Multiple sequence alignment - TraesCS7A01G203700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G203700 chr7A 100.000 6135 0 0 1 6135 165902345 165908479 0.000000e+00 11330.0
1 TraesCS7A01G203700 chr7A 96.923 650 18 2 5487 6135 130329972 130330620 0.000000e+00 1088.0
2 TraesCS7A01G203700 chr7A 86.269 335 22 5 1 334 734695120 734695431 5.890000e-90 342.0
3 TraesCS7A01G203700 chr7D 93.837 4040 187 23 341 4332 164405982 164410007 0.000000e+00 6024.0
4 TraesCS7A01G203700 chr7D 92.757 994 58 7 4345 5335 164410056 164411038 0.000000e+00 1424.0
5 TraesCS7A01G203700 chr7B 94.025 3766 188 19 471 4217 126735514 126739261 0.000000e+00 5674.0
6 TraesCS7A01G203700 chr7B 91.929 731 51 4 4342 5072 126739440 126740162 0.000000e+00 1016.0
7 TraesCS7A01G203700 chr7B 91.603 262 14 3 5076 5335 126740202 126740457 7.560000e-94 355.0
8 TraesCS7A01G203700 chr7B 85.924 341 24 12 1 340 714066108 714065791 5.890000e-90 342.0
9 TraesCS7A01G203700 chr7B 98.214 56 1 0 422 477 126735430 126735485 1.410000e-16 99.0
10 TraesCS7A01G203700 chr7B 83.000 100 13 2 10 109 723754321 723754226 3.050000e-13 87.9
11 TraesCS7A01G203700 chr7B 92.105 38 3 0 4216 4253 126739292 126739329 3.000000e-03 54.7
12 TraesCS7A01G203700 chr1A 97.389 651 15 2 5486 6135 305340198 305340847 0.000000e+00 1107.0
13 TraesCS7A01G203700 chr1A 96.923 650 17 2 5487 6135 305347124 305347771 0.000000e+00 1086.0
14 TraesCS7A01G203700 chr5A 97.385 650 14 3 5487 6135 460524725 460525372 0.000000e+00 1103.0
15 TraesCS7A01G203700 chr5A 96.358 659 20 3 5479 6135 705477959 705478615 0.000000e+00 1081.0
16 TraesCS7A01G203700 chr5A 97.308 260 7 0 81 340 698459741 698459482 5.640000e-120 442.0
17 TraesCS7A01G203700 chr5A 98.734 79 0 1 1 79 698459798 698459721 8.290000e-29 139.0
18 TraesCS7A01G203700 chr6A 97.231 650 16 2 5487 6135 132697046 132697694 0.000000e+00 1099.0
19 TraesCS7A01G203700 chr2A 96.928 651 17 3 5487 6135 678210992 678210343 0.000000e+00 1088.0
20 TraesCS7A01G203700 chr2A 88.940 217 21 2 83 297 758406473 758406688 1.310000e-66 265.0
21 TraesCS7A01G203700 chr4A 96.923 650 17 2 5487 6135 75454743 75455390 0.000000e+00 1086.0
22 TraesCS7A01G203700 chr4A 87.097 93 10 2 252 343 168112947 168112856 3.020000e-18 104.0
23 TraesCS7A01G203700 chr3A 96.918 649 18 2 5487 6135 267819939 267819293 0.000000e+00 1086.0
24 TraesCS7A01G203700 chr3A 90.114 263 25 1 81 342 646470816 646470554 2.120000e-89 340.0
25 TraesCS7A01G203700 chr5D 88.350 206 21 3 131 334 492068914 492068710 1.710000e-60 244.0
26 TraesCS7A01G203700 chr5D 77.564 156 26 7 173 321 509945568 509945415 1.100000e-12 86.1
27 TraesCS7A01G203700 chr4B 95.833 72 2 1 277 347 612212428 612212499 1.400000e-21 115.0
28 TraesCS7A01G203700 chr4B 79.878 164 24 7 178 334 442585632 442585793 1.810000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G203700 chr7A 165902345 165908479 6134 False 11330.00 11330 100.0000 1 6135 1 chr7A.!!$F2 6134
1 TraesCS7A01G203700 chr7A 130329972 130330620 648 False 1088.00 1088 96.9230 5487 6135 1 chr7A.!!$F1 648
2 TraesCS7A01G203700 chr7D 164405982 164411038 5056 False 3724.00 6024 93.2970 341 5335 2 chr7D.!!$F1 4994
3 TraesCS7A01G203700 chr7B 126735430 126740457 5027 False 1439.74 5674 93.5752 422 5335 5 chr7B.!!$F1 4913
4 TraesCS7A01G203700 chr1A 305340198 305340847 649 False 1107.00 1107 97.3890 5486 6135 1 chr1A.!!$F1 649
5 TraesCS7A01G203700 chr1A 305347124 305347771 647 False 1086.00 1086 96.9230 5487 6135 1 chr1A.!!$F2 648
6 TraesCS7A01G203700 chr5A 460524725 460525372 647 False 1103.00 1103 97.3850 5487 6135 1 chr5A.!!$F1 648
7 TraesCS7A01G203700 chr5A 705477959 705478615 656 False 1081.00 1081 96.3580 5479 6135 1 chr5A.!!$F2 656
8 TraesCS7A01G203700 chr6A 132697046 132697694 648 False 1099.00 1099 97.2310 5487 6135 1 chr6A.!!$F1 648
9 TraesCS7A01G203700 chr2A 678210343 678210992 649 True 1088.00 1088 96.9280 5487 6135 1 chr2A.!!$R1 648
10 TraesCS7A01G203700 chr4A 75454743 75455390 647 False 1086.00 1086 96.9230 5487 6135 1 chr4A.!!$F1 648
11 TraesCS7A01G203700 chr3A 267819293 267819939 646 True 1086.00 1086 96.9180 5487 6135 1 chr3A.!!$R1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.456995 GCACGAAGAGGACGAAGGAG 60.457 60.0 0.00 0.00 34.70 3.69 F
263 264 0.458543 CAACAGACAGATCGGACGGG 60.459 60.0 0.00 0.00 0.00 5.28 F
1380 1436 0.958876 GTAACAGCCTTTCCGGTGGG 60.959 60.0 0.00 3.38 34.25 4.61 F
2400 2456 0.108329 GTACCATCCCGTCCACTGTG 60.108 60.0 0.00 0.00 0.00 3.66 F
2796 2852 0.179056 TAAATCTGCGGCTACAGGGC 60.179 55.0 0.00 0.00 38.26 5.19 F
4516 4657 0.692419 CAGCTGGGTATCCTCCACCT 60.692 60.0 5.57 0.00 36.25 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1443 0.391661 TTCAGCTTCACGAGGGATGC 60.392 55.000 5.22 5.22 38.00 3.91 R
1422 1478 0.881796 GGGAGTTGCTGTACAAAGCC 59.118 55.000 4.79 0.00 42.83 4.35 R
2952 3008 0.182061 GAGATGGAATGCTGCCCTCA 59.818 55.000 0.00 0.00 0.00 3.86 R
3702 3758 0.102120 CTAGAACTGGAGCTGGCTCG 59.898 60.000 15.15 6.28 43.59 5.03 R
4710 4851 1.269998 GATATCGCCTGCTTCGGTAGT 59.730 52.381 0.00 0.00 0.00 2.73 R
5438 5622 0.102300 TATGTGGACGATCGTGCTGG 59.898 55.000 34.49 1.27 37.36 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.799755 GTTGGGCGTGATGGCGAC 61.800 66.667 0.00 0.00 46.04 5.19
32 33 4.373116 GACGCCGTCCTTGCTGGA 62.373 66.667 5.81 0.00 43.86 3.86
45 46 4.796231 CTGGAACCGGCGAGGACG 62.796 72.222 9.30 0.00 45.00 4.79
54 55 4.664677 GCGAGGACGGTGTGCTGT 62.665 66.667 0.00 0.00 33.56 4.40
55 56 2.734723 CGAGGACGGTGTGCTGTG 60.735 66.667 0.00 0.00 33.56 3.66
56 57 2.734591 GAGGACGGTGTGCTGTGA 59.265 61.111 0.00 0.00 33.56 3.58
57 58 1.664965 GAGGACGGTGTGCTGTGAC 60.665 63.158 0.00 0.00 33.56 3.67
58 59 3.036084 GGACGGTGTGCTGTGACG 61.036 66.667 0.00 0.00 33.67 4.35
59 60 3.036084 GACGGTGTGCTGTGACGG 61.036 66.667 0.00 0.00 33.67 4.79
62 63 4.961511 GGTGTGCTGTGACGGCGA 62.962 66.667 16.62 0.00 38.82 5.54
63 64 3.406361 GTGTGCTGTGACGGCGAG 61.406 66.667 16.62 0.20 38.82 5.03
68 69 4.662961 CTGTGACGGCGAGCACCA 62.663 66.667 25.55 16.49 34.19 4.17
69 70 4.662961 TGTGACGGCGAGCACCAG 62.663 66.667 25.55 0.00 34.19 4.00
80 81 4.803426 GCACCAGCGACGAGGGAG 62.803 72.222 11.58 5.45 0.00 4.30
81 82 4.135153 CACCAGCGACGAGGGAGG 62.135 72.222 11.58 1.78 0.00 4.30
88 89 4.500116 GACGAGGGAGGCGAGCAC 62.500 72.222 0.00 0.00 0.00 4.40
110 111 4.500116 GACGAGGGAGGCGAGCAC 62.500 72.222 0.00 0.00 0.00 4.40
147 148 3.839432 CGGCGGAGGGAGGAGTTC 61.839 72.222 0.00 0.00 0.00 3.01
148 149 3.471806 GGCGGAGGGAGGAGTTCC 61.472 72.222 0.00 0.00 46.00 3.62
155 156 2.896443 GGAGGAGTTCCAGGCGAG 59.104 66.667 0.28 0.00 46.01 5.03
156 157 2.726351 GGAGGAGTTCCAGGCGAGG 61.726 68.421 0.28 0.00 46.01 4.63
157 158 1.985116 GAGGAGTTCCAGGCGAGGT 60.985 63.158 0.28 0.00 38.89 3.85
158 159 2.232298 GAGGAGTTCCAGGCGAGGTG 62.232 65.000 0.28 0.00 38.89 4.00
159 160 2.266055 GAGTTCCAGGCGAGGTGG 59.734 66.667 0.00 0.00 36.28 4.61
160 161 2.526873 AGTTCCAGGCGAGGTGGT 60.527 61.111 0.00 0.00 36.37 4.16
161 162 2.358737 GTTCCAGGCGAGGTGGTG 60.359 66.667 0.00 0.00 36.37 4.17
162 163 3.636231 TTCCAGGCGAGGTGGTGG 61.636 66.667 0.00 0.00 36.37 4.61
185 186 4.040068 GGCAGCCGAGATGACATC 57.960 61.111 7.39 7.39 0.00 3.06
186 187 1.596477 GGCAGCCGAGATGACATCC 60.596 63.158 11.92 3.17 0.00 3.51
187 188 1.144716 GCAGCCGAGATGACATCCA 59.855 57.895 11.92 0.00 0.00 3.41
188 189 1.156645 GCAGCCGAGATGACATCCAC 61.157 60.000 11.92 6.06 0.00 4.02
189 190 0.873312 CAGCCGAGATGACATCCACG 60.873 60.000 19.15 19.15 0.00 4.94
190 191 2.240500 GCCGAGATGACATCCACGC 61.241 63.158 20.10 12.48 0.00 5.34
191 192 1.946156 CCGAGATGACATCCACGCG 60.946 63.158 20.10 3.53 0.00 6.01
192 193 1.064134 CGAGATGACATCCACGCGA 59.936 57.895 15.93 0.00 0.00 5.87
193 194 0.932123 CGAGATGACATCCACGCGAG 60.932 60.000 15.93 4.16 0.00 5.03
194 195 1.211818 GAGATGACATCCACGCGAGC 61.212 60.000 15.93 0.00 0.00 5.03
195 196 1.519234 GATGACATCCACGCGAGCA 60.519 57.895 15.93 0.00 0.00 4.26
196 197 1.485838 GATGACATCCACGCGAGCAG 61.486 60.000 15.93 0.29 0.00 4.24
197 198 2.887568 GACATCCACGCGAGCAGG 60.888 66.667 15.93 9.35 0.00 4.85
198 199 4.457496 ACATCCACGCGAGCAGGG 62.457 66.667 15.93 6.13 38.93 4.45
228 229 3.482783 GCAGCGCACGAAGAGGAC 61.483 66.667 11.47 0.00 0.00 3.85
229 230 3.175240 CAGCGCACGAAGAGGACG 61.175 66.667 11.47 0.00 0.00 4.79
230 231 3.362797 AGCGCACGAAGAGGACGA 61.363 61.111 11.47 0.00 34.70 4.20
231 232 2.430244 GCGCACGAAGAGGACGAA 60.430 61.111 0.30 0.00 34.70 3.85
232 233 2.437343 GCGCACGAAGAGGACGAAG 61.437 63.158 0.30 0.00 34.70 3.79
233 234 1.801913 CGCACGAAGAGGACGAAGG 60.802 63.158 0.00 0.00 34.70 3.46
234 235 1.585006 GCACGAAGAGGACGAAGGA 59.415 57.895 0.00 0.00 34.70 3.36
235 236 0.456995 GCACGAAGAGGACGAAGGAG 60.457 60.000 0.00 0.00 34.70 3.69
236 237 1.166129 CACGAAGAGGACGAAGGAGA 58.834 55.000 0.00 0.00 34.70 3.71
237 238 1.746220 CACGAAGAGGACGAAGGAGAT 59.254 52.381 0.00 0.00 34.70 2.75
238 239 1.746220 ACGAAGAGGACGAAGGAGATG 59.254 52.381 0.00 0.00 34.70 2.90
239 240 2.017782 CGAAGAGGACGAAGGAGATGA 58.982 52.381 0.00 0.00 0.00 2.92
240 241 2.423892 CGAAGAGGACGAAGGAGATGAA 59.576 50.000 0.00 0.00 0.00 2.57
241 242 3.119459 CGAAGAGGACGAAGGAGATGAAA 60.119 47.826 0.00 0.00 0.00 2.69
242 243 4.429108 GAAGAGGACGAAGGAGATGAAAG 58.571 47.826 0.00 0.00 0.00 2.62
243 244 3.436243 AGAGGACGAAGGAGATGAAAGT 58.564 45.455 0.00 0.00 0.00 2.66
244 245 3.445805 AGAGGACGAAGGAGATGAAAGTC 59.554 47.826 0.00 0.00 0.00 3.01
245 246 3.165875 AGGACGAAGGAGATGAAAGTCA 58.834 45.455 0.00 0.00 0.00 3.41
246 247 3.578716 AGGACGAAGGAGATGAAAGTCAA 59.421 43.478 0.00 0.00 0.00 3.18
247 248 3.680458 GGACGAAGGAGATGAAAGTCAAC 59.320 47.826 0.00 0.00 0.00 3.18
248 249 4.307432 GACGAAGGAGATGAAAGTCAACA 58.693 43.478 0.00 0.00 0.00 3.33
249 250 4.310769 ACGAAGGAGATGAAAGTCAACAG 58.689 43.478 0.00 0.00 0.00 3.16
250 251 4.039245 ACGAAGGAGATGAAAGTCAACAGA 59.961 41.667 0.00 0.00 0.00 3.41
251 252 4.387256 CGAAGGAGATGAAAGTCAACAGAC 59.613 45.833 0.00 0.00 0.00 3.51
252 253 4.963318 AGGAGATGAAAGTCAACAGACA 57.037 40.909 0.00 0.00 34.69 3.41
253 254 4.892433 AGGAGATGAAAGTCAACAGACAG 58.108 43.478 0.00 0.00 34.69 3.51
254 255 4.590647 AGGAGATGAAAGTCAACAGACAGA 59.409 41.667 0.00 0.00 34.69 3.41
255 256 5.248020 AGGAGATGAAAGTCAACAGACAGAT 59.752 40.000 0.00 0.00 34.69 2.90
256 257 5.580297 GGAGATGAAAGTCAACAGACAGATC 59.420 44.000 0.00 0.00 34.69 2.75
257 258 5.167121 AGATGAAAGTCAACAGACAGATCG 58.833 41.667 0.00 0.00 34.69 3.69
258 259 3.653344 TGAAAGTCAACAGACAGATCGG 58.347 45.455 0.00 0.00 34.69 4.18
259 260 3.320826 TGAAAGTCAACAGACAGATCGGA 59.679 43.478 0.00 0.00 34.69 4.55
260 261 3.305398 AAGTCAACAGACAGATCGGAC 57.695 47.619 0.00 0.00 34.69 4.79
261 262 1.200252 AGTCAACAGACAGATCGGACG 59.800 52.381 0.00 0.00 34.69 4.79
262 263 0.526211 TCAACAGACAGATCGGACGG 59.474 55.000 0.00 0.00 0.00 4.79
263 264 0.458543 CAACAGACAGATCGGACGGG 60.459 60.000 0.00 0.00 0.00 5.28
264 265 1.605058 AACAGACAGATCGGACGGGG 61.605 60.000 0.00 0.00 0.00 5.73
265 266 1.753078 CAGACAGATCGGACGGGGA 60.753 63.158 0.00 0.00 0.00 4.81
266 267 1.000019 AGACAGATCGGACGGGGAA 60.000 57.895 0.00 0.00 0.00 3.97
267 268 1.038130 AGACAGATCGGACGGGGAAG 61.038 60.000 0.00 0.00 0.00 3.46
268 269 2.107141 CAGATCGGACGGGGAAGC 59.893 66.667 0.00 0.00 0.00 3.86
269 270 3.528370 AGATCGGACGGGGAAGCG 61.528 66.667 0.00 0.00 0.00 4.68
277 278 4.473520 CGGGGAAGCGCACTGGAT 62.474 66.667 11.47 0.00 0.00 3.41
278 279 2.514824 GGGGAAGCGCACTGGATC 60.515 66.667 11.47 0.00 0.00 3.36
279 280 2.586792 GGGAAGCGCACTGGATCT 59.413 61.111 11.47 0.00 0.00 2.75
280 281 1.817099 GGGAAGCGCACTGGATCTG 60.817 63.158 11.47 0.00 0.00 2.90
281 282 1.219124 GGAAGCGCACTGGATCTGA 59.781 57.895 11.47 0.00 0.00 3.27
282 283 1.086634 GGAAGCGCACTGGATCTGAC 61.087 60.000 11.47 0.00 0.00 3.51
283 284 1.416813 GAAGCGCACTGGATCTGACG 61.417 60.000 11.47 0.00 0.00 4.35
284 285 2.842394 AAGCGCACTGGATCTGACGG 62.842 60.000 11.47 0.00 0.00 4.79
285 286 2.887568 CGCACTGGATCTGACGGC 60.888 66.667 0.00 0.00 0.00 5.68
286 287 2.581354 GCACTGGATCTGACGGCT 59.419 61.111 0.00 0.00 0.00 5.52
287 288 1.812922 GCACTGGATCTGACGGCTG 60.813 63.158 0.00 0.00 0.00 4.85
288 289 1.153489 CACTGGATCTGACGGCTGG 60.153 63.158 0.00 0.00 0.00 4.85
289 290 1.610673 ACTGGATCTGACGGCTGGT 60.611 57.895 0.00 0.00 0.00 4.00
290 291 1.153489 CTGGATCTGACGGCTGGTG 60.153 63.158 0.00 0.00 0.00 4.17
291 292 2.512515 GGATCTGACGGCTGGTGC 60.513 66.667 0.00 0.00 38.76 5.01
292 293 2.581354 GATCTGACGGCTGGTGCT 59.419 61.111 0.00 0.00 39.59 4.40
308 309 3.953775 CTGGACCGGCCCAACAGT 61.954 66.667 11.90 0.00 35.47 3.55
309 310 3.491598 CTGGACCGGCCCAACAGTT 62.492 63.158 11.90 0.00 35.47 3.16
310 311 2.983592 GGACCGGCCCAACAGTTG 60.984 66.667 0.00 6.28 0.00 3.16
377 378 4.868171 GGAAAAGGAAAGGACAACACAAAC 59.132 41.667 0.00 0.00 0.00 2.93
381 382 4.086457 AGGAAAGGACAACACAAACAAGT 58.914 39.130 0.00 0.00 0.00 3.16
382 383 4.526650 AGGAAAGGACAACACAAACAAGTT 59.473 37.500 0.00 0.00 0.00 2.66
383 384 5.011635 AGGAAAGGACAACACAAACAAGTTT 59.988 36.000 0.00 0.00 0.00 2.66
413 414 8.647143 TTAGCAAAAGGAAAAGAAAATGACAG 57.353 30.769 0.00 0.00 0.00 3.51
751 805 2.221169 TCGCCATAAATGCAGGTGATC 58.779 47.619 1.29 0.00 37.05 2.92
814 868 2.541556 GGAAGTAACTGCTCGTCCATC 58.458 52.381 0.00 0.00 33.62 3.51
826 880 1.219124 GTCCATCGCCTCTGCTTCA 59.781 57.895 0.00 0.00 34.43 3.02
886 941 1.339291 GCAGAGCAATGGATAAAGGGC 59.661 52.381 0.00 0.00 0.00 5.19
918 973 7.430992 ACTGCAATTCAGCATATACTACATG 57.569 36.000 0.00 0.00 46.76 3.21
921 976 8.900983 TGCAATTCAGCATATACTACATGTTA 57.099 30.769 2.30 0.00 40.11 2.41
986 1042 7.398829 TGCTGACTAATCCAAGGTTTATGTTA 58.601 34.615 0.00 0.00 0.00 2.41
1026 1082 5.011943 GGGGCTAATTTCATGGCATCATTTA 59.988 40.000 0.00 0.00 0.00 1.40
1027 1083 6.464180 GGGGCTAATTTCATGGCATCATTTAA 60.464 38.462 0.00 0.00 0.00 1.52
1163 1219 4.160329 TCTTCTGATACAACTCCCTGTGT 58.840 43.478 0.00 0.00 0.00 3.72
1182 1238 2.027192 TGTATGGAAGGGAGTTCAGTGC 60.027 50.000 0.00 0.00 36.82 4.40
1197 1253 4.186856 TCAGTGCGAGATGAACAATGTA 57.813 40.909 0.00 0.00 31.71 2.29
1236 1292 5.313712 TCATACTCCAAAGTTTCTGGTTCC 58.686 41.667 0.00 0.00 36.92 3.62
1272 1328 1.134491 GGGCTTATGAAGTACCTGCGT 60.134 52.381 0.00 0.00 0.00 5.24
1316 1372 3.288290 CTCCGGTCCGATCCCTCG 61.288 72.222 14.39 0.00 44.62 4.63
1321 1377 1.141234 GGTCCGATCCCTCGTGAAC 59.859 63.158 0.00 0.00 43.49 3.18
1380 1436 0.958876 GTAACAGCCTTTCCGGTGGG 60.959 60.000 0.00 3.38 34.25 4.61
1383 1439 1.452108 CAGCCTTTCCGGTGGGATC 60.452 63.158 0.00 0.00 43.41 3.36
1396 1452 4.008933 GGATCCCGGCATCCCTCG 62.009 72.222 14.12 0.00 37.00 4.63
1401 1457 2.202932 CCGGCATCCCTCGTGAAG 60.203 66.667 0.00 0.00 0.00 3.02
1404 1460 1.817099 GGCATCCCTCGTGAAGCTG 60.817 63.158 0.00 0.00 0.00 4.24
1464 1520 0.185416 GTGGAGAGATACCCGAGGGA 59.815 60.000 16.26 0.00 38.96 4.20
1537 1593 1.964223 GTGGCTCTATCCCTTCATCGA 59.036 52.381 0.00 0.00 0.00 3.59
1638 1694 2.486982 CTGCACCAAGTTGGAGAATCTG 59.513 50.000 28.80 15.40 40.96 2.90
2042 2098 1.301401 CCGTTCCGAAACAGCTGGA 60.301 57.895 19.93 1.42 34.93 3.86
2278 2334 7.412853 TTTGGGATTAACAGCCCTTTAATAC 57.587 36.000 10.31 0.00 44.96 1.89
2316 2372 8.655901 ACAAATAATAGGTTTGTTGGTGGAATT 58.344 29.630 0.00 0.00 44.84 2.17
2358 2414 8.194769 TCAGGTAAAAGATTGAAAGTTTGGAAC 58.805 33.333 0.00 0.00 0.00 3.62
2393 2449 1.760613 TCTCAATGGTACCATCCCGTC 59.239 52.381 27.49 0.00 35.31 4.79
2400 2456 0.108329 GTACCATCCCGTCCACTGTG 60.108 60.000 0.00 0.00 0.00 3.66
2444 2500 5.131168 CGAATTCGTCTCCATAACAACAG 57.869 43.478 19.67 0.00 34.11 3.16
2471 2527 1.531739 GGGCAAGTTCCGCAATTCCA 61.532 55.000 0.00 0.00 0.00 3.53
2525 2581 4.652822 AGTCACAATTCCTTAAGTGGTCC 58.347 43.478 0.97 0.00 35.01 4.46
2669 2725 0.909610 CACAACAGCCTAGAGGGGGA 60.910 60.000 0.00 0.00 35.18 4.81
2694 2750 2.158623 TCCTGCACAGATTTCCAGTTGT 60.159 45.455 0.00 0.00 0.00 3.32
2710 2766 1.846175 GTTGTTCGAAGTTGCACTTGC 59.154 47.619 0.00 0.00 38.80 4.01
2772 2828 2.704572 ACAGTATGCAAGCTGGAGTTC 58.295 47.619 20.25 0.00 42.53 3.01
2796 2852 0.179056 TAAATCTGCGGCTACAGGGC 60.179 55.000 0.00 0.00 38.26 5.19
2865 2921 3.851976 CTAGTCGAGCTACAACTTGGT 57.148 47.619 0.00 0.00 0.00 3.67
2883 2939 1.912763 TGGCAATGTTCTTGGGGGC 60.913 57.895 0.00 0.00 0.00 5.80
2884 2940 1.912763 GGCAATGTTCTTGGGGGCA 60.913 57.895 0.00 0.00 0.00 5.36
2926 2982 8.753497 AGGAACTTTGAAAAGATTGAGTACTT 57.247 30.769 9.71 0.00 39.31 2.24
2977 3033 3.255149 GGGCAGCATTCCATCTCAATTAG 59.745 47.826 0.00 0.00 0.00 1.73
2980 3036 3.058432 CAGCATTCCATCTCAATTAGGCG 60.058 47.826 0.00 0.00 0.00 5.52
2999 3055 1.879380 CGACTTGGTGGATCTTGCAAA 59.121 47.619 0.00 0.00 0.00 3.68
3000 3056 2.489329 CGACTTGGTGGATCTTGCAAAT 59.511 45.455 0.00 0.00 0.00 2.32
3001 3057 3.426695 CGACTTGGTGGATCTTGCAAATC 60.427 47.826 0.00 6.81 0.00 2.17
3003 3059 3.508793 ACTTGGTGGATCTTGCAAATCTG 59.491 43.478 16.14 0.47 0.00 2.90
3031 3087 6.867519 TGTCAGTTAATAATCTCAGTGGGA 57.132 37.500 0.00 0.00 0.00 4.37
3032 3088 6.878317 TGTCAGTTAATAATCTCAGTGGGAG 58.122 40.000 0.00 0.00 45.49 4.30
3063 3119 4.439153 CCGTTAGGAAGTCTACGTGCATTA 60.439 45.833 0.00 0.00 41.02 1.90
3067 3123 7.060748 CGTTAGGAAGTCTACGTGCATTATATG 59.939 40.741 0.00 0.00 0.00 1.78
3122 3178 4.884164 GCCAGTGCCAGATAATCTTTTACT 59.116 41.667 0.00 0.00 0.00 2.24
3123 3179 6.055588 GCCAGTGCCAGATAATCTTTTACTA 58.944 40.000 0.00 0.00 0.00 1.82
3124 3180 6.017852 GCCAGTGCCAGATAATCTTTTACTAC 60.018 42.308 0.00 0.00 0.00 2.73
3125 3181 7.047891 CCAGTGCCAGATAATCTTTTACTACA 58.952 38.462 0.00 0.00 0.00 2.74
3175 3231 4.838423 TCAGTGGAAATTCAGGTCTCTGTA 59.162 41.667 0.00 0.00 41.59 2.74
3178 3234 4.333926 GTGGAAATTCAGGTCTCTGTATGC 59.666 45.833 0.00 0.00 41.59 3.14
3191 3247 4.162888 TCTCTGTATGCCTTGTCATGATGT 59.837 41.667 0.00 0.00 0.00 3.06
3194 3250 3.695556 TGTATGCCTTGTCATGATGTTGG 59.304 43.478 0.00 0.64 0.00 3.77
3245 3301 5.163141 TGGAACCTTGTAGTTCATTGAGGAA 60.163 40.000 6.73 0.00 46.52 3.36
3258 3314 5.794894 TCATTGAGGAAAAGAGGAGTACAC 58.205 41.667 0.00 0.00 0.00 2.90
3259 3315 5.306937 TCATTGAGGAAAAGAGGAGTACACA 59.693 40.000 0.00 0.00 0.00 3.72
3300 3356 7.912250 GCTATGATATGTCTTGGTTCAGTTTTG 59.088 37.037 0.00 0.00 0.00 2.44
3301 3357 6.012658 TGATATGTCTTGGTTCAGTTTTGC 57.987 37.500 0.00 0.00 0.00 3.68
3303 3359 4.574599 ATGTCTTGGTTCAGTTTTGCTC 57.425 40.909 0.00 0.00 0.00 4.26
3675 3731 6.716628 TCCTCTATGAATTTATGGACAATGGC 59.283 38.462 0.00 0.00 0.00 4.40
3702 3758 2.062971 ATGATGTTCTGCATGGGACC 57.937 50.000 0.00 0.00 38.06 4.46
3814 3870 1.327460 CAGCCATTATTCACCGTGACG 59.673 52.381 0.00 0.00 0.00 4.35
3894 3950 3.312421 GCATTGCAAAGCTTATCGACCTA 59.688 43.478 18.89 0.00 0.00 3.08
4067 4128 7.269084 CGACTGATTTCATGTTATGTGTTTGTC 59.731 37.037 0.00 0.00 0.00 3.18
4069 4130 8.077991 ACTGATTTCATGTTATGTGTTTGTCAG 58.922 33.333 0.00 0.00 34.58 3.51
4072 4133 9.121517 GATTTCATGTTATGTGTTTGTCAGAAG 57.878 33.333 0.00 0.00 0.00 2.85
4103 4164 7.453393 ACATCAGAACCTTGATCTGTTTCTAA 58.547 34.615 3.72 0.00 43.77 2.10
4185 4246 5.781210 TTGGTTGTTTCAATGCAGTCATA 57.219 34.783 0.00 0.00 31.46 2.15
4188 4249 4.917415 GGTTGTTTCAATGCAGTCATACAC 59.083 41.667 0.00 0.00 31.46 2.90
4199 4260 3.065371 GCAGTCATACACAATAGTTGCCC 59.935 47.826 0.00 0.00 0.00 5.36
4204 4265 2.143876 ACACAATAGTTGCCCCATCC 57.856 50.000 0.00 0.00 0.00 3.51
4262 4355 8.955388 ACACTGATAATGTGCATTTGTATTACA 58.045 29.630 2.56 0.00 38.86 2.41
4263 4356 9.955208 CACTGATAATGTGCATTTGTATTACAT 57.045 29.630 2.56 0.00 33.73 2.29
4307 4406 9.908152 AGGCATGTAAATACTTTGAAAAACTAC 57.092 29.630 0.00 0.00 0.00 2.73
4323 4422 8.018520 TGAAAAACTACTTTGCATATACAACCG 58.981 33.333 0.00 0.00 26.42 4.44
4336 4435 6.036735 GCATATACAACCGCAACTTCTTTCTA 59.963 38.462 0.00 0.00 0.00 2.10
4337 4436 7.413657 GCATATACAACCGCAACTTCTTTCTAA 60.414 37.037 0.00 0.00 0.00 2.10
4399 4540 2.161609 GCATTTTCAACCAGGAGTACCG 59.838 50.000 0.00 0.00 41.83 4.02
4401 4542 4.571919 CATTTTCAACCAGGAGTACCGTA 58.428 43.478 0.00 0.00 41.83 4.02
4408 4549 2.040813 ACCAGGAGTACCGTAGAGTTCA 59.959 50.000 0.00 0.00 41.83 3.18
4422 4563 4.785511 AGAGTTCAACGTGTACAGCTAT 57.214 40.909 0.00 0.00 0.00 2.97
4437 4578 5.793030 ACAGCTATGGAGTGGTATTACTC 57.207 43.478 0.00 0.00 44.96 2.59
4473 4614 1.771746 GATGGCCCTGGATCCCTCA 60.772 63.158 9.90 0.70 0.00 3.86
4476 4617 0.925720 TGGCCCTGGATCCCTCATTT 60.926 55.000 9.90 0.00 0.00 2.32
4480 4621 1.144503 CCCTGGATCCCTCATTTCCTG 59.855 57.143 9.90 0.00 0.00 3.86
4483 4624 2.507058 CTGGATCCCTCATTTCCTGACA 59.493 50.000 9.90 0.00 32.03 3.58
4491 4632 4.275810 CCTCATTTCCTGACAATGTGGAT 58.724 43.478 7.64 0.00 43.52 3.41
4516 4657 0.692419 CAGCTGGGTATCCTCCACCT 60.692 60.000 5.57 0.00 36.25 4.00
4531 4672 1.619654 CACCTTGAATGAGGGCAACA 58.380 50.000 0.00 0.00 41.31 3.33
4533 4674 3.355378 CACCTTGAATGAGGGCAACATA 58.645 45.455 0.00 0.00 41.31 2.29
4539 4680 4.522114 TGAATGAGGGCAACATAATCGAA 58.478 39.130 0.00 0.00 39.74 3.71
4542 4683 4.149511 TGAGGGCAACATAATCGAATCA 57.850 40.909 0.00 0.00 39.74 2.57
4557 4698 2.116983 AATCAGTGTGCGACCCTGCT 62.117 55.000 0.00 0.00 35.36 4.24
4561 4702 1.153745 GTGTGCGACCCTGCTCTAG 60.154 63.158 0.00 0.00 35.36 2.43
4590 4731 2.154462 GTATGTGGCACTGCTGAACTT 58.846 47.619 19.83 0.00 0.00 2.66
4641 4782 1.399744 TTAGATGCACCGCGGAGGAT 61.400 55.000 35.90 31.56 45.00 3.24
4648 4789 4.161295 CCGCGGAGGATGCAGGAA 62.161 66.667 24.07 0.00 45.00 3.36
4698 4839 3.181967 CTGACACGTGCTAGGCGC 61.182 66.667 17.22 0.00 39.77 6.53
4710 4851 0.384309 CTAGGCGCGAGGTTGTATCA 59.616 55.000 12.10 0.00 0.00 2.15
4764 4905 1.064017 TCCTGTCAAAACCTGGCAACT 60.064 47.619 0.00 0.00 39.78 3.16
4770 4911 2.137523 CAAAACCTGGCAACTTGATGC 58.862 47.619 0.00 0.00 45.67 3.91
4924 5067 4.700213 TCCTTTGATCTCGCTTTTAAAGGG 59.300 41.667 14.44 14.44 42.60 3.95
4925 5068 4.142381 CCTTTGATCTCGCTTTTAAAGGGG 60.142 45.833 19.16 7.93 40.09 4.79
4998 5141 7.268586 ACACATGAAGTATTAGACATGAGTCC 58.731 38.462 0.00 0.00 46.15 3.85
5007 5150 6.875972 ATTAGACATGAGTCCTTAGTGGTT 57.124 37.500 0.00 0.00 46.15 3.67
5008 5151 7.973048 ATTAGACATGAGTCCTTAGTGGTTA 57.027 36.000 0.00 0.00 46.15 2.85
5010 5153 6.875972 AGACATGAGTCCTTAGTGGTTAAT 57.124 37.500 0.00 0.00 46.15 1.40
5011 5154 7.973048 AGACATGAGTCCTTAGTGGTTAATA 57.027 36.000 0.00 0.00 46.15 0.98
5013 5156 8.258708 AGACATGAGTCCTTAGTGGTTAATAAC 58.741 37.037 0.00 0.00 46.15 1.89
5014 5157 7.913789 ACATGAGTCCTTAGTGGTTAATAACA 58.086 34.615 0.00 0.00 37.07 2.41
5139 5318 6.961554 CGCAAGTTTACATAATTCCTGAGTTC 59.038 38.462 0.00 0.00 0.00 3.01
5142 5321 6.424032 AGTTTACATAATTCCTGAGTTCCCC 58.576 40.000 0.00 0.00 0.00 4.81
5154 5333 2.716424 TGAGTTCCCCAATCCTCTGTTT 59.284 45.455 0.00 0.00 0.00 2.83
5185 5364 2.874014 TCACAATCCTGCATGTTTCCA 58.126 42.857 0.00 0.00 0.00 3.53
5186 5365 2.821378 TCACAATCCTGCATGTTTCCAG 59.179 45.455 0.00 0.00 0.00 3.86
5205 5384 8.715088 GTTTCCAGTTTCTACGCTTTTAGAATA 58.285 33.333 1.48 0.00 37.80 1.75
5215 5394 8.752254 TCTACGCTTTTAGAATATTGTGAATCG 58.248 33.333 0.00 2.23 0.00 3.34
5234 5413 1.287425 GAAGACGCCCCAATAAGACG 58.713 55.000 0.00 0.00 0.00 4.18
5235 5414 0.107848 AAGACGCCCCAATAAGACGG 60.108 55.000 0.00 0.00 0.00 4.79
5236 5415 0.974010 AGACGCCCCAATAAGACGGA 60.974 55.000 0.00 0.00 0.00 4.69
5237 5416 0.808847 GACGCCCCAATAAGACGGAC 60.809 60.000 0.00 0.00 0.00 4.79
5254 5438 3.756434 ACGGACATAACAATCTTGGGTTG 59.244 43.478 0.00 0.00 0.00 3.77
5255 5439 3.128589 CGGACATAACAATCTTGGGTTGG 59.871 47.826 0.00 0.00 0.00 3.77
5336 5520 4.762289 TTCCAATCTAAAGGCTCTCCTC 57.238 45.455 0.00 0.00 43.40 3.71
5337 5521 3.041946 TCCAATCTAAAGGCTCTCCTCC 58.958 50.000 0.00 0.00 43.40 4.30
5338 5522 2.105649 CCAATCTAAAGGCTCTCCTCCC 59.894 54.545 0.00 0.00 43.40 4.30
5339 5523 2.105649 CAATCTAAAGGCTCTCCTCCCC 59.894 54.545 0.00 0.00 43.40 4.81
5340 5524 0.031010 TCTAAAGGCTCTCCTCCCCC 60.031 60.000 0.00 0.00 43.40 5.40
5341 5525 0.030603 CTAAAGGCTCTCCTCCCCCT 60.031 60.000 0.00 0.00 43.40 4.79
5342 5526 0.031010 TAAAGGCTCTCCTCCCCCTC 60.031 60.000 0.00 0.00 43.40 4.30
5343 5527 2.849071 AAAGGCTCTCCTCCCCCTCC 62.849 65.000 0.00 0.00 43.40 4.30
5344 5528 4.890306 GGCTCTCCTCCCCCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
5345 5529 3.773154 GCTCTCCTCCCCCTCCCT 61.773 72.222 0.00 0.00 0.00 4.20
5346 5530 2.612251 CTCTCCTCCCCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
5347 5531 2.204624 TCTCCTCCCCCTCCCTCA 60.205 66.667 0.00 0.00 0.00 3.86
5348 5532 1.866997 TCTCCTCCCCCTCCCTCAA 60.867 63.158 0.00 0.00 0.00 3.02
5349 5533 1.238896 TCTCCTCCCCCTCCCTCAAT 61.239 60.000 0.00 0.00 0.00 2.57
5350 5534 0.327964 CTCCTCCCCCTCCCTCAATT 60.328 60.000 0.00 0.00 0.00 2.32
5351 5535 1.031939 TCCTCCCCCTCCCTCAATTA 58.968 55.000 0.00 0.00 0.00 1.40
5352 5536 1.590590 TCCTCCCCCTCCCTCAATTAT 59.409 52.381 0.00 0.00 0.00 1.28
5353 5537 1.988846 CCTCCCCCTCCCTCAATTATC 59.011 57.143 0.00 0.00 0.00 1.75
5354 5538 2.429985 CCTCCCCCTCCCTCAATTATCT 60.430 54.545 0.00 0.00 0.00 1.98
5355 5539 3.331120 CTCCCCCTCCCTCAATTATCTT 58.669 50.000 0.00 0.00 0.00 2.40
5356 5540 4.503398 CTCCCCCTCCCTCAATTATCTTA 58.497 47.826 0.00 0.00 0.00 2.10
5357 5541 5.104409 CTCCCCCTCCCTCAATTATCTTAT 58.896 45.833 0.00 0.00 0.00 1.73
5358 5542 5.495787 TCCCCCTCCCTCAATTATCTTATT 58.504 41.667 0.00 0.00 0.00 1.40
5359 5543 6.649852 TCCCCCTCCCTCAATTATCTTATTA 58.350 40.000 0.00 0.00 0.00 0.98
5360 5544 7.092889 TCCCCCTCCCTCAATTATCTTATTAA 58.907 38.462 0.00 0.00 0.00 1.40
5361 5545 7.018249 TCCCCCTCCCTCAATTATCTTATTAAC 59.982 40.741 0.00 0.00 0.00 2.01
5362 5546 7.018650 CCCCCTCCCTCAATTATCTTATTAACT 59.981 40.741 0.00 0.00 0.00 2.24
5363 5547 7.885399 CCCCTCCCTCAATTATCTTATTAACTG 59.115 40.741 0.00 0.00 0.00 3.16
5364 5548 7.885399 CCCTCCCTCAATTATCTTATTAACTGG 59.115 40.741 0.00 0.00 0.00 4.00
5365 5549 8.660435 CCTCCCTCAATTATCTTATTAACTGGA 58.340 37.037 0.00 0.00 0.00 3.86
5376 5560 8.934023 ATCTTATTAACTGGAAGAAAACACCA 57.066 30.769 0.00 0.00 37.43 4.17
5377 5561 8.161699 TCTTATTAACTGGAAGAAAACACCAC 57.838 34.615 0.00 0.00 37.43 4.16
5378 5562 7.776030 TCTTATTAACTGGAAGAAAACACCACA 59.224 33.333 0.00 0.00 37.43 4.17
5379 5563 5.828299 TTAACTGGAAGAAAACACCACAG 57.172 39.130 0.00 0.00 37.43 3.66
5380 5564 2.654863 ACTGGAAGAAAACACCACAGG 58.345 47.619 0.00 0.00 37.43 4.00
5381 5565 1.956477 CTGGAAGAAAACACCACAGGG 59.044 52.381 0.00 0.00 36.48 4.45
5382 5566 1.566703 TGGAAGAAAACACCACAGGGA 59.433 47.619 0.00 0.00 38.05 4.20
5383 5567 2.024846 TGGAAGAAAACACCACAGGGAA 60.025 45.455 0.00 0.00 38.05 3.97
5384 5568 2.623416 GGAAGAAAACACCACAGGGAAG 59.377 50.000 0.00 0.00 38.05 3.46
5385 5569 3.288092 GAAGAAAACACCACAGGGAAGT 58.712 45.455 0.00 0.00 38.05 3.01
5386 5570 3.382083 AGAAAACACCACAGGGAAGTT 57.618 42.857 0.00 0.00 37.48 2.66
5387 5571 4.513406 AGAAAACACCACAGGGAAGTTA 57.487 40.909 0.00 0.00 35.80 2.24
5388 5572 4.461198 AGAAAACACCACAGGGAAGTTAG 58.539 43.478 0.00 0.00 35.80 2.34
5389 5573 4.165372 AGAAAACACCACAGGGAAGTTAGA 59.835 41.667 0.00 0.00 35.80 2.10
5390 5574 3.771577 AACACCACAGGGAAGTTAGAG 57.228 47.619 0.00 0.00 35.35 2.43
5391 5575 2.972348 ACACCACAGGGAAGTTAGAGA 58.028 47.619 0.00 0.00 38.05 3.10
5392 5576 2.633481 ACACCACAGGGAAGTTAGAGAC 59.367 50.000 0.00 0.00 38.05 3.36
5393 5577 1.893801 ACCACAGGGAAGTTAGAGACG 59.106 52.381 0.00 0.00 38.05 4.18
5394 5578 1.404315 CCACAGGGAAGTTAGAGACGC 60.404 57.143 0.00 0.00 35.59 5.19
5395 5579 0.526662 ACAGGGAAGTTAGAGACGCG 59.473 55.000 3.53 3.53 0.00 6.01
5396 5580 0.802607 CAGGGAAGTTAGAGACGCGC 60.803 60.000 5.73 0.00 0.00 6.86
5397 5581 1.872679 GGGAAGTTAGAGACGCGCG 60.873 63.158 30.96 30.96 0.00 6.86
5398 5582 2.506345 GGAAGTTAGAGACGCGCGC 61.506 63.158 32.58 23.91 0.00 6.86
5399 5583 2.506345 GAAGTTAGAGACGCGCGCC 61.506 63.158 32.58 21.58 0.00 6.53
5400 5584 4.831307 AGTTAGAGACGCGCGCCG 62.831 66.667 32.58 22.51 44.21 6.46
5421 5605 4.821589 CGGCAGTCCTCCGGCTTC 62.822 72.222 0.00 0.00 42.99 3.86
5422 5606 4.475135 GGCAGTCCTCCGGCTTCC 62.475 72.222 0.00 0.00 0.00 3.46
5423 5607 3.706373 GCAGTCCTCCGGCTTCCA 61.706 66.667 0.00 0.00 0.00 3.53
5424 5608 2.581354 CAGTCCTCCGGCTTCCAG 59.419 66.667 0.00 0.00 0.00 3.86
5425 5609 2.685380 AGTCCTCCGGCTTCCAGG 60.685 66.667 0.00 0.00 0.00 4.45
5426 5610 3.003763 GTCCTCCGGCTTCCAGGT 61.004 66.667 0.00 0.00 0.00 4.00
5427 5611 2.203938 TCCTCCGGCTTCCAGGTT 60.204 61.111 0.00 0.00 0.00 3.50
5428 5612 2.269241 CCTCCGGCTTCCAGGTTC 59.731 66.667 0.00 0.00 0.00 3.62
5429 5613 2.269241 CTCCGGCTTCCAGGTTCC 59.731 66.667 0.00 0.00 0.00 3.62
5430 5614 2.528127 TCCGGCTTCCAGGTTCCA 60.528 61.111 0.00 0.00 0.00 3.53
5431 5615 2.045926 CCGGCTTCCAGGTTCCAG 60.046 66.667 0.00 0.00 0.00 3.86
5432 5616 2.747855 CGGCTTCCAGGTTCCAGC 60.748 66.667 0.00 0.00 0.00 4.85
5433 5617 2.747855 GGCTTCCAGGTTCCAGCG 60.748 66.667 0.00 0.00 32.68 5.18
5434 5618 3.435186 GCTTCCAGGTTCCAGCGC 61.435 66.667 0.00 0.00 0.00 5.92
5435 5619 2.747855 CTTCCAGGTTCCAGCGCC 60.748 66.667 2.29 0.00 0.00 6.53
5436 5620 4.697756 TTCCAGGTTCCAGCGCCG 62.698 66.667 2.29 0.00 0.00 6.46
5453 5637 4.451150 GGCCAGCACGATCGTCCA 62.451 66.667 19.84 0.00 0.00 4.02
5454 5638 3.188786 GCCAGCACGATCGTCCAC 61.189 66.667 19.84 11.03 0.00 4.02
5455 5639 2.261361 CCAGCACGATCGTCCACA 59.739 61.111 19.84 0.00 0.00 4.17
5456 5640 1.153568 CCAGCACGATCGTCCACAT 60.154 57.895 19.84 0.00 0.00 3.21
5457 5641 0.102300 CCAGCACGATCGTCCACATA 59.898 55.000 19.84 0.00 0.00 2.29
5458 5642 1.481240 CAGCACGATCGTCCACATAG 58.519 55.000 19.84 6.45 0.00 2.23
5459 5643 0.249073 AGCACGATCGTCCACATAGC 60.249 55.000 19.84 16.67 0.00 2.97
5460 5644 0.249073 GCACGATCGTCCACATAGCT 60.249 55.000 19.84 0.00 0.00 3.32
5461 5645 1.481240 CACGATCGTCCACATAGCTG 58.519 55.000 19.84 0.00 0.00 4.24
5462 5646 1.103803 ACGATCGTCCACATAGCTGT 58.896 50.000 16.60 0.00 35.44 4.40
5472 5656 3.400505 CACATAGCTGTGCATGTGAAG 57.599 47.619 18.55 0.00 45.79 3.02
5473 5657 1.741706 ACATAGCTGTGCATGTGAAGC 59.258 47.619 10.79 7.35 33.22 3.86
5474 5658 1.065102 CATAGCTGTGCATGTGAAGCC 59.935 52.381 0.00 0.00 36.28 4.35
5475 5659 1.020861 TAGCTGTGCATGTGAAGCCG 61.021 55.000 0.00 0.00 36.28 5.52
5476 5660 2.872557 CTGTGCATGTGAAGCCGG 59.127 61.111 0.00 0.00 0.00 6.13
5477 5661 2.672651 TGTGCATGTGAAGCCGGG 60.673 61.111 2.18 0.00 0.00 5.73
5478 5662 4.120331 GTGCATGTGAAGCCGGGC 62.120 66.667 12.11 12.11 0.00 6.13
5479 5663 4.657408 TGCATGTGAAGCCGGGCA 62.657 61.111 23.09 0.00 0.00 5.36
5480 5664 4.120331 GCATGTGAAGCCGGGCAC 62.120 66.667 23.09 15.04 35.63 5.01
5481 5665 3.803082 CATGTGAAGCCGGGCACG 61.803 66.667 23.09 0.00 37.83 5.34
5642 5826 2.753043 GTCTCCACGGCCCGACTA 60.753 66.667 11.71 0.00 0.00 2.59
5660 5844 4.804139 CGACTAATCAAGCACCGAAACTAT 59.196 41.667 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.799755 GTCGCCATCACGCCCAAC 61.800 66.667 0.00 0.00 0.00 3.77
15 16 4.373116 TCCAGCAAGGACGGCGTC 62.373 66.667 30.72 30.72 43.07 5.19
23 24 4.697756 TCGCCGGTTCCAGCAAGG 62.698 66.667 1.90 0.00 39.47 3.61
24 25 3.121030 CTCGCCGGTTCCAGCAAG 61.121 66.667 1.90 0.00 0.00 4.01
25 26 4.697756 CCTCGCCGGTTCCAGCAA 62.698 66.667 1.90 0.00 0.00 3.91
28 29 4.796231 CGTCCTCGCCGGTTCCAG 62.796 72.222 1.90 0.00 0.00 3.86
37 38 4.664677 ACAGCACACCGTCCTCGC 62.665 66.667 0.00 0.00 35.54 5.03
38 39 2.734723 CACAGCACACCGTCCTCG 60.735 66.667 0.00 0.00 0.00 4.63
39 40 1.664965 GTCACAGCACACCGTCCTC 60.665 63.158 0.00 0.00 0.00 3.71
40 41 2.421739 GTCACAGCACACCGTCCT 59.578 61.111 0.00 0.00 0.00 3.85
41 42 3.036084 CGTCACAGCACACCGTCC 61.036 66.667 0.00 0.00 0.00 4.79
42 43 3.036084 CCGTCACAGCACACCGTC 61.036 66.667 0.00 0.00 0.00 4.79
45 46 4.961511 TCGCCGTCACAGCACACC 62.962 66.667 0.00 0.00 0.00 4.16
46 47 3.406361 CTCGCCGTCACAGCACAC 61.406 66.667 0.00 0.00 0.00 3.82
51 52 4.662961 TGGTGCTCGCCGTCACAG 62.663 66.667 12.47 0.00 35.04 3.66
52 53 4.662961 CTGGTGCTCGCCGTCACA 62.663 66.667 12.47 0.00 35.04 3.58
61 62 4.803426 CCCTCGTCGCTGGTGCTC 62.803 72.222 3.99 0.00 36.97 4.26
63 64 4.803426 CTCCCTCGTCGCTGGTGC 62.803 72.222 3.99 0.00 0.00 5.01
64 65 4.135153 CCTCCCTCGTCGCTGGTG 62.135 72.222 3.99 0.66 0.00 4.17
71 72 4.500116 GTGCTCGCCTCCCTCGTC 62.500 72.222 0.00 0.00 0.00 4.20
93 94 4.500116 GTGCTCGCCTCCCTCGTC 62.500 72.222 0.00 0.00 0.00 4.20
130 131 3.839432 GAACTCCTCCCTCCGCCG 61.839 72.222 0.00 0.00 0.00 6.46
131 132 3.471806 GGAACTCCTCCCTCCGCC 61.472 72.222 0.00 0.00 38.44 6.13
132 133 2.683933 TGGAACTCCTCCCTCCGC 60.684 66.667 0.00 0.00 44.69 5.54
133 134 2.060980 CCTGGAACTCCTCCCTCCG 61.061 68.421 0.00 0.00 44.69 4.63
134 135 2.371259 GCCTGGAACTCCTCCCTCC 61.371 68.421 0.00 0.00 44.69 4.30
135 136 2.726351 CGCCTGGAACTCCTCCCTC 61.726 68.421 0.00 0.00 44.69 4.30
136 137 2.685380 CGCCTGGAACTCCTCCCT 60.685 66.667 0.00 0.00 44.69 4.20
137 138 2.683933 TCGCCTGGAACTCCTCCC 60.684 66.667 0.00 0.00 44.69 4.30
138 139 2.726351 CCTCGCCTGGAACTCCTCC 61.726 68.421 0.00 0.00 45.64 4.30
139 140 1.985116 ACCTCGCCTGGAACTCCTC 60.985 63.158 0.00 0.00 36.82 3.71
140 141 2.120718 ACCTCGCCTGGAACTCCT 59.879 61.111 0.00 0.00 36.82 3.69
141 142 2.266055 CACCTCGCCTGGAACTCC 59.734 66.667 0.00 0.00 0.00 3.85
142 143 2.266055 CCACCTCGCCTGGAACTC 59.734 66.667 0.00 0.00 0.00 3.01
143 144 2.526873 ACCACCTCGCCTGGAACT 60.527 61.111 0.00 0.00 32.55 3.01
144 145 2.358737 CACCACCTCGCCTGGAAC 60.359 66.667 0.00 0.00 32.55 3.62
145 146 3.636231 CCACCACCTCGCCTGGAA 61.636 66.667 0.00 0.00 32.55 3.53
168 169 1.596477 GGATGTCATCTCGGCTGCC 60.596 63.158 9.11 9.11 0.00 4.85
169 170 1.144716 TGGATGTCATCTCGGCTGC 59.855 57.895 12.54 0.00 0.00 5.25
170 171 0.873312 CGTGGATGTCATCTCGGCTG 60.873 60.000 12.54 0.00 0.00 4.85
171 172 1.439228 CGTGGATGTCATCTCGGCT 59.561 57.895 12.54 0.00 0.00 5.52
172 173 2.240500 GCGTGGATGTCATCTCGGC 61.241 63.158 22.09 15.18 0.00 5.54
173 174 1.946156 CGCGTGGATGTCATCTCGG 60.946 63.158 22.09 13.75 0.00 4.63
174 175 0.932123 CTCGCGTGGATGTCATCTCG 60.932 60.000 12.54 16.46 0.00 4.04
175 176 1.211818 GCTCGCGTGGATGTCATCTC 61.212 60.000 12.54 3.92 0.00 2.75
176 177 1.227089 GCTCGCGTGGATGTCATCT 60.227 57.895 12.54 0.00 0.00 2.90
177 178 1.485838 CTGCTCGCGTGGATGTCATC 61.486 60.000 5.77 4.06 0.00 2.92
178 179 1.520120 CTGCTCGCGTGGATGTCAT 60.520 57.895 5.77 0.00 0.00 3.06
179 180 2.125952 CTGCTCGCGTGGATGTCA 60.126 61.111 5.77 0.00 0.00 3.58
180 181 2.887568 CCTGCTCGCGTGGATGTC 60.888 66.667 5.77 0.00 0.00 3.06
181 182 4.457496 CCCTGCTCGCGTGGATGT 62.457 66.667 5.77 0.00 0.00 3.06
211 212 3.482783 GTCCTCTTCGTGCGCTGC 61.483 66.667 9.73 0.00 0.00 5.25
212 213 3.175240 CGTCCTCTTCGTGCGCTG 61.175 66.667 9.73 0.40 0.00 5.18
213 214 2.804368 CTTCGTCCTCTTCGTGCGCT 62.804 60.000 9.73 0.00 0.00 5.92
214 215 2.430244 TTCGTCCTCTTCGTGCGC 60.430 61.111 0.00 0.00 0.00 6.09
215 216 1.801913 CCTTCGTCCTCTTCGTGCG 60.802 63.158 0.00 0.00 0.00 5.34
216 217 0.456995 CTCCTTCGTCCTCTTCGTGC 60.457 60.000 0.00 0.00 0.00 5.34
217 218 1.166129 TCTCCTTCGTCCTCTTCGTG 58.834 55.000 0.00 0.00 0.00 4.35
218 219 1.746220 CATCTCCTTCGTCCTCTTCGT 59.254 52.381 0.00 0.00 0.00 3.85
219 220 2.017782 TCATCTCCTTCGTCCTCTTCG 58.982 52.381 0.00 0.00 0.00 3.79
220 221 4.081917 ACTTTCATCTCCTTCGTCCTCTTC 60.082 45.833 0.00 0.00 0.00 2.87
221 222 3.835395 ACTTTCATCTCCTTCGTCCTCTT 59.165 43.478 0.00 0.00 0.00 2.85
222 223 3.436243 ACTTTCATCTCCTTCGTCCTCT 58.564 45.455 0.00 0.00 0.00 3.69
223 224 3.193691 TGACTTTCATCTCCTTCGTCCTC 59.806 47.826 0.00 0.00 0.00 3.71
224 225 3.165875 TGACTTTCATCTCCTTCGTCCT 58.834 45.455 0.00 0.00 0.00 3.85
225 226 3.594603 TGACTTTCATCTCCTTCGTCC 57.405 47.619 0.00 0.00 0.00 4.79
226 227 4.307432 TGTTGACTTTCATCTCCTTCGTC 58.693 43.478 0.00 0.00 0.00 4.20
227 228 4.039245 TCTGTTGACTTTCATCTCCTTCGT 59.961 41.667 0.00 0.00 0.00 3.85
228 229 4.387256 GTCTGTTGACTTTCATCTCCTTCG 59.613 45.833 0.00 0.00 39.94 3.79
229 230 5.300752 TGTCTGTTGACTTTCATCTCCTTC 58.699 41.667 0.00 0.00 43.29 3.46
230 231 5.070981 TCTGTCTGTTGACTTTCATCTCCTT 59.929 40.000 0.00 0.00 43.29 3.36
231 232 4.590647 TCTGTCTGTTGACTTTCATCTCCT 59.409 41.667 0.00 0.00 43.29 3.69
232 233 4.887748 TCTGTCTGTTGACTTTCATCTCC 58.112 43.478 0.00 0.00 43.29 3.71
233 234 5.288232 CGATCTGTCTGTTGACTTTCATCTC 59.712 44.000 0.00 0.00 43.29 2.75
234 235 5.167121 CGATCTGTCTGTTGACTTTCATCT 58.833 41.667 0.00 0.00 43.29 2.90
235 236 4.328440 CCGATCTGTCTGTTGACTTTCATC 59.672 45.833 0.00 0.00 43.29 2.92
236 237 4.021104 TCCGATCTGTCTGTTGACTTTCAT 60.021 41.667 0.00 0.00 43.29 2.57
237 238 3.320826 TCCGATCTGTCTGTTGACTTTCA 59.679 43.478 0.00 0.00 43.29 2.69
238 239 3.675698 GTCCGATCTGTCTGTTGACTTTC 59.324 47.826 0.00 0.00 43.29 2.62
239 240 3.654414 GTCCGATCTGTCTGTTGACTTT 58.346 45.455 0.00 0.00 43.29 2.66
240 241 2.351835 CGTCCGATCTGTCTGTTGACTT 60.352 50.000 0.00 0.00 43.29 3.01
241 242 1.200252 CGTCCGATCTGTCTGTTGACT 59.800 52.381 0.00 0.00 43.29 3.41
242 243 1.618861 CGTCCGATCTGTCTGTTGAC 58.381 55.000 0.00 0.00 43.20 3.18
243 244 0.526211 CCGTCCGATCTGTCTGTTGA 59.474 55.000 0.00 0.00 0.00 3.18
244 245 0.458543 CCCGTCCGATCTGTCTGTTG 60.459 60.000 0.00 0.00 0.00 3.33
245 246 1.605058 CCCCGTCCGATCTGTCTGTT 61.605 60.000 0.00 0.00 0.00 3.16
246 247 2.052690 CCCCGTCCGATCTGTCTGT 61.053 63.158 0.00 0.00 0.00 3.41
247 248 1.320344 TTCCCCGTCCGATCTGTCTG 61.320 60.000 0.00 0.00 0.00 3.51
248 249 1.000019 TTCCCCGTCCGATCTGTCT 60.000 57.895 0.00 0.00 0.00 3.41
249 250 1.437986 CTTCCCCGTCCGATCTGTC 59.562 63.158 0.00 0.00 0.00 3.51
250 251 2.722201 GCTTCCCCGTCCGATCTGT 61.722 63.158 0.00 0.00 0.00 3.41
251 252 2.107141 GCTTCCCCGTCCGATCTG 59.893 66.667 0.00 0.00 0.00 2.90
252 253 3.528370 CGCTTCCCCGTCCGATCT 61.528 66.667 0.00 0.00 0.00 2.75
260 261 4.473520 ATCCAGTGCGCTTCCCCG 62.474 66.667 9.73 0.00 0.00 5.73
261 262 2.514824 GATCCAGTGCGCTTCCCC 60.515 66.667 9.73 0.00 0.00 4.81
262 263 1.817099 CAGATCCAGTGCGCTTCCC 60.817 63.158 9.73 0.00 0.00 3.97
263 264 1.086634 GTCAGATCCAGTGCGCTTCC 61.087 60.000 9.73 0.00 0.00 3.46
264 265 1.416813 CGTCAGATCCAGTGCGCTTC 61.417 60.000 9.73 1.40 0.00 3.86
265 266 1.446792 CGTCAGATCCAGTGCGCTT 60.447 57.895 9.73 0.00 0.00 4.68
266 267 2.182791 CGTCAGATCCAGTGCGCT 59.817 61.111 9.73 0.00 0.00 5.92
267 268 2.887568 CCGTCAGATCCAGTGCGC 60.888 66.667 0.00 0.00 0.00 6.09
268 269 2.887568 GCCGTCAGATCCAGTGCG 60.888 66.667 0.00 0.00 0.00 5.34
269 270 1.812922 CAGCCGTCAGATCCAGTGC 60.813 63.158 0.00 0.00 0.00 4.40
270 271 1.153489 CCAGCCGTCAGATCCAGTG 60.153 63.158 0.00 0.00 0.00 3.66
271 272 1.610673 ACCAGCCGTCAGATCCAGT 60.611 57.895 0.00 0.00 0.00 4.00
272 273 1.153489 CACCAGCCGTCAGATCCAG 60.153 63.158 0.00 0.00 0.00 3.86
273 274 2.981302 CACCAGCCGTCAGATCCA 59.019 61.111 0.00 0.00 0.00 3.41
274 275 2.512515 GCACCAGCCGTCAGATCC 60.513 66.667 0.00 0.00 33.58 3.36
275 276 1.812922 CAGCACCAGCCGTCAGATC 60.813 63.158 0.00 0.00 43.56 2.75
276 277 2.267006 CAGCACCAGCCGTCAGAT 59.733 61.111 0.00 0.00 43.56 2.90
277 278 4.007644 CCAGCACCAGCCGTCAGA 62.008 66.667 0.00 0.00 43.56 3.27
278 279 4.007644 TCCAGCACCAGCCGTCAG 62.008 66.667 0.00 0.00 43.56 3.51
279 280 4.314440 GTCCAGCACCAGCCGTCA 62.314 66.667 0.00 0.00 43.56 4.35
291 292 3.491598 AACTGTTGGGCCGGTCCAG 62.492 63.158 29.72 19.84 38.17 3.86
292 293 3.494254 AACTGTTGGGCCGGTCCA 61.494 61.111 27.82 27.82 36.21 4.02
293 294 2.983592 CAACTGTTGGGCCGGTCC 60.984 66.667 21.35 21.35 0.00 4.46
326 327 1.024271 TTTTATGGGCGCTGATCTGC 58.976 50.000 14.16 14.16 0.00 4.26
327 328 3.996150 ATTTTTATGGGCGCTGATCTG 57.004 42.857 7.64 0.00 0.00 2.90
328 329 7.759489 TTTATATTTTTATGGGCGCTGATCT 57.241 32.000 7.64 0.00 0.00 2.75
329 330 7.542130 CCTTTTATATTTTTATGGGCGCTGATC 59.458 37.037 7.64 0.00 0.00 2.92
330 331 7.232534 TCCTTTTATATTTTTATGGGCGCTGAT 59.767 33.333 7.64 1.68 0.00 2.90
331 332 6.547880 TCCTTTTATATTTTTATGGGCGCTGA 59.452 34.615 7.64 0.00 0.00 4.26
332 333 6.744112 TCCTTTTATATTTTTATGGGCGCTG 58.256 36.000 7.64 0.00 0.00 5.18
333 334 6.969993 TCCTTTTATATTTTTATGGGCGCT 57.030 33.333 7.64 0.00 0.00 5.92
334 335 8.426881 TTTTCCTTTTATATTTTTATGGGCGC 57.573 30.769 0.00 0.00 0.00 6.53
335 336 9.040939 CCTTTTCCTTTTATATTTTTATGGGCG 57.959 33.333 0.00 0.00 0.00 6.13
413 414 7.334421 TCAAGAGTCCTAATCACTATTTTGTGC 59.666 37.037 0.00 0.00 37.81 4.57
569 623 0.978146 ATAGCCAGCAACCTCCGTCT 60.978 55.000 0.00 0.00 0.00 4.18
636 690 0.673985 TATCTCCCAATCTCGGCGTG 59.326 55.000 6.85 4.24 0.00 5.34
668 722 1.067846 CGTAGCTACTGTCTGCAACCA 60.068 52.381 21.20 0.00 0.00 3.67
751 805 4.493747 GAACGCGACCTCCTCCGG 62.494 72.222 15.93 0.00 0.00 5.14
814 868 4.149473 CCAAATGGATGAAGCAGAGGCG 62.149 54.545 0.00 0.00 41.00 5.52
874 929 2.884639 GTTGTATGCGCCCTTTATCCAT 59.115 45.455 4.18 0.00 0.00 3.41
986 1042 3.250617 AGCCCCATTTGTTCCTGAAAAT 58.749 40.909 0.00 0.00 0.00 1.82
1026 1082 5.126384 CGAGACTAGGTTGGAGAAGAGAATT 59.874 44.000 0.00 0.00 0.00 2.17
1027 1083 4.642885 CGAGACTAGGTTGGAGAAGAGAAT 59.357 45.833 0.00 0.00 0.00 2.40
1163 1219 1.207089 CGCACTGAACTCCCTTCCATA 59.793 52.381 0.00 0.00 0.00 2.74
1197 1253 6.841229 TGGAGTATGATAGATTGAGGTGAACT 59.159 38.462 0.00 0.00 0.00 3.01
1256 1312 4.491676 GAGTTGACGCAGGTACTTCATAA 58.508 43.478 0.00 0.00 34.60 1.90
1272 1328 3.059884 GTTGCTTGACAGATCGAGTTGA 58.940 45.455 6.00 0.00 38.49 3.18
1316 1372 4.787598 CAGAACACAATTGCCTAGTTCAC 58.212 43.478 23.59 8.94 40.63 3.18
1321 1377 3.503363 TCAAGCAGAACACAATTGCCTAG 59.497 43.478 5.05 0.00 38.58 3.02
1380 1436 3.234730 ACGAGGGATGCCGGGATC 61.235 66.667 26.54 26.54 0.00 3.36
1383 1439 3.740128 CTTCACGAGGGATGCCGGG 62.740 68.421 2.18 0.00 0.00 5.73
1387 1443 0.391661 TTCAGCTTCACGAGGGATGC 60.392 55.000 5.22 5.22 38.00 3.91
1422 1478 0.881796 GGGAGTTGCTGTACAAAGCC 59.118 55.000 4.79 0.00 42.83 4.35
1424 1480 3.070018 CTGAGGGAGTTGCTGTACAAAG 58.930 50.000 0.00 0.00 40.82 2.77
1464 1520 2.943033 CAGAAACCGGTTCTTGAACAGT 59.057 45.455 22.53 0.13 44.64 3.55
1537 1593 7.771927 ATTTCAGACTCTTCATTTCACCAAT 57.228 32.000 0.00 0.00 0.00 3.16
1653 1709 2.744202 CGGAAGACTCCCATTCAGTTTG 59.256 50.000 0.00 0.00 38.71 2.93
2007 2063 2.435059 GTGCCCTCGAGCTGGTTC 60.435 66.667 6.99 0.00 0.00 3.62
2168 2224 1.146263 GCCGACATTGGAGGTAGGG 59.854 63.158 0.00 0.00 32.37 3.53
2226 2282 2.567169 TGGTATGACTCCAGTGAACAGG 59.433 50.000 0.00 0.00 0.00 4.00
2334 2390 8.306313 AGTTCCAAACTTTCAATCTTTTACCT 57.694 30.769 0.00 0.00 39.04 3.08
2358 2414 5.104817 ACCATTGAGAAAATTATGCCCCAAG 60.105 40.000 0.00 0.00 0.00 3.61
2425 2481 5.047306 TGAGACTGTTGTTATGGAGACGAAT 60.047 40.000 0.00 0.00 0.00 3.34
2430 2486 4.021104 CCACTGAGACTGTTGTTATGGAGA 60.021 45.833 0.00 0.00 0.00 3.71
2444 2500 0.951040 CGGAACTTGCCCACTGAGAC 60.951 60.000 0.00 0.00 0.00 3.36
2525 2581 0.743097 GCCCAAGCTTGCAGGAATAG 59.257 55.000 21.43 4.56 35.50 1.73
2669 2725 4.154942 ACTGGAAATCTGTGCAGGAATTT 58.845 39.130 0.00 0.00 40.99 1.82
2744 2800 1.536766 GCTTGCATACTGTTGTGAGCA 59.463 47.619 0.00 0.00 36.18 4.26
2772 2828 3.002656 CCTGTAGCCGCAGATTTAACATG 59.997 47.826 6.69 0.00 38.70 3.21
2796 2852 6.566197 GGAATGCCTCCACTTAATCTATTG 57.434 41.667 0.00 0.00 44.67 1.90
2865 2921 1.912763 GCCCCCAAGAACATTGCCA 60.913 57.895 0.00 0.00 0.00 4.92
2883 2939 6.599445 AGTTCCTAATGATGAAGGGAGATTG 58.401 40.000 0.00 0.00 33.40 2.67
2884 2940 6.838401 AGTTCCTAATGATGAAGGGAGATT 57.162 37.500 0.00 0.00 33.40 2.40
2926 2982 4.402155 CCCATTGCTGCTAAGGTTTAATGA 59.598 41.667 0.00 0.00 0.00 2.57
2929 2985 2.495669 GCCCATTGCTGCTAAGGTTTAA 59.504 45.455 0.00 0.00 36.87 1.52
2952 3008 0.182061 GAGATGGAATGCTGCCCTCA 59.818 55.000 0.00 0.00 0.00 3.86
2977 3033 1.648467 GCAAGATCCACCAAGTCGCC 61.648 60.000 0.00 0.00 0.00 5.54
2980 3036 3.760684 AGATTTGCAAGATCCACCAAGTC 59.239 43.478 14.21 0.00 0.00 3.01
3000 3056 9.605275 CTGAGATTATTAACTGACAAATCCAGA 57.395 33.333 0.00 0.00 35.69 3.86
3001 3057 9.388506 ACTGAGATTATTAACTGACAAATCCAG 57.611 33.333 0.00 0.00 34.53 3.86
3003 3059 8.616076 CCACTGAGATTATTAACTGACAAATCC 58.384 37.037 0.00 0.00 0.00 3.01
3012 3068 7.560368 CAAGACTCCCACTGAGATTATTAACT 58.440 38.462 0.00 0.00 44.42 2.24
3014 3070 6.156949 AGCAAGACTCCCACTGAGATTATTAA 59.843 38.462 0.00 0.00 44.42 1.40
3031 3087 2.231721 GACTTCCTAACGGAGCAAGACT 59.768 50.000 0.00 0.00 41.25 3.24
3032 3088 2.231721 AGACTTCCTAACGGAGCAAGAC 59.768 50.000 0.00 0.00 41.25 3.01
3063 3119 7.068702 TGTTATTGGAAAGATTCAGGGCATAT 58.931 34.615 0.00 0.00 0.00 1.78
3067 3123 4.949856 TCTGTTATTGGAAAGATTCAGGGC 59.050 41.667 0.00 0.00 0.00 5.19
3122 3178 7.001674 ACTTGGTGTGGAATTCATAAACTGTA 58.998 34.615 7.93 0.00 0.00 2.74
3123 3179 5.833131 ACTTGGTGTGGAATTCATAAACTGT 59.167 36.000 7.93 0.62 0.00 3.55
3124 3180 6.331369 ACTTGGTGTGGAATTCATAAACTG 57.669 37.500 7.93 0.10 0.00 3.16
3125 3181 5.476945 GGACTTGGTGTGGAATTCATAAACT 59.523 40.000 7.93 0.00 0.00 2.66
3167 3223 4.128925 TCATGACAAGGCATACAGAGAC 57.871 45.455 0.00 0.00 0.00 3.36
3175 3231 2.811410 ACCAACATCATGACAAGGCAT 58.189 42.857 0.00 0.00 0.00 4.40
3178 3234 4.763793 AGAAGAACCAACATCATGACAAGG 59.236 41.667 0.00 0.25 0.00 3.61
3191 3247 2.586425 CTCCCTTGCAAGAAGAACCAA 58.414 47.619 28.05 1.83 0.00 3.67
3194 3250 1.902938 AGCTCCCTTGCAAGAAGAAC 58.097 50.000 28.05 17.65 34.99 3.01
3245 3301 1.546476 CTCGGCTGTGTACTCCTCTTT 59.454 52.381 0.00 0.00 0.00 2.52
3258 3314 3.254411 TCATAGCTATCTTGACTCGGCTG 59.746 47.826 2.34 0.00 0.00 4.85
3259 3315 3.491342 TCATAGCTATCTTGACTCGGCT 58.509 45.455 2.34 0.00 0.00 5.52
3300 3356 4.151335 CAGAGTATCATAAATGCACCGAGC 59.849 45.833 0.00 0.00 40.65 5.03
3301 3357 5.292765 ACAGAGTATCATAAATGCACCGAG 58.707 41.667 0.00 0.00 37.82 4.63
3303 3359 7.093354 AGATACAGAGTATCATAAATGCACCG 58.907 38.462 16.79 0.00 37.82 4.94
3411 3467 9.447157 TCAAAGTTTTCAATTGATTCCAAAACT 57.553 25.926 21.41 21.41 45.04 2.66
3425 3481 8.681806 TGATGTACTTGTCATCAAAGTTTTCAA 58.318 29.630 6.20 0.00 45.40 2.69
3675 3731 4.499188 CCATGCAGAACATCATAAAGGCTG 60.499 45.833 0.00 0.00 36.64 4.85
3702 3758 0.102120 CTAGAACTGGAGCTGGCTCG 59.898 60.000 15.15 6.28 43.59 5.03
3837 3893 7.633018 AATATGTGGTACCATGTCCTTATCT 57.367 36.000 19.72 2.59 0.00 1.98
3852 3908 4.406456 TGCCAAAGTCTGAAATATGTGGT 58.594 39.130 0.00 0.00 0.00 4.16
3894 3950 2.305343 AGTTTCTGAAGCAGCAGGAGAT 59.695 45.455 7.01 0.00 36.55 2.75
4067 4128 6.875726 TCAAGGTTCTGATGTCATTACTTCTG 59.124 38.462 0.00 0.00 32.39 3.02
4069 4130 7.768120 AGATCAAGGTTCTGATGTCATTACTTC 59.232 37.037 0.00 0.00 36.15 3.01
4072 4133 6.820656 ACAGATCAAGGTTCTGATGTCATTAC 59.179 38.462 7.63 0.00 42.63 1.89
4118 4179 9.959721 TGAATAAGCTAAATTCTAACAAGGACT 57.040 29.630 17.83 0.00 34.95 3.85
4129 4190 9.574458 GTTTCTTCCCTTGAATAAGCTAAATTC 57.426 33.333 12.62 12.62 34.55 2.17
4185 4246 1.640670 AGGATGGGGCAACTATTGTGT 59.359 47.619 0.00 0.00 0.00 3.72
4188 4249 3.131046 GTCAAAGGATGGGGCAACTATTG 59.869 47.826 0.00 0.00 0.00 1.90
4199 4260 4.678840 GCAAGCCTATTTGTCAAAGGATGG 60.679 45.833 7.40 0.19 31.64 3.51
4204 4265 7.487189 CAGATTTAGCAAGCCTATTTGTCAAAG 59.513 37.037 4.03 0.00 0.00 2.77
4309 4408 4.006989 AGAAGTTGCGGTTGTATATGCAA 58.993 39.130 1.68 1.68 44.34 4.08
4320 4419 4.642429 ACTGATTAGAAAGAAGTTGCGGT 58.358 39.130 0.00 0.00 0.00 5.68
4336 4435 8.696374 CCATACGGTCCATTAGATATACTGATT 58.304 37.037 0.00 0.00 0.00 2.57
4337 4436 7.839705 ACCATACGGTCCATTAGATATACTGAT 59.160 37.037 0.00 0.00 44.71 2.90
4354 4495 4.704374 ATCTCTGCCAGAAACCATACGGT 61.704 47.826 0.00 0.00 39.40 4.83
4357 4498 3.209410 CCATCTCTGCCAGAAACCATAC 58.791 50.000 0.00 0.00 33.62 2.39
4399 4540 3.898529 AGCTGTACACGTTGAACTCTAC 58.101 45.455 0.00 0.00 0.00 2.59
4401 4542 4.486090 CATAGCTGTACACGTTGAACTCT 58.514 43.478 0.00 0.00 0.00 3.24
4408 4549 2.094182 CCACTCCATAGCTGTACACGTT 60.094 50.000 0.00 0.00 0.00 3.99
4422 4563 4.338012 TCAGTTCGAGTAATACCACTCCA 58.662 43.478 0.00 0.00 41.65 3.86
4437 4578 4.034510 GCCATCTTTCTGGTAATCAGTTCG 59.965 45.833 0.00 0.00 43.76 3.95
4473 4614 6.070021 TGACTAGATCCACATTGTCAGGAAAT 60.070 38.462 0.00 0.00 34.62 2.17
4476 4617 4.352893 TGACTAGATCCACATTGTCAGGA 58.647 43.478 0.00 0.00 35.59 3.86
4480 4621 4.118410 CAGCTGACTAGATCCACATTGTC 58.882 47.826 8.42 0.00 0.00 3.18
4483 4624 2.437281 CCCAGCTGACTAGATCCACATT 59.563 50.000 17.39 0.00 0.00 2.71
4491 4632 2.158445 GGAGGATACCCAGCTGACTAGA 60.158 54.545 17.39 0.00 33.88 2.43
4516 4657 4.522114 TCGATTATGTTGCCCTCATTCAA 58.478 39.130 0.00 0.00 0.00 2.69
4531 4672 3.123804 GGTCGCACACTGATTCGATTAT 58.876 45.455 0.00 0.00 33.37 1.28
4533 4674 1.359848 GGTCGCACACTGATTCGATT 58.640 50.000 0.00 0.00 33.37 3.34
4542 4683 1.599606 CTAGAGCAGGGTCGCACACT 61.600 60.000 0.00 0.00 26.76 3.55
4557 4698 1.749063 CCACATACCTCACGCACTAGA 59.251 52.381 0.00 0.00 0.00 2.43
4561 4702 1.375396 TGCCACATACCTCACGCAC 60.375 57.895 0.00 0.00 0.00 5.34
4590 4731 2.099141 GCACACTGCATACTTCCTCA 57.901 50.000 0.00 0.00 44.26 3.86
4641 4782 1.380302 GGAAGGCCTCTTTCCTGCA 59.620 57.895 13.91 0.00 33.43 4.41
4645 4786 2.305009 CATCATGGAAGGCCTCTTTCC 58.695 52.381 14.25 14.25 32.52 3.13
4648 4789 1.600058 TCCATCATGGAAGGCCTCTT 58.400 50.000 5.23 0.00 45.00 2.85
4698 4839 3.692576 CTTCGGTAGTGATACAACCTCG 58.307 50.000 0.00 0.00 0.00 4.63
4701 4842 3.187700 CTGCTTCGGTAGTGATACAACC 58.812 50.000 0.00 0.00 0.00 3.77
4710 4851 1.269998 GATATCGCCTGCTTCGGTAGT 59.730 52.381 0.00 0.00 0.00 2.73
4911 5054 2.894126 TGCATTTCCCCTTTAAAAGCGA 59.106 40.909 0.00 0.00 34.24 4.93
4913 5056 3.260632 TCCTGCATTTCCCCTTTAAAAGC 59.739 43.478 0.00 0.00 32.64 3.51
4924 5067 6.405538 TGGATTGTAAAATTCCTGCATTTCC 58.594 36.000 0.00 0.00 30.78 3.13
4925 5068 7.099120 ACTGGATTGTAAAATTCCTGCATTTC 58.901 34.615 0.00 0.00 33.02 2.17
5038 5181 8.375465 GTCAAATCAAAGTCAAACAAAGTGAAG 58.625 33.333 0.00 0.00 0.00 3.02
5047 5190 7.411804 CCAAACACAGTCAAATCAAAGTCAAAC 60.412 37.037 0.00 0.00 0.00 2.93
5139 5318 4.889995 GGAATAGAAAACAGAGGATTGGGG 59.110 45.833 0.00 0.00 0.00 4.96
5142 5321 9.050601 GTGATAGGAATAGAAAACAGAGGATTG 57.949 37.037 0.00 0.00 0.00 2.67
5154 5333 6.499106 TGCAGGATTGTGATAGGAATAGAA 57.501 37.500 0.00 0.00 0.00 2.10
5185 5364 9.431887 TCACAATATTCTAAAAGCGTAGAAACT 57.568 29.630 10.36 1.03 42.04 2.66
5205 5384 1.369625 GGGCGTCTTCGATTCACAAT 58.630 50.000 0.00 0.00 39.71 2.71
5215 5394 1.287425 CGTCTTATTGGGGCGTCTTC 58.713 55.000 0.00 0.00 0.00 2.87
5234 5413 3.447229 CCCAACCCAAGATTGTTATGTCC 59.553 47.826 0.00 0.00 0.00 4.02
5235 5414 3.119137 GCCCAACCCAAGATTGTTATGTC 60.119 47.826 0.00 0.00 0.00 3.06
5236 5415 2.831526 GCCCAACCCAAGATTGTTATGT 59.168 45.455 0.00 0.00 0.00 2.29
5237 5416 3.099141 AGCCCAACCCAAGATTGTTATG 58.901 45.455 0.00 0.00 0.00 1.90
5254 5438 2.496817 CGTACTGCAGAGGAGCCC 59.503 66.667 23.35 0.00 0.00 5.19
5255 5439 1.889530 AACCGTACTGCAGAGGAGCC 61.890 60.000 23.35 0.00 0.00 4.70
5335 5519 3.455085 AAGATAATTGAGGGAGGGGGA 57.545 47.619 0.00 0.00 0.00 4.81
5336 5520 5.867757 AATAAGATAATTGAGGGAGGGGG 57.132 43.478 0.00 0.00 0.00 5.40
5337 5521 7.885399 CAGTTAATAAGATAATTGAGGGAGGGG 59.115 40.741 0.00 0.00 0.00 4.79
5338 5522 7.885399 CCAGTTAATAAGATAATTGAGGGAGGG 59.115 40.741 0.00 0.00 0.00 4.30
5339 5523 8.660435 TCCAGTTAATAAGATAATTGAGGGAGG 58.340 37.037 0.00 0.00 0.00 4.30
5351 5535 8.793592 GTGGTGTTTTCTTCCAGTTAATAAGAT 58.206 33.333 0.00 0.00 31.54 2.40
5352 5536 7.776030 TGTGGTGTTTTCTTCCAGTTAATAAGA 59.224 33.333 0.00 0.00 31.54 2.10
5353 5537 7.936584 TGTGGTGTTTTCTTCCAGTTAATAAG 58.063 34.615 0.00 0.00 31.54 1.73
5354 5538 7.013846 CCTGTGGTGTTTTCTTCCAGTTAATAA 59.986 37.037 0.00 0.00 31.54 1.40
5355 5539 6.488683 CCTGTGGTGTTTTCTTCCAGTTAATA 59.511 38.462 0.00 0.00 31.54 0.98
5356 5540 5.301805 CCTGTGGTGTTTTCTTCCAGTTAAT 59.698 40.000 0.00 0.00 31.54 1.40
5357 5541 4.642885 CCTGTGGTGTTTTCTTCCAGTTAA 59.357 41.667 0.00 0.00 31.54 2.01
5358 5542 4.204012 CCTGTGGTGTTTTCTTCCAGTTA 58.796 43.478 0.00 0.00 31.54 2.24
5359 5543 3.023832 CCTGTGGTGTTTTCTTCCAGTT 58.976 45.455 0.00 0.00 31.54 3.16
5360 5544 2.654863 CCTGTGGTGTTTTCTTCCAGT 58.345 47.619 0.00 0.00 31.54 4.00
5361 5545 1.956477 CCCTGTGGTGTTTTCTTCCAG 59.044 52.381 0.00 0.00 31.54 3.86
5362 5546 1.566703 TCCCTGTGGTGTTTTCTTCCA 59.433 47.619 0.00 0.00 0.00 3.53
5363 5547 2.358322 TCCCTGTGGTGTTTTCTTCC 57.642 50.000 0.00 0.00 0.00 3.46
5364 5548 3.288092 ACTTCCCTGTGGTGTTTTCTTC 58.712 45.455 0.00 0.00 0.00 2.87
5365 5549 3.382083 ACTTCCCTGTGGTGTTTTCTT 57.618 42.857 0.00 0.00 0.00 2.52
5366 5550 3.382083 AACTTCCCTGTGGTGTTTTCT 57.618 42.857 0.00 0.00 0.00 2.52
5367 5551 4.457466 TCTAACTTCCCTGTGGTGTTTTC 58.543 43.478 0.00 0.00 33.73 2.29
5368 5552 4.165372 TCTCTAACTTCCCTGTGGTGTTTT 59.835 41.667 0.00 0.00 33.73 2.43
5369 5553 3.714798 TCTCTAACTTCCCTGTGGTGTTT 59.285 43.478 0.00 0.00 33.73 2.83
5370 5554 3.071167 GTCTCTAACTTCCCTGTGGTGTT 59.929 47.826 0.00 0.00 35.10 3.32
5371 5555 2.633481 GTCTCTAACTTCCCTGTGGTGT 59.367 50.000 0.00 0.00 0.00 4.16
5372 5556 2.352814 CGTCTCTAACTTCCCTGTGGTG 60.353 54.545 0.00 0.00 0.00 4.17
5373 5557 1.893801 CGTCTCTAACTTCCCTGTGGT 59.106 52.381 0.00 0.00 0.00 4.16
5374 5558 1.404315 GCGTCTCTAACTTCCCTGTGG 60.404 57.143 0.00 0.00 0.00 4.17
5375 5559 1.732732 CGCGTCTCTAACTTCCCTGTG 60.733 57.143 0.00 0.00 0.00 3.66
5376 5560 0.526662 CGCGTCTCTAACTTCCCTGT 59.473 55.000 0.00 0.00 0.00 4.00
5377 5561 0.802607 GCGCGTCTCTAACTTCCCTG 60.803 60.000 8.43 0.00 0.00 4.45
5378 5562 1.511768 GCGCGTCTCTAACTTCCCT 59.488 57.895 8.43 0.00 0.00 4.20
5379 5563 1.872679 CGCGCGTCTCTAACTTCCC 60.873 63.158 24.19 0.00 0.00 3.97
5380 5564 2.506345 GCGCGCGTCTCTAACTTCC 61.506 63.158 32.35 5.70 0.00 3.46
5381 5565 2.506345 GGCGCGCGTCTCTAACTTC 61.506 63.158 32.35 10.04 0.00 3.01
5382 5566 2.506438 GGCGCGCGTCTCTAACTT 60.506 61.111 32.35 0.00 0.00 2.66
5383 5567 4.831307 CGGCGCGCGTCTCTAACT 62.831 66.667 33.00 0.00 0.00 2.24
5412 5596 2.269241 GGAACCTGGAAGCCGGAG 59.731 66.667 5.05 0.00 29.82 4.63
5413 5597 2.528127 TGGAACCTGGAAGCCGGA 60.528 61.111 5.05 0.00 29.82 5.14
5414 5598 2.045926 CTGGAACCTGGAAGCCGG 60.046 66.667 0.00 0.00 0.00 6.13
5415 5599 2.747855 GCTGGAACCTGGAAGCCG 60.748 66.667 0.00 0.00 0.00 5.52
5416 5600 2.747855 CGCTGGAACCTGGAAGCC 60.748 66.667 0.00 0.00 31.84 4.35
5417 5601 3.435186 GCGCTGGAACCTGGAAGC 61.435 66.667 0.00 3.09 0.00 3.86
5418 5602 2.747855 GGCGCTGGAACCTGGAAG 60.748 66.667 7.64 0.00 0.00 3.46
5419 5603 4.697756 CGGCGCTGGAACCTGGAA 62.698 66.667 8.83 0.00 0.00 3.53
5436 5620 4.451150 TGGACGATCGTGCTGGCC 62.451 66.667 34.49 24.49 37.36 5.36
5437 5621 3.188786 GTGGACGATCGTGCTGGC 61.189 66.667 34.49 22.44 37.36 4.85
5438 5622 0.102300 TATGTGGACGATCGTGCTGG 59.898 55.000 34.49 1.27 37.36 4.85
5439 5623 1.481240 CTATGTGGACGATCGTGCTG 58.519 55.000 34.49 18.13 37.36 4.41
5440 5624 0.249073 GCTATGTGGACGATCGTGCT 60.249 55.000 34.49 20.56 37.36 4.40
5441 5625 0.249073 AGCTATGTGGACGATCGTGC 60.249 55.000 30.05 30.05 36.97 5.34
5442 5626 1.202302 ACAGCTATGTGGACGATCGTG 60.202 52.381 28.12 10.43 38.57 4.35
5443 5627 1.103803 ACAGCTATGTGGACGATCGT 58.896 50.000 22.97 22.97 38.57 3.73
5444 5628 3.946950 ACAGCTATGTGGACGATCG 57.053 52.632 14.88 14.88 38.57 3.69
5453 5637 1.741706 GCTTCACATGCACAGCTATGT 59.258 47.619 0.00 0.00 41.57 2.29
5454 5638 1.065102 GGCTTCACATGCACAGCTATG 59.935 52.381 9.71 0.00 32.52 2.23
5455 5639 1.386533 GGCTTCACATGCACAGCTAT 58.613 50.000 9.71 0.00 32.52 2.97
5456 5640 1.020861 CGGCTTCACATGCACAGCTA 61.021 55.000 9.71 0.00 32.52 3.32
5457 5641 2.330372 CGGCTTCACATGCACAGCT 61.330 57.895 9.71 0.00 32.52 4.24
5458 5642 2.177531 CGGCTTCACATGCACAGC 59.822 61.111 0.00 0.00 0.00 4.40
5459 5643 2.693762 CCCGGCTTCACATGCACAG 61.694 63.158 0.00 0.00 0.00 3.66
5460 5644 2.672651 CCCGGCTTCACATGCACA 60.673 61.111 0.00 0.00 0.00 4.57
5461 5645 4.120331 GCCCGGCTTCACATGCAC 62.120 66.667 0.71 0.00 0.00 4.57
5462 5646 4.657408 TGCCCGGCTTCACATGCA 62.657 61.111 11.61 0.00 0.00 3.96
5463 5647 4.120331 GTGCCCGGCTTCACATGC 62.120 66.667 11.61 2.03 33.63 4.06
5464 5648 3.803082 CGTGCCCGGCTTCACATG 61.803 66.667 11.61 0.00 33.03 3.21
5479 5663 1.595929 CGTAACCCAACACAGCCGT 60.596 57.895 0.00 0.00 0.00 5.68
5480 5664 0.319727 TACGTAACCCAACACAGCCG 60.320 55.000 0.00 0.00 0.00 5.52
5481 5665 1.270465 ACTACGTAACCCAACACAGCC 60.270 52.381 0.00 0.00 0.00 4.85
5482 5666 2.159327 ACTACGTAACCCAACACAGC 57.841 50.000 0.00 0.00 0.00 4.40
5483 5667 6.424509 TGAAATTACTACGTAACCCAACACAG 59.575 38.462 0.00 0.00 30.49 3.66
5484 5668 6.286758 TGAAATTACTACGTAACCCAACACA 58.713 36.000 0.00 0.00 30.49 3.72
5641 5825 3.625764 GCCATAGTTTCGGTGCTTGATTA 59.374 43.478 0.00 0.00 0.00 1.75
5642 5826 2.423538 GCCATAGTTTCGGTGCTTGATT 59.576 45.455 0.00 0.00 0.00 2.57
5660 5844 1.605058 GCTAGAACTCGGAGGTGCCA 61.605 60.000 10.23 0.00 35.94 4.92
5707 5891 1.072331 ACACTTTGCTGGATCGGAGTT 59.928 47.619 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.