Multiple sequence alignment - TraesCS7A01G206700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G206700 chr7A 100.000 2876 0 0 1 2876 169305908 169303033 0.000000e+00 5312.0
1 TraesCS7A01G206700 chr7B 95.176 2073 79 12 386 2445 132111147 132109083 0.000000e+00 3254.0
2 TraesCS7A01G206700 chr7B 89.858 424 36 5 2460 2876 132109096 132108673 3.260000e-149 538.0
3 TraesCS7A01G206700 chr7B 96.429 140 5 0 62 201 132111666 132111527 6.200000e-57 231.0
4 TraesCS7A01G206700 chr7B 100.000 41 0 0 4 44 132111692 132111652 3.070000e-10 76.8
5 TraesCS7A01G206700 chr7D 93.211 2180 84 17 281 2445 167558506 167556376 0.000000e+00 3147.0
6 TraesCS7A01G206700 chr7D 90.135 223 14 4 2479 2695 167555207 167554987 1.690000e-72 283.0
7 TraesCS7A01G206700 chr7D 94.406 143 6 2 2736 2876 167554994 167554852 4.820000e-53 219.0
8 TraesCS7A01G206700 chr7D 89.286 168 15 2 116 283 167559760 167559596 1.040000e-49 207.0
9 TraesCS7A01G206700 chr7D 79.741 232 31 9 320 537 167564350 167564121 1.380000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G206700 chr7A 169303033 169305908 2875 True 5312.00 5312 100.00000 1 2876 1 chr7A.!!$R1 2875
1 TraesCS7A01G206700 chr7B 132108673 132111692 3019 True 1024.95 3254 95.36575 4 2876 4 chr7B.!!$R1 2872
2 TraesCS7A01G206700 chr7D 167554852 167559760 4908 True 964.00 3147 91.75950 116 2876 4 chr7D.!!$R2 2760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 1841 0.470341 GCTTTAGTAGGGGAGCTGGG 59.530 60.0 0.0 0.0 32.54 4.45 F
717 2079 1.459455 TTGCATTGTCCCCAACCGTG 61.459 55.0 0.0 0.0 32.26 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 2685 0.391130 TTTACGCAGGCAGGTAGCTG 60.391 55.0 17.67 17.67 44.79 4.24 R
2566 5116 0.599991 TCGTCGCATGAAGCAACACT 60.600 50.0 0.00 0.00 46.13 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.583073 ACATGTTTTCCTACAAGTTCCCAC 59.417 41.667 0.00 0.00 0.00 4.61
44 45 4.513406 TGTTTTCCTACAAGTTCCCACT 57.487 40.909 0.00 0.00 33.11 4.00
45 46 4.862371 TGTTTTCCTACAAGTTCCCACTT 58.138 39.130 0.00 0.00 44.72 3.16
46 47 5.265989 TGTTTTCCTACAAGTTCCCACTTT 58.734 37.500 0.00 0.00 40.66 2.66
47 48 5.717654 TGTTTTCCTACAAGTTCCCACTTTT 59.282 36.000 0.00 0.00 40.66 2.27
48 49 6.211785 TGTTTTCCTACAAGTTCCCACTTTTT 59.788 34.615 0.00 0.00 40.66 1.94
73 74 6.947644 TTTGAGTTAAACCTACAAGTTCCC 57.052 37.500 0.00 0.00 0.00 3.97
74 75 5.633655 TGAGTTAAACCTACAAGTTCCCA 57.366 39.130 0.00 0.00 0.00 4.37
201 202 8.828688 TTACTAGGCTAAGAAAAGACAAGAAC 57.171 34.615 0.00 0.00 0.00 3.01
231 232 2.637947 GCCAGCCCAAAAAGAAAAACA 58.362 42.857 0.00 0.00 0.00 2.83
237 238 4.629634 AGCCCAAAAAGAAAAACAAACGAG 59.370 37.500 0.00 0.00 0.00 4.18
238 239 4.627900 GCCCAAAAAGAAAAACAAACGAGA 59.372 37.500 0.00 0.00 0.00 4.04
243 244 8.865001 CCAAAAAGAAAAACAAACGAGATACAA 58.135 29.630 0.00 0.00 0.00 2.41
264 265 5.128335 ACAACTATGATGACATCAGCTGAGA 59.872 40.000 22.96 6.28 43.53 3.27
313 1406 2.839228 AGACCAGTTCTAGCCAATCCT 58.161 47.619 0.00 0.00 30.17 3.24
341 1434 7.011202 GCAGTCTGTACTATGCGCTATATACTA 59.989 40.741 9.73 0.00 33.48 1.82
342 1435 8.880750 CAGTCTGTACTATGCGCTATATACTAA 58.119 37.037 9.73 0.00 33.48 2.24
355 1448 6.347969 CGCTATATACTAACTCGTTGGCACTA 60.348 42.308 0.00 0.00 0.00 2.74
373 1466 7.118723 TGGCACTAATTATTTGAGGATCTTGT 58.881 34.615 0.00 0.00 34.92 3.16
418 1774 2.612212 AGACTAACCAAACGTTGCACAG 59.388 45.455 0.00 0.00 35.79 3.66
436 1792 8.540388 GTTGCACAGATCCCCTAATATATTAGA 58.460 37.037 27.18 12.90 41.72 2.10
463 1819 1.960689 TGTTGTCGATGAGGTCAGACA 59.039 47.619 2.17 0.00 38.04 3.41
484 1841 0.470341 GCTTTAGTAGGGGAGCTGGG 59.530 60.000 0.00 0.00 32.54 4.45
502 1859 2.126228 CGTCGGCGGCTTGTTCTA 60.126 61.111 10.76 0.00 0.00 2.10
514 1871 4.442893 CGGCTTGTTCTAATGGGATAGTGA 60.443 45.833 0.00 0.00 0.00 3.41
520 1877 8.908786 TTGTTCTAATGGGATAGTGATCATTC 57.091 34.615 0.00 0.00 33.27 2.67
583 1940 5.123186 TGTGTGTTCTGTTTTGTACTTCTGG 59.877 40.000 0.00 0.00 0.00 3.86
717 2079 1.459455 TTGCATTGTCCCCAACCGTG 61.459 55.000 0.00 0.00 32.26 4.94
767 2129 2.215942 ACCAAAGGAATGCCTGGTAC 57.784 50.000 1.54 0.00 46.28 3.34
927 2298 2.459934 CGTTCCAGCTTTTGTTGTTCC 58.540 47.619 0.00 0.00 0.00 3.62
1160 2534 4.262617 TGCTAGTAGTATCTATCAGCCGG 58.737 47.826 0.00 0.00 0.00 6.13
1195 2569 2.910688 TTCTTTTGGCTCTGACGACT 57.089 45.000 0.00 0.00 0.00 4.18
1311 2685 0.978907 TCAAGGGGAAGGTTCGTACC 59.021 55.000 2.44 2.44 45.39 3.34
1537 2916 1.268352 TGCACGCTGACCAAATTAACC 59.732 47.619 0.00 0.00 0.00 2.85
1545 2924 2.817258 TGACCAAATTAACCGCCTCTTG 59.183 45.455 0.00 0.00 0.00 3.02
1546 2925 1.544246 ACCAAATTAACCGCCTCTTGC 59.456 47.619 0.00 0.00 0.00 4.01
1763 3142 6.687081 ATTGAATTGGCCAATTTTGCATAG 57.313 33.333 37.54 0.00 40.77 2.23
2103 3482 4.876107 GTGTTCATATGGGAAACGTGATCT 59.124 41.667 2.13 0.00 0.00 2.75
2425 3807 3.447229 GCAGCAACAGTTTATACCCCATT 59.553 43.478 0.00 0.00 0.00 3.16
2431 3813 6.406400 GCAACAGTTTATACCCCATTATTGCA 60.406 38.462 0.00 0.00 37.92 4.08
2432 3814 7.551585 CAACAGTTTATACCCCATTATTGCAA 58.448 34.615 0.00 0.00 0.00 4.08
2433 3815 7.912778 ACAGTTTATACCCCATTATTGCAAT 57.087 32.000 17.56 17.56 0.00 3.56
2434 3816 8.317776 ACAGTTTATACCCCATTATTGCAATT 57.682 30.769 18.75 0.00 0.00 2.32
2435 3817 8.203485 ACAGTTTATACCCCATTATTGCAATTG 58.797 33.333 18.75 10.69 0.00 2.32
2436 3818 7.171337 CAGTTTATACCCCATTATTGCAATTGC 59.829 37.037 23.69 23.69 42.50 3.56
2437 3819 4.622260 ATACCCCATTATTGCAATTGCC 57.378 40.909 26.94 10.18 41.18 4.52
2438 3820 2.480390 ACCCCATTATTGCAATTGCCT 58.520 42.857 26.94 16.63 41.18 4.75
2439 3821 2.171027 ACCCCATTATTGCAATTGCCTG 59.829 45.455 26.94 15.32 41.18 4.85
2440 3822 2.435069 CCCCATTATTGCAATTGCCTGA 59.565 45.455 26.94 13.64 41.18 3.86
2441 3823 3.071892 CCCCATTATTGCAATTGCCTGAT 59.928 43.478 26.94 19.11 41.18 2.90
2442 3824 4.283978 CCCCATTATTGCAATTGCCTGATA 59.716 41.667 26.94 18.18 41.18 2.15
2443 3825 5.046159 CCCCATTATTGCAATTGCCTGATAT 60.046 40.000 26.94 14.20 41.18 1.63
2444 3826 6.469410 CCCATTATTGCAATTGCCTGATATT 58.531 36.000 26.94 14.75 41.18 1.28
2445 3827 6.592607 CCCATTATTGCAATTGCCTGATATTC 59.407 38.462 26.94 0.00 41.18 1.75
2446 3828 7.156000 CCATTATTGCAATTGCCTGATATTCA 58.844 34.615 26.94 8.83 41.18 2.57
2447 3829 7.117236 CCATTATTGCAATTGCCTGATATTCAC 59.883 37.037 26.94 0.00 41.18 3.18
2448 3830 4.389890 TTGCAATTGCCTGATATTCACC 57.610 40.909 26.94 0.00 41.18 4.02
2449 3831 2.358582 TGCAATTGCCTGATATTCACCG 59.641 45.455 26.94 0.00 41.18 4.94
2450 3832 2.358898 GCAATTGCCTGATATTCACCGT 59.641 45.455 20.06 0.00 34.31 4.83
2451 3833 3.548818 GCAATTGCCTGATATTCACCGTC 60.549 47.826 20.06 0.00 34.31 4.79
2452 3834 3.558931 ATTGCCTGATATTCACCGTCA 57.441 42.857 0.00 0.00 0.00 4.35
2453 3835 3.342377 TTGCCTGATATTCACCGTCAA 57.658 42.857 0.00 0.00 0.00 3.18
2454 3836 3.342377 TGCCTGATATTCACCGTCAAA 57.658 42.857 0.00 0.00 0.00 2.69
2455 3837 3.680490 TGCCTGATATTCACCGTCAAAA 58.320 40.909 0.00 0.00 0.00 2.44
2456 3838 3.438781 TGCCTGATATTCACCGTCAAAAC 59.561 43.478 0.00 0.00 0.00 2.43
2457 3839 3.438781 GCCTGATATTCACCGTCAAAACA 59.561 43.478 0.00 0.00 0.00 2.83
2458 3840 4.083003 GCCTGATATTCACCGTCAAAACAA 60.083 41.667 0.00 0.00 0.00 2.83
2484 3866 4.780815 TGCCTGATATTTGTAGTTGGAGG 58.219 43.478 0.00 0.00 0.00 4.30
2486 3868 4.576463 GCCTGATATTTGTAGTTGGAGGTG 59.424 45.833 0.00 0.00 0.00 4.00
2503 5048 4.399303 GGAGGTGAACCCAAATCTACATTG 59.601 45.833 0.00 0.00 36.42 2.82
2546 5096 6.703607 GTCACTTTGGATATCGATGATTGTCT 59.296 38.462 8.54 0.00 0.00 3.41
2566 5116 5.248248 TGTCTACCCACTTCATCATCTTTCA 59.752 40.000 0.00 0.00 0.00 2.69
2580 5130 3.631145 TCTTTCAGTGTTGCTTCATGC 57.369 42.857 0.00 0.00 43.25 4.06
2587 5137 1.225854 GTTGCTTCATGCGACGAGC 60.226 57.895 0.00 0.00 45.05 5.03
2614 5164 1.537202 CTTCCTTGGTGCTAGTGTTGC 59.463 52.381 0.00 0.00 0.00 4.17
2620 5170 2.531771 TGGTGCTAGTGTTGCTAGGTA 58.468 47.619 3.82 0.00 45.61 3.08
2663 5213 7.557724 TCCTCGGTGTTTTATAATGTGTGATA 58.442 34.615 0.00 0.00 0.00 2.15
2757 5308 6.177610 GGTTTCTATAGTTCCCATCAACACA 58.822 40.000 0.00 0.00 0.00 3.72
2842 5395 5.817296 GCAAACCTCTTGTTTCCAAAAAGAT 59.183 36.000 0.00 0.00 45.35 2.40
2870 5423 3.454812 GTCATATACAGTCAACCACCCCT 59.545 47.826 0.00 0.00 0.00 4.79
2871 5424 4.652421 GTCATATACAGTCAACCACCCCTA 59.348 45.833 0.00 0.00 0.00 3.53
2872 5425 4.652421 TCATATACAGTCAACCACCCCTAC 59.348 45.833 0.00 0.00 0.00 3.18
2873 5426 2.402182 TACAGTCAACCACCCCTACA 57.598 50.000 0.00 0.00 0.00 2.74
2875 5428 1.420138 ACAGTCAACCACCCCTACAAG 59.580 52.381 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.396623 TGGGAACTTGTAGGTTTAACTCAAAAA 59.603 33.333 0.00 0.00 0.00 1.94
49 50 6.890814 TGGGAACTTGTAGGTTTAACTCAAAA 59.109 34.615 0.00 0.00 0.00 2.44
50 51 6.319405 GTGGGAACTTGTAGGTTTAACTCAAA 59.681 38.462 0.00 0.00 0.00 2.69
51 52 5.824097 GTGGGAACTTGTAGGTTTAACTCAA 59.176 40.000 0.00 0.00 0.00 3.02
52 53 5.370679 GTGGGAACTTGTAGGTTTAACTCA 58.629 41.667 0.00 0.00 0.00 3.41
53 54 4.758674 GGTGGGAACTTGTAGGTTTAACTC 59.241 45.833 0.00 0.00 0.00 3.01
54 55 4.414514 AGGTGGGAACTTGTAGGTTTAACT 59.585 41.667 0.00 0.00 0.00 2.24
55 56 4.722220 AGGTGGGAACTTGTAGGTTTAAC 58.278 43.478 0.00 0.00 0.00 2.01
56 57 5.513614 GCTAGGTGGGAACTTGTAGGTTTAA 60.514 44.000 0.00 0.00 0.00 1.52
57 58 4.019950 GCTAGGTGGGAACTTGTAGGTTTA 60.020 45.833 0.00 0.00 0.00 2.01
58 59 3.244805 GCTAGGTGGGAACTTGTAGGTTT 60.245 47.826 0.00 0.00 0.00 3.27
59 60 2.305052 GCTAGGTGGGAACTTGTAGGTT 59.695 50.000 0.00 0.00 0.00 3.50
60 61 1.907255 GCTAGGTGGGAACTTGTAGGT 59.093 52.381 0.00 0.00 0.00 3.08
61 62 2.188817 AGCTAGGTGGGAACTTGTAGG 58.811 52.381 0.00 0.00 0.00 3.18
62 63 3.260884 TGAAGCTAGGTGGGAACTTGTAG 59.739 47.826 0.00 0.00 0.00 2.74
63 64 3.244582 TGAAGCTAGGTGGGAACTTGTA 58.755 45.455 0.00 0.00 0.00 2.41
64 65 2.054799 TGAAGCTAGGTGGGAACTTGT 58.945 47.619 0.00 0.00 0.00 3.16
65 66 2.859165 TGAAGCTAGGTGGGAACTTG 57.141 50.000 0.00 0.00 0.00 3.16
66 67 2.093447 CGATGAAGCTAGGTGGGAACTT 60.093 50.000 0.00 0.00 0.00 2.66
67 68 1.482593 CGATGAAGCTAGGTGGGAACT 59.517 52.381 0.00 0.00 0.00 3.01
68 69 1.207329 ACGATGAAGCTAGGTGGGAAC 59.793 52.381 0.00 0.00 0.00 3.62
69 70 1.207089 CACGATGAAGCTAGGTGGGAA 59.793 52.381 0.00 0.00 0.00 3.97
70 71 0.824109 CACGATGAAGCTAGGTGGGA 59.176 55.000 0.00 0.00 0.00 4.37
71 72 0.179073 CCACGATGAAGCTAGGTGGG 60.179 60.000 11.59 0.00 43.39 4.61
72 73 3.369381 CCACGATGAAGCTAGGTGG 57.631 57.895 0.00 7.04 41.81 4.61
73 74 0.176680 AGCCACGATGAAGCTAGGTG 59.823 55.000 0.00 0.00 34.38 4.00
74 75 1.409427 GTAGCCACGATGAAGCTAGGT 59.591 52.381 0.00 0.00 39.66 3.08
119 120 3.855950 ACTACTAGTTGTTATTGCGACGC 59.144 43.478 14.19 14.19 0.00 5.19
201 202 3.211963 GGGCTGGCCTAATGCGTG 61.212 66.667 13.80 0.00 42.61 5.34
231 232 8.197439 TGATGTCATCATAGTTGTATCTCGTTT 58.803 33.333 11.62 0.00 33.59 3.60
237 238 7.150640 TCAGCTGATGTCATCATAGTTGTATC 58.849 38.462 13.74 0.00 38.85 2.24
238 239 7.015001 TCTCAGCTGATGTCATCATAGTTGTAT 59.985 37.037 18.63 0.00 38.85 2.29
243 244 5.539193 TCATCTCAGCTGATGTCATCATAGT 59.461 40.000 18.63 1.38 43.03 2.12
247 248 4.748277 TTCATCTCAGCTGATGTCATCA 57.252 40.909 18.63 14.76 43.03 3.07
250 251 6.475596 TCTAATTCATCTCAGCTGATGTCA 57.524 37.500 18.63 5.72 43.03 3.58
264 265 9.926158 CTGAGACATAACTATGCTCTAATTCAT 57.074 33.333 15.72 0.00 37.54 2.57
313 1406 0.179111 GCGCATAGTACAGACTGCCA 60.179 55.000 0.30 0.00 36.28 4.92
341 1434 6.128007 CCTCAAATAATTAGTGCCAACGAGTT 60.128 38.462 0.00 0.00 0.00 3.01
342 1435 5.354234 CCTCAAATAATTAGTGCCAACGAGT 59.646 40.000 0.00 0.00 0.00 4.18
373 1466 6.907961 TCCTACTCCTATAGCAGTCTAAACA 58.092 40.000 0.00 0.00 0.00 2.83
436 1792 3.149196 ACCTCATCGACAACAGCAATTT 58.851 40.909 0.00 0.00 0.00 1.82
446 1802 1.177401 CCTGTCTGACCTCATCGACA 58.823 55.000 5.17 0.00 38.03 4.35
447 1803 0.179124 GCCTGTCTGACCTCATCGAC 60.179 60.000 5.17 0.00 33.86 4.20
463 1819 1.501582 CAGCTCCCCTACTAAAGCCT 58.498 55.000 0.00 0.00 35.32 4.58
496 1853 7.015195 TCGAATGATCACTATCCCATTAGAACA 59.985 37.037 0.00 0.00 31.23 3.18
502 1859 6.364568 TCATCGAATGATCACTATCCCATT 57.635 37.500 0.00 0.00 33.59 3.16
520 1877 9.949174 CTCCATCTGTAGATTAATAGATCATCG 57.051 37.037 0.00 0.00 31.21 3.84
583 1940 2.790433 TGGCCTCATACAAAAGTCCAC 58.210 47.619 3.32 0.00 0.00 4.02
690 2051 1.463674 GGGACAATGCAAGGTCGATT 58.536 50.000 13.07 0.00 34.87 3.34
717 2079 1.354368 TGAGTGGGGACTGGGAATTTC 59.646 52.381 0.00 0.00 0.00 2.17
927 2298 1.129809 CGTTTCGCTGGTGCTAACG 59.870 57.895 9.48 9.48 43.03 3.18
1105 2476 2.683933 GAGGCGGAGAGGGTGGAA 60.684 66.667 0.00 0.00 0.00 3.53
1113 2484 3.706373 GCACCTTGGAGGCGGAGA 61.706 66.667 0.00 0.00 39.63 3.71
1171 2545 3.502211 TCGTCAGAGCCAAAAGAATTTCC 59.498 43.478 0.00 0.00 37.28 3.13
1173 2547 4.137543 AGTCGTCAGAGCCAAAAGAATTT 58.862 39.130 0.00 0.00 42.41 1.82
1195 2569 2.102438 CATCTGCAAGCTCGGCGAA 61.102 57.895 12.13 0.00 0.00 4.70
1311 2685 0.391130 TTTACGCAGGCAGGTAGCTG 60.391 55.000 17.67 17.67 44.79 4.24
1553 2932 0.618458 AGCTTGGGGATTAACTGCGA 59.382 50.000 0.00 0.00 0.00 5.10
1676 3055 2.054232 TGAAGAGGAGGTAGCGGTAG 57.946 55.000 0.00 0.00 0.00 3.18
1723 3102 4.566545 TCAATTCAAACGCACACAAGAT 57.433 36.364 0.00 0.00 0.00 2.40
1733 3112 5.610235 AATTGGCCAATTCAATTCAAACG 57.390 34.783 33.50 0.00 39.73 3.60
2395 3777 7.312899 GGTATAAACTGTTGCTGCTAAATGTT 58.687 34.615 0.00 0.00 0.00 2.71
2425 3807 5.278414 CGGTGAATATCAGGCAATTGCAATA 60.278 40.000 30.32 22.50 44.36 1.90
2431 3813 3.884895 TGACGGTGAATATCAGGCAATT 58.115 40.909 0.00 0.00 0.00 2.32
2432 3814 3.558931 TGACGGTGAATATCAGGCAAT 57.441 42.857 0.00 0.00 0.00 3.56
2433 3815 3.342377 TTGACGGTGAATATCAGGCAA 57.658 42.857 0.00 0.00 0.00 4.52
2434 3816 3.342377 TTTGACGGTGAATATCAGGCA 57.658 42.857 0.00 0.00 0.00 4.75
2435 3817 3.438781 TGTTTTGACGGTGAATATCAGGC 59.561 43.478 0.00 0.00 0.00 4.85
2436 3818 5.621197 TTGTTTTGACGGTGAATATCAGG 57.379 39.130 0.00 0.00 0.00 3.86
2437 3819 8.427012 CAATTTTGTTTTGACGGTGAATATCAG 58.573 33.333 0.00 0.00 0.00 2.90
2438 3820 7.095857 GCAATTTTGTTTTGACGGTGAATATCA 60.096 33.333 0.00 0.00 0.00 2.15
2439 3821 7.226772 GCAATTTTGTTTTGACGGTGAATATC 58.773 34.615 0.00 0.00 0.00 1.63
2440 3822 6.147000 GGCAATTTTGTTTTGACGGTGAATAT 59.853 34.615 0.00 0.00 0.00 1.28
2441 3823 5.463724 GGCAATTTTGTTTTGACGGTGAATA 59.536 36.000 0.00 0.00 0.00 1.75
2442 3824 4.272261 GGCAATTTTGTTTTGACGGTGAAT 59.728 37.500 0.00 0.00 0.00 2.57
2443 3825 3.619038 GGCAATTTTGTTTTGACGGTGAA 59.381 39.130 0.00 0.00 0.00 3.18
2444 3826 3.118956 AGGCAATTTTGTTTTGACGGTGA 60.119 39.130 0.00 0.00 37.18 4.02
2445 3827 3.001127 CAGGCAATTTTGTTTTGACGGTG 59.999 43.478 0.00 0.00 37.18 4.94
2446 3828 3.118956 TCAGGCAATTTTGTTTTGACGGT 60.119 39.130 0.00 0.00 37.18 4.83
2447 3829 3.452474 TCAGGCAATTTTGTTTTGACGG 58.548 40.909 0.00 0.00 37.18 4.79
2448 3830 6.949578 ATATCAGGCAATTTTGTTTTGACG 57.050 33.333 0.00 0.00 37.18 4.35
2449 3831 8.558700 ACAAATATCAGGCAATTTTGTTTTGAC 58.441 29.630 0.00 0.00 37.24 3.18
2450 3832 8.674263 ACAAATATCAGGCAATTTTGTTTTGA 57.326 26.923 0.00 0.00 37.24 2.69
2452 3834 9.777297 ACTACAAATATCAGGCAATTTTGTTTT 57.223 25.926 4.87 0.00 40.11 2.43
2453 3835 9.777297 AACTACAAATATCAGGCAATTTTGTTT 57.223 25.926 4.87 0.00 40.11 2.83
2454 3836 9.206870 CAACTACAAATATCAGGCAATTTTGTT 57.793 29.630 4.87 0.00 40.11 2.83
2455 3837 7.818930 CCAACTACAAATATCAGGCAATTTTGT 59.181 33.333 0.00 0.00 41.76 2.83
2456 3838 8.034215 TCCAACTACAAATATCAGGCAATTTTG 58.966 33.333 0.00 0.00 34.34 2.44
2457 3839 8.133024 TCCAACTACAAATATCAGGCAATTTT 57.867 30.769 0.00 0.00 0.00 1.82
2458 3840 7.147846 CCTCCAACTACAAATATCAGGCAATTT 60.148 37.037 0.00 0.00 0.00 1.82
2484 3866 8.137437 CCATATTCAATGTAGATTTGGGTTCAC 58.863 37.037 0.00 0.00 0.00 3.18
2486 3868 8.463930 TCCATATTCAATGTAGATTTGGGTTC 57.536 34.615 1.61 0.00 0.00 3.62
2517 5067 8.654215 CAATCATCGATATCCAAAGTGACTATG 58.346 37.037 0.00 0.00 0.00 2.23
2518 5068 8.370940 ACAATCATCGATATCCAAAGTGACTAT 58.629 33.333 0.00 0.00 0.00 2.12
2546 5096 5.013079 ACACTGAAAGATGATGAAGTGGGTA 59.987 40.000 5.69 0.00 39.42 3.69
2566 5116 0.599991 TCGTCGCATGAAGCAACACT 60.600 50.000 0.00 0.00 46.13 3.55
2587 5137 0.957395 AGCACCAAGGAAGCGTCATG 60.957 55.000 1.14 0.00 0.00 3.07
2614 5164 5.764192 AGTCGGTGAGCTTAATAGTACCTAG 59.236 44.000 0.00 0.00 0.00 3.02
2620 5170 3.633065 GAGGAGTCGGTGAGCTTAATAGT 59.367 47.826 0.00 0.00 0.00 2.12
2663 5213 5.611374 CCTATAAAAGGGATGACGACACAT 58.389 41.667 0.00 0.00 42.32 3.21
2733 5284 6.093633 GTGTGTTGATGGGAACTATAGAAACC 59.906 42.308 6.78 5.65 0.00 3.27
2734 5285 6.653320 TGTGTGTTGATGGGAACTATAGAAAC 59.347 38.462 6.78 0.00 0.00 2.78
2842 5395 6.653320 GGTGGTTGACTGTATATGACTTTTGA 59.347 38.462 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.