00 38.18 3.18
724 725 3.759766 GACGCGCTCTCAGCCTACC 62.760 68.421 5.73 0.00 38.18 3.18
725 726 4.577246 CGCGCTCTCAGCCTACCC 62.577 72.222 5.56 0.00 38.18 3.69
726 727 3.461773 GCGCTCTCAGCCTACCCA 61.462 66.667 0.00 0.00 38.18 4.51
727 728 2.496817 CGCTCTCAGCCTACCCAC 59.503 66.667 0.00 0.00 38.18 4.61
728 729 2.351244 CGCTCTCAGCCTACCCACA 61.351 63.158 0.00 0.00 38.18 4.17
729 730 1.888436 CGCTCTCAGCCTACCCACAA 61.888 60.000 0.00 0.00 38.18 3.33
730 731 0.324943 GCTCTCAGCCTACCCACAAA 59.675 55.000 0.00 0.00 34.48 2.83
731 732 1.065126 GCTCTCAGCCTACCCACAAAT 60.065 52.381 0.00 0.00 34.48 2.32
732 733 2.636830 CTCTCAGCCTACCCACAAATG 58.363 52.381 0.00 0.00 0.00 2.32
733 734 2.237143 CTCTCAGCCTACCCACAAATGA 59.763 50.000 0.00 0.00 0.00 2.57
734 735 2.846206 TCTCAGCCTACCCACAAATGAT 59.154 45.455 0.00 0.00 0.00 2.45
735 736 3.118261 TCTCAGCCTACCCACAAATGATC 60.118 47.826 0.00 0.00 0.00 2.92
736 737 1.942657 CAGCCTACCCACAAATGATCG 59.057 52.381 0.00 0.00 0.00 3.69
737 738 1.559682 AGCCTACCCACAAATGATCGT 59.440 47.619 0.00 0.00 0.00 3.73
738 739 2.026262 AGCCTACCCACAAATGATCGTT 60.026 45.455 0.00 0.00 0.00 3.85
739 740 2.097466 GCCTACCCACAAATGATCGTTG 59.903 50.000 0.00 4.21 0.00 4.10
740 741 3.605634 CCTACCCACAAATGATCGTTGA 58.394 45.455 14.11 0.00 0.00 3.18
741 742 3.623060 CCTACCCACAAATGATCGTTGAG 59.377 47.826 14.11 7.24 0.00 3.02
742 743 3.417069 ACCCACAAATGATCGTTGAGA 57.583 42.857 14.11 0.00 0.00 3.27
743 744 3.338249 ACCCACAAATGATCGTTGAGAG 58.662 45.455 14.11 4.08 0.00 3.20
744 745 2.679837 CCCACAAATGATCGTTGAGAGG 59.320 50.000 14.11 11.24 0.00 3.69
745 746 2.096496 CCACAAATGATCGTTGAGAGGC 59.904 50.000 14.11 0.00 0.00 4.70
746 747 3.005554 CACAAATGATCGTTGAGAGGCT 58.994 45.455 14.11 0.00 0.00 4.58
747 748 3.438087 CACAAATGATCGTTGAGAGGCTT 59.562 43.478 14.11 0.00 0.00 4.35
748 749 4.074970 ACAAATGATCGTTGAGAGGCTTT 58.925 39.130 14.11 0.00 0.00 3.51
749 750 4.154918 ACAAATGATCGTTGAGAGGCTTTC 59.845 41.667 14.11 0.00 0.00 2.62
750 751 1.996292 TGATCGTTGAGAGGCTTTCG 58.004 50.000 0.17 0.00 0.00 3.46
751 752 1.544246 TGATCGTTGAGAGGCTTTCGA 59.456 47.619 0.17 0.00 0.00 3.71
752 753 2.029380 TGATCGTTGAGAGGCTTTCGAA 60.029 45.455 0.00 0.00 0.00 3.71
753 754 2.065993 TCGTTGAGAGGCTTTCGAAG 57.934 50.000 0.00 0.00 0.00 3.79
754 755 1.611977 TCGTTGAGAGGCTTTCGAAGA 59.388 47.619 6.79 6.79 0.00 2.87
755 756 2.035449 TCGTTGAGAGGCTTTCGAAGAA 59.965 45.455 8.19 0.00 45.90 2.52
756 757 2.410053 CGTTGAGAGGCTTTCGAAGAAG 59.590 50.000 2.59 0.00 45.90 2.85
757 758 2.086054 TGAGAGGCTTTCGAAGAAGC 57.914 50.000 12.47 12.47 45.90 3.86
758 759 0.995728 GAGAGGCTTTCGAAGAAGCG 59.004 55.000 14.06 0.00 45.90 4.68
759 760 1.016653 AGAGGCTTTCGAAGAAGCGC 61.017 55.000 14.06 0.00 45.90 5.92
760 761 1.004440 AGGCTTTCGAAGAAGCGCT 60.004 52.632 2.64 2.64 45.90 5.92
761 762 1.016653 AGGCTTTCGAAGAAGCGCTC 61.017 55.000 12.06 4.30 45.90 5.03
762 763 1.057976 GCTTTCGAAGAAGCGCTCG 59.942 57.895 12.06 10.94 45.90 5.03
763 764 1.618640 GCTTTCGAAGAAGCGCTCGT 61.619 55.000 12.06 2.20 45.90 4.18
764 765 0.363846 CTTTCGAAGAAGCGCTCGTC 59.636 55.000 12.06 5.48 45.90 4.20
765 766 0.318360 TTTCGAAGAAGCGCTCGTCA 60.318 50.000 12.06 0.00 45.90 4.35
766 767 0.318360 TTCGAAGAAGCGCTCGTCAA 60.318 50.000 12.06 0.00 45.90 3.18
767 768 1.002250 TCGAAGAAGCGCTCGTCAAC 61.002 55.000 12.06 2.99 32.54 3.18
768 769 1.004277 CGAAGAAGCGCTCGTCAACT 61.004 55.000 12.06 0.00 32.54 3.16
769 770 1.728179 CGAAGAAGCGCTCGTCAACTA 60.728 52.381 12.06 0.00 32.54 2.24
770 771 1.914700 GAAGAAGCGCTCGTCAACTAG 59.085 52.381 12.06 0.00 33.18 2.57
771 772 0.882474 AGAAGCGCTCGTCAACTAGT 59.118 50.000 12.06 0.00 0.00 2.57
772 773 1.269998 AGAAGCGCTCGTCAACTAGTT 59.730 47.619 12.06 1.12 0.00 2.24
773 774 1.387084 GAAGCGCTCGTCAACTAGTTG 59.613 52.381 26.60 26.60 41.71 3.16
774 775 1.009389 AGCGCTCGTCAACTAGTTGC 61.009 55.000 27.49 20.92 40.24 4.17
775 776 1.009389 GCGCTCGTCAACTAGTTGCT 61.009 55.000 27.49 0.00 40.24 3.91
776 777 1.419374 CGCTCGTCAACTAGTTGCTT 58.581 50.000 27.49 0.00 40.24 3.91
777 778 1.792949 CGCTCGTCAACTAGTTGCTTT 59.207 47.619 27.49 0.00 40.24 3.51
778 779 2.221055 CGCTCGTCAACTAGTTGCTTTT 59.779 45.455 27.49 0.00 40.24 2.27
779 780 3.303132 CGCTCGTCAACTAGTTGCTTTTT 60.303 43.478 27.49 0.00 40.24 1.94
780 781 4.084745 CGCTCGTCAACTAGTTGCTTTTTA 60.085 41.667 27.49 9.29 40.24 1.52
781 782 5.389516 CGCTCGTCAACTAGTTGCTTTTTAT 60.390 40.000 27.49 0.00 40.24 1.40
782 783 6.183360 CGCTCGTCAACTAGTTGCTTTTTATA 60.183 38.462 27.49 7.88 40.24 0.98
783 784 7.464178 CGCTCGTCAACTAGTTGCTTTTTATAT 60.464 37.037 27.49 0.00 40.24 0.86
784 785 7.636359 GCTCGTCAACTAGTTGCTTTTTATATG 59.364 37.037 27.49 14.58 40.24 1.78
785 786 7.970384 TCGTCAACTAGTTGCTTTTTATATGG 58.030 34.615 27.49 2.87 40.24 2.74
786 787 6.687105 CGTCAACTAGTTGCTTTTTATATGGC 59.313 38.462 27.49 4.19 40.24 4.40
787 788 6.687105 GTCAACTAGTTGCTTTTTATATGGCG 59.313 38.462 27.49 1.83 40.24 5.69
788 789 5.169836 ACTAGTTGCTTTTTATATGGCGC 57.830 39.130 0.00 0.00 0.00 6.53
789 790 3.436700 AGTTGCTTTTTATATGGCGCC 57.563 42.857 22.73 22.73 0.00 6.53
790 791 3.023832 AGTTGCTTTTTATATGGCGCCT 58.976 40.909 29.70 15.76 0.00 5.52
791 792 4.204012 AGTTGCTTTTTATATGGCGCCTA 58.796 39.130 29.70 17.52 0.00 3.93
792 793 4.642885 AGTTGCTTTTTATATGGCGCCTAA 59.357 37.500 29.70 15.43 0.00 2.69
801 802 0.977395 ATGGCGCCTAATAGGAGGTC 59.023 55.000 29.70 2.96 37.67 3.85
810 811 4.827835 GCCTAATAGGAGGTCCCATTTTTC 59.172 45.833 11.13 0.00 37.67 2.29
812 813 6.673583 CCTAATAGGAGGTCCCATTTTTCTT 58.326 40.000 0.00 0.00 37.67 2.52
848 849 6.326375 GTTAACCAAATGAACGCAATCCATA 58.674 36.000 0.00 0.00 0.00 2.74
849 850 4.637483 ACCAAATGAACGCAATCCATAG 57.363 40.909 0.00 0.00 0.00 2.23
850 851 3.181487 ACCAAATGAACGCAATCCATAGC 60.181 43.478 0.00 0.00 0.00 2.97
851 852 3.374745 CAAATGAACGCAATCCATAGCC 58.625 45.455 0.00 0.00 0.00 3.93
852 853 2.645838 ATGAACGCAATCCATAGCCT 57.354 45.000 0.00 0.00 0.00 4.58
853 854 2.418368 TGAACGCAATCCATAGCCTT 57.582 45.000 0.00 0.00 0.00 4.35
854 855 2.722094 TGAACGCAATCCATAGCCTTT 58.278 42.857 0.00 0.00 0.00 3.11
855 856 3.088532 TGAACGCAATCCATAGCCTTTT 58.911 40.909 0.00 0.00 0.00 2.27
856 857 3.509575 TGAACGCAATCCATAGCCTTTTT 59.490 39.130 0.00 0.00 0.00 1.94
883 884 5.411781 TCTTTTTCTTTTAGGCAAACGCAA 58.588 33.333 0.00 0.00 0.00 4.85
888 889 3.057596 TCTTTTAGGCAAACGCAATCCAG 60.058 43.478 0.00 0.00 0.00 3.86
904 905 1.680522 CCAGAGCCGAGTAGCACCAT 61.681 60.000 0.00 0.00 34.23 3.55
955 956 2.036346 GCAAAACAAGCCCAATCACTCT 59.964 45.455 0.00 0.00 0.00 3.24
1089 1099 1.873591 GTGAACAACCAGATCAAGCGT 59.126 47.619 0.00 0.00 30.22 5.07
1194 1204 0.392998 CCAACTGGCTCCGCAAGTAT 60.393 55.000 0.00 0.00 42.67 2.12
1434 1444 1.379576 CCTCCCCGACGACTACCTT 60.380 63.158 0.00 0.00 0.00 3.50
1651 1661 2.996621 GACAAGATGGAGGACTTCAACG 59.003 50.000 0.00 0.00 0.00 4.10
1725 1735 3.123620 CAGGCTGAGAAGCGTGCC 61.124 66.667 9.42 0.00 42.42 5.01
1878 1888 5.048643 CCTCTTCTATGTGTCGAATCGGTAT 60.049 44.000 1.76 0.00 0.00 2.73
1940 1950 0.103937 GAGCTGAGGGTGAAGGATCG 59.896 60.000 0.00 0.00 0.00 3.69
2007 2017 3.000041 TCTGCACGAATTTAATCAGCGT 59.000 40.909 0.00 0.00 35.33 5.07
2175 2185 4.229304 TGGTGATGATAACCGGTGATTT 57.771 40.909 8.52 0.00 40.86 2.17
2205 2215 1.050988 GCCTGATGCCCCTCTAGACA 61.051 60.000 0.00 0.00 0.00 3.41
2218 2228 4.154195 CCCTCTAGACAAATTGTTGAACGG 59.846 45.833 0.00 0.00 38.20 4.44
2260 2270 6.787085 ACACTAAAGCAATAAGAGTGACAC 57.213 37.500 7.30 0.00 39.94 3.67
2271 2281 6.782082 ATAAGAGTGACACTGCTATGAAGA 57.218 37.500 14.14 0.00 0.00 2.87
2274 2284 4.157656 AGAGTGACACTGCTATGAAGAGAC 59.842 45.833 14.14 0.00 0.00 3.36
2343 2353 6.409524 TTGCTGGTCAAAGAGAATTGATTT 57.590 33.333 0.00 0.00 41.09 2.17
2349 2359 6.159293 GGTCAAAGAGAATTGATTTCCAACC 58.841 40.000 0.00 0.00 41.09 3.77
2364 2374 6.538945 TTTCCAACCTGCTAGTTTTTCTTT 57.461 33.333 0.00 0.00 0.00 2.52
2371 2381 5.299531 ACCTGCTAGTTTTTCTTTTCAGGAC 59.700 40.000 11.39 0.00 38.18 3.85
2399 2409 2.265367 TGGAGAACTGCAGGAATACCA 58.735 47.619 19.93 16.64 38.94 3.25
2719 2736 3.779759 TGCGATTTTGGTGGATATTTGC 58.220 40.909 0.00 0.00 0.00 3.68
2734 2751 1.669604 TTTGCGCACAGTTGGAGTTA 58.330 45.000 11.12 0.00 0.00 2.24
2930 2962 6.343703 TCATTCATGTCCTGTCTAGTCATTG 58.656 40.000 0.00 0.00 0.00 2.82
2980 3012 8.000709 TCATTTAAATTCTACTGGGATGATGCT 58.999 33.333 0.00 0.00 0.00 3.79
2988 3020 2.295885 CTGGGATGATGCTTTGTCCTC 58.704 52.381 0.00 0.00 0.00 3.71
3053 3085 5.282510 GTGGATTACTGGACTAATGACTCG 58.717 45.833 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.878667 TGGACACACGATTTAAGAGATAAAATA 57.121 29.630 0.00 0.00 37.06 1.40
22 23 8.786826 TGGACACACGATTTAAGAGATAAAAT 57.213 30.769 0.00 0.00 37.06 1.82
23 24 8.610248 TTGGACACACGATTTAAGAGATAAAA 57.390 30.769 0.00 0.00 37.06 1.52
24 25 8.610248 TTTGGACACACGATTTAAGAGATAAA 57.390 30.769 0.00 0.00 37.86 1.40
25 26 8.786826 ATTTGGACACACGATTTAAGAGATAA 57.213 30.769 0.00 0.00 0.00 1.75
26 27 8.258007 AGATTTGGACACACGATTTAAGAGATA 58.742 33.333 0.00 0.00 0.00 1.98
27 28 7.106239 AGATTTGGACACACGATTTAAGAGAT 58.894 34.615 0.00 0.00 0.00 2.75
28 29 6.464222 AGATTTGGACACACGATTTAAGAGA 58.536 36.000 0.00 0.00 0.00 3.10
29 30 6.727824 AGATTTGGACACACGATTTAAGAG 57.272 37.500 0.00 0.00 0.00 2.85
30 31 6.708502 TCAAGATTTGGACACACGATTTAAGA 59.291 34.615 0.00 0.00 0.00 2.10
31 32 6.898041 TCAAGATTTGGACACACGATTTAAG 58.102 36.000 0.00 0.00 0.00 1.85
32 33 6.869315 TCAAGATTTGGACACACGATTTAA 57.131 33.333 0.00 0.00 0.00 1.52
33 34 6.293735 GGTTCAAGATTTGGACACACGATTTA 60.294 38.462 2.92 0.00 41.10 1.40
34 35 5.507315 GGTTCAAGATTTGGACACACGATTT 60.507 40.000 2.92 0.00 41.10 2.17
35 36 4.023193 GGTTCAAGATTTGGACACACGATT 60.023 41.667 2.92 0.00 41.10 3.34
36 37 3.502211 GGTTCAAGATTTGGACACACGAT 59.498 43.478 2.92 0.00 41.10 3.73
37 38 2.875933 GGTTCAAGATTTGGACACACGA 59.124 45.455 2.92 0.00 41.10 4.35
38 39 2.349438 CGGTTCAAGATTTGGACACACG 60.349 50.000 2.92 0.00 41.10 4.49
39 40 2.616842 ACGGTTCAAGATTTGGACACAC 59.383 45.455 2.92 0.00 41.10 3.82
40 41 2.925724 ACGGTTCAAGATTTGGACACA 58.074 42.857 2.92 0.00 41.10 3.72
41 42 3.982576 AACGGTTCAAGATTTGGACAC 57.017 42.857 2.92 0.00 41.10 3.67
42 43 4.399618 TGAAAACGGTTCAAGATTTGGACA 59.600 37.500 2.92 0.00 41.10 4.02
43 44 4.927422 TGAAAACGGTTCAAGATTTGGAC 58.073 39.130 0.00 0.00 38.49 4.02
44 45 5.561919 CGATGAAAACGGTTCAAGATTTGGA 60.562 40.000 7.74 0.00 31.55 3.53
45 46 4.616802 CGATGAAAACGGTTCAAGATTTGG 59.383 41.667 7.74 0.00 31.55 3.28
46 47 5.212194 ACGATGAAAACGGTTCAAGATTTG 58.788 37.500 7.74 0.00 35.94 2.32
47 48 5.432885 ACGATGAAAACGGTTCAAGATTT 57.567 34.783 7.74 0.00 35.94 2.17
48 49 5.212194 CAACGATGAAAACGGTTCAAGATT 58.788 37.500 7.74 1.22 35.94 2.40
49 50 4.320202 CCAACGATGAAAACGGTTCAAGAT 60.320 41.667 7.74 0.00 35.94 2.40
50 51 3.002862 CCAACGATGAAAACGGTTCAAGA 59.997 43.478 7.74 0.00 35.94 3.02
51 52 3.002862 TCCAACGATGAAAACGGTTCAAG 59.997 43.478 7.74 7.75 35.94 3.02
52 53 2.943690 TCCAACGATGAAAACGGTTCAA 59.056 40.909 7.74 0.00 35.94 2.69
53 54 2.562635 TCCAACGATGAAAACGGTTCA 58.437 42.857 6.30 6.30 35.94 3.18
54 55 3.824414 ATCCAACGATGAAAACGGTTC 57.176 42.857 0.00 0.00 35.94 3.62
55 56 3.057806 GGAATCCAACGATGAAAACGGTT 60.058 43.478 0.00 0.00 35.94 4.44
56 57 2.486592 GGAATCCAACGATGAAAACGGT 59.513 45.455 0.00 0.00 35.94 4.83
57 58 2.159435 GGGAATCCAACGATGAAAACGG 60.159 50.000 0.09 0.00 35.94 4.44
58 59 2.159435 GGGGAATCCAACGATGAAAACG 60.159 50.000 0.09 0.00 34.94 3.60
59 60 2.159435 CGGGGAATCCAACGATGAAAAC 60.159 50.000 9.54 0.00 34.36 2.43
60 61 2.088423 CGGGGAATCCAACGATGAAAA 58.912 47.619 9.54 0.00 34.36 2.29
61 62 1.745232 CGGGGAATCCAACGATGAAA 58.255 50.000 9.54 0.00 34.36 2.69
62 63 0.746563 GCGGGGAATCCAACGATGAA 60.747 55.000 17.60 0.00 34.36 2.57
63 64 1.153249 GCGGGGAATCCAACGATGA 60.153 57.895 17.60 0.00 34.36 2.92
64 65 2.534019 CGCGGGGAATCCAACGATG 61.534 63.158 17.60 6.80 35.67 3.84
65 66 2.203015 CGCGGGGAATCCAACGAT 60.203 61.111 17.60 0.00 35.67 3.73
66 67 3.242897 AACGCGGGGAATCCAACGA 62.243 57.895 17.60 0.00 36.69 3.85
67 68 2.744709 AACGCGGGGAATCCAACG 60.745 61.111 12.47 10.59 38.39 4.10
68 69 1.644786 CTCAACGCGGGGAATCCAAC 61.645 60.000 12.47 0.00 34.36 3.77
69 70 1.376683 CTCAACGCGGGGAATCCAA 60.377 57.895 12.47 0.00 34.36 3.53
70 71 1.622607 ATCTCAACGCGGGGAATCCA 61.623 55.000 12.47 0.00 34.36 3.41
71 72 0.880718 GATCTCAACGCGGGGAATCC 60.881 60.000 12.47 0.00 0.00 3.01
72 73 0.105039 AGATCTCAACGCGGGGAATC 59.895 55.000 12.47 12.25 0.00 2.52
73 74 0.541863 AAGATCTCAACGCGGGGAAT 59.458 50.000 12.47 4.10 0.00 3.01
74 75 0.108329 GAAGATCTCAACGCGGGGAA 60.108 55.000 12.47 0.00 0.00 3.97
75 76 1.254975 TGAAGATCTCAACGCGGGGA 61.255 55.000 12.47 6.41 0.00 4.81
76 77 0.391130 TTGAAGATCTCAACGCGGGG 60.391 55.000 12.47 1.03 39.20 5.73
77 78 1.438651 TTTGAAGATCTCAACGCGGG 58.561 50.000 12.47 1.49 43.90 6.13
78 79 2.480419 AGTTTTGAAGATCTCAACGCGG 59.520 45.455 12.47 0.00 43.90 6.46
79 80 3.795561 AGTTTTGAAGATCTCAACGCG 57.204 42.857 3.53 3.53 43.90 6.01
80 81 6.654793 ATCTAGTTTTGAAGATCTCAACGC 57.345 37.500 0.00 0.00 43.90 4.84
81 82 7.331934 TGGAATCTAGTTTTGAAGATCTCAACG 59.668 37.037 0.00 0.00 43.90 4.10
82 83 8.553459 TGGAATCTAGTTTTGAAGATCTCAAC 57.447 34.615 0.00 0.00 43.90 3.18
83 84 9.170734 CATGGAATCTAGTTTTGAAGATCTCAA 57.829 33.333 0.00 0.00 42.48 3.02
84 85 8.324306 ACATGGAATCTAGTTTTGAAGATCTCA 58.676 33.333 0.00 0.00 0.00 3.27
85 86 8.729805 ACATGGAATCTAGTTTTGAAGATCTC 57.270 34.615 0.00 0.00 0.00 2.75
86 87 8.954350 CAACATGGAATCTAGTTTTGAAGATCT 58.046 33.333 0.00 0.00 0.00 2.75
87 88 8.950210 TCAACATGGAATCTAGTTTTGAAGATC 58.050 33.333 0.00 0.00 0.00 2.75
88 89 8.868522 TCAACATGGAATCTAGTTTTGAAGAT 57.131 30.769 0.00 0.00 0.00 2.40
89 90 8.868522 ATCAACATGGAATCTAGTTTTGAAGA 57.131 30.769 0.00 0.00 0.00 2.87
91 92 9.958180 TCTATCAACATGGAATCTAGTTTTGAA 57.042 29.630 0.00 0.00 0.00 2.69
99 100 9.045223 CGTCAAAATCTATCAACATGGAATCTA 57.955 33.333 0.00 0.00 0.00 1.98
100 101 7.012704 CCGTCAAAATCTATCAACATGGAATCT 59.987 37.037 0.00 0.00 0.00 2.40
101 102 7.012327 TCCGTCAAAATCTATCAACATGGAATC 59.988 37.037 0.00 0.00 0.00 2.52
102 103 6.828273 TCCGTCAAAATCTATCAACATGGAAT 59.172 34.615 0.00 0.00 0.00 3.01
103 104 6.176896 TCCGTCAAAATCTATCAACATGGAA 58.823 36.000 0.00 0.00 0.00 3.53
104 105 5.739959 TCCGTCAAAATCTATCAACATGGA 58.260 37.500 0.00 0.00 0.00 3.41
105 106 6.624352 ATCCGTCAAAATCTATCAACATGG 57.376 37.500 0.00 0.00 0.00 3.66
106 107 8.915871 AAAATCCGTCAAAATCTATCAACATG 57.084 30.769 0.00 0.00 0.00 3.21
152 153 2.099098 CAGTGCTTCCGGTTCAGTTTTT 59.901 45.455 0.00 0.00 0.00 1.94
153 154 1.676006 CAGTGCTTCCGGTTCAGTTTT 59.324 47.619 0.00 0.00 0.00 2.43
154 155 1.308998 CAGTGCTTCCGGTTCAGTTT 58.691 50.000 0.00 0.00 0.00 2.66
155 156 0.180406 ACAGTGCTTCCGGTTCAGTT 59.820 50.000 0.00 0.00 0.00 3.16
156 157 0.180406 AACAGTGCTTCCGGTTCAGT 59.820 50.000 0.00 0.00 0.00 3.41
157 158 1.002468 CAAACAGTGCTTCCGGTTCAG 60.002 52.381 0.00 0.00 0.00 3.02
158 159 1.021202 CAAACAGTGCTTCCGGTTCA 58.979 50.000 0.00 0.00 0.00 3.18
159 160 1.021968 ACAAACAGTGCTTCCGGTTC 58.978 50.000 0.00 0.00 0.00 3.62
160 161 1.404035 GAACAAACAGTGCTTCCGGTT 59.596 47.619 0.00 0.00 0.00 4.44
161 162 1.021968 GAACAAACAGTGCTTCCGGT 58.978 50.000 0.00 0.00 0.00 5.28
162 163 0.310854 GGAACAAACAGTGCTTCCGG 59.689 55.000 0.00 0.00 31.84 5.14
163 164 0.310854 GGGAACAAACAGTGCTTCCG 59.689 55.000 0.00 0.00 37.86 4.30
164 165 1.692411 AGGGAACAAACAGTGCTTCC 58.308 50.000 0.00 0.00 37.00 3.46
165 166 3.490933 GGAAAGGGAACAAACAGTGCTTC 60.491 47.826 0.00 0.00 0.00 3.86
166 167 2.430694 GGAAAGGGAACAAACAGTGCTT 59.569 45.455 0.00 0.00 0.00 3.91
167 168 2.031870 GGAAAGGGAACAAACAGTGCT 58.968 47.619 0.00 0.00 0.00 4.40
168 169 1.754226 TGGAAAGGGAACAAACAGTGC 59.246 47.619 0.00 0.00 0.00 4.40
169 170 4.464069 TTTGGAAAGGGAACAAACAGTG 57.536 40.909 0.00 0.00 0.00 3.66
170 171 4.775253 TCTTTTGGAAAGGGAACAAACAGT 59.225 37.500 1.04 0.00 34.21 3.55
171 172 5.337578 TCTTTTGGAAAGGGAACAAACAG 57.662 39.130 1.04 0.00 34.21 3.16
172 173 4.161377 CCTCTTTTGGAAAGGGAACAAACA 59.839 41.667 1.96 0.00 34.21 2.83
173 174 4.693283 CCTCTTTTGGAAAGGGAACAAAC 58.307 43.478 1.96 0.00 34.21 2.93
174 175 3.133901 GCCTCTTTTGGAAAGGGAACAAA 59.866 43.478 1.96 0.00 32.77 2.83
175 176 2.698274 GCCTCTTTTGGAAAGGGAACAA 59.302 45.455 1.96 0.00 0.00 2.83
176 177 2.316108 GCCTCTTTTGGAAAGGGAACA 58.684 47.619 1.96 0.00 0.00 3.18
177 178 2.035961 GTGCCTCTTTTGGAAAGGGAAC 59.964 50.000 1.96 3.41 31.86 3.62
178 179 2.316108 GTGCCTCTTTTGGAAAGGGAA 58.684 47.619 1.96 0.00 31.86 3.97
179 180 1.817740 CGTGCCTCTTTTGGAAAGGGA 60.818 52.381 1.96 0.00 0.00 4.20
180 181 0.598065 CGTGCCTCTTTTGGAAAGGG 59.402 55.000 1.04 0.00 0.00 3.95
181 182 0.598065 CCGTGCCTCTTTTGGAAAGG 59.402 55.000 1.04 0.00 0.00 3.11
182 183 1.266989 GACCGTGCCTCTTTTGGAAAG 59.733 52.381 0.00 0.00 0.00 2.62
183 184 1.314730 GACCGTGCCTCTTTTGGAAA 58.685 50.000 0.00 0.00 0.00 3.13
184 185 0.882927 CGACCGTGCCTCTTTTGGAA 60.883 55.000 0.00 0.00 0.00 3.53
185 186 1.301401 CGACCGTGCCTCTTTTGGA 60.301 57.895 0.00 0.00 0.00 3.53
186 187 1.597027 ACGACCGTGCCTCTTTTGG 60.597 57.895 0.00 0.00 0.00 3.28
187 188 1.569493 CACGACCGTGCCTCTTTTG 59.431 57.895 9.69 0.00 39.39 2.44
188 189 4.043168 CACGACCGTGCCTCTTTT 57.957 55.556 9.69 0.00 39.39 2.27
196 197 3.414700 GCAAGAGGCACGACCGTG 61.415 66.667 17.19 17.19 46.52 4.94
198 199 4.717629 TCGCAAGAGGCACGACCG 62.718 66.667 0.00 0.00 46.52 4.79
220 221 2.507102 CGCGAGAGGCACGATTGT 60.507 61.111 0.00 0.00 43.84 2.71
221 222 3.918220 GCGCGAGAGGCACGATTG 61.918 66.667 12.10 0.00 43.84 2.67
222 223 3.932580 TTGCGCGAGAGGCACGATT 62.933 57.895 12.10 0.00 43.84 3.34
223 224 4.435436 TTGCGCGAGAGGCACGAT 62.435 61.111 12.10 0.00 43.84 3.73
227 228 4.986645 TTGCTTGCGCGAGAGGCA 62.987 61.111 29.00 17.21 43.84 4.75
228 229 3.254014 TTTTGCTTGCGCGAGAGGC 62.254 57.895 29.00 14.58 39.65 4.70
229 230 1.441016 GTTTTGCTTGCGCGAGAGG 60.441 57.895 29.00 3.07 39.65 3.69
230 231 1.441016 GGTTTTGCTTGCGCGAGAG 60.441 57.895 29.00 14.53 39.65 3.20
231 232 2.637025 GGTTTTGCTTGCGCGAGA 59.363 55.556 29.00 10.61 39.65 4.04
232 233 2.796617 CGGTTTTGCTTGCGCGAG 60.797 61.111 20.86 20.86 39.65 5.03
233 234 3.578272 ACGGTTTTGCTTGCGCGA 61.578 55.556 12.10 0.00 39.65 5.87
234 235 3.385999 CACGGTTTTGCTTGCGCG 61.386 61.111 0.00 0.00 39.65 6.86
235 236 3.691356 GCACGGTTTTGCTTGCGC 61.691 61.111 0.00 0.00 39.59 6.09
236 237 1.875813 TTGCACGGTTTTGCTTGCG 60.876 52.632 0.00 0.00 43.41 4.85
237 238 0.805711 AGTTGCACGGTTTTGCTTGC 60.806 50.000 0.00 0.00 43.41 4.01
238 239 1.199624 GAGTTGCACGGTTTTGCTTG 58.800 50.000 0.00 0.00 43.41 4.01
239 240 0.248458 CGAGTTGCACGGTTTTGCTT 60.248 50.000 0.00 0.00 43.41 3.91
240 241 1.355210 CGAGTTGCACGGTTTTGCT 59.645 52.632 0.00 0.00 43.41 3.91
241 242 2.292916 GCGAGTTGCACGGTTTTGC 61.293 57.895 0.00 0.00 45.45 3.68
242 243 2.003443 CGCGAGTTGCACGGTTTTG 61.003 57.895 0.00 0.00 46.97 2.44
243 244 2.326550 CGCGAGTTGCACGGTTTT 59.673 55.556 0.00 0.00 46.97 2.43
244 245 3.645975 CCGCGAGTTGCACGGTTT 61.646 61.111 8.23 0.00 46.97 3.27
245 246 4.595538 TCCGCGAGTTGCACGGTT 62.596 61.111 8.23 0.00 46.92 4.44
246 247 4.595538 TTCCGCGAGTTGCACGGT 62.596 61.111 8.23 0.00 46.92 4.83
247 248 3.777925 CTTCCGCGAGTTGCACGG 61.778 66.667 8.23 6.36 46.97 4.94
248 249 1.827315 TTTCTTCCGCGAGTTGCACG 61.827 55.000 8.23 0.00 46.97 5.34
249 250 0.306533 TTTTCTTCCGCGAGTTGCAC 59.693 50.000 8.23 0.00 46.97 4.57
250 251 1.018148 TTTTTCTTCCGCGAGTTGCA 58.982 45.000 8.23 0.00 46.97 4.08
251 252 3.837669 TTTTTCTTCCGCGAGTTGC 57.162 47.368 8.23 0.00 41.47 4.17
288 289 5.005971 AGTCGTGATTCTCGAAAACGAAAAA 59.994 36.000 17.03 0.00 41.63 1.94
289 290 4.505191 AGTCGTGATTCTCGAAAACGAAAA 59.495 37.500 17.03 0.00 41.63 2.29
290 291 4.046462 AGTCGTGATTCTCGAAAACGAAA 58.954 39.130 17.03 0.00 41.63 3.46
291 292 3.635331 AGTCGTGATTCTCGAAAACGAA 58.365 40.909 17.03 0.00 41.63 3.85
292 293 3.278367 AGTCGTGATTCTCGAAAACGA 57.722 42.857 11.95 13.48 39.48 3.85
293 294 5.490472 TTTAGTCGTGATTCTCGAAAACG 57.510 39.130 11.95 10.27 39.01 3.60
316 317 0.319469 CCGCGAAAGGCATGGTTTTT 60.319 50.000 8.23 0.00 43.84 1.94
317 318 1.175983 TCCGCGAAAGGCATGGTTTT 61.176 50.000 8.23 0.00 43.84 2.43
318 319 1.175983 TTCCGCGAAAGGCATGGTTT 61.176 50.000 8.23 0.00 43.84 3.27
319 320 1.586154 CTTCCGCGAAAGGCATGGTT 61.586 55.000 8.23 0.00 43.84 3.67
320 321 2.033448 TTCCGCGAAAGGCATGGT 59.967 55.556 8.23 0.00 43.84 3.55
321 322 1.305219 TTCTTCCGCGAAAGGCATGG 61.305 55.000 8.23 0.00 43.84 3.66
322 323 0.521291 TTTCTTCCGCGAAAGGCATG 59.479 50.000 8.23 0.00 43.84 4.06
323 324 1.243902 TTTTCTTCCGCGAAAGGCAT 58.756 45.000 8.23 0.00 43.84 4.40
324 325 1.025812 TTTTTCTTCCGCGAAAGGCA 58.974 45.000 8.23 0.00 43.84 4.75
325 326 3.857638 TTTTTCTTCCGCGAAAGGC 57.142 47.368 8.23 0.00 34.67 4.35
362 363 7.734521 ACAGTCGTGTCTCTTGGAAACAAAAA 61.735 38.462 0.00 0.00 41.12 1.94
363 364 6.315325 ACAGTCGTGTCTCTTGGAAACAAAA 61.315 40.000 0.00 0.00 41.12 2.44
364 365 4.861647 ACAGTCGTGTCTCTTGGAAACAAA 60.862 41.667 0.00 0.00 41.12 2.83
365 366 3.369052 ACAGTCGTGTCTCTTGGAAACAA 60.369 43.478 0.00 0.00 39.78 2.83
366 367 2.167693 ACAGTCGTGTCTCTTGGAAACA 59.832 45.455 0.00 0.00 31.79 2.83
367 368 2.540101 CACAGTCGTGTCTCTTGGAAAC 59.460 50.000 0.00 0.00 38.41 2.78
368 369 2.821546 CACAGTCGTGTCTCTTGGAAA 58.178 47.619 0.00 0.00 38.41 3.13
369 370 1.538204 GCACAGTCGTGTCTCTTGGAA 60.538 52.381 0.00 0.00 45.50 3.53
370 371 0.032130 GCACAGTCGTGTCTCTTGGA 59.968 55.000 0.00 0.00 45.50 3.53
371 372 0.946221 GGCACAGTCGTGTCTCTTGG 60.946 60.000 0.00 0.00 44.67 3.61
372 373 2.522060 GGCACAGTCGTGTCTCTTG 58.478 57.895 0.00 0.00 44.67 3.02
378 379 2.645567 CGAGAGGCACAGTCGTGT 59.354 61.111 0.00 0.00 45.50 4.49
379 380 2.807045 GCGAGAGGCACAGTCGTG 60.807 66.667 0.00 0.00 46.56 4.35
380 381 4.406173 CGCGAGAGGCACAGTCGT 62.406 66.667 0.00 0.00 43.84 4.34
382 383 3.282745 TTCCGCGAGAGGCACAGTC 62.283 63.158 8.23 0.00 43.84 3.51
383 384 3.288308 CTTCCGCGAGAGGCACAGT 62.288 63.158 8.23 0.00 43.84 3.55
384 385 2.492449 TTCTTCCGCGAGAGGCACAG 62.492 60.000 8.23 0.00 43.84 3.66
385 386 2.094757 TTTCTTCCGCGAGAGGCACA 62.095 55.000 8.23 0.00 43.84 4.57
386 387 0.949105 TTTTCTTCCGCGAGAGGCAC 60.949 55.000 8.23 0.00 43.84 5.01
387 388 0.250124 TTTTTCTTCCGCGAGAGGCA 60.250 50.000 8.23 0.00 43.84 4.75
388 389 2.540145 TTTTTCTTCCGCGAGAGGC 58.460 52.632 8.23 0.00 38.69 4.70
415 416 6.819284 ACATGCTTCTCAGAAAATGGAAAAA 58.181 32.000 12.33 0.00 0.00 1.94
416 417 6.409524 ACATGCTTCTCAGAAAATGGAAAA 57.590 33.333 12.33 0.00 0.00 2.29
417 418 6.409524 AACATGCTTCTCAGAAAATGGAAA 57.590 33.333 12.33 0.00 0.00 3.13
418 419 6.183360 ACAAACATGCTTCTCAGAAAATGGAA 60.183 34.615 12.33 0.00 0.00 3.53
419 420 5.302568 ACAAACATGCTTCTCAGAAAATGGA 59.697 36.000 12.33 0.00 0.00 3.41
420 421 5.404366 CACAAACATGCTTCTCAGAAAATGG 59.596 40.000 12.33 1.09 0.00 3.16
421 422 5.107607 GCACAAACATGCTTCTCAGAAAATG 60.108 40.000 7.82 7.82 42.62 2.32
422 423 4.986659 GCACAAACATGCTTCTCAGAAAAT 59.013 37.500 0.00 0.00 42.62 1.82
423 424 4.362279 GCACAAACATGCTTCTCAGAAAA 58.638 39.130 0.00 0.00 42.62 2.29
424 425 3.243501 GGCACAAACATGCTTCTCAGAAA 60.244 43.478 0.00 0.00 45.38 2.52
425 426 2.294233 GGCACAAACATGCTTCTCAGAA 59.706 45.455 0.00 0.00 45.38 3.02
426 427 1.881973 GGCACAAACATGCTTCTCAGA 59.118 47.619 0.00 0.00 45.38 3.27
427 428 1.884579 AGGCACAAACATGCTTCTCAG 59.115 47.619 0.00 0.00 45.38 3.35
428 429 1.881973 GAGGCACAAACATGCTTCTCA 59.118 47.619 2.91 0.00 45.58 3.27
429 430 2.626088 GAGGCACAAACATGCTTCTC 57.374 50.000 2.91 0.00 45.58 2.87
432 433 0.877071 CGAGAGGCACAAACATGCTT 59.123 50.000 0.00 0.00 45.38 3.91
433 434 0.250467 ACGAGAGGCACAAACATGCT 60.250 50.000 0.00 0.00 45.38 3.79
434 435 1.438651 TACGAGAGGCACAAACATGC 58.561 50.000 0.00 0.00 45.34 4.06
435 436 4.481930 TTTTACGAGAGGCACAAACATG 57.518 40.909 0.00 0.00 0.00 3.21
436 437 4.336993 TGTTTTTACGAGAGGCACAAACAT 59.663 37.500 0.00 0.00 29.87 2.71
437 438 3.690139 TGTTTTTACGAGAGGCACAAACA 59.310 39.130 0.00 0.00 31.84 2.83
438 439 4.281525 TGTTTTTACGAGAGGCACAAAC 57.718 40.909 0.00 0.00 0.00 2.93
439 440 4.966965 TTGTTTTTACGAGAGGCACAAA 57.033 36.364 0.00 0.00 0.00 2.83
440 441 4.732355 GCTTTGTTTTTACGAGAGGCACAA 60.732 41.667 0.00 0.00 0.00 3.33
441 442 3.242936 GCTTTGTTTTTACGAGAGGCACA 60.243 43.478 0.00 0.00 0.00 4.57
442 443 3.297472 GCTTTGTTTTTACGAGAGGCAC 58.703 45.455 0.00 0.00 0.00 5.01
443 444 2.292292 GGCTTTGTTTTTACGAGAGGCA 59.708 45.455 0.00 0.00 0.00 4.75
444 445 2.664698 CGGCTTTGTTTTTACGAGAGGC 60.665 50.000 0.00 0.00 0.00 4.70
445 446 2.546789 ACGGCTTTGTTTTTACGAGAGG 59.453 45.455 0.00 0.00 0.00 3.69
446 447 3.541711 CACGGCTTTGTTTTTACGAGAG 58.458 45.455 0.00 0.00 0.00 3.20
447 448 2.286536 GCACGGCTTTGTTTTTACGAGA 60.287 45.455 0.00 0.00 0.00 4.04
448 449 2.041244 GCACGGCTTTGTTTTTACGAG 58.959 47.619 0.00 0.00 0.00 4.18
449 450 1.268640 GGCACGGCTTTGTTTTTACGA 60.269 47.619 0.00 0.00 0.00 3.43
450 451 1.125270 GGCACGGCTTTGTTTTTACG 58.875 50.000 0.00 0.00 0.00 3.18
451 452 2.211353 TGGCACGGCTTTGTTTTTAC 57.789 45.000 0.00 0.00 0.00 2.01
452 453 3.181475 TGAATGGCACGGCTTTGTTTTTA 60.181 39.130 0.00 0.00 0.00 1.52
453 454 2.209273 GAATGGCACGGCTTTGTTTTT 58.791 42.857 0.00 0.00 0.00 1.94
454 455 1.137872 TGAATGGCACGGCTTTGTTTT 59.862 42.857 0.00 0.00 0.00 2.43
455 456 0.749649 TGAATGGCACGGCTTTGTTT 59.250 45.000 0.00 0.00 0.00 2.83
456 457 0.031994 GTGAATGGCACGGCTTTGTT 59.968 50.000 0.00 0.00 37.83 2.83
457 458 1.659794 GTGAATGGCACGGCTTTGT 59.340 52.632 0.00 0.00 37.83 2.83
458 459 4.557942 GTGAATGGCACGGCTTTG 57.442 55.556 0.00 0.00 37.83 2.77
465 466 0.313672 TTTGCTTCCGTGAATGGCAC 59.686 50.000 0.00 0.00 44.21 5.01
466 467 1.035923 TTTTGCTTCCGTGAATGGCA 58.964 45.000 0.00 0.00 0.00 4.92
467 468 2.262211 GATTTTGCTTCCGTGAATGGC 58.738 47.619 0.00 0.00 0.00 4.40
468 469 3.574284 TGATTTTGCTTCCGTGAATGG 57.426 42.857 0.00 0.00 0.00 3.16
469 470 3.305094 GCATGATTTTGCTTCCGTGAATG 59.695 43.478 0.00 0.00 39.57 2.67
470 471 3.514645 GCATGATTTTGCTTCCGTGAAT 58.485 40.909 0.00 0.00 39.57 2.57
471 472 2.352617 GGCATGATTTTGCTTCCGTGAA 60.353 45.455 0.00 0.00 42.38 3.18
472 473 1.202114 GGCATGATTTTGCTTCCGTGA 59.798 47.619 0.00 0.00 42.38 4.35
473 474 1.203052 AGGCATGATTTTGCTTCCGTG 59.797 47.619 0.00 0.00 42.38 4.94
474 475 1.474077 GAGGCATGATTTTGCTTCCGT 59.526 47.619 0.00 0.00 41.44 4.69
475 476 1.747355 AGAGGCATGATTTTGCTTCCG 59.253 47.619 0.00 0.00 46.61 4.30
476 477 2.223433 CGAGAGGCATGATTTTGCTTCC 60.223 50.000 0.00 0.00 46.61 3.46
477 478 2.793933 GCGAGAGGCATGATTTTGCTTC 60.794 50.000 0.00 0.80 46.00 3.86
478 479 1.133790 GCGAGAGGCATGATTTTGCTT 59.866 47.619 0.00 0.00 42.38 3.91
479 480 0.737219 GCGAGAGGCATGATTTTGCT 59.263 50.000 0.00 0.00 42.38 3.91
480 481 0.590732 CGCGAGAGGCATGATTTTGC 60.591 55.000 0.00 0.00 43.84 3.68
481 482 1.009078 TCGCGAGAGGCATGATTTTG 58.991 50.000 3.71 0.00 43.84 2.44
482 483 3.458872 TCGCGAGAGGCATGATTTT 57.541 47.368 3.71 0.00 43.84 1.82
484 485 5.664863 TTGCTATCGCGAGAGGCATGATT 62.665 47.826 29.87 4.79 46.47 2.57
485 486 4.234209 TTGCTATCGCGAGAGGCATGAT 62.234 50.000 29.87 5.57 46.47 2.45
486 487 2.960540 TTGCTATCGCGAGAGGCATGA 61.961 52.381 29.87 14.90 46.47 3.07
487 488 0.598419 TTGCTATCGCGAGAGGCATG 60.598 55.000 29.87 7.71 46.47 4.06
488 489 0.104855 TTTGCTATCGCGAGAGGCAT 59.895 50.000 29.87 7.92 46.47 4.40
492 493 4.082441 GCATGTTTTTGCTATCGCGAGAG 61.082 47.826 25.72 25.72 40.93 3.20
493 494 2.223021 GCATGTTTTTGCTATCGCGAGA 60.223 45.455 16.66 9.71 41.49 4.04
494 495 2.104144 GCATGTTTTTGCTATCGCGAG 58.896 47.619 16.66 2.31 39.57 5.03
495 496 1.466558 TGCATGTTTTTGCTATCGCGA 59.533 42.857 13.09 13.09 43.18 5.87
496 497 1.893759 TGCATGTTTTTGCTATCGCG 58.106 45.000 0.00 0.00 43.18 5.87
497 498 4.845621 AAATGCATGTTTTTGCTATCGC 57.154 36.364 0.00 0.00 43.18 4.58
498 499 6.819437 TGAAAAATGCATGTTTTTGCTATCG 58.181 32.000 15.98 0.00 40.35 2.92
499 500 8.444715 TCATGAAAAATGCATGTTTTTGCTATC 58.555 29.630 15.98 2.58 42.77 2.08
500 501 8.325421 TCATGAAAAATGCATGTTTTTGCTAT 57.675 26.923 15.98 5.27 42.77 2.97
501 502 7.725818 TCATGAAAAATGCATGTTTTTGCTA 57.274 28.000 15.98 3.40 42.77 3.49
502 503 6.621316 TCATGAAAAATGCATGTTTTTGCT 57.379 29.167 15.98 0.00 42.77 3.91
503 504 7.681125 TTTCATGAAAAATGCATGTTTTTGC 57.319 28.000 18.45 5.73 42.77 3.68
549 550 8.032451 CAGTCTTCCTTAACTTTTGGACAAAAA 58.968 33.333 10.95 0.25 39.49 1.94
550 551 7.394923 TCAGTCTTCCTTAACTTTTGGACAAAA 59.605 33.333 9.58 9.58 37.90 2.44
551 552 6.887545 TCAGTCTTCCTTAACTTTTGGACAAA 59.112 34.615 0.00 0.00 0.00 2.83
552 553 6.419791 TCAGTCTTCCTTAACTTTTGGACAA 58.580 36.000 0.00 0.00 0.00 3.18
553 554 5.996644 TCAGTCTTCCTTAACTTTTGGACA 58.003 37.500 0.00 0.00 0.00 4.02
554 555 6.710744 TCATCAGTCTTCCTTAACTTTTGGAC 59.289 38.462 0.00 0.00 0.00 4.02
555 556 6.837312 TCATCAGTCTTCCTTAACTTTTGGA 58.163 36.000 0.00 0.00 0.00 3.53
556 557 7.510549 TTCATCAGTCTTCCTTAACTTTTGG 57.489 36.000 0.00 0.00 0.00 3.28
557 558 9.801873 TTTTTCATCAGTCTTCCTTAACTTTTG 57.198 29.630 0.00 0.00 0.00 2.44
559 560 8.138074 GCTTTTTCATCAGTCTTCCTTAACTTT 58.862 33.333 0.00 0.00 0.00 2.66
560 561 7.285401 TGCTTTTTCATCAGTCTTCCTTAACTT 59.715 33.333 0.00 0.00 0.00 2.66
561 562 6.772716 TGCTTTTTCATCAGTCTTCCTTAACT 59.227 34.615 0.00 0.00 0.00 2.24
562 563 6.970484 TGCTTTTTCATCAGTCTTCCTTAAC 58.030 36.000 0.00 0.00 0.00 2.01
563 564 7.581213 TTGCTTTTTCATCAGTCTTCCTTAA 57.419 32.000 0.00 0.00 0.00 1.85
564 565 7.581213 TTTGCTTTTTCATCAGTCTTCCTTA 57.419 32.000 0.00 0.00 0.00 2.69
565 566 6.469782 TTTGCTTTTTCATCAGTCTTCCTT 57.530 33.333 0.00 0.00 0.00 3.36
566 567 6.469782 TTTTGCTTTTTCATCAGTCTTCCT 57.530 33.333 0.00 0.00 0.00 3.36
567 568 6.292542 GCTTTTTGCTTTTTCATCAGTCTTCC 60.293 38.462 0.00 0.00 38.95 3.46
568 569 6.292542 GGCTTTTTGCTTTTTCATCAGTCTTC 60.293 38.462 0.00 0.00 42.39 2.87
569 570 5.525012 GGCTTTTTGCTTTTTCATCAGTCTT 59.475 36.000 0.00 0.00 42.39 3.01
570 571 5.052481 GGCTTTTTGCTTTTTCATCAGTCT 58.948 37.500 0.00 0.00 42.39 3.24
571 572 4.810491 TGGCTTTTTGCTTTTTCATCAGTC 59.190 37.500 0.00 0.00 42.39 3.51
572 573 4.768583 TGGCTTTTTGCTTTTTCATCAGT 58.231 34.783 0.00 0.00 42.39 3.41
573 574 5.738118 TTGGCTTTTTGCTTTTTCATCAG 57.262 34.783 0.00 0.00 42.39 2.90
574 575 6.506500 TTTTGGCTTTTTGCTTTTTCATCA 57.493 29.167 0.00 0.00 42.39 3.07
598 599 9.701098 GGATTTTTAAACGGGTTTTCTAGATTT 57.299 29.630 1.70 0.00 34.23 2.17
599 600 8.862085 TGGATTTTTAAACGGGTTTTCTAGATT 58.138 29.630 1.70 0.00 34.23 2.40
600 601 8.411991 TGGATTTTTAAACGGGTTTTCTAGAT 57.588 30.769 1.70 0.00 34.23 1.98
601 602 7.820578 TGGATTTTTAAACGGGTTTTCTAGA 57.179 32.000 1.70 0.00 34.23 2.43
602 603 8.874744 TTTGGATTTTTAAACGGGTTTTCTAG 57.125 30.769 1.70 0.00 34.23 2.43
603 604 9.662947 TTTTTGGATTTTTAAACGGGTTTTCTA 57.337 25.926 1.70 0.00 34.23 2.10
604 605 8.452534 GTTTTTGGATTTTTAAACGGGTTTTCT 58.547 29.630 1.70 0.00 34.23 2.52
605 606 8.235226 TGTTTTTGGATTTTTAAACGGGTTTTC 58.765 29.630 1.70 0.00 34.16 2.29
606 607 8.107399 TGTTTTTGGATTTTTAAACGGGTTTT 57.893 26.923 1.70 0.00 34.16 2.43
607 608 7.683437 TGTTTTTGGATTTTTAAACGGGTTT 57.317 28.000 2.05 2.05 34.16 3.27
608 609 7.337184 ACATGTTTTTGGATTTTTAAACGGGTT 59.663 29.630 0.00 0.00 34.16 4.11
609 610 6.824196 ACATGTTTTTGGATTTTTAAACGGGT 59.176 30.769 0.00 0.00 34.16 5.28
610 611 7.011482 TCACATGTTTTTGGATTTTTAAACGGG 59.989 33.333 0.00 0.00 34.16 5.28
611 612 7.910304 TCACATGTTTTTGGATTTTTAAACGG 58.090 30.769 0.00 0.00 34.16 4.44
612 613 9.760660 TTTCACATGTTTTTGGATTTTTAAACG 57.239 25.926 0.00 0.00 34.16 3.60
619 620 9.838975 GTTTTTCTTTCACATGTTTTTGGATTT 57.161 25.926 0.00 0.00 0.00 2.17
620 621 9.007901 TGTTTTTCTTTCACATGTTTTTGGATT 57.992 25.926 0.00 0.00 0.00 3.01
621 622 8.558973 TGTTTTTCTTTCACATGTTTTTGGAT 57.441 26.923 0.00 0.00 0.00 3.41
622 623 7.969536 TGTTTTTCTTTCACATGTTTTTGGA 57.030 28.000 0.00 0.00 0.00 3.53
623 624 9.455847 TTTTGTTTTTCTTTCACATGTTTTTGG 57.544 25.926 0.00 0.00 0.00 3.28
627 628 9.838975 GGATTTTTGTTTTTCTTTCACATGTTT 57.161 25.926 0.00 0.00 0.00 2.83
628 629 9.007901 TGGATTTTTGTTTTTCTTTCACATGTT 57.992 25.926 0.00 0.00 0.00 2.71
629 630 8.558973 TGGATTTTTGTTTTTCTTTCACATGT 57.441 26.923 0.00 0.00 0.00 3.21
630 631 8.881743 TCTGGATTTTTGTTTTTCTTTCACATG 58.118 29.630 0.00 0.00 0.00 3.21
631 632 9.447157 TTCTGGATTTTTGTTTTTCTTTCACAT 57.553 25.926 0.00 0.00 0.00 3.21
632 633 8.839310 TTCTGGATTTTTGTTTTTCTTTCACA 57.161 26.923 0.00 0.00 0.00 3.58
633 634 9.150348 TCTTCTGGATTTTTGTTTTTCTTTCAC 57.850 29.630 0.00 0.00 0.00 3.18
634 635 9.717942 TTCTTCTGGATTTTTGTTTTTCTTTCA 57.282 25.926 0.00 0.00 0.00 2.69
637 638 8.655970 CGTTTCTTCTGGATTTTTGTTTTTCTT 58.344 29.630 0.00 0.00 0.00 2.52
638 639 7.201522 GCGTTTCTTCTGGATTTTTGTTTTTCT 60.202 33.333 0.00 0.00 0.00 2.52
639 640 6.899771 GCGTTTCTTCTGGATTTTTGTTTTTC 59.100 34.615 0.00 0.00 0.00 2.29
640 641 6.183360 GGCGTTTCTTCTGGATTTTTGTTTTT 60.183 34.615 0.00 0.00 0.00 1.94
641 642 5.293324 GGCGTTTCTTCTGGATTTTTGTTTT 59.707 36.000 0.00 0.00 0.00 2.43
642 643 4.808895 GGCGTTTCTTCTGGATTTTTGTTT 59.191 37.500 0.00 0.00 0.00 2.83
643 644 4.368315 GGCGTTTCTTCTGGATTTTTGTT 58.632 39.130 0.00 0.00 0.00 2.83
644 645 3.243737 GGGCGTTTCTTCTGGATTTTTGT 60.244 43.478 0.00 0.00 0.00 2.83
645 646 3.243704 TGGGCGTTTCTTCTGGATTTTTG 60.244 43.478 0.00 0.00 0.00 2.44
646 647 2.962421 TGGGCGTTTCTTCTGGATTTTT 59.038 40.909 0.00 0.00 0.00 1.94
647 648 2.558359 CTGGGCGTTTCTTCTGGATTTT 59.442 45.455 0.00 0.00 0.00 1.82
648 649 2.162681 CTGGGCGTTTCTTCTGGATTT 58.837 47.619 0.00 0.00 0.00 2.17
649 650 1.351017 TCTGGGCGTTTCTTCTGGATT 59.649 47.619 0.00 0.00 0.00 3.01
650 651 0.984230 TCTGGGCGTTTCTTCTGGAT 59.016 50.000 0.00 0.00 0.00 3.41
651 652 0.321671 CTCTGGGCGTTTCTTCTGGA 59.678 55.000 0.00 0.00 0.00 3.86
652 653 1.301677 GCTCTGGGCGTTTCTTCTGG 61.302 60.000 0.00 0.00 0.00 3.86
653 654 2.166270 GCTCTGGGCGTTTCTTCTG 58.834 57.895 0.00 0.00 0.00 3.02
654 655 4.703703 GCTCTGGGCGTTTCTTCT 57.296 55.556 0.00 0.00 0.00 2.85
663 664 2.029666 ACATATCGCGCTCTGGGC 59.970 61.111 5.56 0.00 38.15 5.36
664 665 1.665916 CCACATATCGCGCTCTGGG 60.666 63.158 5.56 0.00 0.00 4.45
665 666 2.313172 GCCACATATCGCGCTCTGG 61.313 63.158 5.56 2.32 0.00 3.86
666 667 2.652079 CGCCACATATCGCGCTCTG 61.652 63.158 5.56 0.00 42.17 3.35
667 668 2.355126 CGCCACATATCGCGCTCT 60.355 61.111 5.56 0.00 42.17 4.09
668 669 3.406361 CCGCCACATATCGCGCTC 61.406 66.667 5.56 0.00 46.88 5.03
672 673 4.017877 GCTGCCGCCACATATCGC 62.018 66.667 0.00 0.00 0.00 4.58
689 690 4.228097 CATTTGGCGCGCTCTCGG 62.228 66.667 32.29 14.39 35.95 4.63
690 691 3.188100 TCATTTGGCGCGCTCTCG 61.188 61.111 32.29 15.79 39.07 4.04
691 692 2.401195 GTCATTTGGCGCGCTCTC 59.599 61.111 32.29 15.45 0.00 3.20
692 693 3.490759 CGTCATTTGGCGCGCTCT 61.491 61.111 32.29 10.28 35.94 4.09
699 700 2.301902 CTGAGAGCGCGTCATTTGGC 62.302 60.000 14.78 0.00 0.00 4.52
700 701 1.712081 CTGAGAGCGCGTCATTTGG 59.288 57.895 14.78 1.51 0.00 3.28
701 702 1.059994 GCTGAGAGCGCGTCATTTG 59.940 57.895 14.78 6.16 0.00 2.32
702 703 2.103042 GGCTGAGAGCGCGTCATTT 61.103 57.895 14.78 0.00 43.62 2.32
703 704 1.667154 TAGGCTGAGAGCGCGTCATT 61.667 55.000 14.78 7.58 43.62 2.57
704 705 2.121538 TAGGCTGAGAGCGCGTCAT 61.122 57.895 14.78 4.66 43.62 3.06
705 706 2.750237 TAGGCTGAGAGCGCGTCA 60.750 61.111 8.43 13.87 43.62 4.35
706 707 2.278271 GTAGGCTGAGAGCGCGTC 60.278 66.667 8.43 3.41 43.62 5.19
707 708 3.827898 GGTAGGCTGAGAGCGCGT 61.828 66.667 8.43 0.00 43.62 6.01
708 709 4.577246 GGGTAGGCTGAGAGCGCG 62.577 72.222 0.00 0.00 43.62 6.86
709 710 3.461773 TGGGTAGGCTGAGAGCGC 61.462 66.667 0.00 0.00 43.62 5.92
710 711 1.888436 TTGTGGGTAGGCTGAGAGCG 61.888 60.000 0.00 0.00 43.62 5.03
711 712 0.324943 TTTGTGGGTAGGCTGAGAGC 59.675 55.000 0.00 0.00 41.46 4.09
712 713 2.237143 TCATTTGTGGGTAGGCTGAGAG 59.763 50.000 0.00 0.00 0.00 3.20
713 714 2.265367 TCATTTGTGGGTAGGCTGAGA 58.735 47.619 0.00 0.00 0.00 3.27
714 715 2.787473 TCATTTGTGGGTAGGCTGAG 57.213 50.000 0.00 0.00 0.00 3.35
715 716 2.419990 CGATCATTTGTGGGTAGGCTGA 60.420 50.000 0.00 0.00 0.00 4.26
716 717 1.942657 CGATCATTTGTGGGTAGGCTG 59.057 52.381 0.00 0.00 0.00 4.85
717 718 1.559682 ACGATCATTTGTGGGTAGGCT 59.440 47.619 0.00 0.00 0.00 4.58
718 719 2.038387 ACGATCATTTGTGGGTAGGC 57.962 50.000 0.00 0.00 0.00 3.93
719 720 3.605634 TCAACGATCATTTGTGGGTAGG 58.394 45.455 0.00 0.00 0.00 3.18
720 721 4.503910 TCTCAACGATCATTTGTGGGTAG 58.496 43.478 0.00 0.00 0.00 3.18
721 722 4.503910 CTCTCAACGATCATTTGTGGGTA 58.496 43.478 0.00 0.00 0.00 3.69
722 723 3.338249 CTCTCAACGATCATTTGTGGGT 58.662 45.455 0.00 0.00 0.00 4.51
723 724 2.679837 CCTCTCAACGATCATTTGTGGG 59.320 50.000 0.00 0.00 0.00 4.61
724 725 2.096496 GCCTCTCAACGATCATTTGTGG 59.904 50.000 0.00 2.31 0.00 4.17
725 726 3.005554 AGCCTCTCAACGATCATTTGTG 58.994 45.455 0.00 0.00 0.00 3.33
726 727 3.340814 AGCCTCTCAACGATCATTTGT 57.659 42.857 0.00 0.00 0.00 2.83
727 728 4.656041 GAAAGCCTCTCAACGATCATTTG 58.344 43.478 0.00 0.00 0.00 2.32
728 729 3.372206 CGAAAGCCTCTCAACGATCATTT 59.628 43.478 0.00 0.00 0.00 2.32
729 730 2.932614 CGAAAGCCTCTCAACGATCATT 59.067 45.455 0.00 0.00 0.00 2.57
730 731 2.166459 TCGAAAGCCTCTCAACGATCAT 59.834 45.455 0.00 0.00 0.00 2.45
731 732 1.544246 TCGAAAGCCTCTCAACGATCA 59.456 47.619 0.00 0.00 0.00 2.92
732 733 2.279582 TCGAAAGCCTCTCAACGATC 57.720 50.000 0.00 0.00 0.00 3.69
733 734 2.231478 TCTTCGAAAGCCTCTCAACGAT 59.769 45.455 0.00 0.00 0.00 3.73
734 735 1.611977 TCTTCGAAAGCCTCTCAACGA 59.388 47.619 0.00 0.00 0.00 3.85
735 736 2.065993 TCTTCGAAAGCCTCTCAACG 57.934 50.000 0.00 0.00 0.00 4.10
736 737 2.158645 GCTTCTTCGAAAGCCTCTCAAC 59.841 50.000 10.18 0.00 44.75 3.18
737 738 2.417719 GCTTCTTCGAAAGCCTCTCAA 58.582 47.619 10.18 0.00 44.75 3.02
738 739 2.086054 GCTTCTTCGAAAGCCTCTCA 57.914 50.000 10.18 0.00 44.75 3.27
744 745 1.057976 CGAGCGCTTCTTCGAAAGC 59.942 57.895 13.26 11.10 46.54 3.51
745 746 0.363846 GACGAGCGCTTCTTCGAAAG 59.636 55.000 21.54 0.00 0.00 2.62
746 747 0.318360 TGACGAGCGCTTCTTCGAAA 60.318 50.000 21.54 7.70 0.00 3.46
747 748 0.318360 TTGACGAGCGCTTCTTCGAA 60.318 50.000 21.54 8.02 0.00 3.71
748 749 1.002250 GTTGACGAGCGCTTCTTCGA 61.002 55.000 21.54 10.98 0.00 3.71
749 750 1.004277 AGTTGACGAGCGCTTCTTCG 61.004 55.000 13.26 13.91 0.00 3.79
750 751 1.914700 CTAGTTGACGAGCGCTTCTTC 59.085 52.381 13.26 9.22 0.00 2.87
751 752 1.269998 ACTAGTTGACGAGCGCTTCTT 59.730 47.619 13.26 0.00 0.00 2.52
752 753 0.882474 ACTAGTTGACGAGCGCTTCT 59.118 50.000 13.26 0.00 0.00 2.85
753 754 1.387084 CAACTAGTTGACGAGCGCTTC 59.613 52.381 28.17 6.79 42.93 3.86
754 755 1.419374 CAACTAGTTGACGAGCGCTT 58.581 50.000 28.17 0.00 42.93 4.68
755 756 1.009389 GCAACTAGTTGACGAGCGCT 61.009 55.000 34.43 11.27 42.93 5.92
756 757 1.009389 AGCAACTAGTTGACGAGCGC 61.009 55.000 34.43 19.34 42.93 5.92
757 758 1.419374 AAGCAACTAGTTGACGAGCG 58.581 50.000 34.43 10.73 42.93 5.03
758 759 3.879932 AAAAGCAACTAGTTGACGAGC 57.120 42.857 34.43 20.67 42.93 5.03
759 760 8.116753 CCATATAAAAAGCAACTAGTTGACGAG 58.883 37.037 34.43 12.13 42.93 4.18
760 761 7.413657 GCCATATAAAAAGCAACTAGTTGACGA 60.414 37.037 34.43 15.32 42.93 4.20
761 762 6.687105 GCCATATAAAAAGCAACTAGTTGACG 59.313 38.462 34.43 12.85 42.93 4.35
762 763 6.687105 CGCCATATAAAAAGCAACTAGTTGAC 59.313 38.462 34.43 24.98 42.93 3.18
763 764 6.676943 GCGCCATATAAAAAGCAACTAGTTGA 60.677 38.462 34.43 16.01 42.93 3.18
764 765 5.455525 GCGCCATATAAAAAGCAACTAGTTG 59.544 40.000 27.85 27.85 43.14 3.16
765 766 5.449999 GGCGCCATATAAAAAGCAACTAGTT 60.450 40.000 24.80 1.12 0.00 2.24
766 767 4.036380 GGCGCCATATAAAAAGCAACTAGT 59.964 41.667 24.80 0.00 0.00 2.57
767 768 4.275936 AGGCGCCATATAAAAAGCAACTAG 59.724 41.667 31.54 0.00 0.00 2.57
768 769 4.204012 AGGCGCCATATAAAAAGCAACTA 58.796 39.130 31.54 0.00 0.00 2.24
769 770 3.023832 AGGCGCCATATAAAAAGCAACT 58.976 40.909 31.54 0.00 0.00 3.16
770 771 3.436700 AGGCGCCATATAAAAAGCAAC 57.563 42.857 31.54 0.00 0.00 4.17
771 772 5.782893 ATTAGGCGCCATATAAAAAGCAA 57.217 34.783 31.54 4.76 0.00 3.91
772 773 5.414454 CCTATTAGGCGCCATATAAAAAGCA 59.586 40.000 31.54 3.24 0.00 3.91
773 774 5.646360 TCCTATTAGGCGCCATATAAAAAGC 59.354 40.000 31.54 0.00 34.61 3.51
774 775 6.316390 CCTCCTATTAGGCGCCATATAAAAAG 59.684 42.308 31.54 18.02 34.61 2.27
775 776 6.177610 CCTCCTATTAGGCGCCATATAAAAA 58.822 40.000 31.54 10.86 34.61 1.94
776 777 5.249852 ACCTCCTATTAGGCGCCATATAAAA 59.750 40.000 31.54 12.69 40.62 1.52
777 778 4.781087 ACCTCCTATTAGGCGCCATATAAA 59.219 41.667 31.54 14.57 40.62 1.40
778 779 4.359105 ACCTCCTATTAGGCGCCATATAA 58.641 43.478 31.54 19.11 40.62 0.98
779 780 3.958798 GACCTCCTATTAGGCGCCATATA 59.041 47.826 31.54 22.58 40.62 0.86
780 781 2.766828 GACCTCCTATTAGGCGCCATAT 59.233 50.000 31.54 22.68 40.62 1.78
781 782 2.176889 GACCTCCTATTAGGCGCCATA 58.823 52.381 31.54 17.58 40.62 2.74
782 783 0.977395 GACCTCCTATTAGGCGCCAT 59.023 55.000 31.54 17.37 40.62 4.40
783 784 1.119574 GGACCTCCTATTAGGCGCCA 61.120 60.000 31.54 9.64 40.62 5.69
784 785 1.672320 GGACCTCCTATTAGGCGCC 59.328 63.158 21.89 21.89 40.62 6.53
785 786 1.119574 TGGGACCTCCTATTAGGCGC 61.120 60.000 0.00 0.00 40.62 6.53
786 787 1.645710 ATGGGACCTCCTATTAGGCG 58.354 55.000 4.73 0.00 40.62 5.52
787 788 4.455070 AAAATGGGACCTCCTATTAGGC 57.545 45.455 4.73 0.00 44.98 3.93
788 789 6.267492 AGAAAAATGGGACCTCCTATTAGG 57.733 41.667 3.07 3.07 44.98 2.69
789 790 8.495260 ACTAAGAAAAATGGGACCTCCTATTAG 58.505 37.037 3.53 0.12 44.98 1.73
790 791 8.401955 ACTAAGAAAAATGGGACCTCCTATTA 57.598 34.615 3.53 0.00 44.98 0.98
792 793 6.678857 AGACTAAGAAAAATGGGACCTCCTAT 59.321 38.462 0.00 0.00 39.03 2.57
801 802 4.332819 CGTGGCTAGACTAAGAAAAATGGG 59.667 45.833 0.00 0.00 0.00 4.00
810 811 4.445452 TGGTTAACGTGGCTAGACTAAG 57.555 45.455 0.00 0.00 0.00 2.18
812 813 4.870123 TTTGGTTAACGTGGCTAGACTA 57.130 40.909 0.00 0.00 0.00 2.59
856 857 7.095187 TGCGTTTGCCTAAAAGAAAAAGAAAAA 60.095 29.630 0.00 0.00 41.78 1.94
857 858 6.369065 TGCGTTTGCCTAAAAGAAAAAGAAAA 59.631 30.769 0.00 0.00 41.78 2.29
858 859 5.869888 TGCGTTTGCCTAAAAGAAAAAGAAA 59.130 32.000 0.00 0.00 41.78 2.52
859 860 5.411781 TGCGTTTGCCTAAAAGAAAAAGAA 58.588 33.333 0.00 0.00 41.78 2.52
860 861 5.000012 TGCGTTTGCCTAAAAGAAAAAGA 58.000 34.783 0.00 0.00 41.78 2.52
861 862 5.710613 TTGCGTTTGCCTAAAAGAAAAAG 57.289 34.783 0.00 0.00 41.78 2.27
862 863 5.235401 GGATTGCGTTTGCCTAAAAGAAAAA 59.765 36.000 0.00 0.00 41.78 1.94
863 864 4.747605 GGATTGCGTTTGCCTAAAAGAAAA 59.252 37.500 0.00 0.00 41.78 2.29
864 865 4.202161 TGGATTGCGTTTGCCTAAAAGAAA 60.202 37.500 0.00 0.00 41.78 2.52
865 866 3.319405 TGGATTGCGTTTGCCTAAAAGAA 59.681 39.130 0.00 0.00 41.78 2.52
866 867 2.887783 TGGATTGCGTTTGCCTAAAAGA 59.112 40.909 0.00 0.00 41.78 2.52
867 868 3.057596 TCTGGATTGCGTTTGCCTAAAAG 60.058 43.478 0.00 0.00 41.78 2.27
868 869 2.887783 TCTGGATTGCGTTTGCCTAAAA 59.112 40.909 0.00 0.00 41.78 1.52
869 870 2.487762 CTCTGGATTGCGTTTGCCTAAA 59.512 45.455 0.00 0.00 41.78 1.85
870 871 2.083774 CTCTGGATTGCGTTTGCCTAA 58.916 47.619 0.00 0.00 41.78 2.69
871 872 1.737838 CTCTGGATTGCGTTTGCCTA 58.262 50.000 0.00 0.00 41.78 3.93
872 873 1.589716 GCTCTGGATTGCGTTTGCCT 61.590 55.000 0.00 0.00 41.78 4.75
873 874 1.153958 GCTCTGGATTGCGTTTGCC 60.154 57.895 0.00 0.00 41.78 4.52
874 875 1.153958 GGCTCTGGATTGCGTTTGC 60.154 57.895 0.00 0.00 43.20 3.68
875 876 1.135315 CGGCTCTGGATTGCGTTTG 59.865 57.895 0.00 0.00 0.00 2.93
876 877 1.003839 TCGGCTCTGGATTGCGTTT 60.004 52.632 0.00 0.00 0.00 3.60
883 884 1.395826 GGTGCTACTCGGCTCTGGAT 61.396 60.000 0.00 0.00 0.00 3.41
888 889 1.068250 GGATGGTGCTACTCGGCTC 59.932 63.158 0.00 0.00 0.00 4.70
904 905 6.213600 GGGCTGATAGTCTATTTTATCTGGGA 59.786 42.308 0.00 0.00 0.00 4.37
955 956 0.254747 CGGCAGGAAAGGGGTAATGA 59.745 55.000 0.00 0.00 0.00 2.57
1089 1099 2.042843 GGGAAGCGGAGGAGGAGA 60.043 66.667 0.00 0.00 0.00 3.71
1194 1204 2.038007 AGCTCGAAGCAGGAGGGA 59.962 61.111 9.09 0.00 45.56 4.20
1422 1432 1.062206 GCGGAGAAGGTAGTCGTCG 59.938 63.158 0.00 0.00 0.00 5.12
1540 1550 2.418910 CCTCGATGGCAGAGACCGT 61.419 63.158 5.39 0.00 37.93 4.83
1651 1661 1.654023 GGCGAAATGTAGGGTGTGGC 61.654 60.000 0.00 0.00 0.00 5.01
1708 1718 3.123620 GGCACGCTTCTCAGCCTG 61.124 66.667 0.00 0.00 44.06 4.85
1878 1888 1.017177 GCACCGCCGTGTGAATCTTA 61.017 55.000 9.42 0.00 42.39 2.10
1940 1950 0.610232 ATCCTTTGCTGCCACCACTC 60.610 55.000 0.00 0.00 0.00 3.51
2007 2017 0.865111 CCAAATTCACAGCACGTCGA 59.135 50.000 0.00 0.00 0.00 4.20
2175 2185 2.421388 GGGCATCAGGCTTACATACACA 60.421 50.000 0.00 0.00 44.01 3.72
2205 2215 8.455903 AGATATCATCATCCGTTCAACAATTT 57.544 30.769 5.32 0.00 0.00 1.82
2260 2270 3.494045 TGTGTCGTCTCTTCATAGCAG 57.506 47.619 0.00 0.00 0.00 4.24
2271 2281 2.755103 TGTGCAGATAGATGTGTCGTCT 59.245 45.455 0.00 0.00 33.90 4.18
2274 2284 2.798847 CCATGTGCAGATAGATGTGTCG 59.201 50.000 0.00 0.00 0.00 4.35
2343 2353 5.654650 TGAAAAGAAAAACTAGCAGGTTGGA 59.345 36.000 0.00 0.00 0.00 3.53
2349 2359 6.377327 TGTCCTGAAAAGAAAAACTAGCAG 57.623 37.500 0.00 0.00 0.00 4.24
2364 2374 5.939883 CAGTTCTCCAATTACATGTCCTGAA 59.060 40.000 0.00 0.00 0.00 3.02
2371 2381 4.264253 TCCTGCAGTTCTCCAATTACATG 58.736 43.478 13.81 0.00 0.00 3.21
2379 2389 2.237143 CTGGTATTCCTGCAGTTCTCCA 59.763 50.000 13.81 12.72 34.23 3.86
2606 2623 7.340122 TCTCTCTGACAATATAAGACCAGTG 57.660 40.000 0.00 0.00 0.00 3.66
2719 2736 1.933853 GGCTATAACTCCAACTGTGCG 59.066 52.381 0.00 0.00 0.00 5.34
2980 3012 2.902705 AGTGCTTACGTGAGGACAAA 57.097 45.000 28.80 0.00 40.08 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.