Multiple sequence alignment - TraesCS7A01G206000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G206000 chr7A 100.000 3482 0 0 1 3482 167988337 167984856 0.000000e+00 6431.0
1 TraesCS7A01G206000 chr7A 92.925 523 36 1 2960 3482 661974687 661975208 0.000000e+00 760.0
2 TraesCS7A01G206000 chr7A 95.652 230 10 0 492 721 5906674 5906445 1.530000e-98 370.0
3 TraesCS7A01G206000 chr7A 94.043 235 12 2 488 721 252742471 252742704 4.270000e-94 355.0
4 TraesCS7A01G206000 chr7A 89.085 284 14 3 2496 2779 661974055 661974321 1.550000e-88 337.0
5 TraesCS7A01G206000 chr7A 88.983 118 8 2 159 276 668708620 668708508 1.300000e-29 141.0
6 TraesCS7A01G206000 chr7A 92.632 95 7 0 2808 2902 661974591 661974685 1.690000e-28 137.0
7 TraesCS7A01G206000 chr7B 94.918 1712 79 7 742 2447 130898625 130896916 0.000000e+00 2673.0
8 TraesCS7A01G206000 chr7B 90.299 268 12 5 3 269 602072108 602071854 4.300000e-89 339.0
9 TraesCS7A01G206000 chr7B 82.500 360 45 9 2445 2800 641152427 641152772 2.030000e-77 300.0
10 TraesCS7A01G206000 chr7B 87.705 244 20 3 3045 3288 641153150 641153383 3.420000e-70 276.0
11 TraesCS7A01G206000 chr7B 85.271 258 14 9 2808 3042 641152849 641153105 9.650000e-61 244.0
12 TraesCS7A01G206000 chr7B 92.523 107 6 1 3374 3478 641153400 641153506 6.020000e-33 152.0
13 TraesCS7A01G206000 chr7B 79.878 164 28 4 2475 2636 647152657 647152817 7.900000e-22 115.0
14 TraesCS7A01G206000 chr7D 96.972 1585 44 3 742 2324 166928280 166926698 0.000000e+00 2658.0
15 TraesCS7A01G206000 chr7D 98.207 1171 21 0 1277 2447 166887100 166885930 0.000000e+00 2047.0
16 TraesCS7A01G206000 chr7D 84.342 1437 210 11 1009 2442 167058350 167056926 0.000000e+00 1393.0
17 TraesCS7A01G206000 chr7D 90.574 244 23 0 3045 3288 519685737 519685494 1.210000e-84 324.0
18 TraesCS7A01G206000 chr7D 82.121 330 39 10 2475 2800 519686419 519686106 7.410000e-67 265.0
19 TraesCS7A01G206000 chr7D 89.109 202 20 2 293 493 166928479 166928279 2.080000e-62 250.0
20 TraesCS7A01G206000 chr7D 88.614 202 21 2 293 493 166888289 166888089 9.650000e-61 244.0
21 TraesCS7A01G206000 chr7D 92.500 160 12 0 2808 2967 519686029 519685870 2.700000e-56 230.0
22 TraesCS7A01G206000 chr7D 92.453 106 6 1 3375 3478 519685476 519685371 2.160000e-32 150.0
23 TraesCS7A01G206000 chr1A 82.060 1689 270 27 760 2436 22534448 22536115 0.000000e+00 1410.0
24 TraesCS7A01G206000 chr1A 84.247 1441 210 15 1009 2442 20919528 20918098 0.000000e+00 1387.0
25 TraesCS7A01G206000 chr1A 98.141 269 4 1 1 269 575508908 575509175 5.260000e-128 468.0
26 TraesCS7A01G206000 chr1A 85.425 247 22 5 2555 2794 27278642 27278881 9.650000e-61 244.0
27 TraesCS7A01G206000 chr1D 81.786 1702 273 32 760 2445 20827914 20826234 0.000000e+00 1391.0
28 TraesCS7A01G206000 chr1B 81.743 1698 276 25 760 2445 34168533 34166858 0.000000e+00 1387.0
29 TraesCS7A01G206000 chr1B 82.279 1439 242 10 1009 2442 28163244 28161814 0.000000e+00 1232.0
30 TraesCS7A01G206000 chr1B 94.397 232 13 0 490 721 212061541 212061772 1.190000e-94 357.0
31 TraesCS7A01G206000 chr2A 92.543 523 37 2 2960 3482 137122331 137121811 0.000000e+00 749.0
32 TraesCS7A01G206000 chr2A 87.571 354 28 3 2448 2801 137122837 137122500 2.520000e-106 396.0
33 TraesCS7A01G206000 chr2A 82.051 351 55 5 2445 2789 39253575 39253923 3.400000e-75 292.0
34 TraesCS7A01G206000 chr2A 92.857 98 7 0 2808 2905 137122427 137122330 3.620000e-30 143.0
35 TraesCS7A01G206000 chr6A 94.783 230 12 0 492 721 76520678 76520907 3.300000e-95 359.0
36 TraesCS7A01G206000 chr6A 90.672 268 11 5 3 269 141368022 141367768 9.250000e-91 344.0
37 TraesCS7A01G206000 chr6A 93.085 188 13 0 3045 3232 445285194 445285007 3.420000e-70 276.0
38 TraesCS7A01G206000 chr6A 87.437 199 19 5 2601 2796 616239002 616239197 1.260000e-54 224.0
39 TraesCS7A01G206000 chr6A 91.772 158 9 3 3316 3470 445285008 445284852 2.100000e-52 217.0
40 TraesCS7A01G206000 chr6A 90.625 160 15 0 2808 2967 445285495 445285336 2.720000e-51 213.0
41 TraesCS7A01G206000 chr6A 90.647 139 10 2 2662 2799 445285714 445285578 7.680000e-42 182.0
42 TraesCS7A01G206000 chr6A 82.209 163 26 1 2448 2610 445285869 445285710 1.690000e-28 137.0
43 TraesCS7A01G206000 chr4D 94.805 231 11 1 491 721 349816319 349816090 3.300000e-95 359.0
44 TraesCS7A01G206000 chr4A 94.805 231 11 1 491 721 396169583 396169354 3.300000e-95 359.0
45 TraesCS7A01G206000 chr4A 94.783 230 12 0 492 721 726410459 726410230 3.300000e-95 359.0
46 TraesCS7A01G206000 chr3D 94.783 230 12 0 492 721 83428796 83428567 3.300000e-95 359.0
47 TraesCS7A01G206000 chr3D 92.713 247 16 2 477 721 586579212 586578966 4.270000e-94 355.0
48 TraesCS7A01G206000 chr6B 91.011 267 15 2 3 269 560697063 560697320 5.530000e-93 351.0
49 TraesCS7A01G206000 chr3B 90.574 244 23 0 3045 3288 17496285 17496042 1.210000e-84 324.0
50 TraesCS7A01G206000 chr3B 91.875 160 13 0 2808 2967 17496586 17496427 1.260000e-54 224.0
51 TraesCS7A01G206000 chr3B 92.373 118 6 3 150 267 754222200 754222086 7.730000e-37 165.0
52 TraesCS7A01G206000 chr3B 91.200 125 6 4 143 267 754286874 754286993 7.730000e-37 165.0
53 TraesCS7A01G206000 chr3B 90.909 110 7 2 3371 3478 17496027 17495919 1.010000e-30 145.0
54 TraesCS7A01G206000 chr3B 97.619 42 1 0 3 44 754222270 754222229 4.820000e-09 73.1
55 TraesCS7A01G206000 chr3B 97.619 42 1 0 3 44 754286809 754286850 4.820000e-09 73.1
56 TraesCS7A01G206000 chr5B 82.471 348 52 5 2448 2789 275684108 275683764 2.630000e-76 296.0
57 TraesCS7A01G206000 chr5B 84.337 249 28 7 3045 3290 678850907 678850667 2.090000e-57 233.0
58 TraesCS7A01G206000 chr5B 88.068 176 19 1 3045 3218 16401311 16401136 1.270000e-49 207.0
59 TraesCS7A01G206000 chr3A 82.203 354 50 5 2448 2794 709440633 709440286 3.400000e-75 292.0
60 TraesCS7A01G206000 chr3A 81.586 353 53 4 2445 2791 552419445 552419791 7.360000e-72 281.0
61 TraesCS7A01G206000 chr3A 79.004 281 29 16 3 269 686841752 686841488 7.730000e-37 165.0
62 TraesCS7A01G206000 chr3A 89.091 110 8 2 159 268 432400328 432400433 2.180000e-27 134.0
63 TraesCS7A01G206000 chr3A 95.455 44 2 0 3 46 432400157 432400200 1.730000e-08 71.3
64 TraesCS7A01G206000 chr2D 82.779 331 49 3 2448 2772 44525035 44524707 4.400000e-74 289.0
65 TraesCS7A01G206000 chr2D 82.779 331 49 3 2448 2772 44534369 44534041 4.400000e-74 289.0
66 TraesCS7A01G206000 chr2D 86.475 244 21 7 3045 3288 599001678 599001447 1.240000e-64 257.0
67 TraesCS7A01G206000 chr2D 84.766 256 15 9 2810 3042 599001977 599001723 5.810000e-58 235.0
68 TraesCS7A01G206000 chr2D 92.523 107 6 1 3374 3478 599001430 599001324 6.020000e-33 152.0
69 TraesCS7A01G206000 chr5D 84.211 266 17 12 4 269 365130875 365130635 5.810000e-58 235.0
70 TraesCS7A01G206000 chr5D 97.727 44 1 0 3 46 558025270 558025313 3.730000e-10 76.8
71 TraesCS7A01G206000 chrUn 86.124 209 22 2 2570 2772 409764860 409764653 5.850000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G206000 chr7A 167984856 167988337 3481 True 6431.000000 6431 100.000000 1 3482 1 chr7A.!!$R2 3481
1 TraesCS7A01G206000 chr7A 661974055 661975208 1153 False 411.333333 760 91.547333 2496 3482 3 chr7A.!!$F2 986
2 TraesCS7A01G206000 chr7B 130896916 130898625 1709 True 2673.000000 2673 94.918000 742 2447 1 chr7B.!!$R1 1705
3 TraesCS7A01G206000 chr7B 641152427 641153506 1079 False 243.000000 300 86.999750 2445 3478 4 chr7B.!!$F2 1033
4 TraesCS7A01G206000 chr7D 166926698 166928479 1781 True 1454.000000 2658 93.040500 293 2324 2 chr7D.!!$R3 2031
5 TraesCS7A01G206000 chr7D 167056926 167058350 1424 True 1393.000000 1393 84.342000 1009 2442 1 chr7D.!!$R1 1433
6 TraesCS7A01G206000 chr7D 166885930 166888289 2359 True 1145.500000 2047 93.410500 293 2447 2 chr7D.!!$R2 2154
7 TraesCS7A01G206000 chr7D 519685371 519686419 1048 True 242.250000 324 89.412000 2475 3478 4 chr7D.!!$R4 1003
8 TraesCS7A01G206000 chr1A 22534448 22536115 1667 False 1410.000000 1410 82.060000 760 2436 1 chr1A.!!$F1 1676
9 TraesCS7A01G206000 chr1A 20918098 20919528 1430 True 1387.000000 1387 84.247000 1009 2442 1 chr1A.!!$R1 1433
10 TraesCS7A01G206000 chr1D 20826234 20827914 1680 True 1391.000000 1391 81.786000 760 2445 1 chr1D.!!$R1 1685
11 TraesCS7A01G206000 chr1B 34166858 34168533 1675 True 1387.000000 1387 81.743000 760 2445 1 chr1B.!!$R2 1685
12 TraesCS7A01G206000 chr1B 28161814 28163244 1430 True 1232.000000 1232 82.279000 1009 2442 1 chr1B.!!$R1 1433
13 TraesCS7A01G206000 chr2A 137121811 137122837 1026 True 429.333333 749 90.990333 2448 3482 3 chr2A.!!$R1 1034
14 TraesCS7A01G206000 chr6A 445284852 445285869 1017 True 205.000000 276 89.667600 2448 3470 5 chr6A.!!$R2 1022
15 TraesCS7A01G206000 chr3B 17495919 17496586 667 True 231.000000 324 91.119333 2808 3478 3 chr3B.!!$R1 670
16 TraesCS7A01G206000 chr2D 599001324 599001977 653 True 214.666667 257 87.921333 2810 3478 3 chr2D.!!$R3 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.030399 GCTAGGTTAGGGGAAGGGGA 60.030 60.0 0.00 0.00 0.0 4.81 F
56 57 0.106669 GGAAGGGGAAAGGGGATTCG 60.107 60.0 0.00 0.00 0.0 3.34 F
140 141 0.249405 ATTGCGTTGCTGTGTTTGGG 60.249 50.0 0.00 0.00 0.0 4.12 F
930 937 0.452122 CTGCGCTTTAAAACGACCCG 60.452 55.0 14.82 0.51 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1006 1014 1.852157 TTGGGATGGAGTGGTGAGCC 61.852 60.000 0.00 0.00 0.0 4.70 R
1941 2448 2.236395 CAGGTTTATTCCCGTCTGTCCT 59.764 50.000 0.00 0.00 0.0 3.85 R
2115 2622 1.745489 GAAGGCCGTGCGGAAATCT 60.745 57.895 15.45 2.96 37.5 2.40 R
2801 3315 0.517316 GCGCACTCCTAGGTTTGTTG 59.483 55.000 9.08 5.71 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.338257 GCCTCAGCTAGCGCTAGG 59.662 66.667 37.97 28.15 46.99 3.02
32 33 2.494530 GCCTCAGCTAGCGCTAGGT 61.495 63.158 36.64 36.64 46.99 3.08
33 34 2.022240 GCCTCAGCTAGCGCTAGGTT 62.022 60.000 38.89 19.12 46.99 3.50
34 35 1.319541 CCTCAGCTAGCGCTAGGTTA 58.680 55.000 38.89 31.44 46.99 2.85
35 36 1.268352 CCTCAGCTAGCGCTAGGTTAG 59.732 57.143 38.89 36.65 46.99 2.34
36 37 1.268352 CTCAGCTAGCGCTAGGTTAGG 59.732 57.143 38.89 29.09 46.99 2.69
37 38 0.315568 CAGCTAGCGCTAGGTTAGGG 59.684 60.000 38.89 26.42 46.99 3.53
38 39 0.828343 AGCTAGCGCTAGGTTAGGGG 60.828 60.000 36.64 16.20 46.79 4.79
39 40 0.826672 GCTAGCGCTAGGTTAGGGGA 60.827 60.000 37.97 7.78 38.97 4.81
40 41 1.700955 CTAGCGCTAGGTTAGGGGAA 58.299 55.000 32.51 2.03 38.97 3.97
41 42 1.614413 CTAGCGCTAGGTTAGGGGAAG 59.386 57.143 32.51 8.74 38.97 3.46
42 43 1.049289 AGCGCTAGGTTAGGGGAAGG 61.049 60.000 8.99 0.00 38.97 3.46
43 44 2.041206 GCGCTAGGTTAGGGGAAGGG 62.041 65.000 0.00 0.00 38.97 3.95
44 45 1.408453 CGCTAGGTTAGGGGAAGGGG 61.408 65.000 0.00 0.00 35.33 4.79
45 46 0.030399 GCTAGGTTAGGGGAAGGGGA 60.030 60.000 0.00 0.00 0.00 4.81
46 47 1.627195 GCTAGGTTAGGGGAAGGGGAA 60.627 57.143 0.00 0.00 0.00 3.97
47 48 2.854731 CTAGGTTAGGGGAAGGGGAAA 58.145 52.381 0.00 0.00 0.00 3.13
48 49 1.682478 AGGTTAGGGGAAGGGGAAAG 58.318 55.000 0.00 0.00 0.00 2.62
49 50 0.629596 GGTTAGGGGAAGGGGAAAGG 59.370 60.000 0.00 0.00 0.00 3.11
50 51 0.629596 GTTAGGGGAAGGGGAAAGGG 59.370 60.000 0.00 0.00 0.00 3.95
51 52 0.554112 TTAGGGGAAGGGGAAAGGGG 60.554 60.000 0.00 0.00 0.00 4.79
52 53 1.474864 TAGGGGAAGGGGAAAGGGGA 61.475 60.000 0.00 0.00 0.00 4.81
53 54 1.625879 GGGGAAGGGGAAAGGGGAT 60.626 63.158 0.00 0.00 0.00 3.85
54 55 1.228920 GGGGAAGGGGAAAGGGGATT 61.229 60.000 0.00 0.00 0.00 3.01
55 56 0.261991 GGGAAGGGGAAAGGGGATTC 59.738 60.000 0.00 0.00 0.00 2.52
56 57 0.106669 GGAAGGGGAAAGGGGATTCG 60.107 60.000 0.00 0.00 0.00 3.34
57 58 0.916809 GAAGGGGAAAGGGGATTCGA 59.083 55.000 0.00 0.00 0.00 3.71
58 59 1.495148 GAAGGGGAAAGGGGATTCGAT 59.505 52.381 0.00 0.00 0.00 3.59
59 60 1.608425 AGGGGAAAGGGGATTCGATT 58.392 50.000 0.00 0.00 0.00 3.34
60 61 1.930204 AGGGGAAAGGGGATTCGATTT 59.070 47.619 0.00 0.00 0.00 2.17
61 62 2.314852 AGGGGAAAGGGGATTCGATTTT 59.685 45.455 0.00 0.00 0.00 1.82
62 63 2.430694 GGGGAAAGGGGATTCGATTTTG 59.569 50.000 0.00 0.00 0.00 2.44
63 64 2.430694 GGGAAAGGGGATTCGATTTTGG 59.569 50.000 0.00 0.00 0.00 3.28
64 65 3.096852 GGAAAGGGGATTCGATTTTGGT 58.903 45.455 0.00 0.00 0.00 3.67
65 66 3.130516 GGAAAGGGGATTCGATTTTGGTC 59.869 47.826 0.00 0.00 0.00 4.02
66 67 3.739401 AAGGGGATTCGATTTTGGTCT 57.261 42.857 0.00 0.00 0.00 3.85
67 68 3.004752 AGGGGATTCGATTTTGGTCTG 57.995 47.619 0.00 0.00 0.00 3.51
68 69 1.405463 GGGGATTCGATTTTGGTCTGC 59.595 52.381 0.00 0.00 0.00 4.26
69 70 2.369394 GGGATTCGATTTTGGTCTGCT 58.631 47.619 0.00 0.00 0.00 4.24
70 71 3.541632 GGGATTCGATTTTGGTCTGCTA 58.458 45.455 0.00 0.00 0.00 3.49
71 72 3.312697 GGGATTCGATTTTGGTCTGCTAC 59.687 47.826 0.00 0.00 0.00 3.58
72 73 4.192317 GGATTCGATTTTGGTCTGCTACT 58.808 43.478 0.00 0.00 0.00 2.57
73 74 4.271291 GGATTCGATTTTGGTCTGCTACTC 59.729 45.833 0.00 0.00 0.00 2.59
74 75 3.953712 TCGATTTTGGTCTGCTACTCA 57.046 42.857 0.00 0.00 0.00 3.41
75 76 3.585862 TCGATTTTGGTCTGCTACTCAC 58.414 45.455 0.00 0.00 0.00 3.51
76 77 2.345641 CGATTTTGGTCTGCTACTCACG 59.654 50.000 0.00 0.00 0.00 4.35
77 78 1.508632 TTTTGGTCTGCTACTCACGC 58.491 50.000 0.00 0.00 0.00 5.34
78 79 0.666274 TTTGGTCTGCTACTCACGCG 60.666 55.000 3.53 3.53 0.00 6.01
79 80 2.881352 GGTCTGCTACTCACGCGC 60.881 66.667 5.73 0.00 0.00 6.86
80 81 3.241059 GTCTGCTACTCACGCGCG 61.241 66.667 30.96 30.96 0.00 6.86
81 82 3.428282 TCTGCTACTCACGCGCGA 61.428 61.111 39.36 14.99 0.00 5.87
82 83 2.946597 CTGCTACTCACGCGCGAG 60.947 66.667 39.36 30.24 39.05 5.03
83 84 3.382591 CTGCTACTCACGCGCGAGA 62.383 63.158 39.36 32.82 36.47 4.04
84 85 2.945066 GCTACTCACGCGCGAGAC 60.945 66.667 39.36 18.20 36.47 3.36
85 86 2.277373 CTACTCACGCGCGAGACC 60.277 66.667 39.36 0.00 36.47 3.85
86 87 3.035576 CTACTCACGCGCGAGACCA 62.036 63.158 39.36 20.03 36.47 4.02
87 88 2.904747 CTACTCACGCGCGAGACCAG 62.905 65.000 39.36 24.90 36.47 4.00
88 89 4.103103 CTCACGCGCGAGACCAGA 62.103 66.667 39.36 20.66 34.79 3.86
89 90 4.400109 TCACGCGCGAGACCAGAC 62.400 66.667 39.36 0.00 0.00 3.51
90 91 4.700365 CACGCGCGAGACCAGACA 62.700 66.667 39.36 0.00 0.00 3.41
91 92 4.702081 ACGCGCGAGACCAGACAC 62.702 66.667 39.36 0.00 0.00 3.67
94 95 4.778415 CGCGAGACCAGACACCCG 62.778 72.222 0.00 0.00 0.00 5.28
95 96 3.371063 GCGAGACCAGACACCCGA 61.371 66.667 0.00 0.00 0.00 5.14
96 97 2.711922 GCGAGACCAGACACCCGAT 61.712 63.158 0.00 0.00 0.00 4.18
97 98 1.433879 CGAGACCAGACACCCGATC 59.566 63.158 0.00 0.00 0.00 3.69
98 99 1.433879 GAGACCAGACACCCGATCG 59.566 63.158 8.51 8.51 0.00 3.69
99 100 2.202756 GACCAGACACCCGATCGC 60.203 66.667 10.32 0.00 0.00 4.58
100 101 2.680352 ACCAGACACCCGATCGCT 60.680 61.111 10.32 0.00 0.00 4.93
101 102 2.105128 CCAGACACCCGATCGCTC 59.895 66.667 10.32 0.94 0.00 5.03
102 103 2.710902 CCAGACACCCGATCGCTCA 61.711 63.158 10.32 0.00 0.00 4.26
103 104 1.439228 CAGACACCCGATCGCTCAT 59.561 57.895 10.32 0.00 0.00 2.90
104 105 0.873312 CAGACACCCGATCGCTCATG 60.873 60.000 10.32 7.07 0.00 3.07
105 106 1.141881 GACACCCGATCGCTCATGT 59.858 57.895 10.32 10.33 0.00 3.21
106 107 0.872021 GACACCCGATCGCTCATGTC 60.872 60.000 10.32 15.07 0.00 3.06
107 108 1.323271 ACACCCGATCGCTCATGTCT 61.323 55.000 10.32 0.00 0.00 3.41
108 109 0.873312 CACCCGATCGCTCATGTCTG 60.873 60.000 10.32 0.00 0.00 3.51
109 110 1.300465 CCCGATCGCTCATGTCTGG 60.300 63.158 10.32 0.00 0.00 3.86
110 111 1.953138 CCGATCGCTCATGTCTGGC 60.953 63.158 10.32 0.00 0.00 4.85
116 117 4.100084 CTCATGTCTGGCGCCCCA 62.100 66.667 26.77 18.48 39.32 4.96
117 118 4.408821 TCATGTCTGGCGCCCCAC 62.409 66.667 26.77 20.67 35.79 4.61
128 129 3.361977 GCCCCACGTCATTGCGTT 61.362 61.111 3.87 0.00 43.83 4.84
129 130 2.560861 CCCCACGTCATTGCGTTG 59.439 61.111 3.87 1.85 43.83 4.10
130 131 2.126888 CCCACGTCATTGCGTTGC 60.127 61.111 3.87 0.00 43.83 4.17
131 132 2.616330 CCCACGTCATTGCGTTGCT 61.616 57.895 3.87 0.00 43.83 3.91
132 133 1.440850 CCACGTCATTGCGTTGCTG 60.441 57.895 3.87 0.00 43.83 4.41
133 134 1.279539 CACGTCATTGCGTTGCTGT 59.720 52.632 3.87 0.00 43.83 4.40
134 135 0.993251 CACGTCATTGCGTTGCTGTG 60.993 55.000 3.87 0.00 43.83 3.66
135 136 1.279539 CGTCATTGCGTTGCTGTGT 59.720 52.632 0.00 0.00 0.00 3.72
136 137 0.316937 CGTCATTGCGTTGCTGTGTT 60.317 50.000 0.00 0.00 0.00 3.32
137 138 1.838913 GTCATTGCGTTGCTGTGTTT 58.161 45.000 0.00 0.00 0.00 2.83
138 139 1.518102 GTCATTGCGTTGCTGTGTTTG 59.482 47.619 0.00 0.00 0.00 2.93
139 140 0.854062 CATTGCGTTGCTGTGTTTGG 59.146 50.000 0.00 0.00 0.00 3.28
140 141 0.249405 ATTGCGTTGCTGTGTTTGGG 60.249 50.000 0.00 0.00 0.00 4.12
141 142 2.658268 GCGTTGCTGTGTTTGGGC 60.658 61.111 0.00 0.00 0.00 5.36
142 143 3.119193 CGTTGCTGTGTTTGGGCT 58.881 55.556 0.00 0.00 0.00 5.19
143 144 1.299316 CGTTGCTGTGTTTGGGCTG 60.299 57.895 0.00 0.00 0.00 4.85
144 145 1.067916 GTTGCTGTGTTTGGGCTGG 59.932 57.895 0.00 0.00 0.00 4.85
145 146 2.132996 TTGCTGTGTTTGGGCTGGG 61.133 57.895 0.00 0.00 0.00 4.45
146 147 3.994853 GCTGTGTTTGGGCTGGGC 61.995 66.667 0.00 0.00 0.00 5.36
147 148 2.521465 CTGTGTTTGGGCTGGGCA 60.521 61.111 0.00 0.00 0.00 5.36
148 149 1.909781 CTGTGTTTGGGCTGGGCAT 60.910 57.895 0.00 0.00 0.00 4.40
149 150 1.459158 TGTGTTTGGGCTGGGCATT 60.459 52.632 0.00 0.00 0.00 3.56
150 151 1.004679 GTGTTTGGGCTGGGCATTG 60.005 57.895 0.00 0.00 0.00 2.82
151 152 2.215625 TGTTTGGGCTGGGCATTGG 61.216 57.895 0.00 0.00 0.00 3.16
152 153 2.607134 TTTGGGCTGGGCATTGGG 60.607 61.111 0.00 0.00 0.00 4.12
178 179 2.025589 GCTGGGCCAAGTAAGTCTAC 57.974 55.000 9.48 0.00 0.00 2.59
179 180 1.278127 GCTGGGCCAAGTAAGTCTACA 59.722 52.381 9.48 0.00 0.00 2.74
180 181 2.092914 GCTGGGCCAAGTAAGTCTACAT 60.093 50.000 9.48 0.00 0.00 2.29
181 182 3.798202 CTGGGCCAAGTAAGTCTACATC 58.202 50.000 8.04 0.00 0.00 3.06
182 183 2.167693 TGGGCCAAGTAAGTCTACATCG 59.832 50.000 2.13 0.00 0.00 3.84
183 184 2.167900 GGGCCAAGTAAGTCTACATCGT 59.832 50.000 4.39 0.00 0.00 3.73
184 185 3.382546 GGGCCAAGTAAGTCTACATCGTA 59.617 47.826 4.39 0.00 0.00 3.43
185 186 4.038883 GGGCCAAGTAAGTCTACATCGTAT 59.961 45.833 4.39 0.00 0.00 3.06
186 187 5.242393 GGGCCAAGTAAGTCTACATCGTATA 59.758 44.000 4.39 0.00 0.00 1.47
187 188 6.071503 GGGCCAAGTAAGTCTACATCGTATAT 60.072 42.308 4.39 0.00 0.00 0.86
188 189 7.376615 GGCCAAGTAAGTCTACATCGTATATT 58.623 38.462 0.00 0.00 0.00 1.28
189 190 7.328737 GGCCAAGTAAGTCTACATCGTATATTG 59.671 40.741 0.00 0.00 0.00 1.90
190 191 8.080417 GCCAAGTAAGTCTACATCGTATATTGA 58.920 37.037 0.00 0.00 0.00 2.57
234 235 7.489574 TTTGCACAAAATTCTTTGGTATTCC 57.510 32.000 0.00 0.00 45.30 3.01
235 236 6.166984 TGCACAAAATTCTTTGGTATTCCA 57.833 33.333 2.93 0.00 45.30 3.53
236 237 6.222389 TGCACAAAATTCTTTGGTATTCCAG 58.778 36.000 2.93 0.00 45.30 3.86
237 238 5.639082 GCACAAAATTCTTTGGTATTCCAGG 59.361 40.000 2.93 0.00 45.30 4.45
238 239 6.165577 CACAAAATTCTTTGGTATTCCAGGG 58.834 40.000 2.93 0.00 45.30 4.45
239 240 6.014669 CACAAAATTCTTTGGTATTCCAGGGA 60.015 38.462 2.93 0.00 45.30 4.20
240 241 6.556874 ACAAAATTCTTTGGTATTCCAGGGAA 59.443 34.615 2.75 2.75 45.30 3.97
241 242 7.237471 ACAAAATTCTTTGGTATTCCAGGGAAT 59.763 33.333 17.09 17.09 45.30 3.01
242 243 8.757877 CAAAATTCTTTGGTATTCCAGGGAATA 58.242 33.333 15.15 15.15 45.22 1.75
257 258 1.709115 GGAATACCCAGGAATACCCCC 59.291 57.143 0.00 0.00 36.73 5.40
258 259 2.424793 GAATACCCAGGAATACCCCCA 58.575 52.381 0.00 0.00 36.73 4.96
259 260 2.133858 ATACCCAGGAATACCCCCAG 57.866 55.000 0.00 0.00 36.73 4.45
260 261 0.696485 TACCCAGGAATACCCCCAGC 60.696 60.000 0.00 0.00 36.73 4.85
261 262 1.697754 CCCAGGAATACCCCCAGCT 60.698 63.158 0.00 0.00 36.73 4.24
262 263 1.709994 CCCAGGAATACCCCCAGCTC 61.710 65.000 0.00 0.00 36.73 4.09
263 264 1.709994 CCAGGAATACCCCCAGCTCC 61.710 65.000 0.00 0.00 36.73 4.70
264 265 1.766461 AGGAATACCCCCAGCTCCG 60.766 63.158 0.00 0.00 36.73 4.63
265 266 2.111251 GAATACCCCCAGCTCCGC 59.889 66.667 0.00 0.00 0.00 5.54
266 267 3.477578 GAATACCCCCAGCTCCGCC 62.478 68.421 0.00 0.00 0.00 6.13
267 268 4.815973 ATACCCCCAGCTCCGCCA 62.816 66.667 0.00 0.00 0.00 5.69
268 269 4.815973 TACCCCCAGCTCCGCCAT 62.816 66.667 0.00 0.00 0.00 4.40
278 279 2.286905 TCCGCCATGGGAGGAGAT 59.713 61.111 15.13 0.00 46.40 2.75
279 280 1.838846 TCCGCCATGGGAGGAGATC 60.839 63.158 15.13 0.00 46.40 2.75
280 281 2.888447 CCGCCATGGGAGGAGATCC 61.888 68.421 15.13 0.00 45.77 3.36
294 295 6.374565 GAGGAGATCCAAGTTTGAATCATG 57.625 41.667 0.92 0.00 38.89 3.07
295 296 4.643784 AGGAGATCCAAGTTTGAATCATGC 59.356 41.667 0.92 0.00 38.89 4.06
296 297 4.497006 GGAGATCCAAGTTTGAATCATGCG 60.497 45.833 0.00 0.00 35.64 4.73
297 298 3.379372 AGATCCAAGTTTGAATCATGCGG 59.621 43.478 0.00 0.00 0.00 5.69
298 299 2.789213 TCCAAGTTTGAATCATGCGGA 58.211 42.857 0.00 0.00 0.00 5.54
299 300 3.153130 TCCAAGTTTGAATCATGCGGAA 58.847 40.909 0.00 0.00 0.00 4.30
300 301 3.191162 TCCAAGTTTGAATCATGCGGAAG 59.809 43.478 0.00 0.00 0.00 3.46
301 302 3.191162 CCAAGTTTGAATCATGCGGAAGA 59.809 43.478 0.00 0.00 0.00 2.87
304 305 5.452078 AGTTTGAATCATGCGGAAGAAAA 57.548 34.783 0.00 0.00 0.00 2.29
309 310 8.707839 GTTTGAATCATGCGGAAGAAAATTTAA 58.292 29.630 0.00 0.00 0.00 1.52
315 316 6.376864 TCATGCGGAAGAAAATTTAAGGATCA 59.623 34.615 0.00 0.00 0.00 2.92
316 317 5.949735 TGCGGAAGAAAATTTAAGGATCAC 58.050 37.500 0.00 0.00 0.00 3.06
341 342 8.654997 ACTGTTGGAGTGCTCTTATATATTCAT 58.345 33.333 0.00 0.00 31.75 2.57
345 346 8.193953 TGGAGTGCTCTTATATATTCATGTGA 57.806 34.615 0.00 0.00 0.00 3.58
367 368 3.827898 GCTCTCCCTCGGGTGACG 61.828 72.222 1.18 1.43 46.11 4.35
368 369 3.827898 CTCTCCCTCGGGTGACGC 61.828 72.222 1.18 0.00 43.86 5.19
374 376 1.301401 CCTCGGGTGACGCTTCAAA 60.301 57.895 0.00 0.00 43.86 2.69
401 403 5.419760 AAAAACCTCTACGAGCTGTTTTC 57.580 39.130 8.67 0.00 35.03 2.29
408 410 5.418310 TCTACGAGCTGTTTTCCTTTTTG 57.582 39.130 0.00 0.00 0.00 2.44
439 441 1.667724 CCTCATTAACTTGCCGCTCTG 59.332 52.381 0.00 0.00 0.00 3.35
444 446 5.853936 TCATTAACTTGCCGCTCTGTATAT 58.146 37.500 0.00 0.00 0.00 0.86
452 454 2.599848 GCCGCTCTGTATATTTTGCGTG 60.600 50.000 0.00 0.00 41.51 5.34
454 456 3.302480 CCGCTCTGTATATTTTGCGTGAC 60.302 47.826 0.00 0.00 41.51 3.67
479 481 5.046304 CCAAGTTTCATCCAGGAGAACTCTA 60.046 44.000 13.35 0.00 0.00 2.43
485 487 5.333581 TCATCCAGGAGAACTCTAACAAGA 58.666 41.667 0.00 0.00 0.00 3.02
491 493 6.352565 CCAGGAGAACTCTAACAAGATGGAAT 60.353 42.308 1.86 0.00 0.00 3.01
492 494 7.147655 CCAGGAGAACTCTAACAAGATGGAATA 60.148 40.741 1.86 0.00 0.00 1.75
493 495 7.708752 CAGGAGAACTCTAACAAGATGGAATAC 59.291 40.741 1.86 0.00 0.00 1.89
494 496 7.621683 AGGAGAACTCTAACAAGATGGAATACT 59.378 37.037 1.86 0.00 0.00 2.12
495 497 7.923878 GGAGAACTCTAACAAGATGGAATACTC 59.076 40.741 1.86 0.00 0.00 2.59
496 498 7.787028 AGAACTCTAACAAGATGGAATACTCC 58.213 38.462 0.00 0.00 42.81 3.85
497 499 6.487299 ACTCTAACAAGATGGAATACTCCC 57.513 41.667 0.00 0.00 41.64 4.30
498 500 6.206042 ACTCTAACAAGATGGAATACTCCCT 58.794 40.000 0.00 0.00 41.64 4.20
499 501 6.325286 ACTCTAACAAGATGGAATACTCCCTC 59.675 42.308 0.00 0.00 41.64 4.30
500 502 4.779993 AACAAGATGGAATACTCCCTCC 57.220 45.455 0.00 0.00 41.64 4.30
501 503 3.736094 ACAAGATGGAATACTCCCTCCA 58.264 45.455 0.00 0.00 45.65 3.86
537 539 9.651913 ACTTCGCATATAAAATTTGGTCAAAAT 57.348 25.926 0.00 0.00 40.32 1.82
539 541 9.645059 TTCGCATATAAAATTTGGTCAAAATCA 57.355 25.926 0.00 0.00 37.51 2.57
540 542 9.645059 TCGCATATAAAATTTGGTCAAAATCAA 57.355 25.926 0.00 0.00 37.51 2.57
548 550 9.442047 AAAATTTGGTCAAAATCAAACTACACA 57.558 25.926 0.00 0.00 37.51 3.72
549 551 9.442047 AAATTTGGTCAAAATCAAACTACACAA 57.558 25.926 0.00 0.00 37.51 3.33
550 552 9.442047 AATTTGGTCAAAATCAAACTACACAAA 57.558 25.926 0.00 0.00 37.51 2.83
551 553 8.472683 TTTGGTCAAAATCAAACTACACAAAG 57.527 30.769 0.00 0.00 0.00 2.77
552 554 7.164230 TGGTCAAAATCAAACTACACAAAGT 57.836 32.000 0.00 0.00 0.00 2.66
553 555 7.607250 TGGTCAAAATCAAACTACACAAAGTT 58.393 30.769 0.00 0.00 41.46 2.66
564 566 8.840833 AAACTACACAAAGTTTGACCAAATTT 57.159 26.923 22.23 11.30 45.60 1.82
565 567 9.930693 AAACTACACAAAGTTTGACCAAATTTA 57.069 25.926 22.23 0.00 45.60 1.40
634 636 8.865590 TGAAAATATGTTTCATGATGCATCTG 57.134 30.769 26.32 20.36 33.90 2.90
635 637 8.688151 TGAAAATATGTTTCATGATGCATCTGA 58.312 29.630 26.32 22.04 33.90 3.27
636 638 9.692749 GAAAATATGTTTCATGATGCATCTGAT 57.307 29.630 26.32 10.77 0.00 2.90
704 706 7.484035 AGTTAGTCAAACTCTACAAAGCTTG 57.516 36.000 0.00 0.00 45.64 4.01
705 707 7.272978 AGTTAGTCAAACTCTACAAAGCTTGA 58.727 34.615 0.00 0.00 45.64 3.02
706 708 7.934120 AGTTAGTCAAACTCTACAAAGCTTGAT 59.066 33.333 0.00 0.00 45.64 2.57
707 709 8.560374 GTTAGTCAAACTCTACAAAGCTTGATT 58.440 33.333 0.00 0.00 35.05 2.57
708 710 7.573968 AGTCAAACTCTACAAAGCTTGATTT 57.426 32.000 0.00 0.00 0.00 2.17
709 711 8.000780 AGTCAAACTCTACAAAGCTTGATTTT 57.999 30.769 0.00 0.00 0.00 1.82
710 712 7.917505 AGTCAAACTCTACAAAGCTTGATTTTG 59.082 33.333 15.47 15.47 40.48 2.44
711 713 7.915397 GTCAAACTCTACAAAGCTTGATTTTGA 59.085 33.333 18.21 18.21 38.55 2.69
712 714 7.915397 TCAAACTCTACAAAGCTTGATTTTGAC 59.085 33.333 18.21 0.00 38.55 3.18
713 715 7.573968 AACTCTACAAAGCTTGATTTTGACT 57.426 32.000 0.00 0.00 38.55 3.41
714 716 8.677148 AACTCTACAAAGCTTGATTTTGACTA 57.323 30.769 0.00 0.00 38.55 2.59
715 717 8.677148 ACTCTACAAAGCTTGATTTTGACTAA 57.323 30.769 0.00 0.00 38.55 2.24
716 718 9.120538 ACTCTACAAAGCTTGATTTTGACTAAA 57.879 29.630 0.00 0.00 38.55 1.85
717 719 9.387123 CTCTACAAAGCTTGATTTTGACTAAAC 57.613 33.333 0.00 0.00 38.55 2.01
718 720 8.349983 TCTACAAAGCTTGATTTTGACTAAACC 58.650 33.333 0.00 0.00 38.55 3.27
719 721 7.112452 ACAAAGCTTGATTTTGACTAAACCT 57.888 32.000 0.00 0.00 38.55 3.50
720 722 7.555965 ACAAAGCTTGATTTTGACTAAACCTT 58.444 30.769 0.00 0.00 38.55 3.50
721 723 7.492344 ACAAAGCTTGATTTTGACTAAACCTTG 59.508 33.333 0.00 0.00 38.55 3.61
722 724 6.959639 AGCTTGATTTTGACTAAACCTTGA 57.040 33.333 0.00 0.00 0.00 3.02
723 725 6.739112 AGCTTGATTTTGACTAAACCTTGAC 58.261 36.000 0.00 0.00 0.00 3.18
724 726 6.547510 AGCTTGATTTTGACTAAACCTTGACT 59.452 34.615 0.00 0.00 0.00 3.41
725 727 7.719633 AGCTTGATTTTGACTAAACCTTGACTA 59.280 33.333 0.00 0.00 0.00 2.59
726 728 8.349983 GCTTGATTTTGACTAAACCTTGACTAA 58.650 33.333 0.00 0.00 0.00 2.24
752 754 4.537135 ACGGAGAGAGTATTTGCAAAGA 57.463 40.909 18.19 10.58 0.00 2.52
785 787 5.652014 TGTGCTTCATTTATTTCTAGGTGGG 59.348 40.000 0.00 0.00 0.00 4.61
790 792 5.776358 TCATTTATTTCTAGGTGGGCCATT 58.224 37.500 10.70 3.78 37.19 3.16
875 880 3.212682 TCGGCCAACAGCGCAAAA 61.213 55.556 11.47 0.00 45.17 2.44
930 937 0.452122 CTGCGCTTTAAAACGACCCG 60.452 55.000 14.82 0.51 0.00 5.28
941 948 1.300971 AACGACCCGAGTTCGATCGA 61.301 55.000 24.56 15.15 45.56 3.59
969 976 4.143543 TCAACACAGATGAATCAAAGCCA 58.856 39.130 0.00 0.00 0.00 4.75
1004 1012 2.751436 CCACTCCGGCAACATGGG 60.751 66.667 0.00 0.00 0.00 4.00
1006 1014 4.047125 ACTCCGGCAACATGGGGG 62.047 66.667 0.00 0.00 0.00 5.40
1119 1171 2.372690 CGTCGGCGTTCTCCACAAG 61.373 63.158 6.85 0.00 0.00 3.16
1151 1203 3.842923 CCCCGACGAGCTGCTCAT 61.843 66.667 27.46 14.80 0.00 2.90
1431 1938 3.099141 CCACCCTTCCTTGCACAATATT 58.901 45.455 0.00 0.00 0.00 1.28
1941 2448 1.677966 CCAGGAGGAGGACGACGAA 60.678 63.158 0.00 0.00 36.89 3.85
2105 2612 1.949525 GCTCAACAGAAAGACCAAGCA 59.050 47.619 0.00 0.00 0.00 3.91
2112 2619 4.718961 ACAGAAAGACCAAGCAGTATGTT 58.281 39.130 0.00 0.00 39.31 2.71
2115 2622 3.788227 AAGACCAAGCAGTATGTTCCA 57.212 42.857 0.00 0.00 39.31 3.53
2163 2670 1.077501 CATCCATTCTGGTGGCCGT 60.078 57.895 0.00 0.00 39.03 5.68
2442 2952 5.713389 GGCTGATTCCATTCATCATTATCCA 59.287 40.000 0.00 0.00 30.15 3.41
2450 2960 9.964354 TTCCATTCATCATTATCCAGTATTAGG 57.036 33.333 0.00 0.00 0.00 2.69
2461 2971 0.622446 AGTATTAGGGGTTGGGGCGT 60.622 55.000 0.00 0.00 0.00 5.68
2491 3001 3.721868 CCTCCTGAGGCGGGTTTA 58.278 61.111 0.00 0.00 42.44 2.01
2538 3048 0.099968 CAGCAGCCATGTTTCATCCG 59.900 55.000 0.00 0.00 0.00 4.18
2545 3055 2.086869 CCATGTTTCATCCGCAGTCTT 58.913 47.619 0.00 0.00 0.00 3.01
2546 3056 2.159476 CCATGTTTCATCCGCAGTCTTG 60.159 50.000 0.00 0.00 0.00 3.02
2731 3241 1.003118 TGCTCCGCCATCTACAAAACT 59.997 47.619 0.00 0.00 0.00 2.66
2801 3315 0.544223 GAAAGAGGGGGAGGAAGAGC 59.456 60.000 0.00 0.00 0.00 4.09
2803 3317 0.178861 AAGAGGGGGAGGAAGAGCAA 60.179 55.000 0.00 0.00 0.00 3.91
2804 3318 0.912006 AGAGGGGGAGGAAGAGCAAC 60.912 60.000 0.00 0.00 0.00 4.17
2805 3319 1.151810 AGGGGGAGGAAGAGCAACA 60.152 57.895 0.00 0.00 0.00 3.33
2806 3320 0.772124 AGGGGGAGGAAGAGCAACAA 60.772 55.000 0.00 0.00 0.00 2.83
2816 3570 3.244596 GGAAGAGCAACAAACCTAGGAGT 60.245 47.826 17.98 8.14 0.00 3.85
2909 3663 0.874390 CAATCCACACCACCTTGTCG 59.126 55.000 0.00 0.00 0.00 4.35
2932 3686 7.275999 GTCGGTGACCTTTTTAGAGAGATTTAG 59.724 40.741 0.00 0.00 0.00 1.85
2971 3748 9.220767 GGAATCCAGTTAACCTAATATGACATC 57.779 37.037 0.88 0.00 0.00 3.06
2972 3749 9.220767 GAATCCAGTTAACCTAATATGACATCC 57.779 37.037 0.88 0.00 0.00 3.51
2973 3750 7.074653 TCCAGTTAACCTAATATGACATCCC 57.925 40.000 0.88 0.00 0.00 3.85
2976 3753 7.777910 CCAGTTAACCTAATATGACATCCCAAA 59.222 37.037 0.88 0.00 0.00 3.28
3018 3796 2.896745 AGCAAACCTTCCAGCAAAAG 57.103 45.000 0.00 0.00 0.00 2.27
3090 3909 9.476202 AACTGGAAAATTAAGCAACAAGAATAC 57.524 29.630 0.00 0.00 0.00 1.89
3106 3925 7.202526 ACAAGAATACCACACTTGAATTGTTG 58.797 34.615 12.04 0.00 42.12 3.33
3109 3928 8.099364 AGAATACCACACTTGAATTGTTGTAG 57.901 34.615 5.97 0.00 30.93 2.74
3223 4042 5.482908 AGTAAGCTCTGGTTGATGTACTTG 58.517 41.667 0.00 0.00 0.00 3.16
3242 4061 5.368145 ACTTGACATAAGTTCAGTTCAGCA 58.632 37.500 0.00 0.00 0.00 4.41
3289 4108 8.510505 AGTTCTGAAGCTTTTAGCATTCTAAAG 58.489 33.333 0.00 0.00 45.56 1.85
3299 4118 4.307032 AGCATTCTAAAGGCTTGAAGGA 57.693 40.909 13.94 5.01 33.21 3.36
3311 4130 3.070302 GGCTTGAAGGATACCTGACCTAG 59.930 52.174 0.00 0.00 35.25 3.02
3372 4191 2.301870 GACATAGTCCCCAGTCAACACA 59.698 50.000 0.00 0.00 0.00 3.72
3478 4301 2.546195 TAACACGTGGTTTGCAACAC 57.454 45.000 21.57 4.17 40.96 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.826672 TCCCCTAACCTAGCGCTAGC 60.827 60.000 34.26 4.06 45.58 3.42
21 22 1.614413 CTTCCCCTAACCTAGCGCTAG 59.386 57.143 33.03 33.03 0.00 3.42
22 23 1.700955 CTTCCCCTAACCTAGCGCTA 58.299 55.000 17.75 17.75 0.00 4.26
23 24 1.049289 CCTTCCCCTAACCTAGCGCT 61.049 60.000 17.26 17.26 0.00 5.92
24 25 1.446366 CCTTCCCCTAACCTAGCGC 59.554 63.158 0.00 0.00 0.00 5.92
25 26 1.408453 CCCCTTCCCCTAACCTAGCG 61.408 65.000 0.00 0.00 0.00 4.26
26 27 0.030399 TCCCCTTCCCCTAACCTAGC 60.030 60.000 0.00 0.00 0.00 3.42
27 28 2.581479 TTCCCCTTCCCCTAACCTAG 57.419 55.000 0.00 0.00 0.00 3.02
28 29 2.565923 CCTTTCCCCTTCCCCTAACCTA 60.566 54.545 0.00 0.00 0.00 3.08
29 30 1.682478 CTTTCCCCTTCCCCTAACCT 58.318 55.000 0.00 0.00 0.00 3.50
30 31 0.629596 CCTTTCCCCTTCCCCTAACC 59.370 60.000 0.00 0.00 0.00 2.85
31 32 0.629596 CCCTTTCCCCTTCCCCTAAC 59.370 60.000 0.00 0.00 0.00 2.34
32 33 0.554112 CCCCTTTCCCCTTCCCCTAA 60.554 60.000 0.00 0.00 0.00 2.69
33 34 1.085988 CCCCTTTCCCCTTCCCCTA 59.914 63.158 0.00 0.00 0.00 3.53
34 35 2.165119 ATCCCCTTTCCCCTTCCCCT 62.165 60.000 0.00 0.00 0.00 4.79
35 36 1.228920 AATCCCCTTTCCCCTTCCCC 61.229 60.000 0.00 0.00 0.00 4.81
36 37 0.261991 GAATCCCCTTTCCCCTTCCC 59.738 60.000 0.00 0.00 0.00 3.97
37 38 0.106669 CGAATCCCCTTTCCCCTTCC 60.107 60.000 0.00 0.00 0.00 3.46
38 39 0.916809 TCGAATCCCCTTTCCCCTTC 59.083 55.000 0.00 0.00 0.00 3.46
39 40 1.608425 ATCGAATCCCCTTTCCCCTT 58.392 50.000 0.00 0.00 0.00 3.95
40 41 1.608425 AATCGAATCCCCTTTCCCCT 58.392 50.000 0.00 0.00 0.00 4.79
41 42 2.430694 CAAAATCGAATCCCCTTTCCCC 59.569 50.000 0.00 0.00 0.00 4.81
42 43 2.430694 CCAAAATCGAATCCCCTTTCCC 59.569 50.000 0.00 0.00 0.00 3.97
43 44 3.096852 ACCAAAATCGAATCCCCTTTCC 58.903 45.455 0.00 0.00 0.00 3.13
44 45 4.017126 AGACCAAAATCGAATCCCCTTTC 58.983 43.478 0.00 0.00 0.00 2.62
45 46 3.763897 CAGACCAAAATCGAATCCCCTTT 59.236 43.478 0.00 0.00 0.00 3.11
46 47 3.356290 CAGACCAAAATCGAATCCCCTT 58.644 45.455 0.00 0.00 0.00 3.95
47 48 2.945890 GCAGACCAAAATCGAATCCCCT 60.946 50.000 0.00 0.00 0.00 4.79
48 49 1.405463 GCAGACCAAAATCGAATCCCC 59.595 52.381 0.00 0.00 0.00 4.81
49 50 2.369394 AGCAGACCAAAATCGAATCCC 58.631 47.619 0.00 0.00 0.00 3.85
50 51 4.192317 AGTAGCAGACCAAAATCGAATCC 58.808 43.478 0.00 0.00 0.00 3.01
51 52 4.870426 TGAGTAGCAGACCAAAATCGAATC 59.130 41.667 0.00 0.00 0.00 2.52
52 53 4.631813 GTGAGTAGCAGACCAAAATCGAAT 59.368 41.667 0.00 0.00 0.00 3.34
53 54 3.994392 GTGAGTAGCAGACCAAAATCGAA 59.006 43.478 0.00 0.00 0.00 3.71
54 55 3.585862 GTGAGTAGCAGACCAAAATCGA 58.414 45.455 0.00 0.00 0.00 3.59
55 56 2.345641 CGTGAGTAGCAGACCAAAATCG 59.654 50.000 0.00 0.00 0.00 3.34
56 57 2.094417 GCGTGAGTAGCAGACCAAAATC 59.906 50.000 0.00 0.00 34.19 2.17
57 58 2.076863 GCGTGAGTAGCAGACCAAAAT 58.923 47.619 0.00 0.00 34.19 1.82
58 59 1.508632 GCGTGAGTAGCAGACCAAAA 58.491 50.000 0.00 0.00 34.19 2.44
59 60 0.666274 CGCGTGAGTAGCAGACCAAA 60.666 55.000 0.00 0.00 34.19 3.28
60 61 1.080772 CGCGTGAGTAGCAGACCAA 60.081 57.895 0.00 0.00 34.19 3.67
61 62 2.566529 CGCGTGAGTAGCAGACCA 59.433 61.111 0.00 0.00 34.19 4.02
62 63 2.881352 GCGCGTGAGTAGCAGACC 60.881 66.667 8.43 0.00 36.98 3.85
63 64 3.241059 CGCGCGTGAGTAGCAGAC 61.241 66.667 24.19 0.00 36.86 3.51
64 65 3.382591 CTCGCGCGTGAGTAGCAGA 62.383 63.158 35.29 7.36 36.86 4.26
65 66 2.946597 CTCGCGCGTGAGTAGCAG 60.947 66.667 35.29 14.97 36.86 4.24
66 67 3.428282 TCTCGCGCGTGAGTAGCA 61.428 61.111 39.42 23.77 37.28 3.49
67 68 2.945066 GTCTCGCGCGTGAGTAGC 60.945 66.667 39.42 28.44 37.28 3.58
68 69 2.277373 GGTCTCGCGCGTGAGTAG 60.277 66.667 39.42 22.49 37.28 2.57
69 70 3.035576 CTGGTCTCGCGCGTGAGTA 62.036 63.158 39.42 27.69 37.28 2.59
70 71 4.406173 CTGGTCTCGCGCGTGAGT 62.406 66.667 39.42 0.00 37.28 3.41
71 72 4.103103 TCTGGTCTCGCGCGTGAG 62.103 66.667 37.26 37.26 37.33 3.51
72 73 4.400109 GTCTGGTCTCGCGCGTGA 62.400 66.667 30.98 29.65 0.00 4.35
73 74 4.700365 TGTCTGGTCTCGCGCGTG 62.700 66.667 30.98 27.67 0.00 5.34
74 75 4.702081 GTGTCTGGTCTCGCGCGT 62.702 66.667 30.98 0.00 0.00 6.01
77 78 4.778415 CGGGTGTCTGGTCTCGCG 62.778 72.222 0.00 0.00 0.00 5.87
78 79 2.615262 GATCGGGTGTCTGGTCTCGC 62.615 65.000 0.00 0.00 0.00 5.03
79 80 1.433879 GATCGGGTGTCTGGTCTCG 59.566 63.158 0.00 0.00 0.00 4.04
80 81 1.433879 CGATCGGGTGTCTGGTCTC 59.566 63.158 7.38 0.00 0.00 3.36
81 82 2.711922 GCGATCGGGTGTCTGGTCT 61.712 63.158 18.30 0.00 0.00 3.85
82 83 2.202756 GCGATCGGGTGTCTGGTC 60.203 66.667 18.30 0.00 0.00 4.02
83 84 2.680352 AGCGATCGGGTGTCTGGT 60.680 61.111 18.30 0.00 0.00 4.00
84 85 2.021068 ATGAGCGATCGGGTGTCTGG 62.021 60.000 18.30 0.00 0.00 3.86
85 86 0.873312 CATGAGCGATCGGGTGTCTG 60.873 60.000 18.30 0.00 0.00 3.51
86 87 1.323271 ACATGAGCGATCGGGTGTCT 61.323 55.000 18.30 4.40 0.00 3.41
87 88 0.872021 GACATGAGCGATCGGGTGTC 60.872 60.000 18.30 14.76 0.00 3.67
88 89 1.141881 GACATGAGCGATCGGGTGT 59.858 57.895 18.30 5.97 0.00 4.16
89 90 0.873312 CAGACATGAGCGATCGGGTG 60.873 60.000 18.30 0.69 0.00 4.61
90 91 1.439228 CAGACATGAGCGATCGGGT 59.561 57.895 18.30 2.90 0.00 5.28
91 92 1.300465 CCAGACATGAGCGATCGGG 60.300 63.158 18.30 1.81 0.00 5.14
92 93 1.953138 GCCAGACATGAGCGATCGG 60.953 63.158 18.30 1.63 0.00 4.18
93 94 2.298629 CGCCAGACATGAGCGATCG 61.299 63.158 11.69 11.69 44.05 3.69
94 95 2.593134 GCGCCAGACATGAGCGATC 61.593 63.158 21.66 0.00 44.05 3.69
95 96 2.587194 GCGCCAGACATGAGCGAT 60.587 61.111 21.66 0.00 44.05 4.58
96 97 4.819761 GGCGCCAGACATGAGCGA 62.820 66.667 24.80 0.00 44.05 4.93
99 100 4.100084 TGGGGCGCCAGACATGAG 62.100 66.667 30.85 0.00 0.00 2.90
100 101 4.408821 GTGGGGCGCCAGACATGA 62.409 66.667 30.85 0.00 0.00 3.07
117 118 0.316937 AACACAGCAACGCAATGACG 60.317 50.000 0.00 0.00 39.50 4.35
118 119 1.518102 CAAACACAGCAACGCAATGAC 59.482 47.619 0.00 0.00 0.00 3.06
119 120 1.535649 CCAAACACAGCAACGCAATGA 60.536 47.619 0.00 0.00 0.00 2.57
120 121 0.854062 CCAAACACAGCAACGCAATG 59.146 50.000 0.00 0.00 0.00 2.82
121 122 0.249405 CCCAAACACAGCAACGCAAT 60.249 50.000 0.00 0.00 0.00 3.56
122 123 1.140589 CCCAAACACAGCAACGCAA 59.859 52.632 0.00 0.00 0.00 4.85
123 124 2.804167 CCCAAACACAGCAACGCA 59.196 55.556 0.00 0.00 0.00 5.24
124 125 2.658268 GCCCAAACACAGCAACGC 60.658 61.111 0.00 0.00 0.00 4.84
125 126 1.299316 CAGCCCAAACACAGCAACG 60.299 57.895 0.00 0.00 0.00 4.10
126 127 1.067916 CCAGCCCAAACACAGCAAC 59.932 57.895 0.00 0.00 0.00 4.17
127 128 2.132996 CCCAGCCCAAACACAGCAA 61.133 57.895 0.00 0.00 0.00 3.91
128 129 2.521465 CCCAGCCCAAACACAGCA 60.521 61.111 0.00 0.00 0.00 4.41
129 130 3.994853 GCCCAGCCCAAACACAGC 61.995 66.667 0.00 0.00 0.00 4.40
130 131 1.474332 AATGCCCAGCCCAAACACAG 61.474 55.000 0.00 0.00 0.00 3.66
131 132 1.459158 AATGCCCAGCCCAAACACA 60.459 52.632 0.00 0.00 0.00 3.72
132 133 1.004679 CAATGCCCAGCCCAAACAC 60.005 57.895 0.00 0.00 0.00 3.32
133 134 2.215625 CCAATGCCCAGCCCAAACA 61.216 57.895 0.00 0.00 0.00 2.83
134 135 2.664398 CCAATGCCCAGCCCAAAC 59.336 61.111 0.00 0.00 0.00 2.93
135 136 2.607134 CCCAATGCCCAGCCCAAA 60.607 61.111 0.00 0.00 0.00 3.28
159 160 1.278127 TGTAGACTTACTTGGCCCAGC 59.722 52.381 3.14 0.00 0.00 4.85
160 161 3.738281 CGATGTAGACTTACTTGGCCCAG 60.738 52.174 0.00 0.00 0.00 4.45
161 162 2.167693 CGATGTAGACTTACTTGGCCCA 59.832 50.000 0.00 0.00 0.00 5.36
162 163 2.167900 ACGATGTAGACTTACTTGGCCC 59.832 50.000 0.00 0.00 0.00 5.80
163 164 3.521947 ACGATGTAGACTTACTTGGCC 57.478 47.619 0.00 0.00 0.00 5.36
164 165 8.080417 TCAATATACGATGTAGACTTACTTGGC 58.920 37.037 0.00 0.00 0.00 4.52
207 208 9.949174 GAATACCAAAGAATTTTGTGCAAAATT 57.051 25.926 26.12 26.12 43.38 1.82
208 209 8.567104 GGAATACCAAAGAATTTTGTGCAAAAT 58.433 29.630 14.88 14.88 41.68 1.82
209 210 7.554118 TGGAATACCAAAGAATTTTGTGCAAAA 59.446 29.630 11.77 11.77 43.91 2.44
210 211 7.050377 TGGAATACCAAAGAATTTTGTGCAAA 58.950 30.769 0.00 0.00 43.91 3.68
211 212 6.586344 TGGAATACCAAAGAATTTTGTGCAA 58.414 32.000 0.00 0.00 43.91 4.08
212 213 6.166984 TGGAATACCAAAGAATTTTGTGCA 57.833 33.333 0.00 0.00 43.91 4.57
213 214 5.639082 CCTGGAATACCAAAGAATTTTGTGC 59.361 40.000 0.00 0.00 46.32 4.57
214 215 6.014669 TCCCTGGAATACCAAAGAATTTTGTG 60.015 38.462 0.00 0.00 46.32 3.33
215 216 6.081356 TCCCTGGAATACCAAAGAATTTTGT 58.919 36.000 0.00 0.00 46.32 2.83
216 217 6.603940 TCCCTGGAATACCAAAGAATTTTG 57.396 37.500 0.00 0.00 46.32 2.44
217 218 7.813087 ATTCCCTGGAATACCAAAGAATTTT 57.187 32.000 9.67 0.00 46.32 1.82
237 238 1.709115 GGGGGTATTCCTGGGTATTCC 59.291 57.143 0.00 0.00 35.33 3.01
238 239 2.375509 CTGGGGGTATTCCTGGGTATTC 59.624 54.545 0.00 0.00 35.33 1.75
239 240 2.428901 CTGGGGGTATTCCTGGGTATT 58.571 52.381 0.00 0.00 35.33 1.89
240 241 2.051039 GCTGGGGGTATTCCTGGGTAT 61.051 57.143 0.00 0.00 35.33 2.73
241 242 0.696485 GCTGGGGGTATTCCTGGGTA 60.696 60.000 0.00 0.00 35.33 3.69
242 243 2.006991 GCTGGGGGTATTCCTGGGT 61.007 63.158 0.00 0.00 35.33 4.51
243 244 1.697754 AGCTGGGGGTATTCCTGGG 60.698 63.158 0.00 0.00 35.33 4.45
244 245 1.709994 GGAGCTGGGGGTATTCCTGG 61.710 65.000 0.00 0.00 35.33 4.45
245 246 1.839894 GGAGCTGGGGGTATTCCTG 59.160 63.158 0.00 0.00 35.33 3.86
246 247 1.766461 CGGAGCTGGGGGTATTCCT 60.766 63.158 0.00 0.00 35.33 3.36
247 248 2.829592 CGGAGCTGGGGGTATTCC 59.170 66.667 0.00 0.00 0.00 3.01
261 262 1.838846 GATCTCCTCCCATGGCGGA 60.839 63.158 17.23 17.23 36.56 5.54
262 263 2.746359 GATCTCCTCCCATGGCGG 59.254 66.667 6.09 9.18 0.00 6.13
263 264 1.699054 TTGGATCTCCTCCCATGGCG 61.699 60.000 6.09 0.00 44.23 5.69
264 265 0.110104 CTTGGATCTCCTCCCATGGC 59.890 60.000 6.09 0.00 44.23 4.40
265 266 1.516110 ACTTGGATCTCCTCCCATGG 58.484 55.000 4.14 4.14 44.23 3.66
266 267 3.054139 TCAAACTTGGATCTCCTCCCATG 60.054 47.826 0.00 0.00 44.23 3.66
267 268 3.192944 TCAAACTTGGATCTCCTCCCAT 58.807 45.455 0.00 0.00 44.23 4.00
268 269 2.631384 TCAAACTTGGATCTCCTCCCA 58.369 47.619 0.00 0.00 44.23 4.37
269 270 3.721087 TTCAAACTTGGATCTCCTCCC 57.279 47.619 0.00 0.00 44.23 4.30
270 271 4.848357 TGATTCAAACTTGGATCTCCTCC 58.152 43.478 11.21 0.00 42.51 4.30
271 272 5.221009 GCATGATTCAAACTTGGATCTCCTC 60.221 44.000 11.21 0.00 42.51 3.71
272 273 4.643784 GCATGATTCAAACTTGGATCTCCT 59.356 41.667 11.21 0.00 42.51 3.69
273 274 4.497006 CGCATGATTCAAACTTGGATCTCC 60.497 45.833 11.21 0.00 42.51 3.71
274 275 4.497006 CCGCATGATTCAAACTTGGATCTC 60.497 45.833 11.21 1.87 42.51 2.75
275 276 3.379372 CCGCATGATTCAAACTTGGATCT 59.621 43.478 11.21 0.00 42.51 2.75
276 277 3.378112 TCCGCATGATTCAAACTTGGATC 59.622 43.478 0.00 4.05 42.40 3.36
277 278 3.355378 TCCGCATGATTCAAACTTGGAT 58.645 40.909 0.00 0.00 0.00 3.41
278 279 2.789213 TCCGCATGATTCAAACTTGGA 58.211 42.857 0.00 0.00 0.00 3.53
279 280 3.191162 TCTTCCGCATGATTCAAACTTGG 59.809 43.478 0.00 0.00 0.00 3.61
280 281 4.424061 TCTTCCGCATGATTCAAACTTG 57.576 40.909 0.00 0.00 0.00 3.16
281 282 5.452078 TTTCTTCCGCATGATTCAAACTT 57.548 34.783 0.00 0.00 0.00 2.66
282 283 5.452078 TTTTCTTCCGCATGATTCAAACT 57.548 34.783 0.00 0.00 0.00 2.66
283 284 6.710692 AATTTTCTTCCGCATGATTCAAAC 57.289 33.333 0.00 0.00 0.00 2.93
284 285 8.824159 TTAAATTTTCTTCCGCATGATTCAAA 57.176 26.923 0.00 0.00 0.00 2.69
285 286 7.545265 CCTTAAATTTTCTTCCGCATGATTCAA 59.455 33.333 0.00 0.00 0.00 2.69
286 287 7.035004 CCTTAAATTTTCTTCCGCATGATTCA 58.965 34.615 0.00 0.00 0.00 2.57
287 288 7.257722 TCCTTAAATTTTCTTCCGCATGATTC 58.742 34.615 0.00 0.00 0.00 2.52
288 289 7.169158 TCCTTAAATTTTCTTCCGCATGATT 57.831 32.000 0.00 0.00 0.00 2.57
289 290 6.773976 TCCTTAAATTTTCTTCCGCATGAT 57.226 33.333 0.00 0.00 0.00 2.45
290 291 6.376864 TGATCCTTAAATTTTCTTCCGCATGA 59.623 34.615 0.00 0.00 0.00 3.07
291 292 6.473455 GTGATCCTTAAATTTTCTTCCGCATG 59.527 38.462 0.00 0.00 0.00 4.06
292 293 6.378280 AGTGATCCTTAAATTTTCTTCCGCAT 59.622 34.615 0.00 0.00 0.00 4.73
293 294 5.710099 AGTGATCCTTAAATTTTCTTCCGCA 59.290 36.000 0.00 0.00 0.00 5.69
294 295 6.030228 CAGTGATCCTTAAATTTTCTTCCGC 58.970 40.000 0.00 0.00 0.00 5.54
295 296 7.145932 ACAGTGATCCTTAAATTTTCTTCCG 57.854 36.000 0.00 0.00 0.00 4.30
296 297 7.814587 CCAACAGTGATCCTTAAATTTTCTTCC 59.185 37.037 0.00 0.00 0.00 3.46
297 298 8.576442 TCCAACAGTGATCCTTAAATTTTCTTC 58.424 33.333 0.00 0.00 0.00 2.87
298 299 8.477419 TCCAACAGTGATCCTTAAATTTTCTT 57.523 30.769 0.00 0.00 0.00 2.52
299 300 7.725844 ACTCCAACAGTGATCCTTAAATTTTCT 59.274 33.333 0.00 0.00 32.26 2.52
300 301 7.886338 ACTCCAACAGTGATCCTTAAATTTTC 58.114 34.615 0.00 0.00 32.26 2.29
301 302 7.839680 ACTCCAACAGTGATCCTTAAATTTT 57.160 32.000 0.00 0.00 32.26 1.82
315 316 8.023021 TGAATATATAAGAGCACTCCAACAGT 57.977 34.615 0.00 0.00 34.67 3.55
316 317 8.933807 CATGAATATATAAGAGCACTCCAACAG 58.066 37.037 0.00 0.00 0.00 3.16
331 332 7.124901 GGGAGAGCTTCCTCACATGAATATATA 59.875 40.741 0.00 0.00 45.98 0.86
341 342 2.983512 GAGGGAGAGCTTCCTCACA 58.016 57.895 18.11 0.00 46.54 3.58
345 346 2.042435 CCCGAGGGAGAGCTTCCT 60.042 66.667 0.84 0.00 45.98 3.36
401 403 2.628178 GAGGGAAACAGGGTCAAAAAGG 59.372 50.000 0.00 0.00 0.00 3.11
408 410 4.302559 AGTTAATGAGGGAAACAGGGTC 57.697 45.455 0.00 0.00 0.00 4.46
439 441 4.957759 ACTTGGGTCACGCAAAATATAC 57.042 40.909 8.84 0.00 35.96 1.47
444 446 1.819288 TGAAACTTGGGTCACGCAAAA 59.181 42.857 8.84 0.00 35.96 2.44
452 454 2.305927 TCTCCTGGATGAAACTTGGGTC 59.694 50.000 0.00 0.00 0.00 4.46
454 456 3.084786 GTTCTCCTGGATGAAACTTGGG 58.915 50.000 0.00 0.00 0.00 4.12
511 513 9.651913 ATTTTGACCAAATTTTATATGCGAAGT 57.348 25.926 0.00 0.00 30.09 3.01
513 515 9.645059 TGATTTTGACCAAATTTTATATGCGAA 57.355 25.926 0.00 0.00 35.02 4.70
514 516 9.645059 TTGATTTTGACCAAATTTTATATGCGA 57.355 25.926 0.00 0.00 35.02 5.10
522 524 9.442047 TGTGTAGTTTGATTTTGACCAAATTTT 57.558 25.926 0.00 0.00 35.02 1.82
523 525 9.442047 TTGTGTAGTTTGATTTTGACCAAATTT 57.558 25.926 0.00 0.00 35.02 1.82
524 526 9.442047 TTTGTGTAGTTTGATTTTGACCAAATT 57.558 25.926 0.00 0.00 35.02 1.82
525 527 9.097257 CTTTGTGTAGTTTGATTTTGACCAAAT 57.903 29.630 0.00 0.00 37.84 2.32
526 528 8.091449 ACTTTGTGTAGTTTGATTTTGACCAAA 58.909 29.630 0.00 0.00 0.00 3.28
527 529 7.607250 ACTTTGTGTAGTTTGATTTTGACCAA 58.393 30.769 0.00 0.00 0.00 3.67
528 530 7.164230 ACTTTGTGTAGTTTGATTTTGACCA 57.836 32.000 0.00 0.00 0.00 4.02
529 531 8.474006 AAACTTTGTGTAGTTTGATTTTGACC 57.526 30.769 0.00 0.00 44.42 4.02
539 541 8.840833 AAATTTGGTCAAACTTTGTGTAGTTT 57.159 26.923 1.44 0.00 46.42 2.66
608 610 9.476202 CAGATGCATCATGAAACATATTTTCAT 57.524 29.630 27.81 14.74 46.59 2.57
609 611 8.688151 TCAGATGCATCATGAAACATATTTTCA 58.312 29.630 27.81 12.41 41.91 2.69
610 612 9.692749 ATCAGATGCATCATGAAACATATTTTC 57.307 29.630 27.81 0.00 0.00 2.29
676 678 9.780186 AGCTTTGTAGAGTTTGACTAACTTTAT 57.220 29.630 3.78 0.00 47.00 1.40
677 679 9.609346 AAGCTTTGTAGAGTTTGACTAACTTTA 57.391 29.630 3.78 0.37 47.00 1.85
678 680 8.398665 CAAGCTTTGTAGAGTTTGACTAACTTT 58.601 33.333 0.00 1.31 47.00 2.66
679 681 7.769044 TCAAGCTTTGTAGAGTTTGACTAACTT 59.231 33.333 0.00 0.00 47.00 2.66
681 683 7.478520 TCAAGCTTTGTAGAGTTTGACTAAC 57.521 36.000 0.00 0.00 40.46 2.34
682 684 8.677148 AATCAAGCTTTGTAGAGTTTGACTAA 57.323 30.769 0.00 0.00 45.43 2.24
683 685 8.677148 AAATCAAGCTTTGTAGAGTTTGACTA 57.323 30.769 0.00 0.00 45.43 2.59
684 686 7.573968 AAATCAAGCTTTGTAGAGTTTGACT 57.426 32.000 0.00 0.00 45.43 3.41
685 687 7.915397 TCAAAATCAAGCTTTGTAGAGTTTGAC 59.085 33.333 24.39 0.00 45.43 3.18
686 688 7.915397 GTCAAAATCAAGCTTTGTAGAGTTTGA 59.085 33.333 24.39 24.39 46.28 2.69
687 689 7.917505 AGTCAAAATCAAGCTTTGTAGAGTTTG 59.082 33.333 21.80 21.80 43.41 2.93
688 690 8.000780 AGTCAAAATCAAGCTTTGTAGAGTTT 57.999 30.769 0.00 0.00 35.65 2.66
689 691 7.573968 AGTCAAAATCAAGCTTTGTAGAGTT 57.426 32.000 0.00 0.00 35.65 3.01
690 692 8.677148 TTAGTCAAAATCAAGCTTTGTAGAGT 57.323 30.769 0.00 0.00 35.65 3.24
691 693 9.387123 GTTTAGTCAAAATCAAGCTTTGTAGAG 57.613 33.333 0.00 0.00 35.65 2.43
692 694 8.349983 GGTTTAGTCAAAATCAAGCTTTGTAGA 58.650 33.333 0.00 0.00 35.65 2.59
693 695 8.352942 AGGTTTAGTCAAAATCAAGCTTTGTAG 58.647 33.333 0.00 0.00 35.65 2.74
694 696 8.232913 AGGTTTAGTCAAAATCAAGCTTTGTA 57.767 30.769 0.00 0.00 35.65 2.41
695 697 7.112452 AGGTTTAGTCAAAATCAAGCTTTGT 57.888 32.000 0.00 0.00 35.65 2.83
696 698 7.706179 TCAAGGTTTAGTCAAAATCAAGCTTTG 59.294 33.333 0.00 0.00 33.92 2.77
697 699 7.706607 GTCAAGGTTTAGTCAAAATCAAGCTTT 59.293 33.333 0.00 0.00 33.92 3.51
698 700 7.068716 AGTCAAGGTTTAGTCAAAATCAAGCTT 59.931 33.333 0.00 0.00 35.98 3.74
699 701 6.547510 AGTCAAGGTTTAGTCAAAATCAAGCT 59.452 34.615 0.00 0.00 29.89 3.74
700 702 6.739112 AGTCAAGGTTTAGTCAAAATCAAGC 58.261 36.000 0.00 0.00 29.89 4.01
727 729 6.262273 TCTTTGCAAATACTCTCTCCGTTTTT 59.738 34.615 13.23 0.00 0.00 1.94
728 730 5.763204 TCTTTGCAAATACTCTCTCCGTTTT 59.237 36.000 13.23 0.00 0.00 2.43
729 731 5.305585 TCTTTGCAAATACTCTCTCCGTTT 58.694 37.500 13.23 0.00 0.00 3.60
730 732 4.894784 TCTTTGCAAATACTCTCTCCGTT 58.105 39.130 13.23 0.00 0.00 4.44
731 733 4.537135 TCTTTGCAAATACTCTCTCCGT 57.463 40.909 13.23 0.00 0.00 4.69
732 734 4.093556 GGTTCTTTGCAAATACTCTCTCCG 59.906 45.833 13.23 0.00 0.00 4.63
733 735 4.093556 CGGTTCTTTGCAAATACTCTCTCC 59.906 45.833 13.23 6.33 0.00 3.71
734 736 4.691216 ACGGTTCTTTGCAAATACTCTCTC 59.309 41.667 13.23 1.01 0.00 3.20
735 737 4.452455 CACGGTTCTTTGCAAATACTCTCT 59.548 41.667 13.23 0.00 0.00 3.10
736 738 4.712763 CACGGTTCTTTGCAAATACTCTC 58.287 43.478 13.23 1.66 0.00 3.20
737 739 3.058224 GCACGGTTCTTTGCAAATACTCT 60.058 43.478 13.23 1.47 38.68 3.24
738 740 3.234386 GCACGGTTCTTTGCAAATACTC 58.766 45.455 13.23 7.44 38.68 2.59
739 741 2.621055 TGCACGGTTCTTTGCAAATACT 59.379 40.909 13.23 0.00 45.65 2.12
740 742 3.006659 TGCACGGTTCTTTGCAAATAC 57.993 42.857 13.23 13.34 45.65 1.89
752 754 0.961019 AATGAAGCACATGCACGGTT 59.039 45.000 6.64 0.00 45.16 4.44
785 787 5.972107 AGCATCTATTACATTCCAATGGC 57.028 39.130 0.00 0.00 40.70 4.40
829 834 4.142687 CCATTACAACGTCATGGAGGAAAC 60.143 45.833 9.39 0.00 39.02 2.78
875 880 1.373590 AACTGTTTTGCGTCGTGCCT 61.374 50.000 0.00 0.00 45.60 4.75
930 937 0.452184 TGAGGTGCTCGATCGAACTC 59.548 55.000 19.92 21.15 32.35 3.01
941 948 2.936919 TTCATCTGTGTTGAGGTGCT 57.063 45.000 0.00 0.00 0.00 4.40
1004 1012 2.592308 GATGGAGTGGTGAGCCCC 59.408 66.667 0.00 0.00 0.00 5.80
1006 1014 1.852157 TTGGGATGGAGTGGTGAGCC 61.852 60.000 0.00 0.00 0.00 4.70
1151 1203 4.802051 GCAAGCCATGGAGCCGGA 62.802 66.667 18.40 0.00 0.00 5.14
1941 2448 2.236395 CAGGTTTATTCCCGTCTGTCCT 59.764 50.000 0.00 0.00 0.00 3.85
2105 2612 3.270877 GTGCGGAAATCTGGAACATACT 58.729 45.455 0.00 0.00 38.20 2.12
2112 2619 2.435938 GCCGTGCGGAAATCTGGA 60.436 61.111 15.45 0.00 37.50 3.86
2115 2622 1.745489 GAAGGCCGTGCGGAAATCT 60.745 57.895 15.45 2.96 37.50 2.40
2170 2677 1.941476 CTAGTTTGCACCGCGTCGAC 61.941 60.000 5.18 5.18 0.00 4.20
2442 2952 0.622446 ACGCCCCAACCCCTAATACT 60.622 55.000 0.00 0.00 0.00 2.12
2461 2971 1.127567 CAGGAGGTTCCACCAGGTGA 61.128 60.000 22.37 4.34 41.95 4.02
2488 2998 4.693095 TGAGACAACATAAGTGCGCATAAA 59.307 37.500 15.91 1.39 0.00 1.40
2491 3001 2.674852 CTGAGACAACATAAGTGCGCAT 59.325 45.455 15.91 0.00 0.00 4.73
2731 3241 4.029520 CTCTCTCCCTTTTCCATCTCTCA 58.970 47.826 0.00 0.00 0.00 3.27
2789 3303 1.248486 GTTTGTTGCTCTTCCTCCCC 58.752 55.000 0.00 0.00 0.00 4.81
2801 3315 0.517316 GCGCACTCCTAGGTTTGTTG 59.483 55.000 9.08 5.71 0.00 3.33
2803 3317 1.003718 GGCGCACTCCTAGGTTTGT 60.004 57.895 10.83 3.89 0.00 2.83
2804 3318 1.003839 TGGCGCACTCCTAGGTTTG 60.004 57.895 10.83 8.28 0.00 2.93
2805 3319 1.296715 CTGGCGCACTCCTAGGTTT 59.703 57.895 10.83 0.00 0.00 3.27
2806 3320 2.982130 CTGGCGCACTCCTAGGTT 59.018 61.111 10.83 0.00 0.00 3.50
2816 3570 3.968568 CAAGCAACAGCTGGCGCA 61.969 61.111 25.67 0.00 38.93 6.09
2833 3587 0.597118 CAGTAGCAGCTCGATCCAGC 60.597 60.000 3.85 3.85 39.99 4.85
2909 3663 7.766738 CCTCTAAATCTCTCTAAAAAGGTCACC 59.233 40.741 0.00 0.00 0.00 4.02
2932 3686 5.046288 ACTGGATTCCATCTGAATTCCTC 57.954 43.478 5.70 0.00 43.81 3.71
2940 3694 9.224267 CATATTAGGTTAACTGGATTCCATCTG 57.776 37.037 5.70 0.00 30.82 2.90
2976 3753 9.066892 TGCTTACTTTGATGTACATCTCTTTTT 57.933 29.630 30.67 15.62 38.60 1.94
2993 3770 3.295973 TGCTGGAAGGTTTGCTTACTTT 58.704 40.909 0.00 0.00 0.00 2.66
3088 3907 7.988599 AGTAACTACAACAATTCAAGTGTGGTA 59.011 33.333 5.15 5.15 34.85 3.25
3090 3909 7.259290 AGTAACTACAACAATTCAAGTGTGG 57.741 36.000 0.00 0.00 0.00 4.17
3142 3961 5.006386 GTGATTAAGGATATTGGGCCTCTG 58.994 45.833 4.53 0.00 32.07 3.35
3223 4042 6.729187 ACTTTTGCTGAACTGAACTTATGTC 58.271 36.000 0.00 0.00 0.00 3.06
3227 4046 5.235616 CCGTACTTTTGCTGAACTGAACTTA 59.764 40.000 0.00 0.00 0.00 2.24
3242 4061 6.990341 ACTTTGTGTTACTTCCGTACTTTT 57.010 33.333 0.00 0.00 0.00 2.27
3255 4074 7.148154 TGCTAAAAGCTTCAGAACTTTGTGTTA 60.148 33.333 0.00 0.00 42.97 2.41
3259 4078 5.835113 TGCTAAAAGCTTCAGAACTTTGT 57.165 34.783 0.00 5.54 42.97 2.83
3289 4108 1.840635 AGGTCAGGTATCCTTCAAGCC 59.159 52.381 0.00 0.00 0.00 4.35
3372 4191 4.890088 TGTACTAAGCGGTTGAATTGTCT 58.110 39.130 10.73 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.