Multiple sequence alignment - TraesCS7A01G204000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G204000 chr7A 100.000 9291 0 0 1 9291 166322984 166332274 0.000000e+00 17158.0
1 TraesCS7A01G204000 chr7A 96.138 751 28 1 1 750 166299286 166300036 0.000000e+00 1225.0
2 TraesCS7A01G204000 chr7A 92.727 110 7 1 3212 3321 503428817 503428709 3.470000e-34 158.0
3 TraesCS7A01G204000 chr7B 94.038 5267 204 32 3429 8610 127016985 127022226 0.000000e+00 7886.0
4 TraesCS7A01G204000 chr7B 92.019 2506 136 32 851 3315 127014477 127016959 0.000000e+00 3461.0
5 TraesCS7A01G204000 chr7B 92.719 467 16 14 8840 9291 127022591 127023054 0.000000e+00 658.0
6 TraesCS7A01G204000 chr7D 96.563 3899 91 31 4668 8559 164637722 164641584 0.000000e+00 6418.0
7 TraesCS7A01G204000 chr7D 92.610 2517 113 35 857 3321 164633883 164636378 0.000000e+00 3550.0
8 TraesCS7A01G204000 chr7D 96.003 1326 37 6 3320 4640 164636413 164637727 0.000000e+00 2141.0
9 TraesCS7A01G204000 chr7D 97.052 407 10 2 8885 9291 164643041 164643445 0.000000e+00 684.0
10 TraesCS7A01G204000 chr3A 95.995 749 30 0 2 750 368260715 368261463 0.000000e+00 1218.0
11 TraesCS7A01G204000 chr3A 95.728 749 32 0 2 750 216846624 216845876 0.000000e+00 1206.0
12 TraesCS7A01G204000 chr3A 92.398 171 12 1 3320 3489 550636494 550636324 9.320000e-60 243.0
13 TraesCS7A01G204000 chr2A 95.861 749 30 1 2 750 512347468 512346721 0.000000e+00 1210.0
14 TraesCS7A01G204000 chr2A 95.733 750 28 3 2 750 79554866 79555612 0.000000e+00 1205.0
15 TraesCS7A01G204000 chr2A 92.727 110 6 2 3212 3321 522519011 522518904 3.470000e-34 158.0
16 TraesCS7A01G204000 chr4A 95.728 749 30 1 2 750 95045897 95046643 0.000000e+00 1205.0
17 TraesCS7A01G204000 chr6A 95.594 749 33 0 2 750 473999937 473999189 0.000000e+00 1201.0
18 TraesCS7A01G204000 chr5A 95.594 749 33 0 2 750 386732603 386733351 0.000000e+00 1201.0
19 TraesCS7A01G204000 chr5A 95.358 754 34 1 2 755 644242350 644241598 0.000000e+00 1197.0
20 TraesCS7A01G204000 chr5A 85.197 304 23 8 3212 3496 141878575 141878875 9.130000e-75 292.0
21 TraesCS7A01G204000 chr5D 84.106 302 29 6 3212 3496 126569970 126570269 3.310000e-69 274.0
22 TraesCS7A01G204000 chr1A 92.442 172 13 0 3320 3491 208894036 208894207 7.210000e-61 246.0
23 TraesCS7A01G204000 chr1A 93.333 165 11 0 3326 3490 292773925 292773761 2.590000e-60 244.0
24 TraesCS7A01G204000 chr1A 93.103 116 6 2 3211 3325 208893893 208894007 1.600000e-37 169.0
25 TraesCS7A01G204000 chr1A 77.358 106 20 4 4626 4728 91104095 91104199 1.010000e-04 60.2
26 TraesCS7A01G204000 chr2D 93.789 161 10 0 3329 3489 316123179 316123019 9.320000e-60 243.0
27 TraesCS7A01G204000 chr2D 92.727 110 7 1 3212 3321 133265684 133265792 3.470000e-34 158.0
28 TraesCS7A01G204000 chr1D 93.252 163 11 0 3329 3491 150941609 150941447 3.350000e-59 241.0
29 TraesCS7A01G204000 chr1D 92.241 116 7 2 3211 3325 150941761 150941647 7.470000e-36 163.0
30 TraesCS7A01G204000 chr5B 91.860 172 13 1 3319 3489 202204835 202204664 1.210000e-58 239.0
31 TraesCS7A01G204000 chr1B 92.241 116 7 2 3211 3325 231648807 231648693 7.470000e-36 163.0
32 TraesCS7A01G204000 chr2B 92.727 110 7 1 3212 3321 189628653 189628761 3.470000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G204000 chr7A 166322984 166332274 9290 False 17158.000000 17158 100.000000 1 9291 1 chr7A.!!$F2 9290
1 TraesCS7A01G204000 chr7A 166299286 166300036 750 False 1225.000000 1225 96.138000 1 750 1 chr7A.!!$F1 749
2 TraesCS7A01G204000 chr7B 127014477 127023054 8577 False 4001.666667 7886 92.925333 851 9291 3 chr7B.!!$F1 8440
3 TraesCS7A01G204000 chr7D 164633883 164643445 9562 False 3198.250000 6418 95.557000 857 9291 4 chr7D.!!$F1 8434
4 TraesCS7A01G204000 chr3A 368260715 368261463 748 False 1218.000000 1218 95.995000 2 750 1 chr3A.!!$F1 748
5 TraesCS7A01G204000 chr3A 216845876 216846624 748 True 1206.000000 1206 95.728000 2 750 1 chr3A.!!$R1 748
6 TraesCS7A01G204000 chr2A 512346721 512347468 747 True 1210.000000 1210 95.861000 2 750 1 chr2A.!!$R1 748
7 TraesCS7A01G204000 chr2A 79554866 79555612 746 False 1205.000000 1205 95.733000 2 750 1 chr2A.!!$F1 748
8 TraesCS7A01G204000 chr4A 95045897 95046643 746 False 1205.000000 1205 95.728000 2 750 1 chr4A.!!$F1 748
9 TraesCS7A01G204000 chr6A 473999189 473999937 748 True 1201.000000 1201 95.594000 2 750 1 chr6A.!!$R1 748
10 TraesCS7A01G204000 chr5A 386732603 386733351 748 False 1201.000000 1201 95.594000 2 750 1 chr5A.!!$F2 748
11 TraesCS7A01G204000 chr5A 644241598 644242350 752 True 1197.000000 1197 95.358000 2 755 1 chr5A.!!$R1 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 812 0.108472 CCAGATCTGACAGCTCGCAA 60.108 55.000 24.62 0.0 0.00 4.85 F
1483 1514 0.389166 CTCTGAGGTGAGTGTTCGGC 60.389 60.000 0.00 0.0 0.00 5.54 F
1493 1524 0.882042 AGTGTTCGGCAAGCTGTGAG 60.882 55.000 0.18 0.0 0.00 3.51 F
1497 1528 0.966179 TTCGGCAAGCTGTGAGTAGA 59.034 50.000 0.18 0.0 0.00 2.59 F
3387 3483 0.176219 TTCACGTGTTGACTTCCCGT 59.824 50.000 16.51 0.0 32.26 5.28 F
3395 3491 0.537653 TTGACTTCCCGTGTCACACA 59.462 50.000 9.06 0.0 43.13 3.72 F
3863 3959 0.877213 CTGGCTTGGCAAACTTGTGC 60.877 55.000 0.00 0.0 44.14 4.57 F
4664 4787 4.080526 ACAGTCCTACAAGTCAAACAACCT 60.081 41.667 0.00 0.0 0.00 3.50 F
5761 5935 0.825010 CAGTGGGCCAAAGCAGTCTT 60.825 55.000 8.40 0.0 42.56 3.01 F
7623 7801 1.939974 ACAAGTCGCATCATACGCAT 58.060 45.000 0.00 0.0 0.00 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1720 1756 0.251916 TGGGGGCAGAAGTTATCACG 59.748 55.000 0.00 0.0 0.00 4.35 R
3385 3481 0.390340 CCCCTCTCATGTGTGACACG 60.390 60.000 11.51 0.0 37.14 4.49 R
3387 3483 1.556451 CATCCCCTCTCATGTGTGACA 59.444 52.381 0.00 0.0 0.00 3.58 R
3395 3491 2.915604 ACACTTCAACATCCCCTCTCAT 59.084 45.455 0.00 0.0 0.00 2.90 R
4228 4341 3.117738 CCCAGGCTCAAACTATCATCCTT 60.118 47.826 0.00 0.0 0.00 3.36 R
4641 4764 4.080526 AGGTTGTTTGACTTGTAGGACTGT 60.081 41.667 0.00 0.0 0.00 3.55 R
5284 5453 4.997395 TGAAGATTCACTAACTGGTTGCTC 59.003 41.667 0.00 0.0 31.01 4.26 R
6156 6330 4.712476 CATCTTAAAGCAGCCCTCTGTAT 58.288 43.478 0.00 0.0 42.29 2.29 R
7653 7831 0.677288 CAAGACACCCAGGTACGACA 59.323 55.000 0.00 0.0 0.00 4.35 R
8705 9657 0.108233 CTGCTCCTTCACTGCTCCTC 60.108 60.000 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.370281 AACACCATGTAGTGCGAGAG 57.630 50.000 2.39 0.00 41.67 3.20
62 63 0.679960 TGCGAGAGATCCAACGGAGA 60.680 55.000 0.00 0.00 34.05 3.71
109 110 2.704572 GCAAACCTCTGCAGAGTGTAT 58.295 47.619 35.47 19.53 42.17 2.29
582 585 4.939271 TCCGTTGTTATCGCATTAGATGA 58.061 39.130 0.00 0.00 32.39 2.92
699 702 2.027653 TGTGTCAGCATTACCGATCCAA 60.028 45.455 0.00 0.00 0.00 3.53
716 719 4.574674 TCCAAGGATGACACTAAAGCAT 57.425 40.909 0.00 0.00 0.00 3.79
718 721 6.061022 TCCAAGGATGACACTAAAGCATAA 57.939 37.500 0.00 0.00 0.00 1.90
743 746 4.561155 ACCATCTGAGGTCGGGTT 57.439 55.556 0.00 0.00 37.28 4.11
745 748 0.836400 ACCATCTGAGGTCGGGTTGT 60.836 55.000 0.00 0.00 37.28 3.32
751 754 0.682852 TGAGGTCGGGTTGTTACAGG 59.317 55.000 0.00 0.00 0.00 4.00
754 757 1.491754 AGGTCGGGTTGTTACAGGTTT 59.508 47.619 0.00 0.00 0.00 3.27
755 758 1.605232 GGTCGGGTTGTTACAGGTTTG 59.395 52.381 0.00 0.00 0.00 2.93
756 759 1.002142 GTCGGGTTGTTACAGGTTTGC 60.002 52.381 0.00 0.00 0.00 3.68
757 760 1.025812 CGGGTTGTTACAGGTTTGCA 58.974 50.000 0.00 0.00 0.00 4.08
758 761 1.001815 CGGGTTGTTACAGGTTTGCAG 60.002 52.381 0.00 0.00 0.00 4.41
759 762 2.303175 GGGTTGTTACAGGTTTGCAGA 58.697 47.619 0.00 0.00 0.00 4.26
760 763 2.691011 GGGTTGTTACAGGTTTGCAGAA 59.309 45.455 0.00 0.00 0.00 3.02
761 764 3.243401 GGGTTGTTACAGGTTTGCAGAAG 60.243 47.826 0.00 0.00 0.00 2.85
762 765 3.380320 GGTTGTTACAGGTTTGCAGAAGT 59.620 43.478 0.00 0.00 0.00 3.01
763 766 4.351192 GTTGTTACAGGTTTGCAGAAGTG 58.649 43.478 0.00 0.00 0.00 3.16
764 767 3.879998 TGTTACAGGTTTGCAGAAGTGA 58.120 40.909 0.00 0.00 0.00 3.41
765 768 3.876914 TGTTACAGGTTTGCAGAAGTGAG 59.123 43.478 0.00 0.00 0.00 3.51
766 769 2.717639 ACAGGTTTGCAGAAGTGAGT 57.282 45.000 0.00 0.00 0.00 3.41
767 770 2.565841 ACAGGTTTGCAGAAGTGAGTC 58.434 47.619 0.00 0.00 0.00 3.36
768 771 2.092968 ACAGGTTTGCAGAAGTGAGTCA 60.093 45.455 0.00 0.00 0.00 3.41
769 772 2.945008 CAGGTTTGCAGAAGTGAGTCAA 59.055 45.455 0.00 0.00 0.00 3.18
770 773 2.945668 AGGTTTGCAGAAGTGAGTCAAC 59.054 45.455 0.00 0.00 0.00 3.18
771 774 2.945668 GGTTTGCAGAAGTGAGTCAACT 59.054 45.455 0.00 0.00 0.00 3.16
772 775 3.002759 GGTTTGCAGAAGTGAGTCAACTC 59.997 47.826 3.13 3.13 43.15 3.01
773 776 3.827008 TTGCAGAAGTGAGTCAACTCT 57.173 42.857 11.23 0.00 43.25 3.24
774 777 3.827008 TGCAGAAGTGAGTCAACTCTT 57.173 42.857 11.23 0.00 43.25 2.85
775 778 3.722147 TGCAGAAGTGAGTCAACTCTTC 58.278 45.455 12.03 12.03 43.25 2.87
776 779 3.132824 TGCAGAAGTGAGTCAACTCTTCA 59.867 43.478 18.87 11.11 43.25 3.02
777 780 3.492756 GCAGAAGTGAGTCAACTCTTCAC 59.507 47.826 18.87 10.22 43.25 3.18
778 781 4.739137 GCAGAAGTGAGTCAACTCTTCACT 60.739 45.833 18.87 4.98 43.25 3.41
779 782 5.508153 GCAGAAGTGAGTCAACTCTTCACTA 60.508 44.000 18.87 0.00 43.25 2.74
780 783 5.918011 CAGAAGTGAGTCAACTCTTCACTAC 59.082 44.000 18.87 0.69 43.25 2.73
781 784 4.491234 AGTGAGTCAACTCTTCACTACG 57.509 45.455 11.23 0.00 43.25 3.51
782 785 4.135306 AGTGAGTCAACTCTTCACTACGA 58.865 43.478 11.23 0.00 43.25 3.43
783 786 4.214545 AGTGAGTCAACTCTTCACTACGAG 59.785 45.833 11.23 0.00 43.25 4.18
784 787 4.213694 GTGAGTCAACTCTTCACTACGAGA 59.786 45.833 11.23 0.00 43.25 4.04
785 788 5.004448 TGAGTCAACTCTTCACTACGAGAT 58.996 41.667 11.23 0.00 43.25 2.75
786 789 5.473846 TGAGTCAACTCTTCACTACGAGATT 59.526 40.000 11.23 0.00 43.25 2.40
787 790 5.704888 AGTCAACTCTTCACTACGAGATTG 58.295 41.667 0.00 0.00 0.00 2.67
788 791 4.324936 GTCAACTCTTCACTACGAGATTGC 59.675 45.833 0.00 0.00 0.00 3.56
789 792 4.218635 TCAACTCTTCACTACGAGATTGCT 59.781 41.667 0.00 0.00 0.00 3.91
790 793 4.364415 ACTCTTCACTACGAGATTGCTC 57.636 45.455 0.00 0.00 37.81 4.26
791 794 3.129638 ACTCTTCACTACGAGATTGCTCC 59.870 47.826 0.00 0.00 37.91 4.70
792 795 3.089284 TCTTCACTACGAGATTGCTCCA 58.911 45.455 0.00 0.00 37.91 3.86
793 796 3.129462 TCTTCACTACGAGATTGCTCCAG 59.871 47.826 0.00 0.00 37.91 3.86
794 797 2.723273 TCACTACGAGATTGCTCCAGA 58.277 47.619 0.00 0.00 37.91 3.86
795 798 3.291584 TCACTACGAGATTGCTCCAGAT 58.708 45.455 0.00 0.00 37.91 2.90
796 799 3.316588 TCACTACGAGATTGCTCCAGATC 59.683 47.826 0.00 0.00 37.91 2.75
797 800 3.317711 CACTACGAGATTGCTCCAGATCT 59.682 47.826 0.00 0.00 37.91 2.75
798 801 2.886862 ACGAGATTGCTCCAGATCTG 57.113 50.000 16.24 16.24 37.91 2.90
799 802 2.382882 ACGAGATTGCTCCAGATCTGA 58.617 47.619 24.62 9.26 37.91 3.27
800 803 2.100584 ACGAGATTGCTCCAGATCTGAC 59.899 50.000 24.62 13.08 37.91 3.51
801 804 2.100418 CGAGATTGCTCCAGATCTGACA 59.900 50.000 24.62 15.47 37.91 3.58
802 805 3.719924 GAGATTGCTCCAGATCTGACAG 58.280 50.000 24.62 18.65 35.01 3.51
803 806 2.158928 AGATTGCTCCAGATCTGACAGC 60.159 50.000 27.49 27.49 37.05 4.40
804 807 1.273759 TTGCTCCAGATCTGACAGCT 58.726 50.000 30.91 0.00 37.27 4.24
805 808 0.822811 TGCTCCAGATCTGACAGCTC 59.177 55.000 30.91 15.22 37.27 4.09
806 809 0.248990 GCTCCAGATCTGACAGCTCG 60.249 60.000 27.17 11.43 35.05 5.03
807 810 0.248990 CTCCAGATCTGACAGCTCGC 60.249 60.000 24.62 0.00 0.00 5.03
808 811 0.967380 TCCAGATCTGACAGCTCGCA 60.967 55.000 24.62 0.00 0.00 5.10
809 812 0.108472 CCAGATCTGACAGCTCGCAA 60.108 55.000 24.62 0.00 0.00 4.85
810 813 1.279152 CAGATCTGACAGCTCGCAAG 58.721 55.000 18.34 0.00 0.00 4.01
823 826 2.985847 GCAAGCCAGCGGGTCTTT 60.986 61.111 4.36 0.00 36.17 2.52
824 827 2.564721 GCAAGCCAGCGGGTCTTTT 61.565 57.895 4.36 0.00 36.17 2.27
825 828 1.241315 GCAAGCCAGCGGGTCTTTTA 61.241 55.000 4.36 0.00 36.17 1.52
826 829 0.804989 CAAGCCAGCGGGTCTTTTAG 59.195 55.000 4.36 0.00 36.17 1.85
827 830 0.690762 AAGCCAGCGGGTCTTTTAGA 59.309 50.000 4.36 0.00 36.17 2.10
828 831 0.690762 AGCCAGCGGGTCTTTTAGAA 59.309 50.000 4.36 0.00 36.17 2.10
829 832 1.073284 AGCCAGCGGGTCTTTTAGAAA 59.927 47.619 4.36 0.00 36.17 2.52
830 833 1.468914 GCCAGCGGGTCTTTTAGAAAG 59.531 52.381 4.36 0.00 36.17 2.62
831 834 2.874457 GCCAGCGGGTCTTTTAGAAAGA 60.874 50.000 4.36 0.00 36.17 2.52
832 835 3.610911 CCAGCGGGTCTTTTAGAAAGAT 58.389 45.455 6.42 0.00 0.00 2.40
833 836 4.010349 CCAGCGGGTCTTTTAGAAAGATT 58.990 43.478 6.42 0.00 0.00 2.40
834 837 4.095036 CCAGCGGGTCTTTTAGAAAGATTC 59.905 45.833 6.42 3.29 0.00 2.52
835 838 4.695455 CAGCGGGTCTTTTAGAAAGATTCA 59.305 41.667 6.42 0.00 0.00 2.57
836 839 5.355350 CAGCGGGTCTTTTAGAAAGATTCAT 59.645 40.000 6.42 0.00 0.00 2.57
837 840 6.538742 CAGCGGGTCTTTTAGAAAGATTCATA 59.461 38.462 6.42 0.00 0.00 2.15
838 841 6.763610 AGCGGGTCTTTTAGAAAGATTCATAG 59.236 38.462 6.42 0.00 0.00 2.23
839 842 6.017852 GCGGGTCTTTTAGAAAGATTCATAGG 60.018 42.308 6.42 0.00 0.00 2.57
840 843 6.017852 CGGGTCTTTTAGAAAGATTCATAGGC 60.018 42.308 6.42 0.00 0.00 3.93
841 844 6.263392 GGGTCTTTTAGAAAGATTCATAGGCC 59.737 42.308 0.00 0.00 0.00 5.19
842 845 6.017852 GGTCTTTTAGAAAGATTCATAGGCCG 60.018 42.308 0.00 0.00 0.00 6.13
843 846 6.761714 GTCTTTTAGAAAGATTCATAGGCCGA 59.238 38.462 0.00 0.00 0.00 5.54
844 847 6.761714 TCTTTTAGAAAGATTCATAGGCCGAC 59.238 38.462 0.00 0.00 0.00 4.79
845 848 5.607939 TTAGAAAGATTCATAGGCCGACA 57.392 39.130 0.00 0.00 0.00 4.35
846 849 4.487714 AGAAAGATTCATAGGCCGACAA 57.512 40.909 0.00 0.00 0.00 3.18
847 850 4.843728 AGAAAGATTCATAGGCCGACAAA 58.156 39.130 0.00 0.00 0.00 2.83
848 851 5.440610 AGAAAGATTCATAGGCCGACAAAT 58.559 37.500 0.00 0.00 0.00 2.32
849 852 5.888161 AGAAAGATTCATAGGCCGACAAATT 59.112 36.000 0.00 0.00 0.00 1.82
855 858 2.296073 TAGGCCGACAAATTTTGGGT 57.704 45.000 13.42 0.00 34.12 4.51
864 867 3.230134 ACAAATTTTGGGTCTAGCAGCA 58.770 40.909 13.42 0.00 34.12 4.41
923 928 2.178912 TAAAGTTTCAGCCCACGAGG 57.821 50.000 0.00 0.00 39.47 4.63
930 935 2.060383 CAGCCCACGAGGATCTCCA 61.060 63.158 0.00 0.00 38.24 3.86
931 936 2.060980 AGCCCACGAGGATCTCCAC 61.061 63.158 0.00 0.00 38.24 4.02
932 937 2.359169 GCCCACGAGGATCTCCACA 61.359 63.158 0.00 0.00 38.24 4.17
933 938 1.517832 CCCACGAGGATCTCCACAC 59.482 63.158 0.00 0.00 38.24 3.82
934 939 1.139734 CCACGAGGATCTCCACACG 59.860 63.158 0.00 4.33 38.89 4.49
959 988 3.381045 GGAAAACGGGAAGCTCAAAAAG 58.619 45.455 0.00 0.00 0.00 2.27
989 1018 2.125512 CACTAGTGGGGAGCACGC 60.126 66.667 15.49 0.00 0.00 5.34
1034 1064 4.798682 TCGCCTTCCCTCTCCCCC 62.799 72.222 0.00 0.00 0.00 5.40
1464 1495 0.464373 TCCGCTCCTGCCAAATCATC 60.464 55.000 0.00 0.00 35.36 2.92
1474 1505 2.573009 TGCCAAATCATCTCTGAGGTGA 59.427 45.455 21.91 21.91 34.12 4.02
1476 1507 3.370315 GCCAAATCATCTCTGAGGTGAGT 60.370 47.826 23.59 19.36 34.12 3.41
1477 1508 4.190001 CCAAATCATCTCTGAGGTGAGTG 58.810 47.826 23.59 21.50 34.12 3.51
1478 1509 4.323333 CCAAATCATCTCTGAGGTGAGTGT 60.323 45.833 23.59 10.47 34.12 3.55
1479 1510 5.243981 CAAATCATCTCTGAGGTGAGTGTT 58.756 41.667 23.59 15.08 34.12 3.32
1480 1511 4.734398 ATCATCTCTGAGGTGAGTGTTC 57.266 45.455 23.59 0.00 34.12 3.18
1482 1513 1.248486 TCTCTGAGGTGAGTGTTCGG 58.752 55.000 4.59 0.00 35.68 4.30
1483 1514 0.389166 CTCTGAGGTGAGTGTTCGGC 60.389 60.000 0.00 0.00 0.00 5.54
1487 1518 1.569479 GAGGTGAGTGTTCGGCAAGC 61.569 60.000 0.00 0.00 0.00 4.01
1488 1519 1.598130 GGTGAGTGTTCGGCAAGCT 60.598 57.895 0.00 0.00 0.00 3.74
1490 1521 1.146041 TGAGTGTTCGGCAAGCTGT 59.854 52.632 0.18 0.00 0.00 4.40
1493 1524 0.882042 AGTGTTCGGCAAGCTGTGAG 60.882 55.000 0.18 0.00 0.00 3.51
1494 1525 1.146041 TGTTCGGCAAGCTGTGAGT 59.854 52.632 0.18 0.00 0.00 3.41
1497 1528 0.966179 TTCGGCAAGCTGTGAGTAGA 59.034 50.000 0.18 0.00 0.00 2.59
1500 1531 2.028112 TCGGCAAGCTGTGAGTAGATTT 60.028 45.455 0.18 0.00 0.00 2.17
1504 1535 4.502962 GCAAGCTGTGAGTAGATTTCTCT 58.497 43.478 0.00 0.00 35.39 3.10
1505 1536 4.566360 GCAAGCTGTGAGTAGATTTCTCTC 59.434 45.833 0.00 0.00 32.66 3.20
1507 1538 4.348486 AGCTGTGAGTAGATTTCTCTCCA 58.652 43.478 0.00 0.00 32.66 3.86
1508 1539 4.402155 AGCTGTGAGTAGATTTCTCTCCAG 59.598 45.833 0.00 0.00 36.12 3.86
1510 1541 5.337169 GCTGTGAGTAGATTTCTCTCCAGTT 60.337 44.000 15.90 0.00 35.81 3.16
1511 1542 6.030548 TGTGAGTAGATTTCTCTCCAGTTG 57.969 41.667 0.00 0.00 32.66 3.16
1512 1543 5.775195 TGTGAGTAGATTTCTCTCCAGTTGA 59.225 40.000 0.00 0.00 32.66 3.18
1516 1547 8.690884 TGAGTAGATTTCTCTCCAGTTGATAAG 58.309 37.037 0.00 0.00 32.66 1.73
1530 1561 8.871125 TCCAGTTGATAAGAAGAAGAGTACTTT 58.129 33.333 0.00 0.00 36.39 2.66
1580 1611 7.515059 CGTTTTGCCTAACTTCAGTTTTCATTG 60.515 37.037 0.00 0.00 39.31 2.82
1602 1634 6.560003 TGGAGATTTGAGGAGCTTGTATAA 57.440 37.500 0.00 0.00 0.00 0.98
1654 1687 4.162509 GTCCATTCTGTACCTCTTAGCCTT 59.837 45.833 0.00 0.00 0.00 4.35
1681 1714 6.039941 ACCTAAGTTCGATCTGGTTATCTCAG 59.960 42.308 0.00 0.00 0.00 3.35
1684 1717 7.406031 AAGTTCGATCTGGTTATCTCAGTTA 57.594 36.000 0.00 0.00 34.15 2.24
1685 1718 7.033530 AGTTCGATCTGGTTATCTCAGTTAG 57.966 40.000 0.00 0.00 34.15 2.34
1686 1719 6.603997 AGTTCGATCTGGTTATCTCAGTTAGT 59.396 38.462 0.00 0.00 34.15 2.24
1688 1721 7.028926 TCGATCTGGTTATCTCAGTTAGTTC 57.971 40.000 0.00 0.00 34.15 3.01
1690 1723 6.183360 CGATCTGGTTATCTCAGTTAGTTCCA 60.183 42.308 0.00 0.00 34.15 3.53
1703 1739 6.421801 TCAGTTAGTTCCAGTAAAACGTTAGC 59.578 38.462 0.00 0.00 0.00 3.09
1720 1756 6.738114 ACGTTAGCTAAAAGTTAAAAACCCC 58.262 36.000 7.99 0.00 0.00 4.95
1727 1763 7.231115 AGCTAAAAGTTAAAAACCCCGTGATAA 59.769 33.333 0.00 0.00 0.00 1.75
1730 1766 6.964807 AAGTTAAAAACCCCGTGATAACTT 57.035 33.333 0.00 0.00 38.23 2.66
1733 1769 6.206048 AGTTAAAAACCCCGTGATAACTTCTG 59.794 38.462 0.00 0.00 31.48 3.02
1761 1797 2.357637 TGCAGCTTTGGTTACAGTGAAC 59.642 45.455 0.00 0.00 0.00 3.18
1777 1813 5.474876 ACAGTGAACTGATCCATTTCTTTCC 59.525 40.000 17.11 0.00 46.59 3.13
1793 1829 3.004944 TCTTTCCGCGTTTTAATTTGCCT 59.995 39.130 4.92 0.00 0.00 4.75
1824 1879 7.540474 TTCTTAGTTCAGGTAGTGTCAAGAT 57.460 36.000 0.00 0.00 0.00 2.40
1842 1897 5.929992 TCAAGATTACCACGTTCACCTAAAG 59.070 40.000 0.00 0.00 0.00 1.85
1958 2013 2.437651 TGATGCCATGAAGATTCGGGTA 59.562 45.455 0.00 1.95 0.00 3.69
1967 2022 5.531122 TGAAGATTCGGGTACAGGATAAG 57.469 43.478 0.00 0.00 0.00 1.73
1982 2037 3.077359 GGATAAGATCCCAGCAATTCGG 58.923 50.000 0.00 0.00 43.88 4.30
1988 2043 1.710816 TCCCAGCAATTCGGGTTTTT 58.289 45.000 4.43 0.00 43.57 1.94
2102 2157 4.565962 GCTGTATGTCAGATCAACTCAGTG 59.434 45.833 0.00 0.00 46.27 3.66
2163 2218 4.588106 TGATGGAGGCTTTGTTTGATTTGA 59.412 37.500 0.00 0.00 0.00 2.69
2337 2392 3.569701 TGAGCAATTCTTTCCACTGGAAC 59.430 43.478 10.25 0.00 41.87 3.62
2381 2436 4.949238 TGCCTACATATGAAATGCACAACT 59.051 37.500 10.38 0.00 0.00 3.16
2396 2451 2.955660 CACAACTGGTTACCAACACCAT 59.044 45.455 5.31 0.00 43.60 3.55
2491 2546 7.776107 TCAGATAGGTCTACATCTGTGAAAAG 58.224 38.462 10.45 0.00 45.50 2.27
2552 2607 2.756760 GCATTGTGGTGGAGATGTCATT 59.243 45.455 0.00 0.00 0.00 2.57
2672 2727 3.623510 GGCAAACTATCAGGCAGTACTTC 59.376 47.826 0.00 0.00 0.00 3.01
2713 2768 4.038642 TGCTGGTAAATCTGAACAAAACCC 59.961 41.667 0.00 0.00 0.00 4.11
2844 2899 9.495572 AGTAAACCTGAAACAAAACAATGAAAA 57.504 25.926 0.00 0.00 0.00 2.29
2875 2930 5.158494 CCAACGGCTAAACTGTATTTTTCC 58.842 41.667 0.00 0.00 36.64 3.13
2911 2966 6.038936 TGACTTTCTACTACAGCGTGCATATA 59.961 38.462 0.00 0.00 0.00 0.86
2919 2975 9.574458 CTACTACAGCGTGCATATAAATTATCT 57.426 33.333 0.00 0.00 0.00 1.98
2998 3054 8.923683 CATCATCTACACTATATTTGTGCAGAG 58.076 37.037 13.38 7.76 40.02 3.35
3025 3081 4.842531 TTCCAGTATCAAGCTCATGGAA 57.157 40.909 9.06 9.06 42.84 3.53
3223 3283 5.453648 TGCGTTTTGTTTGTATATGTGGAC 58.546 37.500 0.00 0.00 0.00 4.02
3234 3294 2.393630 TATGTGGACTACCTAGCCCC 57.606 55.000 0.00 0.00 37.04 5.80
3327 3423 4.873746 CTTGAGTTCAAGTCCCACTCTA 57.126 45.455 12.61 0.00 46.11 2.43
3334 3430 2.832129 TCAAGTCCCACTCTATGTCCAC 59.168 50.000 0.00 0.00 0.00 4.02
3385 3481 3.678548 GTCTATTCACGTGTTGACTTCCC 59.321 47.826 16.51 0.00 32.26 3.97
3387 3483 0.176219 TTCACGTGTTGACTTCCCGT 59.824 50.000 16.51 0.00 32.26 5.28
3395 3491 0.537653 TTGACTTCCCGTGTCACACA 59.462 50.000 9.06 0.00 43.13 3.72
3505 3601 5.689961 GCTTAACACGTTTCATTTCATTGGT 59.310 36.000 0.00 0.00 0.00 3.67
3573 3669 1.229625 AGGACATCCCAGTGCCTGA 60.230 57.895 4.00 0.00 37.41 3.86
3625 3721 3.594134 CTCTAGCCCAGAGTCTTGTTTG 58.406 50.000 5.03 0.00 45.10 2.93
3630 3726 1.528129 CCAGAGTCTTGTTTGCTCCC 58.472 55.000 0.00 0.00 0.00 4.30
3643 3739 1.225373 TGCTCCCTAATTCTGGCCAT 58.775 50.000 5.51 0.00 0.00 4.40
3654 3750 5.587388 AATTCTGGCCATCATTTACACAG 57.413 39.130 5.51 0.00 0.00 3.66
3671 3767 1.017177 CAGCCATTGTGCCAATGTGC 61.017 55.000 19.84 20.22 0.00 4.57
3694 3790 4.165372 CCATACTTTTCCTACCTTAGGGCA 59.835 45.833 2.32 0.00 46.24 5.36
3863 3959 0.877213 CTGGCTTGGCAAACTTGTGC 60.877 55.000 0.00 0.00 44.14 4.57
3980 4076 4.766375 TGTAGTGAACTAAATAGCCCTGC 58.234 43.478 0.00 0.00 0.00 4.85
4069 4166 8.539770 TTAGCTTTGTCTCAGAAATACTTCAG 57.460 34.615 0.00 0.00 33.64 3.02
4219 4332 7.893833 ACCAAAGCTATAAACTGGAAAATACCT 59.106 33.333 0.00 0.00 0.00 3.08
4442 4565 5.086104 ACACACTGGATGGAGTAACATAC 57.914 43.478 0.00 0.00 32.11 2.39
4660 4783 5.790593 GGATACAGTCCTACAAGTCAAACA 58.209 41.667 0.00 0.00 44.16 2.83
4661 4784 6.228258 GGATACAGTCCTACAAGTCAAACAA 58.772 40.000 0.00 0.00 44.16 2.83
4662 4785 6.147328 GGATACAGTCCTACAAGTCAAACAAC 59.853 42.308 0.00 0.00 44.16 3.32
4663 4786 4.196971 ACAGTCCTACAAGTCAAACAACC 58.803 43.478 0.00 0.00 0.00 3.77
4664 4787 4.080526 ACAGTCCTACAAGTCAAACAACCT 60.081 41.667 0.00 0.00 0.00 3.50
4665 4788 5.129815 ACAGTCCTACAAGTCAAACAACCTA 59.870 40.000 0.00 0.00 0.00 3.08
4666 4789 5.465724 CAGTCCTACAAGTCAAACAACCTAC 59.534 44.000 0.00 0.00 0.00 3.18
4739 4895 7.734942 TCCTTTGAATCAAATAGGCACTTTTT 58.265 30.769 9.02 0.00 40.06 1.94
5074 5243 6.619801 AGTGAAACACTGAACAAGATTACC 57.380 37.500 3.54 0.00 43.63 2.85
5284 5453 7.912250 GCATGAATACTGATTGTACTTTTCAGG 59.088 37.037 18.23 7.63 40.92 3.86
5286 5455 8.777865 TGAATACTGATTGTACTTTTCAGGAG 57.222 34.615 18.23 2.71 40.92 3.69
5333 5502 1.073548 GGCTTAACCGGTCCAACCA 59.926 57.895 8.04 0.00 38.47 3.67
5524 5694 7.876068 AGCATTTTCTCACATGTGAAAATTGAT 59.124 29.630 31.15 27.75 46.91 2.57
5525 5695 8.500773 GCATTTTCTCACATGTGAAAATTGATT 58.499 29.630 31.15 17.58 46.91 2.57
5618 5792 4.636206 GGAATGCTTGACTTTTCCGATAGT 59.364 41.667 0.00 0.00 0.00 2.12
5761 5935 0.825010 CAGTGGGCCAAAGCAGTCTT 60.825 55.000 8.40 0.00 42.56 3.01
6036 6210 7.454066 AGTCCCCTAGGTGTATAGCTTTATAAC 59.546 40.741 8.29 0.00 35.90 1.89
6156 6330 3.446799 GCAAAGCAGAAACATGTTGACA 58.553 40.909 12.82 0.00 0.00 3.58
6389 6563 2.037772 TGAGAAGACTCAGTTTGCTCCC 59.962 50.000 0.71 0.00 46.55 4.30
6511 6685 5.612688 AGGGTGATAACCATGATAATGTCCT 59.387 40.000 0.36 0.00 0.00 3.85
6548 6722 7.148255 GGTGAAGGTTTTGCAAAAATTCTTCTT 60.148 33.333 33.73 25.50 35.34 2.52
6840 7015 8.122472 TCCAGGATATTCTTTTGAAAAAGGAC 57.878 34.615 13.99 0.00 44.22 3.85
6870 7045 9.628500 AAACTAAAAGTACTGACAATCTTTCCT 57.372 29.630 0.00 0.00 31.12 3.36
7070 7245 2.093235 AGAGCAAGCTTGTATGAGTCCC 60.093 50.000 26.55 7.50 0.00 4.46
7326 7502 5.068234 ACTGACATCAAATGCTTGGAATG 57.932 39.130 0.00 0.00 33.01 2.67
7366 7542 2.734673 GACAAGAAGAGCGCGCCTG 61.735 63.158 30.33 17.28 0.00 4.85
7608 7784 4.024048 GCCATATTCGGTATGTCCAACAAG 60.024 45.833 7.60 0.00 38.83 3.16
7623 7801 1.939974 ACAAGTCGCATCATACGCAT 58.060 45.000 0.00 0.00 0.00 4.73
7647 7825 4.356405 ACAGATGTTCACATTCCTGACA 57.644 40.909 13.07 0.00 36.57 3.58
7653 7831 5.850557 TGTTCACATTCCTGACAATTTGT 57.149 34.783 0.63 0.63 0.00 2.83
7701 7883 1.004745 CAACTAGGATTGGCTGGTGGT 59.995 52.381 0.00 0.00 0.00 4.16
7870 8052 1.194781 AACATCGGTGAGCCAGGTCT 61.195 55.000 0.65 0.00 34.09 3.85
7962 8144 3.006752 AGTCTTCTGTGAAGCCTTCTCTG 59.993 47.826 5.96 6.54 0.00 3.35
8025 8207 1.482593 ACAACTGATGAGGATCCGTCC 59.517 52.381 5.98 0.27 45.45 4.79
8171 8353 8.082242 GCCACTATGTATTGTTTCTTTTGAACT 58.918 33.333 0.00 0.00 38.30 3.01
8284 8466 9.755804 CAATGAGATTGTATAAAGAGCTCTACA 57.244 33.333 18.59 14.84 35.57 2.74
8320 8502 5.997746 TGCTCTTTTACACTATTGCTTGTCT 59.002 36.000 0.00 0.00 0.00 3.41
8321 8503 6.486657 TGCTCTTTTACACTATTGCTTGTCTT 59.513 34.615 0.00 0.00 0.00 3.01
8323 8505 8.504005 GCTCTTTTACACTATTGCTTGTCTTTA 58.496 33.333 0.00 0.00 0.00 1.85
8385 8580 8.617809 TGTCTACAATAAAGTTTGACAAGAACC 58.382 33.333 0.00 0.00 33.82 3.62
8399 8594 6.464222 TGACAAGAACCACTCAACCTTATAG 58.536 40.000 0.00 0.00 0.00 1.31
8405 8600 7.690256 AGAACCACTCAACCTTATAGTCATTT 58.310 34.615 0.00 0.00 0.00 2.32
8445 8641 2.971598 CGGGCAGTCATCCAACCCT 61.972 63.158 0.00 0.00 38.50 4.34
8448 8644 0.329596 GGCAGTCATCCAACCCTTCT 59.670 55.000 0.00 0.00 0.00 2.85
8450 8646 2.633488 GCAGTCATCCAACCCTTCTAC 58.367 52.381 0.00 0.00 0.00 2.59
8451 8647 2.681097 GCAGTCATCCAACCCTTCTACC 60.681 54.545 0.00 0.00 0.00 3.18
8452 8648 2.571653 CAGTCATCCAACCCTTCTACCA 59.428 50.000 0.00 0.00 0.00 3.25
8453 8649 2.572104 AGTCATCCAACCCTTCTACCAC 59.428 50.000 0.00 0.00 0.00 4.16
8454 8650 2.304761 GTCATCCAACCCTTCTACCACA 59.695 50.000 0.00 0.00 0.00 4.17
8531 8752 4.278170 CCTCCAAATGCTCAACACTGTAAA 59.722 41.667 0.00 0.00 0.00 2.01
8564 9457 2.033832 GCAAAATGTGCGTCAAAGTTGG 60.034 45.455 0.00 0.00 45.10 3.77
8572 9465 2.076863 GCGTCAAAGTTGGTCTATGCT 58.923 47.619 0.00 0.00 0.00 3.79
8584 9477 2.037251 GGTCTATGCTATTTCGGCTCCA 59.963 50.000 0.00 0.00 0.00 3.86
8591 9512 2.609916 GCTATTTCGGCTCCAAACTCTC 59.390 50.000 0.00 0.00 0.00 3.20
8592 9513 2.859165 ATTTCGGCTCCAAACTCTCA 57.141 45.000 0.00 0.00 0.00 3.27
8593 9514 2.631160 TTTCGGCTCCAAACTCTCAA 57.369 45.000 0.00 0.00 0.00 3.02
8594 9515 2.631160 TTCGGCTCCAAACTCTCAAA 57.369 45.000 0.00 0.00 0.00 2.69
8595 9516 2.631160 TCGGCTCCAAACTCTCAAAA 57.369 45.000 0.00 0.00 0.00 2.44
8596 9517 2.925724 TCGGCTCCAAACTCTCAAAAA 58.074 42.857 0.00 0.00 0.00 1.94
8597 9518 3.486383 TCGGCTCCAAACTCTCAAAAAT 58.514 40.909 0.00 0.00 0.00 1.82
8598 9519 3.502211 TCGGCTCCAAACTCTCAAAAATC 59.498 43.478 0.00 0.00 0.00 2.17
8600 9521 4.695455 CGGCTCCAAACTCTCAAAAATCTA 59.305 41.667 0.00 0.00 0.00 1.98
8601 9522 5.390991 CGGCTCCAAACTCTCAAAAATCTAC 60.391 44.000 0.00 0.00 0.00 2.59
8602 9523 5.106118 GGCTCCAAACTCTCAAAAATCTACC 60.106 44.000 0.00 0.00 0.00 3.18
8603 9524 5.707764 GCTCCAAACTCTCAAAAATCTACCT 59.292 40.000 0.00 0.00 0.00 3.08
8607 9528 6.490040 CCAAACTCTCAAAAATCTACCTCCAA 59.510 38.462 0.00 0.00 0.00 3.53
8608 9529 7.014230 CCAAACTCTCAAAAATCTACCTCCAAA 59.986 37.037 0.00 0.00 0.00 3.28
8615 9567 9.208022 CTCAAAAATCTACCTCCAAAATTTTCC 57.792 33.333 0.00 0.00 31.17 3.13
8620 9572 5.502079 TCTACCTCCAAAATTTTCCGCATA 58.498 37.500 0.00 0.00 0.00 3.14
8640 9592 1.774254 ACTCAATGACAAGTGGGACCA 59.226 47.619 0.00 0.00 0.00 4.02
8657 9609 3.254903 GGACCAACCCTACATTTGACAAC 59.745 47.826 0.00 0.00 0.00 3.32
8664 9616 3.502211 CCCTACATTTGACAACACCTCAC 59.498 47.826 0.00 0.00 0.00 3.51
8672 9624 2.170397 TGACAACACCTCACTCATGTGT 59.830 45.455 0.00 0.00 44.63 3.72
8675 9627 1.597742 ACACCTCACTCATGTGTTGC 58.402 50.000 0.00 0.00 40.12 4.17
8679 9631 1.915614 CTCACTCATGTGTTGCGGGC 61.916 60.000 0.00 0.00 44.14 6.13
8680 9632 3.049674 ACTCATGTGTTGCGGGCG 61.050 61.111 0.00 0.00 0.00 6.13
8683 9635 3.669344 CATGTGTTGCGGGCGGTT 61.669 61.111 0.00 0.00 0.00 4.44
8713 9665 3.123620 GGCGCACTTGAGGAGCAG 61.124 66.667 10.83 0.00 0.00 4.24
8715 9667 2.675056 GCGCACTTGAGGAGCAGTG 61.675 63.158 0.30 0.00 35.57 3.66
8717 9669 0.601046 CGCACTTGAGGAGCAGTGAA 60.601 55.000 3.94 0.00 34.50 3.18
8718 9670 1.155042 GCACTTGAGGAGCAGTGAAG 58.845 55.000 3.94 0.00 34.50 3.02
8722 9674 0.322975 TTGAGGAGCAGTGAAGGAGC 59.677 55.000 0.00 0.00 0.00 4.70
8723 9675 0.833409 TGAGGAGCAGTGAAGGAGCA 60.833 55.000 0.00 0.00 0.00 4.26
8725 9677 0.835543 AGGAGCAGTGAAGGAGCAGT 60.836 55.000 0.00 0.00 0.00 4.40
8726 9678 0.673022 GGAGCAGTGAAGGAGCAGTG 60.673 60.000 0.00 0.00 41.15 3.66
8728 9680 0.250209 AGCAGTGAAGGAGCAGTGTG 60.250 55.000 0.00 0.00 40.50 3.82
8729 9681 0.533755 GCAGTGAAGGAGCAGTGTGT 60.534 55.000 0.00 0.00 40.50 3.72
8731 9683 0.032678 AGTGAAGGAGCAGTGTGTCG 59.967 55.000 0.00 0.00 0.00 4.35
8733 9685 1.374758 GAAGGAGCAGTGTGTCGGG 60.375 63.158 0.00 0.00 0.00 5.14
8735 9687 3.311110 GGAGCAGTGTGTCGGGGA 61.311 66.667 0.00 0.00 0.00 4.81
8763 9751 2.032071 GCAGTGGCGGTACAGGTT 59.968 61.111 0.00 0.00 0.00 3.50
8764 9752 1.599797 GCAGTGGCGGTACAGGTTT 60.600 57.895 0.00 0.00 0.00 3.27
8768 9756 0.320946 GTGGCGGTACAGGTTTAGCA 60.321 55.000 0.00 0.00 0.00 3.49
8788 9776 4.129737 GCCAGCGAGCAGTACCGA 62.130 66.667 0.00 0.00 0.00 4.69
8789 9777 2.202623 CCAGCGAGCAGTACCGAC 60.203 66.667 0.00 0.00 0.00 4.79
8790 9778 2.202623 CAGCGAGCAGTACCGACC 60.203 66.667 0.00 0.00 0.00 4.79
8791 9779 2.361357 AGCGAGCAGTACCGACCT 60.361 61.111 0.00 0.00 0.00 3.85
8792 9780 2.202623 GCGAGCAGTACCGACCTG 60.203 66.667 0.00 0.00 0.00 4.00
8794 9782 1.880894 CGAGCAGTACCGACCTGAA 59.119 57.895 0.00 0.00 31.38 3.02
8795 9783 0.179161 CGAGCAGTACCGACCTGAAG 60.179 60.000 0.00 0.00 31.38 3.02
8796 9784 0.173708 GAGCAGTACCGACCTGAAGG 59.826 60.000 0.00 0.00 42.17 3.46
8811 9799 5.365021 CCTGAAGGTTATGATGAACTCCT 57.635 43.478 0.00 0.00 0.00 3.69
8812 9800 5.363939 CCTGAAGGTTATGATGAACTCCTC 58.636 45.833 0.00 0.00 0.00 3.71
8821 10190 4.008074 TGATGAACTCCTCCAAACAGAC 57.992 45.455 0.00 0.00 0.00 3.51
8838 10207 1.432270 GACTGCCTACGCTGGATTGC 61.432 60.000 0.00 0.00 38.21 3.56
8847 10223 0.383231 CGCTGGATTGCATTTCCCTC 59.617 55.000 12.36 4.84 31.87 4.30
8875 10251 9.500785 TCTTTCAGAAGGAAACAAAATTTTTGT 57.499 25.926 19.31 19.31 40.51 2.83
8876 10252 9.759259 CTTTCAGAAGGAAACAAAATTTTTGTC 57.241 29.630 23.74 14.23 40.51 3.18
8877 10253 9.500785 TTTCAGAAGGAAACAAAATTTTTGTCT 57.499 25.926 23.74 13.43 40.51 3.41
8878 10254 9.500785 TTCAGAAGGAAACAAAATTTTTGTCTT 57.499 25.926 23.74 21.27 30.98 3.01
8960 10350 2.428890 ACCGAAAACAAATGGTTGCTCA 59.571 40.909 0.00 0.00 40.35 4.26
9146 10536 2.299326 ATTCAAAGCCTCAGCCAAGT 57.701 45.000 0.00 0.00 41.25 3.16
9149 10539 1.143684 TCAAAGCCTCAGCCAAGTTCT 59.856 47.619 0.00 0.00 41.25 3.01
9247 10637 0.109532 TTGGTCAGCCGATTTCACCA 59.890 50.000 0.00 0.00 37.67 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.116238 GACTCAATCTTCTCCGTTGGATC 58.884 47.826 0.00 0.00 0.00 3.36
223 224 6.502138 TCCTCCAAGTCAATCCCAATTAAAT 58.498 36.000 0.00 0.00 0.00 1.40
239 240 4.292186 TCATTGAGAAGGTTCCTCCAAG 57.708 45.455 0.00 0.00 39.02 3.61
303 305 4.923281 CGAAAAGCCAATTTTTCCCTACAG 59.077 41.667 5.85 0.00 41.24 2.74
699 702 6.951971 AGTCTTTATGCTTTAGTGTCATCCT 58.048 36.000 0.00 0.00 0.00 3.24
743 746 3.876914 CTCACTTCTGCAAACCTGTAACA 59.123 43.478 0.00 0.00 0.00 2.41
745 748 4.127171 GACTCACTTCTGCAAACCTGTAA 58.873 43.478 0.00 0.00 0.00 2.41
751 754 3.873952 AGAGTTGACTCACTTCTGCAAAC 59.126 43.478 13.20 0.00 45.21 2.93
754 757 3.132824 TGAAGAGTTGACTCACTTCTGCA 59.867 43.478 13.20 3.59 45.21 4.41
755 758 3.492756 GTGAAGAGTTGACTCACTTCTGC 59.507 47.826 13.20 4.18 45.21 4.26
756 759 4.942852 AGTGAAGAGTTGACTCACTTCTG 58.057 43.478 13.20 0.00 45.21 3.02
757 760 5.278071 CGTAGTGAAGAGTTGACTCACTTCT 60.278 44.000 13.20 8.41 45.21 2.85
758 761 4.912766 CGTAGTGAAGAGTTGACTCACTTC 59.087 45.833 13.20 9.34 45.21 3.01
759 762 4.579340 TCGTAGTGAAGAGTTGACTCACTT 59.421 41.667 13.20 0.18 45.21 3.16
760 763 4.135306 TCGTAGTGAAGAGTTGACTCACT 58.865 43.478 13.20 10.74 45.21 3.41
761 764 4.213694 TCTCGTAGTGAAGAGTTGACTCAC 59.786 45.833 13.20 7.45 45.21 3.51
762 765 4.386711 TCTCGTAGTGAAGAGTTGACTCA 58.613 43.478 13.20 0.00 45.21 3.41
763 766 5.554822 ATCTCGTAGTGAAGAGTTGACTC 57.445 43.478 2.93 2.93 43.17 3.36
764 767 5.704888 CAATCTCGTAGTGAAGAGTTGACT 58.295 41.667 0.00 0.00 36.03 3.41
765 768 4.324936 GCAATCTCGTAGTGAAGAGTTGAC 59.675 45.833 9.93 0.00 36.03 3.18
766 769 4.218635 AGCAATCTCGTAGTGAAGAGTTGA 59.781 41.667 9.93 0.00 36.03 3.18
767 770 4.489810 AGCAATCTCGTAGTGAAGAGTTG 58.510 43.478 0.00 0.00 36.03 3.16
768 771 4.381079 GGAGCAATCTCGTAGTGAAGAGTT 60.381 45.833 0.00 0.00 40.26 3.01
769 772 3.129638 GGAGCAATCTCGTAGTGAAGAGT 59.870 47.826 0.00 0.00 40.26 3.24
770 773 3.129462 TGGAGCAATCTCGTAGTGAAGAG 59.871 47.826 0.00 0.00 40.26 2.85
771 774 3.089284 TGGAGCAATCTCGTAGTGAAGA 58.911 45.455 0.00 0.00 40.26 2.87
772 775 3.129462 TCTGGAGCAATCTCGTAGTGAAG 59.871 47.826 0.00 0.00 40.26 3.02
773 776 3.089284 TCTGGAGCAATCTCGTAGTGAA 58.911 45.455 0.00 0.00 40.26 3.18
774 777 2.723273 TCTGGAGCAATCTCGTAGTGA 58.277 47.619 0.00 0.00 40.26 3.41
775 778 3.317711 AGATCTGGAGCAATCTCGTAGTG 59.682 47.826 0.00 0.00 40.26 2.74
776 779 3.317711 CAGATCTGGAGCAATCTCGTAGT 59.682 47.826 15.38 0.00 40.26 2.73
777 780 3.567585 TCAGATCTGGAGCAATCTCGTAG 59.432 47.826 22.42 0.00 40.26 3.51
778 781 3.316588 GTCAGATCTGGAGCAATCTCGTA 59.683 47.826 22.42 0.00 40.26 3.43
779 782 2.100584 GTCAGATCTGGAGCAATCTCGT 59.899 50.000 22.42 0.00 40.26 4.18
780 783 2.100418 TGTCAGATCTGGAGCAATCTCG 59.900 50.000 22.42 0.00 40.26 4.04
781 784 3.719924 CTGTCAGATCTGGAGCAATCTC 58.280 50.000 22.42 3.62 38.62 2.75
782 785 2.158928 GCTGTCAGATCTGGAGCAATCT 60.159 50.000 28.71 0.00 36.84 2.40
783 786 2.158928 AGCTGTCAGATCTGGAGCAATC 60.159 50.000 32.07 19.19 38.27 2.67
784 787 1.838715 AGCTGTCAGATCTGGAGCAAT 59.161 47.619 32.07 19.41 38.27 3.56
785 788 1.206610 GAGCTGTCAGATCTGGAGCAA 59.793 52.381 32.07 12.18 38.27 3.91
786 789 0.822811 GAGCTGTCAGATCTGGAGCA 59.177 55.000 32.07 23.02 38.27 4.26
787 790 0.248990 CGAGCTGTCAGATCTGGAGC 60.249 60.000 27.44 27.44 37.00 4.70
788 791 0.248990 GCGAGCTGTCAGATCTGGAG 60.249 60.000 22.42 18.11 0.00 3.86
789 792 0.967380 TGCGAGCTGTCAGATCTGGA 60.967 55.000 22.42 8.83 0.00 3.86
790 793 0.108472 TTGCGAGCTGTCAGATCTGG 60.108 55.000 22.42 7.93 0.00 3.86
791 794 1.279152 CTTGCGAGCTGTCAGATCTG 58.721 55.000 17.07 17.07 0.00 2.90
792 795 0.459934 GCTTGCGAGCTGTCAGATCT 60.460 55.000 19.25 0.00 45.65 2.75
793 796 2.005220 GCTTGCGAGCTGTCAGATC 58.995 57.895 19.25 8.09 45.65 2.75
794 797 4.198625 GCTTGCGAGCTGTCAGAT 57.801 55.556 19.25 0.00 45.65 2.90
806 809 1.241315 TAAAAGACCCGCTGGCTTGC 61.241 55.000 0.00 0.00 31.22 4.01
807 810 0.804989 CTAAAAGACCCGCTGGCTTG 59.195 55.000 0.00 0.00 31.22 4.01
808 811 0.690762 TCTAAAAGACCCGCTGGCTT 59.309 50.000 0.00 0.00 33.59 4.35
809 812 0.690762 TTCTAAAAGACCCGCTGGCT 59.309 50.000 0.00 0.00 33.59 4.75
810 813 1.468914 CTTTCTAAAAGACCCGCTGGC 59.531 52.381 0.00 0.00 33.59 4.85
811 814 3.053831 TCTTTCTAAAAGACCCGCTGG 57.946 47.619 0.00 0.00 37.80 4.85
812 815 4.695455 TGAATCTTTCTAAAAGACCCGCTG 59.305 41.667 4.36 0.00 0.00 5.18
813 816 4.906618 TGAATCTTTCTAAAAGACCCGCT 58.093 39.130 4.36 0.00 0.00 5.52
814 817 5.819825 ATGAATCTTTCTAAAAGACCCGC 57.180 39.130 4.36 0.00 0.00 6.13
815 818 6.017852 GCCTATGAATCTTTCTAAAAGACCCG 60.018 42.308 4.36 0.00 0.00 5.28
816 819 6.263392 GGCCTATGAATCTTTCTAAAAGACCC 59.737 42.308 4.36 1.35 0.00 4.46
817 820 6.017852 CGGCCTATGAATCTTTCTAAAAGACC 60.018 42.308 0.00 1.66 0.00 3.85
818 821 6.761714 TCGGCCTATGAATCTTTCTAAAAGAC 59.238 38.462 0.00 0.00 0.00 3.01
819 822 6.761714 GTCGGCCTATGAATCTTTCTAAAAGA 59.238 38.462 0.00 4.72 0.00 2.52
820 823 6.538742 TGTCGGCCTATGAATCTTTCTAAAAG 59.461 38.462 0.00 0.00 0.00 2.27
821 824 6.411376 TGTCGGCCTATGAATCTTTCTAAAA 58.589 36.000 0.00 0.00 0.00 1.52
822 825 5.984725 TGTCGGCCTATGAATCTTTCTAAA 58.015 37.500 0.00 0.00 0.00 1.85
823 826 5.607939 TGTCGGCCTATGAATCTTTCTAA 57.392 39.130 0.00 0.00 0.00 2.10
824 827 5.607939 TTGTCGGCCTATGAATCTTTCTA 57.392 39.130 0.00 0.00 0.00 2.10
825 828 4.487714 TTGTCGGCCTATGAATCTTTCT 57.512 40.909 0.00 0.00 0.00 2.52
826 829 5.757850 ATTTGTCGGCCTATGAATCTTTC 57.242 39.130 0.00 0.00 0.00 2.62
827 830 6.530019 AAATTTGTCGGCCTATGAATCTTT 57.470 33.333 0.00 0.00 0.00 2.52
828 831 6.332630 CAAAATTTGTCGGCCTATGAATCTT 58.667 36.000 0.00 0.00 0.00 2.40
829 832 5.163519 CCAAAATTTGTCGGCCTATGAATCT 60.164 40.000 0.00 0.00 0.00 2.40
830 833 5.043248 CCAAAATTTGTCGGCCTATGAATC 58.957 41.667 0.00 0.00 0.00 2.52
831 834 4.141959 CCCAAAATTTGTCGGCCTATGAAT 60.142 41.667 0.00 0.00 0.00 2.57
832 835 3.194542 CCCAAAATTTGTCGGCCTATGAA 59.805 43.478 0.00 0.00 0.00 2.57
833 836 2.757868 CCCAAAATTTGTCGGCCTATGA 59.242 45.455 0.00 0.00 0.00 2.15
834 837 2.495669 ACCCAAAATTTGTCGGCCTATG 59.504 45.455 0.00 0.00 0.00 2.23
835 838 2.758423 GACCCAAAATTTGTCGGCCTAT 59.242 45.455 0.00 0.00 0.00 2.57
836 839 2.164338 GACCCAAAATTTGTCGGCCTA 58.836 47.619 0.00 0.00 0.00 3.93
837 840 0.966179 GACCCAAAATTTGTCGGCCT 59.034 50.000 0.00 0.00 0.00 5.19
838 841 0.966179 AGACCCAAAATTTGTCGGCC 59.034 50.000 4.92 0.00 34.24 6.13
839 842 2.415491 GCTAGACCCAAAATTTGTCGGC 60.415 50.000 4.92 2.58 34.24 5.54
840 843 2.817258 TGCTAGACCCAAAATTTGTCGG 59.183 45.455 4.92 2.47 34.24 4.79
841 844 3.670627 GCTGCTAGACCCAAAATTTGTCG 60.671 47.826 4.92 0.00 34.24 4.35
842 845 3.255642 TGCTGCTAGACCCAAAATTTGTC 59.744 43.478 4.92 0.00 0.00 3.18
843 846 3.005791 GTGCTGCTAGACCCAAAATTTGT 59.994 43.478 4.92 0.00 0.00 2.83
844 847 3.578688 GTGCTGCTAGACCCAAAATTTG 58.421 45.455 0.00 0.00 0.00 2.32
845 848 2.562738 GGTGCTGCTAGACCCAAAATTT 59.437 45.455 0.00 0.00 0.00 1.82
846 849 2.171003 GGTGCTGCTAGACCCAAAATT 58.829 47.619 0.00 0.00 0.00 1.82
847 850 1.839424 GGTGCTGCTAGACCCAAAAT 58.161 50.000 0.00 0.00 0.00 1.82
848 851 0.605319 CGGTGCTGCTAGACCCAAAA 60.605 55.000 0.00 0.00 0.00 2.44
849 852 1.003839 CGGTGCTGCTAGACCCAAA 60.004 57.895 0.00 0.00 0.00 3.28
930 935 2.280321 CCCGTTTTCCGTCCGTGT 60.280 61.111 0.00 0.00 33.66 4.49
931 936 1.562575 CTTCCCGTTTTCCGTCCGTG 61.563 60.000 0.00 0.00 33.66 4.94
932 937 1.301165 CTTCCCGTTTTCCGTCCGT 60.301 57.895 0.00 0.00 33.66 4.69
933 938 2.674084 GCTTCCCGTTTTCCGTCCG 61.674 63.158 0.00 0.00 33.66 4.79
934 939 1.296755 GAGCTTCCCGTTTTCCGTCC 61.297 60.000 0.00 0.00 33.66 4.79
959 988 1.226435 CTAGTGGAGAGCGCGTGTC 60.226 63.158 8.43 5.09 0.00 3.67
1057 1087 3.647771 GGAGGTGGGAGCGGGTTT 61.648 66.667 0.00 0.00 0.00 3.27
1464 1495 0.389166 GCCGAACACTCACCTCAGAG 60.389 60.000 0.00 0.00 41.44 3.35
1474 1505 0.882042 CTCACAGCTTGCCGAACACT 60.882 55.000 0.00 0.00 0.00 3.55
1476 1507 0.391228 TACTCACAGCTTGCCGAACA 59.609 50.000 0.00 0.00 0.00 3.18
1477 1508 1.071605 CTACTCACAGCTTGCCGAAC 58.928 55.000 0.00 0.00 0.00 3.95
1478 1509 0.966179 TCTACTCACAGCTTGCCGAA 59.034 50.000 0.00 0.00 0.00 4.30
1479 1510 1.186200 ATCTACTCACAGCTTGCCGA 58.814 50.000 0.00 0.00 0.00 5.54
1480 1511 2.015736 AATCTACTCACAGCTTGCCG 57.984 50.000 0.00 0.00 0.00 5.69
1482 1513 4.502962 AGAGAAATCTACTCACAGCTTGC 58.497 43.478 0.00 0.00 36.91 4.01
1483 1514 5.108517 GGAGAGAAATCTACTCACAGCTTG 58.891 45.833 0.00 0.00 36.91 4.01
1487 1518 5.913137 ACTGGAGAGAAATCTACTCACAG 57.087 43.478 0.47 0.47 42.05 3.66
1488 1519 5.775195 TCAACTGGAGAGAAATCTACTCACA 59.225 40.000 0.00 0.00 36.91 3.58
1490 1521 8.595362 TTATCAACTGGAGAGAAATCTACTCA 57.405 34.615 0.00 0.00 36.91 3.41
1493 1524 9.528018 CTTCTTATCAACTGGAGAGAAATCTAC 57.472 37.037 0.00 0.00 33.70 2.59
1494 1525 9.480861 TCTTCTTATCAACTGGAGAGAAATCTA 57.519 33.333 0.00 0.00 33.70 1.98
1497 1528 8.820831 TCTTCTTCTTATCAACTGGAGAGAAAT 58.179 33.333 0.00 0.00 33.70 2.17
1500 1531 6.951198 ACTCTTCTTCTTATCAACTGGAGAGA 59.049 38.462 0.00 0.00 0.00 3.10
1504 1535 8.423906 AAGTACTCTTCTTCTTATCAACTGGA 57.576 34.615 0.00 0.00 0.00 3.86
1530 1561 6.420903 CGAAATCACGCATCTAGAGGAAAATA 59.579 38.462 8.95 0.00 0.00 1.40
1580 1611 7.521261 GCAATTATACAAGCTCCTCAAATCTCC 60.521 40.741 0.00 0.00 0.00 3.71
1602 1634 5.502153 TTAACCACGTTTACAACAGCAAT 57.498 34.783 0.00 0.00 0.00 3.56
1654 1687 7.558807 TGAGATAACCAGATCGAACTTAGGTTA 59.441 37.037 20.02 20.02 43.37 2.85
1681 1714 6.775939 AGCTAACGTTTTACTGGAACTAAC 57.224 37.500 5.91 0.00 0.00 2.34
1684 1717 7.496920 ACTTTTAGCTAACGTTTTACTGGAACT 59.503 33.333 5.91 0.00 0.00 3.01
1685 1718 7.633621 ACTTTTAGCTAACGTTTTACTGGAAC 58.366 34.615 5.91 0.00 0.00 3.62
1686 1719 7.790823 ACTTTTAGCTAACGTTTTACTGGAA 57.209 32.000 5.91 0.00 0.00 3.53
1688 1721 9.934190 TTTAACTTTTAGCTAACGTTTTACTGG 57.066 29.630 19.61 0.00 31.47 4.00
1703 1739 8.570488 AGTTATCACGGGGTTTTTAACTTTTAG 58.430 33.333 0.00 0.00 0.00 1.85
1720 1756 0.251916 TGGGGGCAGAAGTTATCACG 59.748 55.000 0.00 0.00 0.00 4.35
1733 1769 3.777910 CCAAAGCTGCATGGGGGC 61.778 66.667 14.59 0.00 32.87 5.80
1761 1797 2.009774 ACGCGGAAAGAAATGGATCAG 58.990 47.619 12.47 0.00 0.00 2.90
1777 1813 1.124116 GCACAGGCAAATTAAAACGCG 59.876 47.619 3.53 3.53 40.72 6.01
1793 1829 5.700832 CACTACCTGAACTAAGAATTGCACA 59.299 40.000 0.00 0.00 0.00 4.57
1824 1879 5.789643 AGTACTTTAGGTGAACGTGGTAA 57.210 39.130 0.00 0.00 0.00 2.85
1842 1897 9.813080 GAATTGTCAATGTCAGAAAGTAAGTAC 57.187 33.333 0.00 0.00 0.00 2.73
1883 1938 2.297033 GGCATCATCCGGTAATTGCATT 59.703 45.455 18.69 0.00 0.00 3.56
1982 2037 1.851658 ATGCACGAACAGCAAAAACC 58.148 45.000 0.00 0.00 46.27 3.27
2135 2190 1.760192 ACAAAGCCTCCATCAGATGC 58.240 50.000 4.68 0.00 36.45 3.91
2163 2218 2.011122 TGTCTTTCGGACCTCCTTCT 57.989 50.000 0.00 0.00 43.89 2.85
2337 2392 4.616835 GCATTGGTCAACTGGCTTTTCTAG 60.617 45.833 0.00 0.00 0.00 2.43
2396 2451 6.713762 AAGAAAACCATCAATTCACTCACA 57.286 33.333 0.00 0.00 0.00 3.58
2491 2546 2.362736 TCAGCATCCTCAAGCATTCAC 58.637 47.619 0.00 0.00 0.00 3.18
2552 2607 1.774254 TCAAGAAACCTGAGAAGGGCA 59.226 47.619 0.00 0.00 0.00 5.36
2672 2727 1.331756 GCATCCTCGGTATTTGCAGTG 59.668 52.381 0.00 0.00 33.58 3.66
2713 2768 3.872511 TCTGCAACATAAAAGGCATGG 57.127 42.857 0.00 0.00 35.45 3.66
2757 2812 4.024048 TCTCGGAAATTCAGTTTTCAGCAC 60.024 41.667 0.00 0.00 37.34 4.40
2844 2899 3.004315 CAGTTTAGCCGTTGGTTTGTCAT 59.996 43.478 0.00 0.00 0.00 3.06
2845 2900 2.356382 CAGTTTAGCCGTTGGTTTGTCA 59.644 45.455 0.00 0.00 0.00 3.58
2896 2951 7.331934 ACCAGATAATTTATATGCACGCTGTAG 59.668 37.037 5.66 0.00 0.00 2.74
2919 2975 6.325028 TGGGAAATGACAAACTTTATGAACCA 59.675 34.615 0.00 0.00 0.00 3.67
2998 3054 3.753272 TGAGCTTGATACTGGAAACTTGC 59.247 43.478 0.00 0.00 0.00 4.01
3025 3081 2.289945 CCAGTAAAGAGCAACCTCAGCT 60.290 50.000 0.00 0.00 46.82 4.24
3223 3283 2.370189 CTGATGGAAAGGGGCTAGGTAG 59.630 54.545 0.00 0.00 0.00 3.18
3234 3294 5.300286 ACCAAAAGTCTGAACTGATGGAAAG 59.700 40.000 13.68 0.00 41.39 2.62
3322 3418 3.155501 GGCCTATACGTGGACATAGAGT 58.844 50.000 0.00 0.00 31.53 3.24
3327 3423 2.365617 CAAGAGGCCTATACGTGGACAT 59.634 50.000 4.42 0.00 34.31 3.06
3334 3430 3.896317 GGCTCAAGAGGCCTATACG 57.104 57.895 4.42 0.00 46.99 3.06
3385 3481 0.390340 CCCCTCTCATGTGTGACACG 60.390 60.000 11.51 0.00 37.14 4.49
3387 3483 1.556451 CATCCCCTCTCATGTGTGACA 59.444 52.381 0.00 0.00 0.00 3.58
3395 3491 2.915604 ACACTTCAACATCCCCTCTCAT 59.084 45.455 0.00 0.00 0.00 2.90
3573 3669 1.181786 GGACTGAGAGTGCTACTGCT 58.818 55.000 0.00 0.00 40.48 4.24
3625 3721 1.143684 TGATGGCCAGAATTAGGGAGC 59.856 52.381 13.05 0.00 0.00 4.70
3630 3726 6.698008 TGTGTAAATGATGGCCAGAATTAG 57.302 37.500 13.05 0.00 0.00 1.73
3694 3790 7.836842 AGTCAAACTAGAAACAAACCAAACAT 58.163 30.769 0.00 0.00 0.00 2.71
3744 3840 2.159028 GGTTGCAACTAAACCTTTGCCA 60.159 45.455 27.64 0.00 46.28 4.92
3824 3920 3.034635 AGTGTTTGTGGTGGCCAAATTA 58.965 40.909 7.24 0.00 34.18 1.40
4179 4292 3.140623 GCTTTGGTCATTTGGTGCAATT 58.859 40.909 0.00 0.00 0.00 2.32
4219 4332 7.283127 GCTCAAACTATCATCCTTGTATTGGAA 59.717 37.037 0.00 0.00 37.13 3.53
4228 4341 3.117738 CCCAGGCTCAAACTATCATCCTT 60.118 47.826 0.00 0.00 0.00 3.36
4280 4393 5.604231 AGATCACCAAGCTGGAATACTATCA 59.396 40.000 8.91 0.00 40.96 2.15
4442 4565 4.785301 TCCTGATAATCAAAGAGGCCTTG 58.215 43.478 6.77 0.30 31.91 3.61
4638 4761 6.147328 GGTTGTTTGACTTGTAGGACTGTATC 59.853 42.308 0.00 0.00 0.00 2.24
4639 4762 5.995897 GGTTGTTTGACTTGTAGGACTGTAT 59.004 40.000 0.00 0.00 0.00 2.29
4640 4763 5.129815 AGGTTGTTTGACTTGTAGGACTGTA 59.870 40.000 0.00 0.00 0.00 2.74
4641 4764 4.080526 AGGTTGTTTGACTTGTAGGACTGT 60.081 41.667 0.00 0.00 0.00 3.55
4642 4765 4.451900 AGGTTGTTTGACTTGTAGGACTG 58.548 43.478 0.00 0.00 0.00 3.51
4643 4766 4.772886 AGGTTGTTTGACTTGTAGGACT 57.227 40.909 0.00 0.00 0.00 3.85
4644 4767 5.362263 TGTAGGTTGTTTGACTTGTAGGAC 58.638 41.667 0.00 0.00 0.00 3.85
4645 4768 5.617528 TGTAGGTTGTTTGACTTGTAGGA 57.382 39.130 0.00 0.00 0.00 2.94
4646 4769 6.594159 CCTATGTAGGTTGTTTGACTTGTAGG 59.406 42.308 0.00 0.00 38.69 3.18
4647 4770 7.383687 TCCTATGTAGGTTGTTTGACTTGTAG 58.616 38.462 6.01 0.00 44.02 2.74
4648 4771 7.305813 TCCTATGTAGGTTGTTTGACTTGTA 57.694 36.000 6.01 0.00 44.02 2.41
4649 4772 6.182507 TCCTATGTAGGTTGTTTGACTTGT 57.817 37.500 6.01 0.00 44.02 3.16
4650 4773 7.504924 TTTCCTATGTAGGTTGTTTGACTTG 57.495 36.000 6.01 0.00 44.02 3.16
4651 4774 7.778382 AGTTTTCCTATGTAGGTTGTTTGACTT 59.222 33.333 6.01 0.00 44.02 3.01
4652 4775 7.287810 AGTTTTCCTATGTAGGTTGTTTGACT 58.712 34.615 6.01 0.96 44.02 3.41
4653 4776 7.506328 AGTTTTCCTATGTAGGTTGTTTGAC 57.494 36.000 6.01 0.00 44.02 3.18
4654 4777 7.996644 AGAAGTTTTCCTATGTAGGTTGTTTGA 59.003 33.333 6.01 0.00 44.02 2.69
4655 4778 8.166422 AGAAGTTTTCCTATGTAGGTTGTTTG 57.834 34.615 6.01 0.00 44.02 2.93
4656 4779 9.856162 TTAGAAGTTTTCCTATGTAGGTTGTTT 57.144 29.630 6.01 0.00 44.02 2.83
4657 4780 9.503399 CTTAGAAGTTTTCCTATGTAGGTTGTT 57.497 33.333 6.01 0.00 44.02 2.83
4658 4781 8.101419 CCTTAGAAGTTTTCCTATGTAGGTTGT 58.899 37.037 6.01 0.00 44.02 3.32
4659 4782 8.319146 TCCTTAGAAGTTTTCCTATGTAGGTTG 58.681 37.037 6.01 0.00 44.02 3.77
4660 4783 8.445361 TCCTTAGAAGTTTTCCTATGTAGGTT 57.555 34.615 6.01 0.00 44.02 3.50
4661 4784 8.625467 ATCCTTAGAAGTTTTCCTATGTAGGT 57.375 34.615 6.01 0.00 44.02 3.08
4662 4785 9.549078 GAATCCTTAGAAGTTTTCCTATGTAGG 57.451 37.037 0.00 0.00 45.02 3.18
4663 4786 9.549078 GGAATCCTTAGAAGTTTTCCTATGTAG 57.451 37.037 10.85 0.00 34.68 2.74
4664 4787 9.280456 AGGAATCCTTAGAAGTTTTCCTATGTA 57.720 33.333 15.93 0.00 40.65 2.29
4665 4788 8.164057 AGGAATCCTTAGAAGTTTTCCTATGT 57.836 34.615 15.93 0.59 40.65 2.29
4739 4895 5.245751 CCAAGCCATATGCCCATATTAAACA 59.754 40.000 0.00 0.00 42.71 2.83
5074 5243 9.220767 GAATAATTACTGGGCCTTAATACTCTG 57.779 37.037 4.53 0.00 0.00 3.35
5284 5453 4.997395 TGAAGATTCACTAACTGGTTGCTC 59.003 41.667 0.00 0.00 31.01 4.26
5286 5455 5.470098 TCTTGAAGATTCACTAACTGGTTGC 59.530 40.000 0.00 0.00 36.83 4.17
5374 5543 6.208204 CCAGGGAATAGCTTGAAAATGATAGG 59.792 42.308 0.00 0.00 0.00 2.57
5472 5642 7.339212 TCCATTTCTGTTGTCTTGAAGAAAAGA 59.661 33.333 0.00 0.00 40.82 2.52
5524 5694 9.672086 CTGAAATGGAATAAACACGTAAAGAAA 57.328 29.630 0.00 0.00 0.00 2.52
5525 5695 8.293867 CCTGAAATGGAATAAACACGTAAAGAA 58.706 33.333 0.00 0.00 0.00 2.52
5526 5696 7.662258 TCCTGAAATGGAATAAACACGTAAAGA 59.338 33.333 0.00 0.00 32.39 2.52
5527 5697 7.749126 GTCCTGAAATGGAATAAACACGTAAAG 59.251 37.037 0.00 0.00 37.93 1.85
5618 5792 5.592282 TGAACTTGCAACTTTCCTGTTCATA 59.408 36.000 18.69 3.77 37.82 2.15
5761 5935 6.437162 AGCATGAACCTTTTTAGCCAATTCTA 59.563 34.615 0.00 0.00 0.00 2.10
6036 6210 6.259550 AGTACCTAGAAAAGCTGCAAAATG 57.740 37.500 1.02 0.00 0.00 2.32
6156 6330 4.712476 CATCTTAAAGCAGCCCTCTGTAT 58.288 43.478 0.00 0.00 42.29 2.29
6389 6563 4.872124 TCATTCAAATCAGAGATGTCCACG 59.128 41.667 0.00 0.00 0.00 4.94
6548 6722 5.227569 TGCTTGGATAGTTCTCACTCAAA 57.772 39.130 0.00 0.00 34.06 2.69
7070 7245 1.266989 GGTGAACTGGAAAGGCTTTCG 59.733 52.381 28.28 19.85 40.57 3.46
7159 7334 4.936802 AGTGAGGGTTTAGAGAGCTCTTA 58.063 43.478 19.36 9.41 40.93 2.10
7326 7502 5.816258 GTCTTGGCTATTTCCTACCTACAAC 59.184 44.000 0.00 0.00 0.00 3.32
7366 7542 1.753073 AGCCAAGGCATATGCTTTCAC 59.247 47.619 26.12 17.87 44.88 3.18
7608 7784 3.489416 TCTGTTAATGCGTATGATGCGAC 59.511 43.478 7.20 0.00 31.36 5.19
7623 7801 6.295249 TGTCAGGAATGTGAACATCTGTTAA 58.705 36.000 10.32 0.00 38.56 2.01
7647 7825 2.158726 ACACCCAGGTACGACACAAATT 60.159 45.455 0.00 0.00 0.00 1.82
7653 7831 0.677288 CAAGACACCCAGGTACGACA 59.323 55.000 0.00 0.00 0.00 4.35
7716 7898 1.673993 TGGCACCACTGTATTGGCG 60.674 57.895 9.03 0.00 40.77 5.69
7962 8144 0.673022 CACTGTCAGAAGCAGCCTCC 60.673 60.000 6.91 0.00 37.47 4.30
8025 8207 1.299926 GGGGTCGTCGGAATCATCG 60.300 63.158 0.00 0.00 0.00 3.84
8065 8247 2.392662 CAGATACCTCAGCTCCCAAGA 58.607 52.381 0.00 0.00 0.00 3.02
8171 8353 8.470657 AGAGCAACTGAATACATGATCTACTA 57.529 34.615 0.00 0.00 36.83 1.82
8347 8529 7.442969 ACTTTATTGTAGACACCGAATTTGACA 59.557 33.333 0.00 0.00 0.00 3.58
8350 8532 8.901748 CAAACTTTATTGTAGACACCGAATTTG 58.098 33.333 0.00 0.00 0.00 2.32
8399 8594 8.282592 GGCTTTTGGTTGAAATTTCTAAATGAC 58.717 33.333 18.64 13.57 0.00 3.06
8405 8600 5.285651 CGTGGCTTTTGGTTGAAATTTCTA 58.714 37.500 18.64 8.95 0.00 2.10
8445 8641 4.041075 TGGAAGCAATACTGTGTGGTAGAA 59.959 41.667 0.00 0.00 0.00 2.10
8448 8644 4.359434 TTGGAAGCAATACTGTGTGGTA 57.641 40.909 0.00 0.00 0.00 3.25
8450 8646 3.317711 TGTTTGGAAGCAATACTGTGTGG 59.682 43.478 0.00 0.00 0.00 4.17
8451 8647 4.539870 CTGTTTGGAAGCAATACTGTGTG 58.460 43.478 0.00 0.00 0.00 3.82
8452 8648 3.004734 GCTGTTTGGAAGCAATACTGTGT 59.995 43.478 0.00 0.00 40.52 3.72
8453 8649 3.254166 AGCTGTTTGGAAGCAATACTGTG 59.746 43.478 0.00 0.00 43.37 3.66
8454 8650 3.490348 AGCTGTTTGGAAGCAATACTGT 58.510 40.909 0.00 0.00 43.37 3.55
8564 9457 3.386768 TGGAGCCGAAATAGCATAGAC 57.613 47.619 0.00 0.00 0.00 2.59
8572 9465 3.973206 TGAGAGTTTGGAGCCGAAATA 57.027 42.857 0.00 0.00 0.00 1.40
8584 9477 8.533569 TTTTGGAGGTAGATTTTTGAGAGTTT 57.466 30.769 0.00 0.00 0.00 2.66
8591 9512 7.360017 GCGGAAAATTTTGGAGGTAGATTTTTG 60.360 37.037 8.47 0.00 32.00 2.44
8592 9513 6.649141 GCGGAAAATTTTGGAGGTAGATTTTT 59.351 34.615 8.47 0.00 32.00 1.94
8593 9514 6.163476 GCGGAAAATTTTGGAGGTAGATTTT 58.837 36.000 8.47 0.00 33.87 1.82
8594 9515 5.245075 TGCGGAAAATTTTGGAGGTAGATTT 59.755 36.000 8.47 0.00 0.00 2.17
8595 9516 4.770010 TGCGGAAAATTTTGGAGGTAGATT 59.230 37.500 8.47 0.00 0.00 2.40
8596 9517 4.340617 TGCGGAAAATTTTGGAGGTAGAT 58.659 39.130 8.47 0.00 0.00 1.98
8597 9518 3.757270 TGCGGAAAATTTTGGAGGTAGA 58.243 40.909 8.47 0.00 0.00 2.59
8598 9519 4.718940 ATGCGGAAAATTTTGGAGGTAG 57.281 40.909 8.47 0.00 0.00 3.18
8600 9521 4.086457 AGTATGCGGAAAATTTTGGAGGT 58.914 39.130 8.47 0.00 0.00 3.85
8601 9522 4.157656 TGAGTATGCGGAAAATTTTGGAGG 59.842 41.667 8.47 0.00 0.00 4.30
8602 9523 5.309323 TGAGTATGCGGAAAATTTTGGAG 57.691 39.130 8.47 0.57 0.00 3.86
8603 9524 5.713792 TTGAGTATGCGGAAAATTTTGGA 57.286 34.783 8.47 0.00 0.00 3.53
8607 9528 6.266168 TGTCATTGAGTATGCGGAAAATTT 57.734 33.333 0.00 0.00 34.06 1.82
8608 9529 5.895636 TGTCATTGAGTATGCGGAAAATT 57.104 34.783 0.00 0.00 34.06 1.82
8615 9567 2.352651 CCCACTTGTCATTGAGTATGCG 59.647 50.000 0.00 0.00 34.06 4.73
8620 9572 1.774254 TGGTCCCACTTGTCATTGAGT 59.226 47.619 0.00 0.00 0.00 3.41
8640 9592 4.142038 GAGGTGTTGTCAAATGTAGGGTT 58.858 43.478 0.00 0.00 0.00 4.11
8664 9616 3.803082 CCGCCCGCAACACATGAG 61.803 66.667 0.00 0.00 0.00 2.90
8701 9653 1.622811 CTCCTTCACTGCTCCTCAAGT 59.377 52.381 0.00 0.00 0.00 3.16
8702 9654 1.675415 GCTCCTTCACTGCTCCTCAAG 60.675 57.143 0.00 0.00 0.00 3.02
8704 9656 0.833409 TGCTCCTTCACTGCTCCTCA 60.833 55.000 0.00 0.00 0.00 3.86
8705 9657 0.108233 CTGCTCCTTCACTGCTCCTC 60.108 60.000 0.00 0.00 0.00 3.71
8706 9658 0.835543 ACTGCTCCTTCACTGCTCCT 60.836 55.000 0.00 0.00 0.00 3.69
8709 9661 0.250209 CACACTGCTCCTTCACTGCT 60.250 55.000 0.00 0.00 0.00 4.24
8710 9662 0.533755 ACACACTGCTCCTTCACTGC 60.534 55.000 0.00 0.00 0.00 4.40
8711 9663 1.506493 GACACACTGCTCCTTCACTG 58.494 55.000 0.00 0.00 0.00 3.66
8713 9665 0.946221 CCGACACACTGCTCCTTCAC 60.946 60.000 0.00 0.00 0.00 3.18
8715 9667 1.374758 CCCGACACACTGCTCCTTC 60.375 63.158 0.00 0.00 0.00 3.46
8717 9669 3.314331 CCCCGACACACTGCTCCT 61.314 66.667 0.00 0.00 0.00 3.69
8718 9670 3.302347 CTCCCCGACACACTGCTCC 62.302 68.421 0.00 0.00 0.00 4.70
8722 9674 2.650116 CCCTCTCCCCGACACACTG 61.650 68.421 0.00 0.00 0.00 3.66
8723 9675 2.283966 CCCTCTCCCCGACACACT 60.284 66.667 0.00 0.00 0.00 3.55
8725 9677 2.283676 GTCCCTCTCCCCGACACA 60.284 66.667 0.00 0.00 0.00 3.72
8726 9678 3.450115 CGTCCCTCTCCCCGACAC 61.450 72.222 0.00 0.00 0.00 3.67
8728 9680 4.437587 TCCGTCCCTCTCCCCGAC 62.438 72.222 0.00 0.00 0.00 4.79
8729 9681 4.124943 CTCCGTCCCTCTCCCCGA 62.125 72.222 0.00 0.00 0.00 5.14
8731 9683 4.779733 TGCTCCGTCCCTCTCCCC 62.780 72.222 0.00 0.00 0.00 4.81
8733 9685 2.363147 ACTGCTCCGTCCCTCTCC 60.363 66.667 0.00 0.00 0.00 3.71
8735 9687 2.681778 CCACTGCTCCGTCCCTCT 60.682 66.667 0.00 0.00 0.00 3.69
8754 9742 1.296727 GGCGATGCTAAACCTGTACC 58.703 55.000 0.00 0.00 0.00 3.34
8755 9743 1.933853 CTGGCGATGCTAAACCTGTAC 59.066 52.381 0.00 0.00 0.00 2.90
8756 9744 1.742411 GCTGGCGATGCTAAACCTGTA 60.742 52.381 0.00 0.00 0.00 2.74
8757 9745 1.026718 GCTGGCGATGCTAAACCTGT 61.027 55.000 0.00 0.00 0.00 4.00
8758 9746 1.723870 GCTGGCGATGCTAAACCTG 59.276 57.895 0.00 0.00 0.00 4.00
8759 9747 1.815421 CGCTGGCGATGCTAAACCT 60.815 57.895 9.51 0.00 42.83 3.50
8760 9748 1.813753 TCGCTGGCGATGCTAAACC 60.814 57.895 13.78 0.00 44.01 3.27
8761 9749 3.794270 TCGCTGGCGATGCTAAAC 58.206 55.556 13.78 0.00 44.01 2.01
8789 9777 5.363939 GAGGAGTTCATCATAACCTTCAGG 58.636 45.833 0.00 0.00 42.17 3.86
8790 9778 5.104776 TGGAGGAGTTCATCATAACCTTCAG 60.105 44.000 0.00 0.00 30.67 3.02
8791 9779 4.782691 TGGAGGAGTTCATCATAACCTTCA 59.217 41.667 0.00 0.00 31.57 3.02
8792 9780 5.359194 TGGAGGAGTTCATCATAACCTTC 57.641 43.478 0.00 0.00 0.00 3.46
8794 9782 5.014123 TGTTTGGAGGAGTTCATCATAACCT 59.986 40.000 0.00 0.00 0.00 3.50
8795 9783 5.253330 TGTTTGGAGGAGTTCATCATAACC 58.747 41.667 0.00 0.00 0.00 2.85
8796 9784 6.092807 GTCTGTTTGGAGGAGTTCATCATAAC 59.907 42.308 0.00 1.03 0.00 1.89
8799 9787 4.288105 AGTCTGTTTGGAGGAGTTCATCAT 59.712 41.667 0.00 0.00 0.00 2.45
8800 9788 3.648067 AGTCTGTTTGGAGGAGTTCATCA 59.352 43.478 0.00 0.00 0.00 3.07
8801 9789 3.999663 CAGTCTGTTTGGAGGAGTTCATC 59.000 47.826 0.00 0.00 0.00 2.92
8805 9793 1.202818 GGCAGTCTGTTTGGAGGAGTT 60.203 52.381 0.93 0.00 0.00 3.01
8806 9794 0.398318 GGCAGTCTGTTTGGAGGAGT 59.602 55.000 0.93 0.00 0.00 3.85
8807 9795 0.689623 AGGCAGTCTGTTTGGAGGAG 59.310 55.000 0.93 0.00 0.00 3.69
8808 9796 1.623811 GTAGGCAGTCTGTTTGGAGGA 59.376 52.381 0.93 0.00 0.00 3.71
8811 9799 0.320421 GCGTAGGCAGTCTGTTTGGA 60.320 55.000 1.75 0.00 39.62 3.53
8812 9800 0.320771 AGCGTAGGCAGTCTGTTTGG 60.321 55.000 10.48 0.00 43.41 3.28
8821 10190 0.816825 ATGCAATCCAGCGTAGGCAG 60.817 55.000 10.48 0.96 43.41 4.85
8914 10304 4.615541 GCTGTTGCCGTTTAGTATGTTTTC 59.384 41.667 0.00 0.00 0.00 2.29
9146 10536 7.337938 TGCATCTTATCACATTGAACCTAGAA 58.662 34.615 0.00 0.00 0.00 2.10
9149 10539 5.528690 GCTGCATCTTATCACATTGAACCTA 59.471 40.000 0.00 0.00 0.00 3.08
9183 10573 6.264744 CCTATCATTCTGGAGCAATGAATGTT 59.735 38.462 15.86 12.31 42.23 2.71
9247 10637 1.753073 CGTCTATGTACGGAAGGGGTT 59.247 52.381 0.00 0.00 39.19 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.