Multiple sequence alignment - TraesCS7A01G203800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G203800 chr7A 100.000 6115 0 0 1 6115 165926059 165932173 0.000000e+00 11293.0
1 TraesCS7A01G203800 chr7A 92.000 125 8 2 5721 5844 677696247 677696370 2.270000e-39 174.0
2 TraesCS7A01G203800 chr7A 89.189 111 12 0 5862 5972 572868076 572867966 8.270000e-29 139.0
3 TraesCS7A01G203800 chr7A 93.443 61 3 1 5996 6055 218238781 218238841 8.440000e-14 89.8
4 TraesCS7A01G203800 chr7D 93.203 4208 176 52 1523 5680 164485020 164489167 0.000000e+00 6085.0
5 TraesCS7A01G203800 chr7D 90.111 718 42 15 834 1529 164481973 164482683 0.000000e+00 905.0
6 TraesCS7A01G203800 chr7D 86.111 324 45 0 248 571 164481079 164481402 3.510000e-92 350.0
7 TraesCS7A01G203800 chr7D 86.387 191 11 7 663 843 164481637 164481822 1.740000e-45 195.0
8 TraesCS7A01G203800 chr7D 90.769 130 10 2 5714 5841 41471832 41471961 8.150000e-39 172.0
9 TraesCS7A01G203800 chr7D 80.469 256 24 13 1 254 164413337 164413568 8.150000e-39 172.0
10 TraesCS7A01G203800 chr7D 89.855 69 7 0 5992 6060 42635002 42634934 8.440000e-14 89.8
11 TraesCS7A01G203800 chr7B 87.247 2768 242 54 1920 4629 126756497 126759211 0.000000e+00 3053.0
12 TraesCS7A01G203800 chr7B 92.845 1188 32 18 587 1735 126755300 126756473 0.000000e+00 1674.0
13 TraesCS7A01G203800 chr7B 89.074 1080 79 10 4677 5723 126759210 126760283 0.000000e+00 1304.0
14 TraesCS7A01G203800 chr7B 92.966 526 29 3 1 522 126754629 126755150 0.000000e+00 760.0
15 TraesCS7A01G203800 chr7B 94.203 69 4 0 6047 6115 126760291 126760359 8.380000e-19 106.0
16 TraesCS7A01G203800 chr7B 94.737 57 3 0 5996 6052 59637690 59637746 8.440000e-14 89.8
17 TraesCS7A01G203800 chr3D 93.443 122 7 1 5721 5841 91710928 91710807 4.870000e-41 180.0
18 TraesCS7A01G203800 chr3D 87.162 148 17 2 5698 5844 128213984 128214130 3.790000e-37 167.0
19 TraesCS7A01G203800 chr3D 91.429 105 9 0 5862 5966 5081630 5081734 1.780000e-30 145.0
20 TraesCS7A01G203800 chr1D 92.742 124 9 0 5719 5842 387944780 387944903 4.870000e-41 180.0
21 TraesCS7A01G203800 chr1D 90.566 106 9 1 5858 5963 458126487 458126591 8.270000e-29 139.0
22 TraesCS7A01G203800 chr1D 98.148 54 1 0 5996 6049 96069613 96069666 1.810000e-15 95.3
23 TraesCS7A01G203800 chr1D 94.828 58 3 0 5995 6052 384510786 384510729 2.350000e-14 91.6
24 TraesCS7A01G203800 chr1D 88.571 70 7 1 5997 6065 37206827 37206758 3.930000e-12 84.2
25 TraesCS7A01G203800 chr1B 92.000 125 9 1 5719 5842 521219375 521219499 2.270000e-39 174.0
26 TraesCS7A01G203800 chr1B 94.737 57 3 0 5996 6052 415223384 415223440 8.440000e-14 89.8
27 TraesCS7A01G203800 chr3B 91.935 124 9 1 5723 5845 805684942 805684819 8.150000e-39 172.0
28 TraesCS7A01G203800 chr3B 90.076 131 11 2 5715 5844 654649705 654649834 1.050000e-37 169.0
29 TraesCS7A01G203800 chr5D 89.630 135 12 2 5711 5844 59947853 59947720 2.930000e-38 171.0
30 TraesCS7A01G203800 chr5D 91.429 105 9 0 5862 5966 58137569 58137673 1.780000e-30 145.0
31 TraesCS7A01G203800 chr5B 92.381 105 8 0 5862 5966 681159810 681159914 3.820000e-32 150.0
32 TraesCS7A01G203800 chr5A 90.741 108 10 0 5862 5969 636635356 636635249 1.780000e-30 145.0
33 TraesCS7A01G203800 chr5A 100.000 28 0 0 5966 5993 363847424 363847397 1.100000e-02 52.8
34 TraesCS7A01G203800 chr2D 90.179 112 10 1 5863 5973 272263064 272263175 1.780000e-30 145.0
35 TraesCS7A01G203800 chr2D 93.103 58 4 0 5998 6055 270849485 270849542 1.090000e-12 86.1
36 TraesCS7A01G203800 chr2B 90.654 107 10 0 5860 5966 660986838 660986944 6.390000e-30 143.0
37 TraesCS7A01G203800 chr3A 88.034 117 13 1 5863 5978 443410458 443410342 2.970000e-28 137.0
38 TraesCS7A01G203800 chr6A 95.161 62 2 1 5996 6056 610200598 610200537 5.050000e-16 97.1
39 TraesCS7A01G203800 chr2A 100.000 28 0 0 5966 5993 102289514 102289487 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G203800 chr7A 165926059 165932173 6114 False 11293.00 11293 100.000 1 6115 1 chr7A.!!$F1 6114
1 TraesCS7A01G203800 chr7D 164481079 164489167 8088 False 1883.75 6085 88.953 248 5680 4 chr7D.!!$F3 5432
2 TraesCS7A01G203800 chr7B 126754629 126760359 5730 False 1379.40 3053 91.267 1 6115 5 chr7B.!!$F2 6114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 250 0.246360 TGTGTGATGAAGTCGGCGAT 59.754 50.0 14.79 0.0 0.0 4.58 F
400 405 0.394899 CCTCCTTGACTCATTGGGCC 60.395 60.0 0.00 0.0 0.0 5.80 F
1421 1918 0.671781 AGCCGTGCAGCTAGACAAAG 60.672 55.0 0.00 0.0 42.7 2.77 F
2643 5527 0.179103 GCCATCCTTCCAAATTGCCG 60.179 55.0 0.00 0.0 0.0 5.69 F
2800 5684 0.690762 TGAGGTGGTTAACAGAGCCC 59.309 55.0 8.10 0.0 0.0 5.19 F
3253 6163 0.721718 GCACACTTACGGCACTGATC 59.278 55.0 0.00 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 1887 0.605319 TGCACGGCTTAACTCCAAGG 60.605 55.000 0.00 0.0 0.00 3.61 R
1675 4541 0.843984 GGTATACCCACATGGCCACT 59.156 55.000 8.16 0.0 37.83 4.00 R
3232 6142 0.179070 TCAGTGCCGTAAGTGTGCAA 60.179 50.000 0.00 0.0 36.65 4.08 R
4282 7201 4.989168 ACAGTGTCCAACGAGAAGAAATAC 59.011 41.667 0.00 0.0 0.00 1.89 R
4703 7631 4.022068 ACGGAACAATCAACAAATCATGCT 60.022 37.500 0.00 0.0 0.00 3.79 R
5147 8104 3.188100 TTCGCGGCAGAGCATTCG 61.188 61.111 6.13 0.0 36.85 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.485947 TTTATGCGGAACTTGCACATC 57.514 42.857 0.00 0.00 46.57 3.06
99 104 7.279090 CCGGAGAACACATATGTACAAATTGTA 59.721 37.037 8.32 1.08 38.45 2.41
151 156 2.421424 CTGCTGGTAGAAAGGCAACATC 59.579 50.000 0.00 0.00 41.41 3.06
159 164 1.880027 GAAAGGCAACATCCGAACAGT 59.120 47.619 0.00 0.00 41.41 3.55
170 175 1.066430 TCCGAACAGTTAGGGCATCAC 60.066 52.381 12.17 0.00 0.00 3.06
197 202 4.749598 GGAAAAAGAAATGCAAACCGTCAT 59.250 37.500 0.00 0.00 0.00 3.06
245 250 0.246360 TGTGTGATGAAGTCGGCGAT 59.754 50.000 14.79 0.00 0.00 4.58
400 405 0.394899 CCTCCTTGACTCATTGGGCC 60.395 60.000 0.00 0.00 0.00 5.80
409 414 4.569180 CATTGGGCCGGATCCGCT 62.569 66.667 29.12 5.51 38.24 5.52
437 442 4.037565 CAGCAACATGCCATGTGATCTATT 59.962 41.667 11.79 0.00 46.52 1.73
442 447 3.650281 TGCCATGTGATCTATTGGTGT 57.350 42.857 9.23 0.00 0.00 4.16
610 730 9.599866 AAAAATCTCTTTGGTTTGTAAGAAAGG 57.400 29.630 0.00 0.00 30.55 3.11
802 1110 3.553904 GACCTGAACCTACCGATCTACT 58.446 50.000 0.00 0.00 0.00 2.57
803 1111 3.553904 ACCTGAACCTACCGATCTACTC 58.446 50.000 0.00 0.00 0.00 2.59
804 1112 2.885894 CCTGAACCTACCGATCTACTCC 59.114 54.545 0.00 0.00 0.00 3.85
805 1113 3.552875 CTGAACCTACCGATCTACTCCA 58.447 50.000 0.00 0.00 0.00 3.86
806 1114 3.285484 TGAACCTACCGATCTACTCCAC 58.715 50.000 0.00 0.00 0.00 4.02
884 1352 2.733671 GCGCCGTTTCCTCGTTACC 61.734 63.158 0.00 0.00 0.00 2.85
912 1380 1.074566 CAGCCAGTTCTTTTCTCCCCT 59.925 52.381 0.00 0.00 0.00 4.79
916 1384 2.556114 CCAGTTCTTTTCTCCCCTGCAT 60.556 50.000 0.00 0.00 0.00 3.96
1248 1722 1.501582 ATTTCCCCTTCTCTCCTCGG 58.498 55.000 0.00 0.00 0.00 4.63
1300 1774 5.687166 TTTCACCTATCAATTCGGTAGGT 57.313 39.130 11.78 11.78 46.90 3.08
1391 1887 2.946762 GGGCAAACGACTGCACTC 59.053 61.111 13.88 0.00 42.76 3.51
1421 1918 0.671781 AGCCGTGCAGCTAGACAAAG 60.672 55.000 0.00 0.00 42.70 2.77
1427 1924 1.271543 TGCAGCTAGACAAAGCACCAT 60.272 47.619 0.00 0.00 45.30 3.55
1745 4611 5.178996 CAGCAGCATCTTGTTAGTATGGATC 59.821 44.000 0.00 0.00 0.00 3.36
1801 4667 5.652452 TGCTATCTACAGCAGACTGAACTTA 59.348 40.000 6.65 0.00 46.41 2.24
1881 4751 1.737735 CACGGCTCTCATGTCGCAA 60.738 57.895 0.00 0.00 0.00 4.85
1907 4777 7.031372 CCTGTGTGTTAGATGATCAATTTTGG 58.969 38.462 0.00 0.00 0.00 3.28
1911 4781 8.299570 GTGTGTTAGATGATCAATTTTGGTCTT 58.700 33.333 0.00 0.00 39.07 3.01
2184 5057 4.280929 GGATGTGCAAAGGTTTTAGAGGTT 59.719 41.667 0.00 0.00 0.00 3.50
2296 5169 7.875041 GCTAATAGGTTCTCTCAATGCAGAATA 59.125 37.037 0.00 0.00 31.35 1.75
2351 5227 2.785868 AGCCCGCTAGCTTTGAATG 58.214 52.632 13.93 0.00 41.41 2.67
2355 5231 1.398390 CCCGCTAGCTTTGAATGTGAC 59.602 52.381 13.93 0.00 0.00 3.67
2368 5244 5.581126 TGAATGTGACCATTTATCAAGGC 57.419 39.130 0.00 0.00 41.37 4.35
2547 5427 0.687427 AGTTGCAGTGGGGCTTTGTT 60.687 50.000 0.00 0.00 34.04 2.83
2584 5464 7.396190 TCAAAACAAAAATACAATACACCGC 57.604 32.000 0.00 0.00 0.00 5.68
2643 5527 0.179103 GCCATCCTTCCAAATTGCCG 60.179 55.000 0.00 0.00 0.00 5.69
2692 5576 7.716998 CCCACTTAATCAGCTCATGTTTAGTAT 59.283 37.037 0.00 0.00 0.00 2.12
2741 5625 5.237344 GTGCACTGAACAATGACTATATCCC 59.763 44.000 10.32 0.00 0.00 3.85
2756 5640 7.789831 TGACTATATCCCTCTAGACATTGGTTT 59.210 37.037 0.00 0.00 0.00 3.27
2790 5674 2.971330 TGGCAATCAAATTGAGGTGGTT 59.029 40.909 1.10 0.00 42.83 3.67
2800 5684 0.690762 TGAGGTGGTTAACAGAGCCC 59.309 55.000 8.10 0.00 0.00 5.19
2865 5749 1.837538 CTTGTGGGTTGTGGCGTACG 61.838 60.000 11.84 11.84 0.00 3.67
2912 5796 4.902443 ATGCTCAGAAAATCATGCAGAG 57.098 40.909 0.00 0.00 33.87 3.35
3100 6010 2.992543 TGAAGCATAACATTTTTGCGCC 59.007 40.909 4.18 0.00 41.22 6.53
3116 6026 1.439644 GCCGTTCTTTGTTTGCCCA 59.560 52.632 0.00 0.00 0.00 5.36
3215 6125 3.818586 CATGCAATGCGGACCTTTT 57.181 47.368 0.00 0.00 37.62 2.27
3230 6140 5.005682 CGGACCTTTTCTTTTCTTTTTGCAG 59.994 40.000 0.00 0.00 0.00 4.41
3231 6141 5.874810 GGACCTTTTCTTTTCTTTTTGCAGT 59.125 36.000 0.00 0.00 0.00 4.40
3232 6142 6.371548 GGACCTTTTCTTTTCTTTTTGCAGTT 59.628 34.615 0.00 0.00 0.00 3.16
3234 6144 7.584108 ACCTTTTCTTTTCTTTTTGCAGTTTG 58.416 30.769 0.00 0.00 0.00 2.93
3235 6145 6.524239 CCTTTTCTTTTCTTTTTGCAGTTTGC 59.476 34.615 0.00 0.00 45.29 3.68
3253 6163 0.721718 GCACACTTACGGCACTGATC 59.278 55.000 0.00 0.00 0.00 2.92
3254 6164 1.939381 GCACACTTACGGCACTGATCA 60.939 52.381 0.00 0.00 0.00 2.92
3339 6249 8.246908 TGTTTCGTAGTCGATGAACATTTATT 57.753 30.769 0.00 0.00 45.65 1.40
3388 6299 8.741603 AATGATGATGACAGTCATAATGAACA 57.258 30.769 17.24 9.97 37.20 3.18
3691 6606 2.237143 TGTCGCTCCTTCCAGATTCAAT 59.763 45.455 0.00 0.00 0.00 2.57
3710 6625 7.896383 TTCAATTCATCTTTATGTAAGGGGG 57.104 36.000 0.00 0.00 34.46 5.40
3777 6692 6.429692 CGGCATAGATTTTATCACCATGGTTA 59.570 38.462 16.84 8.25 0.00 2.85
3884 6799 8.420222 ACTTTTAAAATTGACATCATGGTGTGA 58.580 29.630 18.31 4.87 42.06 3.58
3980 6896 5.547666 TCATATTGGTGCCCACATCTATACT 59.452 40.000 0.40 0.00 29.27 2.12
3987 6904 5.433526 GTGCCCACATCTATACTTGGTTAA 58.566 41.667 0.00 0.00 0.00 2.01
3988 6905 6.062095 GTGCCCACATCTATACTTGGTTAAT 58.938 40.000 0.00 0.00 0.00 1.40
4095 7012 0.985760 TCTAAAACCAGGCGGCCTTA 59.014 50.000 21.26 8.05 34.57 2.69
4176 7093 9.362151 ACTTATAAACAATCCCTTCTTGACAAA 57.638 29.630 0.00 0.00 0.00 2.83
4330 7249 1.471684 GAACTCTTTCATGCTGCTGGG 59.528 52.381 0.00 0.00 0.00 4.45
4400 7326 5.352284 ACTTTGAACAGTACTGAGTCAGTG 58.648 41.667 31.70 23.20 45.01 3.66
4477 7403 7.703621 AGTTGCCAATTTCATTTCATCTATTCG 59.296 33.333 0.00 0.00 0.00 3.34
4697 7625 1.798223 GTATGCAACTGTCAGCGAACA 59.202 47.619 0.00 0.00 0.00 3.18
4703 7631 4.693095 TGCAACTGTCAGCGAACAATATAA 59.307 37.500 0.00 0.00 0.00 0.98
4724 7652 9.754382 ATATAAGCATGATTTGTTGATTGTTCC 57.246 29.630 0.00 0.00 0.00 3.62
4732 7660 7.429633 TGATTTGTTGATTGTTCCGTATGTTT 58.570 30.769 0.00 0.00 0.00 2.83
4824 7764 7.103641 TGCCTTAGTTTGGAGTTATAGACTTG 58.896 38.462 0.00 0.00 39.19 3.16
4862 7803 5.092968 TGGTTCCAATCCCAAATTTCATCT 58.907 37.500 0.00 0.00 0.00 2.90
4991 7940 8.088365 AGCTTATATGACGCTCACATGTATTTA 58.912 33.333 0.00 0.00 0.00 1.40
4993 7942 9.411801 CTTATATGACGCTCACATGTATTTACT 57.588 33.333 0.00 0.00 0.00 2.24
4994 7943 9.758651 TTATATGACGCTCACATGTATTTACTT 57.241 29.630 0.00 0.00 0.00 2.24
5147 8104 4.051922 CCTCGGATGTGCTTCTAATGTAC 58.948 47.826 0.00 0.00 0.00 2.90
5185 8142 7.608755 GCGAACATGTAAATTTGCGAATTTAT 58.391 30.769 26.99 15.38 44.88 1.40
5233 8190 2.749076 TCATGGTTCCTTGATTTCTGCG 59.251 45.455 3.75 0.00 0.00 5.18
5247 8204 0.666274 TCTGCGGTGTGCTTCTAACG 60.666 55.000 0.00 0.00 46.63 3.18
5258 8215 4.945543 TGTGCTTCTAACGTAGAGATGGTA 59.054 41.667 12.45 3.14 35.96 3.25
5262 8219 7.491696 GTGCTTCTAACGTAGAGATGGTATTTT 59.508 37.037 12.45 0.00 35.96 1.82
5271 8228 7.983484 ACGTAGAGATGGTATTTTCGGTAAAAT 59.017 33.333 0.00 0.00 45.21 1.82
5305 8262 2.948979 TGAACGACAAATTTCTGCACCT 59.051 40.909 0.00 0.00 0.00 4.00
5344 8301 7.531716 CAAGCATACCAATTTGCAAAATCAAT 58.468 30.769 17.19 3.96 41.35 2.57
5435 8393 8.020819 CGTCTTTTCTGATTTTATTAGTGGCAA 58.979 33.333 0.00 0.00 0.00 4.52
5524 8482 1.367195 GTGTTTCAACCACGACGCG 60.367 57.895 3.53 3.53 0.00 6.01
5561 8520 1.529010 TGTGCTGCTTCTTGGGTGG 60.529 57.895 0.00 0.00 0.00 4.61
5565 8524 0.315251 GCTGCTTCTTGGGTGGTTTC 59.685 55.000 0.00 0.00 0.00 2.78
5616 8579 6.869913 AGACATTATTTTGTTGCACCAGATTG 59.130 34.615 0.00 0.00 0.00 2.67
5630 8593 2.031420 CCAGATTGCAGTCATATTGCCG 60.031 50.000 12.16 0.00 40.81 5.69
5634 8597 0.829990 TGCAGTCATATTGCCGAGGA 59.170 50.000 0.00 0.00 40.81 3.71
5635 8598 1.202568 TGCAGTCATATTGCCGAGGAG 60.203 52.381 0.00 0.00 40.81 3.69
5636 8599 1.069204 GCAGTCATATTGCCGAGGAGA 59.931 52.381 0.00 0.00 35.54 3.71
5658 8621 0.098376 GCTACAATGCTGCAGAGTGC 59.902 55.000 20.43 2.64 45.29 4.40
5659 8622 0.731417 CTACAATGCTGCAGAGTGCC 59.269 55.000 20.43 0.00 44.23 5.01
5662 8625 0.601558 CAATGCTGCAGAGTGCCTTT 59.398 50.000 20.43 0.57 44.23 3.11
5665 8628 0.466007 TGCTGCAGAGTGCCTTTTGA 60.466 50.000 20.43 0.00 44.23 2.69
5687 8650 1.211969 GGAGCTTGCAGTGCATGTG 59.788 57.895 26.35 17.44 38.76 3.21
5694 8657 2.019948 TGCAGTGCATGTGAGATCTC 57.980 50.000 15.37 16.21 31.71 2.75
5699 8662 3.070590 CAGTGCATGTGAGATCTCCCATA 59.929 47.826 18.73 3.73 0.00 2.74
5700 8663 3.070734 AGTGCATGTGAGATCTCCCATAC 59.929 47.826 18.73 14.48 0.00 2.39
5728 8694 9.614792 AATGTTGTAATTATGTTCTACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
5729 8695 7.562135 TGTTGTAATTATGTTCTACTCCCTCC 58.438 38.462 0.00 0.00 0.00 4.30
5730 8696 6.401047 TGTAATTATGTTCTACTCCCTCCG 57.599 41.667 0.00 0.00 0.00 4.63
5731 8697 5.895534 TGTAATTATGTTCTACTCCCTCCGT 59.104 40.000 0.00 0.00 0.00 4.69
5732 8698 5.952347 AATTATGTTCTACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
5733 8699 5.952347 ATTATGTTCTACTCCCTCCGTTT 57.048 39.130 0.00 0.00 0.00 3.60
5734 8700 3.889520 ATGTTCTACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
5735 8701 2.885616 TGTTCTACTCCCTCCGTTTCT 58.114 47.619 0.00 0.00 0.00 2.52
5736 8702 4.038271 TGTTCTACTCCCTCCGTTTCTA 57.962 45.455 0.00 0.00 0.00 2.10
5737 8703 4.410099 TGTTCTACTCCCTCCGTTTCTAA 58.590 43.478 0.00 0.00 0.00 2.10
5738 8704 4.834496 TGTTCTACTCCCTCCGTTTCTAAA 59.166 41.667 0.00 0.00 0.00 1.85
5739 8705 5.482878 TGTTCTACTCCCTCCGTTTCTAAAT 59.517 40.000 0.00 0.00 0.00 1.40
5740 8706 6.664816 TGTTCTACTCCCTCCGTTTCTAAATA 59.335 38.462 0.00 0.00 0.00 1.40
5741 8707 7.343833 TGTTCTACTCCCTCCGTTTCTAAATAT 59.656 37.037 0.00 0.00 0.00 1.28
5742 8708 8.854117 GTTCTACTCCCTCCGTTTCTAAATATA 58.146 37.037 0.00 0.00 0.00 0.86
5743 8709 9.425248 TTCTACTCCCTCCGTTTCTAAATATAA 57.575 33.333 0.00 0.00 0.00 0.98
5744 8710 9.075678 TCTACTCCCTCCGTTTCTAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
5745 8711 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
5746 8712 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
5747 8713 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
5748 8714 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
5749 8715 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
5750 8716 9.392259 CCCTCCGTTTCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
5822 8788 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5823 8789 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
5824 8790 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
5825 8791 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
5826 8792 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
5827 8793 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
5828 8794 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
5829 8795 4.952262 TCACTCATTTTGCTCTGTATGC 57.048 40.909 0.00 0.00 0.00 3.14
5830 8796 4.325972 TCACTCATTTTGCTCTGTATGCA 58.674 39.130 0.00 0.00 38.80 3.96
5831 8797 4.761227 TCACTCATTTTGCTCTGTATGCAA 59.239 37.500 0.00 0.00 46.90 4.08
5841 8807 7.677454 TTGCTCTGTATGCAATCCATATTAG 57.323 36.000 0.00 0.00 44.24 1.73
5842 8808 6.175471 TGCTCTGTATGCAATCCATATTAGG 58.825 40.000 0.00 0.00 38.60 2.69
5843 8809 6.013466 TGCTCTGTATGCAATCCATATTAGGA 60.013 38.462 0.00 0.00 38.60 2.94
5855 8821 6.485388 TCCATATTAGGATGTACTCCCTCT 57.515 41.667 9.41 3.26 46.27 3.69
5856 8822 6.256819 TCCATATTAGGATGTACTCCCTCTG 58.743 44.000 9.41 5.10 46.27 3.35
5857 8823 6.019748 CCATATTAGGATGTACTCCCTCTGT 58.980 44.000 9.41 2.11 46.27 3.41
5858 8824 7.019254 TCCATATTAGGATGTACTCCCTCTGTA 59.981 40.741 9.41 3.82 46.27 2.74
5859 8825 7.674348 CCATATTAGGATGTACTCCCTCTGTAA 59.326 40.741 9.41 1.16 46.27 2.41
5860 8826 6.980416 ATTAGGATGTACTCCCTCTGTAAC 57.020 41.667 9.41 0.00 46.27 2.50
5861 8827 3.644335 AGGATGTACTCCCTCTGTAACC 58.356 50.000 7.50 0.00 46.27 2.85
5862 8828 3.272551 AGGATGTACTCCCTCTGTAACCT 59.727 47.826 7.50 0.00 46.27 3.50
5863 8829 4.481280 AGGATGTACTCCCTCTGTAACCTA 59.519 45.833 7.50 0.00 46.27 3.08
5864 8830 4.583907 GGATGTACTCCCTCTGTAACCTAC 59.416 50.000 0.00 0.00 38.19 3.18
5865 8831 4.942363 TGTACTCCCTCTGTAACCTACT 57.058 45.455 0.00 0.00 0.00 2.57
5866 8832 5.266709 TGTACTCCCTCTGTAACCTACTT 57.733 43.478 0.00 0.00 0.00 2.24
5867 8833 5.259632 TGTACTCCCTCTGTAACCTACTTC 58.740 45.833 0.00 0.00 0.00 3.01
5868 8834 3.710724 ACTCCCTCTGTAACCTACTTCC 58.289 50.000 0.00 0.00 0.00 3.46
5869 8835 3.337301 ACTCCCTCTGTAACCTACTTCCT 59.663 47.826 0.00 0.00 0.00 3.36
5870 8836 3.955551 CTCCCTCTGTAACCTACTTCCTC 59.044 52.174 0.00 0.00 0.00 3.71
5871 8837 3.032459 CCCTCTGTAACCTACTTCCTCC 58.968 54.545 0.00 0.00 0.00 4.30
5872 8838 2.688958 CCTCTGTAACCTACTTCCTCCG 59.311 54.545 0.00 0.00 0.00 4.63
5873 8839 3.354467 CTCTGTAACCTACTTCCTCCGT 58.646 50.000 0.00 0.00 0.00 4.69
5874 8840 3.762823 CTCTGTAACCTACTTCCTCCGTT 59.237 47.826 0.00 0.00 0.00 4.44
5875 8841 3.760684 TCTGTAACCTACTTCCTCCGTTC 59.239 47.826 0.00 0.00 0.00 3.95
5876 8842 2.827921 TGTAACCTACTTCCTCCGTTCC 59.172 50.000 0.00 0.00 0.00 3.62
5877 8843 0.893447 AACCTACTTCCTCCGTTCCG 59.107 55.000 0.00 0.00 0.00 4.30
5878 8844 0.038744 ACCTACTTCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
5879 8845 1.180029 CCTACTTCCTCCGTTCCGAA 58.820 55.000 0.00 0.00 0.00 4.30
5880 8846 1.755380 CCTACTTCCTCCGTTCCGAAT 59.245 52.381 0.00 0.00 0.00 3.34
5881 8847 2.167900 CCTACTTCCTCCGTTCCGAATT 59.832 50.000 0.00 0.00 0.00 2.17
5882 8848 3.382546 CCTACTTCCTCCGTTCCGAATTA 59.617 47.826 0.00 0.00 0.00 1.40
5883 8849 3.242549 ACTTCCTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
5884 8850 2.830321 ACTTCCTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
5885 8851 3.260128 ACTTCCTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
5886 8852 3.241067 TCCTCCGTTCCGAATTACTTG 57.759 47.619 0.00 0.00 0.00 3.16
5887 8853 2.564062 TCCTCCGTTCCGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
5888 8854 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5889 8855 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
5890 8856 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
5891 8857 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
5892 8858 2.156117 CGTTCCGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 35.93 4.85
5893 8859 3.363182 CGTTCCGAATTACTTGTCGCAAA 60.363 43.478 0.00 0.00 35.93 3.68
5894 8860 4.529446 GTTCCGAATTACTTGTCGCAAAA 58.471 39.130 0.00 0.00 35.93 2.44
5895 8861 4.815040 TCCGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 35.93 1.94
5896 8862 5.365403 TCCGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 35.93 1.82
5897 8863 5.150683 TCCGAATTACTTGTCGCAAAAATG 58.849 37.500 0.00 0.00 35.93 2.32
5898 8864 4.323336 CCGAATTACTTGTCGCAAAAATGG 59.677 41.667 0.00 0.00 35.93 3.16
5899 8865 5.150683 CGAATTACTTGTCGCAAAAATGGA 58.849 37.500 0.00 0.00 0.00 3.41
5900 8866 5.799936 CGAATTACTTGTCGCAAAAATGGAT 59.200 36.000 0.00 0.00 0.00 3.41
5901 8867 6.237279 CGAATTACTTGTCGCAAAAATGGATG 60.237 38.462 0.00 0.00 0.00 3.51
5902 8868 5.446143 TTACTTGTCGCAAAAATGGATGT 57.554 34.783 0.00 0.00 0.00 3.06
5903 8869 6.561737 TTACTTGTCGCAAAAATGGATGTA 57.438 33.333 0.00 0.00 0.00 2.29
5904 8870 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
5905 8871 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
5906 8872 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
5907 8873 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
5908 8874 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
5909 8875 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
5910 8876 6.992123 TGTCGCAAAAATGGATGTATCTAGAT 59.008 34.615 10.73 10.73 0.00 1.98
5911 8877 8.147704 TGTCGCAAAAATGGATGTATCTAGATA 58.852 33.333 8.44 8.44 0.00 1.98
5912 8878 9.155975 GTCGCAAAAATGGATGTATCTAGATAT 57.844 33.333 15.43 1.62 0.00 1.63
5941 8907 6.259550 AGTTCAAGGTACATTCATTTCTGC 57.740 37.500 0.00 0.00 0.00 4.26
5942 8908 4.944962 TCAAGGTACATTCATTTCTGCG 57.055 40.909 0.00 0.00 0.00 5.18
5943 8909 4.574892 TCAAGGTACATTCATTTCTGCGA 58.425 39.130 0.00 0.00 0.00 5.10
5944 8910 4.391830 TCAAGGTACATTCATTTCTGCGAC 59.608 41.667 0.00 0.00 0.00 5.19
5945 8911 2.930040 AGGTACATTCATTTCTGCGACG 59.070 45.455 0.00 0.00 0.00 5.12
5946 8912 2.671396 GGTACATTCATTTCTGCGACGT 59.329 45.455 0.00 0.00 0.00 4.34
5947 8913 2.880822 ACATTCATTTCTGCGACGTG 57.119 45.000 0.00 0.00 0.00 4.49
5948 8914 2.143122 ACATTCATTTCTGCGACGTGT 58.857 42.857 0.00 0.00 0.00 4.49
5949 8915 3.322369 ACATTCATTTCTGCGACGTGTA 58.678 40.909 0.00 0.00 0.00 2.90
5950 8916 3.743911 ACATTCATTTCTGCGACGTGTAA 59.256 39.130 0.00 0.00 0.00 2.41
5951 8917 4.391830 ACATTCATTTCTGCGACGTGTAAT 59.608 37.500 0.00 0.00 0.00 1.89
5952 8918 5.106712 ACATTCATTTCTGCGACGTGTAATT 60.107 36.000 0.00 0.00 0.00 1.40
5953 8919 5.351233 TTCATTTCTGCGACGTGTAATTT 57.649 34.783 0.00 0.00 0.00 1.82
5954 8920 4.707563 TCATTTCTGCGACGTGTAATTTG 58.292 39.130 0.00 0.00 0.00 2.32
5955 8921 4.449405 TCATTTCTGCGACGTGTAATTTGA 59.551 37.500 0.00 0.00 0.00 2.69
5956 8922 4.797693 TTTCTGCGACGTGTAATTTGAA 57.202 36.364 0.00 0.00 0.00 2.69
5957 8923 4.797693 TTCTGCGACGTGTAATTTGAAA 57.202 36.364 0.00 0.00 0.00 2.69
5958 8924 4.123276 TCTGCGACGTGTAATTTGAAAC 57.877 40.909 0.00 0.00 0.00 2.78
5959 8925 2.893837 TGCGACGTGTAATTTGAAACG 58.106 42.857 0.00 0.00 41.64 3.60
5960 8926 2.227556 GCGACGTGTAATTTGAAACGG 58.772 47.619 0.00 0.00 40.25 4.44
5961 8927 2.096811 GCGACGTGTAATTTGAAACGGA 60.097 45.455 0.00 0.00 40.25 4.69
5962 8928 3.717830 CGACGTGTAATTTGAAACGGAG 58.282 45.455 0.00 0.00 40.25 4.63
5963 8929 3.422603 CGACGTGTAATTTGAAACGGAGG 60.423 47.826 0.00 0.00 40.25 4.30
5964 8930 2.809696 ACGTGTAATTTGAAACGGAGGG 59.190 45.455 0.00 0.00 40.25 4.30
5965 8931 3.068560 CGTGTAATTTGAAACGGAGGGA 58.931 45.455 0.00 0.00 32.55 4.20
5966 8932 3.499157 CGTGTAATTTGAAACGGAGGGAA 59.501 43.478 0.00 0.00 32.55 3.97
5967 8933 4.155280 CGTGTAATTTGAAACGGAGGGAAT 59.845 41.667 0.00 0.00 32.55 3.01
5968 8934 5.352016 CGTGTAATTTGAAACGGAGGGAATA 59.648 40.000 0.00 0.00 32.55 1.75
5969 8935 6.128227 CGTGTAATTTGAAACGGAGGGAATAA 60.128 38.462 0.00 0.00 32.55 1.40
5970 8936 7.414762 CGTGTAATTTGAAACGGAGGGAATAAT 60.415 37.037 0.00 0.00 32.55 1.28
5971 8937 8.895737 GTGTAATTTGAAACGGAGGGAATAATA 58.104 33.333 0.00 0.00 0.00 0.98
5972 8938 9.635404 TGTAATTTGAAACGGAGGGAATAATAT 57.365 29.630 0.00 0.00 0.00 1.28
5977 8943 9.555727 TTTGAAACGGAGGGAATAATATAAGAG 57.444 33.333 0.00 0.00 0.00 2.85
5978 8944 8.258850 TGAAACGGAGGGAATAATATAAGAGT 57.741 34.615 0.00 0.00 0.00 3.24
5979 8945 8.148351 TGAAACGGAGGGAATAATATAAGAGTG 58.852 37.037 0.00 0.00 0.00 3.51
5980 8946 7.613551 AACGGAGGGAATAATATAAGAGTGT 57.386 36.000 0.00 0.00 0.00 3.55
5981 8947 7.613551 ACGGAGGGAATAATATAAGAGTGTT 57.386 36.000 0.00 0.00 0.00 3.32
5982 8948 8.030913 ACGGAGGGAATAATATAAGAGTGTTT 57.969 34.615 0.00 0.00 0.00 2.83
5983 8949 9.151177 ACGGAGGGAATAATATAAGAGTGTTTA 57.849 33.333 0.00 0.00 0.00 2.01
5984 8950 9.640963 CGGAGGGAATAATATAAGAGTGTTTAG 57.359 37.037 0.00 0.00 0.00 1.85
6000 8966 9.862371 AGAGTGTTTAGATCACTACATGTTTAG 57.138 33.333 2.30 0.00 44.68 1.85
6001 8967 9.856488 GAGTGTTTAGATCACTACATGTTTAGA 57.144 33.333 2.30 0.00 44.68 2.10
6028 8994 7.304497 ACTAAAGTAGTGATCCAAACACTCT 57.696 36.000 0.00 0.00 45.58 3.24
6029 8995 7.379750 ACTAAAGTAGTGATCCAAACACTCTC 58.620 38.462 0.00 0.00 45.58 3.20
6030 8996 5.808366 AAGTAGTGATCCAAACACTCTCA 57.192 39.130 0.00 0.00 45.58 3.27
6031 8997 6.365970 AAGTAGTGATCCAAACACTCTCAT 57.634 37.500 0.00 0.00 45.58 2.90
6032 8998 7.482169 AAGTAGTGATCCAAACACTCTCATA 57.518 36.000 0.00 0.00 45.58 2.15
6033 8999 7.667575 AGTAGTGATCCAAACACTCTCATAT 57.332 36.000 0.00 0.00 45.58 1.78
6034 9000 8.083828 AGTAGTGATCCAAACACTCTCATATT 57.916 34.615 0.00 0.00 45.58 1.28
6035 9001 9.201989 AGTAGTGATCCAAACACTCTCATATTA 57.798 33.333 0.00 0.00 45.58 0.98
6036 9002 9.469807 GTAGTGATCCAAACACTCTCATATTAG 57.530 37.037 0.00 0.00 45.58 1.73
6037 9003 8.083828 AGTGATCCAAACACTCTCATATTAGT 57.916 34.615 0.00 0.00 43.84 2.24
6038 9004 8.543774 AGTGATCCAAACACTCTCATATTAGTT 58.456 33.333 0.00 0.00 43.84 2.24
6039 9005 9.167311 GTGATCCAAACACTCTCATATTAGTTT 57.833 33.333 0.00 0.00 35.66 2.66
6042 9008 8.697846 TCCAAACACTCTCATATTAGTTTACG 57.302 34.615 0.00 0.00 0.00 3.18
6043 9009 7.762615 TCCAAACACTCTCATATTAGTTTACGG 59.237 37.037 0.00 0.00 0.00 4.02
6044 9010 7.762615 CCAAACACTCTCATATTAGTTTACGGA 59.237 37.037 0.00 0.00 0.00 4.69
6045 9011 8.808529 CAAACACTCTCATATTAGTTTACGGAG 58.191 37.037 0.00 0.00 0.00 4.63
6076 9042 3.444742 TGCTAGTGGATGGAAGCAAATTG 59.555 43.478 0.00 0.00 41.74 2.32
6091 9057 0.452987 AATTGGCAGCATGTACGCAG 59.547 50.000 0.00 0.00 39.31 5.18
6102 9068 4.389992 AGCATGTACGCAGATGTTATATGC 59.610 41.667 12.92 12.92 43.66 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.005450 TGGCTAGTTTCCAACCCCATC 59.995 52.381 0.00 0.00 0.00 3.51
106 111 9.467258 CAGCTTTCAATTTCAATTTCAGACTTA 57.533 29.630 0.00 0.00 0.00 2.24
129 134 0.523519 GTTGCCTTTCTACCAGCAGC 59.476 55.000 0.00 0.00 36.44 5.25
151 156 1.369625 GTGATGCCCTAACTGTTCGG 58.630 55.000 4.20 4.20 0.00 4.30
170 175 2.805671 GTTTGCATTTCTTTTTCCGGGG 59.194 45.455 0.00 0.00 0.00 5.73
176 181 5.355596 TGATGACGGTTTGCATTTCTTTTT 58.644 33.333 0.00 0.00 0.00 1.94
197 202 2.722071 GGTTTGCGTTTCGACAATTGA 58.278 42.857 13.59 0.00 0.00 2.57
223 228 1.464608 CGCCGACTTCATCACACATTT 59.535 47.619 0.00 0.00 0.00 2.32
233 238 3.450578 GGTTTATGTATCGCCGACTTCA 58.549 45.455 0.00 0.00 0.00 3.02
237 242 1.843992 ACGGTTTATGTATCGCCGAC 58.156 50.000 8.31 0.00 44.57 4.79
241 246 2.849502 GCTGCAACGGTTTATGTATCGC 60.850 50.000 0.00 0.00 0.00 4.58
245 250 3.546002 GTTGCTGCAACGGTTTATGTA 57.454 42.857 27.40 0.00 34.63 2.29
364 369 2.036346 GGAGGGCCAAATGTGATATTGC 59.964 50.000 6.18 0.00 0.00 3.56
367 372 3.205056 TCAAGGAGGGCCAAATGTGATAT 59.795 43.478 6.18 0.00 36.29 1.63
413 418 0.821517 ATCACATGGCATGTTGCTGG 59.178 50.000 29.57 18.04 44.28 4.85
422 427 3.281158 CACACCAATAGATCACATGGCA 58.719 45.455 9.77 0.00 36.37 4.92
437 442 2.863346 CGAGGAACCGGACACACCA 61.863 63.158 9.46 0.00 38.90 4.17
442 447 1.747355 GTTAGATCGAGGAACCGGACA 59.253 52.381 9.46 0.00 0.00 4.02
576 696 9.883142 ACAAACCAAAGAGATTTTTATTCACAA 57.117 25.926 0.00 0.00 0.00 3.33
584 704 9.599866 CCTTTCTTACAAACCAAAGAGATTTTT 57.400 29.630 0.00 0.00 33.49 1.94
585 705 8.977412 TCCTTTCTTACAAACCAAAGAGATTTT 58.023 29.630 0.00 0.00 33.49 1.82
586 706 8.533569 TCCTTTCTTACAAACCAAAGAGATTT 57.466 30.769 0.00 0.00 33.49 2.17
587 707 8.712228 ATCCTTTCTTACAAACCAAAGAGATT 57.288 30.769 0.00 0.00 33.49 2.40
588 708 8.712228 AATCCTTTCTTACAAACCAAAGAGAT 57.288 30.769 0.00 0.00 33.49 2.75
589 709 7.777910 TGAATCCTTTCTTACAAACCAAAGAGA 59.222 33.333 0.00 0.00 33.49 3.10
590 710 7.940850 TGAATCCTTTCTTACAAACCAAAGAG 58.059 34.615 0.00 0.00 33.49 2.85
591 711 7.889873 TGAATCCTTTCTTACAAACCAAAGA 57.110 32.000 0.00 0.00 32.78 2.52
712 1005 6.885918 TGTCATGCATCTCATTCTAGGAAAAA 59.114 34.615 0.00 0.00 31.79 1.94
802 1110 3.650950 GGGGGCAGAGCAAGTGGA 61.651 66.667 0.00 0.00 0.00 4.02
912 1380 3.491619 GCGATGAGGACTAAAGAGATGCA 60.492 47.826 0.00 0.00 0.00 3.96
916 1384 1.676529 CGGCGATGAGGACTAAAGAGA 59.323 52.381 0.00 0.00 0.00 3.10
1152 1626 4.760047 GATGACGGTGGCTGCGGT 62.760 66.667 0.00 0.00 0.00 5.68
1211 1685 5.185249 GGGAAATAAGGAACCTTGAAGAACC 59.815 44.000 15.37 10.54 37.47 3.62
1248 1722 0.679960 AGGTATTTCGCACAAGGGGC 60.680 55.000 0.00 0.00 0.00 5.80
1391 1887 0.605319 TGCACGGCTTAACTCCAAGG 60.605 55.000 0.00 0.00 0.00 3.61
1421 1918 2.293122 TGCACTGTTACTTTGATGGTGC 59.707 45.455 0.00 0.00 45.63 5.01
1427 1924 4.550577 CACACATGCACTGTTACTTTGA 57.449 40.909 0.00 0.00 35.29 2.69
1675 4541 0.843984 GGTATACCCACATGGCCACT 59.156 55.000 8.16 0.00 37.83 4.00
1801 4667 5.472301 AGATGTATTTTGTCAATCCCCCT 57.528 39.130 0.00 0.00 0.00 4.79
1865 4735 2.456119 GGTTGCGACATGAGAGCCG 61.456 63.158 6.39 0.00 0.00 5.52
1881 4751 7.309377 CCAAAATTGATCATCTAACACACAGGT 60.309 37.037 0.00 0.00 0.00 4.00
2071 4944 7.322664 GGATCTTAAATTGATTTGCAGGAACA 58.677 34.615 0.00 0.00 0.00 3.18
2184 5057 1.076549 GCTTCCATTCCCACACCCA 59.923 57.895 0.00 0.00 0.00 4.51
2351 5227 4.675510 CATGTGCCTTGATAAATGGTCAC 58.324 43.478 0.00 0.00 34.03 3.67
2355 5231 3.804786 TGCATGTGCCTTGATAAATGG 57.195 42.857 2.07 0.00 41.18 3.16
2368 5244 1.399440 CCCTCACGATCTTTGCATGTG 59.601 52.381 0.00 0.00 0.00 3.21
2584 5464 3.709653 TGACTACCAGTATAAGCCAAGGG 59.290 47.826 0.00 0.00 0.00 3.95
2643 5527 3.594134 GGATGTGCTAGCATCTATCCAC 58.406 50.000 32.23 17.49 43.41 4.02
2741 5625 4.764172 AGCAGCTAAACCAATGTCTAGAG 58.236 43.478 0.00 0.00 0.00 2.43
2756 5640 2.086869 GATTGCCAAACAGAGCAGCTA 58.913 47.619 0.00 0.00 40.73 3.32
2865 5749 5.572896 CCTCAAAATGCGTAAAAGGTTCATC 59.427 40.000 0.00 0.00 0.00 2.92
2912 5796 4.333926 CCCTTAAGCATACTCTTTGACAGC 59.666 45.833 0.00 0.00 0.00 4.40
3100 6010 0.378962 TCGTGGGCAAACAAAGAACG 59.621 50.000 0.00 0.00 0.00 3.95
3116 6026 0.889186 GTTCAAGCACCATGGGTCGT 60.889 55.000 18.09 2.21 31.02 4.34
3151 6061 2.113139 AGGGTTGGCACACCGAAG 59.887 61.111 11.12 0.00 39.29 3.79
3230 6140 0.661020 AGTGCCGTAAGTGTGCAAAC 59.339 50.000 0.00 0.00 36.65 2.93
3231 6141 0.660488 CAGTGCCGTAAGTGTGCAAA 59.340 50.000 0.00 0.00 36.65 3.68
3232 6142 0.179070 TCAGTGCCGTAAGTGTGCAA 60.179 50.000 0.00 0.00 36.65 4.08
3234 6144 0.721718 GATCAGTGCCGTAAGTGTGC 59.278 55.000 0.00 0.00 0.00 4.57
3235 6145 2.078849 TGATCAGTGCCGTAAGTGTG 57.921 50.000 0.00 0.00 0.00 3.82
3236 6146 4.342378 AGATATGATCAGTGCCGTAAGTGT 59.658 41.667 0.09 0.00 0.00 3.55
3237 6147 4.876125 AGATATGATCAGTGCCGTAAGTG 58.124 43.478 0.09 0.00 0.00 3.16
3238 6148 4.830046 AGAGATATGATCAGTGCCGTAAGT 59.170 41.667 0.09 0.00 0.00 2.24
3240 6150 5.791336 AAGAGATATGATCAGTGCCGTAA 57.209 39.130 0.09 0.00 0.00 3.18
3253 6163 8.613060 TGCTCTAAATGCCTTAAAGAGATATG 57.387 34.615 14.37 0.00 36.60 1.78
3254 6164 9.632638 TTTGCTCTAAATGCCTTAAAGAGATAT 57.367 29.630 14.37 0.00 36.60 1.63
3388 6299 4.082571 GCTTGGACTACATCTGCACAAATT 60.083 41.667 0.00 0.00 0.00 1.82
3392 6303 1.347378 TGCTTGGACTACATCTGCACA 59.653 47.619 0.00 0.00 0.00 4.57
3533 6444 5.670485 ACAACCAACCTGGAAAATTTTCTC 58.330 37.500 25.86 17.75 40.96 2.87
3691 6606 7.953493 AGTTTTTCCCCCTTACATAAAGATGAA 59.047 33.333 0.00 0.00 37.38 2.57
3710 6625 5.990408 TCTTTCAGCGAGATTGAGTTTTTC 58.010 37.500 0.00 0.00 0.00 2.29
3777 6692 9.911788 ATGATAGATGGTAGAACAAAATTCACT 57.088 29.630 0.00 0.00 0.00 3.41
3884 6799 8.682936 ATAACTTCTGCAAATAGAAATCCGAT 57.317 30.769 0.00 0.00 36.34 4.18
3926 6841 8.615360 TTGGATTTCCCATTTAATACATCCAA 57.385 30.769 6.25 6.25 46.10 3.53
4002 6919 6.384178 TGACAACGTAAATATCTGTCAACG 57.616 37.500 13.11 0.00 42.43 4.10
4095 7012 8.608185 ATGTTACCATAATCCCTGAACAAAAT 57.392 30.769 0.00 0.00 0.00 1.82
4158 7075 6.310149 AGAAGATTTGTCAAGAAGGGATTGT 58.690 36.000 0.00 0.00 0.00 2.71
4164 7081 6.920210 GGAAACAAGAAGATTTGTCAAGAAGG 59.080 38.462 0.00 0.00 40.24 3.46
4282 7201 4.989168 ACAGTGTCCAACGAGAAGAAATAC 59.011 41.667 0.00 0.00 0.00 1.89
4666 7592 7.466050 GCTGACAGTTGCATACTATTAAGGAAC 60.466 40.741 3.99 0.00 34.56 3.62
4703 7631 4.022068 ACGGAACAATCAACAAATCATGCT 60.022 37.500 0.00 0.00 0.00 3.79
4724 7652 7.750458 ACAAAAGATAATGTCAGCAAACATACG 59.250 33.333 4.61 0.00 38.92 3.06
4732 7660 5.069318 TCCACACAAAAGATAATGTCAGCA 58.931 37.500 0.00 0.00 0.00 4.41
4799 7727 6.869206 AGTCTATAACTCCAAACTAAGGCA 57.131 37.500 0.00 0.00 30.02 4.75
4824 7764 9.797556 GGATTGGAACCATATTTTGTTTAGTAC 57.202 33.333 0.00 0.00 0.00 2.73
4862 7803 4.082245 GCAGGGCAATTTTAGAAGCTTGTA 60.082 41.667 2.10 0.00 0.00 2.41
4953 7902 6.600350 CGTCATATAAGCTGTAGACACGTAT 58.400 40.000 0.00 0.00 0.00 3.06
5147 8104 3.188100 TTCGCGGCAGAGCATTCG 61.188 61.111 6.13 0.00 36.85 3.34
5185 8142 9.665719 TTGACAAGAAGTGAAAGCATATGTATA 57.334 29.630 4.29 0.00 0.00 1.47
5209 8166 5.107133 GCAGAAATCAAGGAACCATGATTG 58.893 41.667 20.03 12.46 42.14 2.67
5233 8190 3.844577 TCTCTACGTTAGAAGCACACC 57.155 47.619 0.00 0.00 33.75 4.16
5262 8219 9.562583 GTTCATTAAACATTGCTATTTTACCGA 57.437 29.630 0.00 0.00 37.82 4.69
5271 8228 9.469807 AAATTTGTCGTTCATTAAACATTGCTA 57.530 25.926 0.00 0.00 37.77 3.49
5284 8241 2.948979 AGGTGCAGAAATTTGTCGTTCA 59.051 40.909 0.00 0.00 0.00 3.18
5344 8301 9.845740 ATGACATGCATGGTTAGTATAGTAAAA 57.154 29.630 29.41 0.00 35.42 1.52
5356 8313 6.546772 TCACAACATATATGACATGCATGGTT 59.453 34.615 29.41 17.57 37.87 3.67
5357 8314 6.016860 GTCACAACATATATGACATGCATGGT 60.017 38.462 29.41 17.25 41.94 3.55
5387 8344 9.444600 AGACGGTAACACAAAGAAATATATTGT 57.555 29.630 0.00 0.00 37.76 2.71
5446 8404 6.815089 TGGTTGAAACAAAATAATCACTGCT 58.185 32.000 0.00 0.00 0.00 4.24
5462 8420 8.970020 AGAAGCATATAATGACAATGGTTGAAA 58.030 29.630 6.94 0.00 40.38 2.69
5481 8439 8.349983 ACAACGTTTCTACAATAAAAGAAGCAT 58.650 29.630 0.00 0.00 33.89 3.79
5519 8477 1.740043 GACCGAAGCACATACGCGTC 61.740 60.000 18.63 0.00 37.09 5.19
5524 8482 2.742053 ACACATTGACCGAAGCACATAC 59.258 45.455 0.00 0.00 0.00 2.39
5616 8579 1.069204 TCTCCTCGGCAATATGACTGC 59.931 52.381 0.00 0.00 39.16 4.40
5622 8585 3.324846 TGTAGCATTCTCCTCGGCAATAT 59.675 43.478 0.00 0.00 0.00 1.28
5624 8587 1.486310 TGTAGCATTCTCCTCGGCAAT 59.514 47.619 0.00 0.00 0.00 3.56
5630 8593 2.290093 GCAGCATTGTAGCATTCTCCTC 59.710 50.000 0.00 0.00 36.85 3.71
5634 8597 2.943690 CTCTGCAGCATTGTAGCATTCT 59.056 45.455 9.47 0.00 37.01 2.40
5635 8598 2.681848 ACTCTGCAGCATTGTAGCATTC 59.318 45.455 9.47 0.00 37.01 2.67
5636 8599 2.422479 CACTCTGCAGCATTGTAGCATT 59.578 45.455 9.47 0.00 37.01 3.56
5658 8621 1.866853 GCAAGCTCCCGGTCAAAAGG 61.867 60.000 0.00 0.00 0.00 3.11
5659 8622 1.172180 TGCAAGCTCCCGGTCAAAAG 61.172 55.000 0.00 0.00 0.00 2.27
5662 8625 2.032528 CTGCAAGCTCCCGGTCAA 59.967 61.111 0.00 0.00 0.00 3.18
5723 8689 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
5724 8690 8.959705 AAAGACTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
5800 8766 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
5801 8767 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
5802 8768 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
5803 8769 7.011763 GCATACAGAGCAAAATGAGTGAATCTA 59.988 37.037 0.00 0.00 0.00 1.98
5804 8770 6.183360 GCATACAGAGCAAAATGAGTGAATCT 60.183 38.462 0.00 0.00 0.00 2.40
5805 8771 5.970023 GCATACAGAGCAAAATGAGTGAATC 59.030 40.000 0.00 0.00 0.00 2.52
5806 8772 5.416639 TGCATACAGAGCAAAATGAGTGAAT 59.583 36.000 0.00 0.00 39.39 2.57
5807 8773 4.761227 TGCATACAGAGCAAAATGAGTGAA 59.239 37.500 0.00 0.00 39.39 3.18
5808 8774 4.325972 TGCATACAGAGCAAAATGAGTGA 58.674 39.130 0.00 0.00 39.39 3.41
5809 8775 4.690184 TGCATACAGAGCAAAATGAGTG 57.310 40.909 0.00 0.00 39.39 3.51
5818 8784 6.013466 TCCTAATATGGATTGCATACAGAGCA 60.013 38.462 0.00 0.00 40.85 4.26
5819 8785 6.409704 TCCTAATATGGATTGCATACAGAGC 58.590 40.000 0.00 0.00 0.00 4.09
5820 8786 8.045507 ACATCCTAATATGGATTGCATACAGAG 58.954 37.037 0.00 0.00 43.79 3.35
5821 8787 7.921304 ACATCCTAATATGGATTGCATACAGA 58.079 34.615 0.00 0.00 43.79 3.41
5822 8788 9.102757 GTACATCCTAATATGGATTGCATACAG 57.897 37.037 0.00 1.66 43.79 2.74
5823 8789 8.825774 AGTACATCCTAATATGGATTGCATACA 58.174 33.333 0.00 0.00 43.79 2.29
5824 8790 9.319143 GAGTACATCCTAATATGGATTGCATAC 57.681 37.037 0.00 0.00 43.79 2.39
5825 8791 8.486210 GGAGTACATCCTAATATGGATTGCATA 58.514 37.037 0.00 0.00 43.79 3.14
5826 8792 7.341805 GGAGTACATCCTAATATGGATTGCAT 58.658 38.462 0.00 0.00 43.79 3.96
5827 8793 6.711277 GGAGTACATCCTAATATGGATTGCA 58.289 40.000 0.00 0.00 43.79 4.08
5842 8808 5.447757 AGTAGGTTACAGAGGGAGTACATC 58.552 45.833 0.00 0.00 0.00 3.06
5843 8809 5.469210 AGTAGGTTACAGAGGGAGTACAT 57.531 43.478 0.00 0.00 0.00 2.29
5844 8810 4.942363 AGTAGGTTACAGAGGGAGTACA 57.058 45.455 0.00 0.00 0.00 2.90
5845 8811 4.644234 GGAAGTAGGTTACAGAGGGAGTAC 59.356 50.000 0.00 0.00 0.00 2.73
5846 8812 4.543337 AGGAAGTAGGTTACAGAGGGAGTA 59.457 45.833 0.00 0.00 0.00 2.59
5847 8813 3.337301 AGGAAGTAGGTTACAGAGGGAGT 59.663 47.826 0.00 0.00 0.00 3.85
5848 8814 3.955551 GAGGAAGTAGGTTACAGAGGGAG 59.044 52.174 0.00 0.00 0.00 4.30
5849 8815 3.309701 GGAGGAAGTAGGTTACAGAGGGA 60.310 52.174 0.00 0.00 0.00 4.20
5850 8816 3.032459 GGAGGAAGTAGGTTACAGAGGG 58.968 54.545 0.00 0.00 0.00 4.30
5851 8817 2.688958 CGGAGGAAGTAGGTTACAGAGG 59.311 54.545 0.00 0.00 0.00 3.69
5852 8818 3.354467 ACGGAGGAAGTAGGTTACAGAG 58.646 50.000 0.00 0.00 0.00 3.35
5853 8819 3.446442 ACGGAGGAAGTAGGTTACAGA 57.554 47.619 0.00 0.00 0.00 3.41
5854 8820 3.119209 GGAACGGAGGAAGTAGGTTACAG 60.119 52.174 0.00 0.00 0.00 2.74
5855 8821 2.827921 GGAACGGAGGAAGTAGGTTACA 59.172 50.000 0.00 0.00 0.00 2.41
5856 8822 3.516981 GGAACGGAGGAAGTAGGTTAC 57.483 52.381 0.00 0.00 0.00 2.50
5872 8838 3.799137 TTGCGACAAGTAATTCGGAAC 57.201 42.857 0.00 0.00 40.13 3.62
5873 8839 4.815040 TTTTGCGACAAGTAATTCGGAA 57.185 36.364 0.00 0.00 42.78 4.30
5874 8840 4.815040 TTTTTGCGACAAGTAATTCGGA 57.185 36.364 0.00 0.00 35.73 4.55
5875 8841 4.323336 CCATTTTTGCGACAAGTAATTCGG 59.677 41.667 0.00 0.00 35.73 4.30
5876 8842 5.150683 TCCATTTTTGCGACAAGTAATTCG 58.849 37.500 0.00 0.00 38.31 3.34
5877 8843 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
5878 8844 6.454795 ACATCCATTTTTGCGACAAGTAATT 58.545 32.000 0.00 0.00 0.00 1.40
5879 8845 6.024552 ACATCCATTTTTGCGACAAGTAAT 57.975 33.333 0.00 0.00 0.00 1.89
5880 8846 5.446143 ACATCCATTTTTGCGACAAGTAA 57.554 34.783 0.00 0.00 0.00 2.24
5881 8847 6.597672 AGATACATCCATTTTTGCGACAAGTA 59.402 34.615 0.00 0.00 0.00 2.24
5882 8848 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
5883 8849 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
5884 8850 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
5885 8851 6.345298 TCTAGATACATCCATTTTTGCGACA 58.655 36.000 0.00 0.00 0.00 4.35
5886 8852 6.844696 TCTAGATACATCCATTTTTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
5915 8881 8.296713 GCAGAAATGAATGTACCTTGAACTAAA 58.703 33.333 0.00 0.00 0.00 1.85
5916 8882 7.360861 CGCAGAAATGAATGTACCTTGAACTAA 60.361 37.037 0.00 0.00 0.00 2.24
5917 8883 6.092122 CGCAGAAATGAATGTACCTTGAACTA 59.908 38.462 0.00 0.00 0.00 2.24
5918 8884 5.106555 CGCAGAAATGAATGTACCTTGAACT 60.107 40.000 0.00 0.00 0.00 3.01
5919 8885 5.088739 CGCAGAAATGAATGTACCTTGAAC 58.911 41.667 0.00 0.00 0.00 3.18
5920 8886 5.000591 TCGCAGAAATGAATGTACCTTGAA 58.999 37.500 0.00 0.00 0.00 2.69
5921 8887 4.391830 GTCGCAGAAATGAATGTACCTTGA 59.608 41.667 0.00 0.00 39.69 3.02
5922 8888 4.651994 GTCGCAGAAATGAATGTACCTTG 58.348 43.478 0.00 0.00 39.69 3.61
5923 8889 3.370978 CGTCGCAGAAATGAATGTACCTT 59.629 43.478 0.00 0.00 39.69 3.50
5924 8890 2.930040 CGTCGCAGAAATGAATGTACCT 59.070 45.455 0.00 0.00 39.69 3.08
5925 8891 2.671396 ACGTCGCAGAAATGAATGTACC 59.329 45.455 0.00 0.00 39.69 3.34
5926 8892 3.122948 ACACGTCGCAGAAATGAATGTAC 59.877 43.478 0.00 0.00 39.69 2.90
5927 8893 3.322369 ACACGTCGCAGAAATGAATGTA 58.678 40.909 0.00 0.00 39.69 2.29
5928 8894 2.143122 ACACGTCGCAGAAATGAATGT 58.857 42.857 0.00 0.00 39.69 2.71
5929 8895 2.880822 ACACGTCGCAGAAATGAATG 57.119 45.000 0.00 0.00 39.69 2.67
5930 8896 5.545658 AATTACACGTCGCAGAAATGAAT 57.454 34.783 0.00 0.00 39.69 2.57
5931 8897 5.050023 TCAAATTACACGTCGCAGAAATGAA 60.050 36.000 0.00 0.00 39.69 2.57
5932 8898 4.449405 TCAAATTACACGTCGCAGAAATGA 59.551 37.500 0.00 0.00 39.69 2.57
5933 8899 4.707563 TCAAATTACACGTCGCAGAAATG 58.292 39.130 0.00 0.00 39.69 2.32
5934 8900 5.351233 TTCAAATTACACGTCGCAGAAAT 57.649 34.783 0.00 0.00 39.69 2.17
5935 8901 4.797693 TTCAAATTACACGTCGCAGAAA 57.202 36.364 0.00 0.00 39.69 2.52
5936 8902 4.520078 GTTTCAAATTACACGTCGCAGAA 58.480 39.130 0.00 0.00 39.69 3.02
5937 8903 3.362207 CGTTTCAAATTACACGTCGCAGA 60.362 43.478 0.00 0.00 0.00 4.26
5938 8904 2.894000 CGTTTCAAATTACACGTCGCAG 59.106 45.455 0.00 0.00 0.00 5.18
5939 8905 2.348685 CCGTTTCAAATTACACGTCGCA 60.349 45.455 0.00 0.00 0.00 5.10
5940 8906 2.096811 TCCGTTTCAAATTACACGTCGC 60.097 45.455 0.00 0.00 0.00 5.19
5941 8907 3.422603 CCTCCGTTTCAAATTACACGTCG 60.423 47.826 0.00 0.00 0.00 5.12
5942 8908 3.120442 CCCTCCGTTTCAAATTACACGTC 60.120 47.826 0.00 0.00 0.00 4.34
5943 8909 2.809696 CCCTCCGTTTCAAATTACACGT 59.190 45.455 0.00 0.00 0.00 4.49
5944 8910 3.068560 TCCCTCCGTTTCAAATTACACG 58.931 45.455 0.00 0.00 0.00 4.49
5945 8911 5.638596 ATTCCCTCCGTTTCAAATTACAC 57.361 39.130 0.00 0.00 0.00 2.90
5946 8912 7.948034 ATTATTCCCTCCGTTTCAAATTACA 57.052 32.000 0.00 0.00 0.00 2.41
5951 8917 9.555727 CTCTTATATTATTCCCTCCGTTTCAAA 57.444 33.333 0.00 0.00 0.00 2.69
5952 8918 8.711170 ACTCTTATATTATTCCCTCCGTTTCAA 58.289 33.333 0.00 0.00 0.00 2.69
5953 8919 8.148351 CACTCTTATATTATTCCCTCCGTTTCA 58.852 37.037 0.00 0.00 0.00 2.69
5954 8920 8.148999 ACACTCTTATATTATTCCCTCCGTTTC 58.851 37.037 0.00 0.00 0.00 2.78
5955 8921 8.030913 ACACTCTTATATTATTCCCTCCGTTT 57.969 34.615 0.00 0.00 0.00 3.60
5956 8922 7.613551 ACACTCTTATATTATTCCCTCCGTT 57.386 36.000 0.00 0.00 0.00 4.44
5957 8923 7.613551 AACACTCTTATATTATTCCCTCCGT 57.386 36.000 0.00 0.00 0.00 4.69
5958 8924 9.640963 CTAAACACTCTTATATTATTCCCTCCG 57.359 37.037 0.00 0.00 0.00 4.63
5974 8940 9.862371 CTAAACATGTAGTGATCTAAACACTCT 57.138 33.333 0.00 0.00 45.58 3.24
5975 8941 9.856488 TCTAAACATGTAGTGATCTAAACACTC 57.144 33.333 0.00 0.00 45.58 3.51
6004 8970 7.015292 TGAGAGTGTTTGGATCACTACTTTAGT 59.985 37.037 0.00 0.00 44.68 2.24
6005 8971 7.378966 TGAGAGTGTTTGGATCACTACTTTAG 58.621 38.462 0.00 0.00 44.68 1.85
6006 8972 7.297936 TGAGAGTGTTTGGATCACTACTTTA 57.702 36.000 0.00 0.00 44.68 1.85
6007 8973 6.174720 TGAGAGTGTTTGGATCACTACTTT 57.825 37.500 0.00 0.00 44.68 2.66
6008 8974 5.808366 TGAGAGTGTTTGGATCACTACTT 57.192 39.130 0.00 0.00 44.68 2.24
6009 8975 7.667575 ATATGAGAGTGTTTGGATCACTACT 57.332 36.000 0.00 0.00 44.68 2.57
6010 8976 9.469807 CTAATATGAGAGTGTTTGGATCACTAC 57.530 37.037 0.00 0.00 44.68 2.73
6011 8977 9.201989 ACTAATATGAGAGTGTTTGGATCACTA 57.798 33.333 0.00 0.00 44.68 2.74
6012 8978 8.083828 ACTAATATGAGAGTGTTTGGATCACT 57.916 34.615 0.00 0.00 46.86 3.41
6013 8979 8.723942 AACTAATATGAGAGTGTTTGGATCAC 57.276 34.615 0.00 0.00 36.22 3.06
6016 8982 9.314321 CGTAAACTAATATGAGAGTGTTTGGAT 57.686 33.333 0.00 0.00 0.00 3.41
6017 8983 7.762615 CCGTAAACTAATATGAGAGTGTTTGGA 59.237 37.037 0.00 0.00 0.00 3.53
6018 8984 7.762615 TCCGTAAACTAATATGAGAGTGTTTGG 59.237 37.037 0.00 0.00 0.00 3.28
6019 8985 8.697846 TCCGTAAACTAATATGAGAGTGTTTG 57.302 34.615 0.00 0.00 0.00 2.93
6020 8986 7.980099 CCTCCGTAAACTAATATGAGAGTGTTT 59.020 37.037 0.00 0.00 0.00 2.83
6021 8987 7.417570 CCCTCCGTAAACTAATATGAGAGTGTT 60.418 40.741 0.00 0.00 0.00 3.32
6022 8988 6.040616 CCCTCCGTAAACTAATATGAGAGTGT 59.959 42.308 0.00 0.00 0.00 3.55
6023 8989 6.264744 TCCCTCCGTAAACTAATATGAGAGTG 59.735 42.308 0.00 0.00 0.00 3.51
6024 8990 6.371278 TCCCTCCGTAAACTAATATGAGAGT 58.629 40.000 0.00 0.00 0.00 3.24
6025 8991 6.490721 ACTCCCTCCGTAAACTAATATGAGAG 59.509 42.308 0.00 0.00 0.00 3.20
6026 8992 6.371278 ACTCCCTCCGTAAACTAATATGAGA 58.629 40.000 0.00 0.00 0.00 3.27
6027 8993 6.651975 ACTCCCTCCGTAAACTAATATGAG 57.348 41.667 0.00 0.00 0.00 2.90
6028 8994 8.716674 AATACTCCCTCCGTAAACTAATATGA 57.283 34.615 0.00 0.00 0.00 2.15
6029 8995 9.204570 CAAATACTCCCTCCGTAAACTAATATG 57.795 37.037 0.00 0.00 0.00 1.78
6030 8996 7.876582 GCAAATACTCCCTCCGTAAACTAATAT 59.123 37.037 0.00 0.00 0.00 1.28
6031 8997 7.070322 AGCAAATACTCCCTCCGTAAACTAATA 59.930 37.037 0.00 0.00 0.00 0.98
6032 8998 6.053650 GCAAATACTCCCTCCGTAAACTAAT 58.946 40.000 0.00 0.00 0.00 1.73
6033 8999 5.188359 AGCAAATACTCCCTCCGTAAACTAA 59.812 40.000 0.00 0.00 0.00 2.24
6034 9000 4.713321 AGCAAATACTCCCTCCGTAAACTA 59.287 41.667 0.00 0.00 0.00 2.24
6035 9001 3.518303 AGCAAATACTCCCTCCGTAAACT 59.482 43.478 0.00 0.00 0.00 2.66
6036 9002 3.870274 AGCAAATACTCCCTCCGTAAAC 58.130 45.455 0.00 0.00 0.00 2.01
6037 9003 4.713321 ACTAGCAAATACTCCCTCCGTAAA 59.287 41.667 0.00 0.00 0.00 2.01
6038 9004 4.098960 CACTAGCAAATACTCCCTCCGTAA 59.901 45.833 0.00 0.00 0.00 3.18
6039 9005 3.635373 CACTAGCAAATACTCCCTCCGTA 59.365 47.826 0.00 0.00 0.00 4.02
6040 9006 2.431057 CACTAGCAAATACTCCCTCCGT 59.569 50.000 0.00 0.00 0.00 4.69
6041 9007 2.224066 CCACTAGCAAATACTCCCTCCG 60.224 54.545 0.00 0.00 0.00 4.63
6042 9008 3.039011 TCCACTAGCAAATACTCCCTCC 58.961 50.000 0.00 0.00 0.00 4.30
6043 9009 4.503991 CCATCCACTAGCAAATACTCCCTC 60.504 50.000 0.00 0.00 0.00 4.30
6044 9010 3.392616 CCATCCACTAGCAAATACTCCCT 59.607 47.826 0.00 0.00 0.00 4.20
6045 9011 3.391296 TCCATCCACTAGCAAATACTCCC 59.609 47.826 0.00 0.00 0.00 4.30
6076 9042 1.091771 ACATCTGCGTACATGCTGCC 61.092 55.000 0.00 0.00 34.22 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.