Multiple sequence alignment - TraesCS7A01G202700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G202700 chr7A 100.000 2898 0 0 1 2898 164403272 164400375 0.000000e+00 5352.0
1 TraesCS7A01G202700 chr7A 100.000 1777 0 0 3300 5076 164399973 164398197 0.000000e+00 3282.0
2 TraesCS7A01G202700 chr7A 87.356 174 16 2 2544 2716 418193898 418193730 1.440000e-45 195.0
3 TraesCS7A01G202700 chr7D 93.447 1755 76 17 3345 5076 163256853 163255115 0.000000e+00 2567.0
4 TraesCS7A01G202700 chr7D 95.526 1140 39 6 812 1943 163258914 163257779 0.000000e+00 1812.0
5 TraesCS7A01G202700 chr7D 93.765 417 22 3 91 505 163287832 163287418 1.550000e-174 623.0
6 TraesCS7A01G202700 chr7D 91.832 404 23 4 1942 2340 163257733 163257335 5.740000e-154 555.0
7 TraesCS7A01G202700 chr7D 90.879 307 24 3 531 834 163287290 163286985 4.730000e-110 409.0
8 TraesCS7A01G202700 chr7D 95.918 98 4 0 1 98 163338066 163337969 5.260000e-35 159.0
9 TraesCS7A01G202700 chr7B 93.972 1659 66 16 3431 5076 125504589 125502952 0.000000e+00 2479.0
10 TraesCS7A01G202700 chr7B 96.120 1134 39 2 812 1944 125506652 125505523 0.000000e+00 1845.0
11 TraesCS7A01G202700 chr7B 95.000 500 21 2 2 500 125523808 125523312 0.000000e+00 782.0
12 TraesCS7A01G202700 chr7B 88.689 389 21 6 1947 2331 125505473 125505104 2.150000e-123 453.0
13 TraesCS7A01G202700 chr7B 84.400 250 15 4 531 757 125523178 125522930 1.840000e-54 224.0
14 TraesCS7A01G202700 chr6D 81.559 667 92 23 1046 1701 385955824 385956470 5.820000e-144 521.0
15 TraesCS7A01G202700 chr6B 81.024 664 100 19 1046 1701 576362024 576362669 5.870000e-139 505.0
16 TraesCS7A01G202700 chr6A 80.873 664 102 20 1046 1701 530279194 530279840 2.730000e-137 499.0
17 TraesCS7A01G202700 chr1A 90.857 175 13 3 2541 2714 52841569 52841397 1.100000e-56 231.0
18 TraesCS7A01G202700 chr1A 88.827 179 17 3 2541 2718 535285267 535285091 3.080000e-52 217.0
19 TraesCS7A01G202700 chr2A 89.130 184 18 2 2532 2714 702558800 702558982 1.420000e-55 228.0
20 TraesCS7A01G202700 chr5B 88.710 186 16 4 2532 2715 622202858 622203040 6.610000e-54 222.0
21 TraesCS7A01G202700 chr2B 91.411 163 11 3 2554 2714 777669487 777669326 2.380000e-53 220.0
22 TraesCS7A01G202700 chr3A 88.235 187 16 5 2532 2714 749179109 749179293 8.560000e-53 219.0
23 TraesCS7A01G202700 chr3A 87.912 182 14 7 2541 2719 496028327 496028151 1.850000e-49 207.0
24 TraesCS7A01G202700 chr4A 88.439 173 16 4 2545 2714 534232712 534232541 6.660000e-49 206.0
25 TraesCS7A01G202700 chr4A 85.876 177 20 4 2541 2714 19624540 19624366 3.120000e-42 183.0
26 TraesCS7A01G202700 chr4A 97.222 36 1 0 676 711 91473021 91472986 1.530000e-05 62.1
27 TraesCS7A01G202700 chr4B 96.970 33 1 0 678 710 633752743 633752711 7.100000e-04 56.5
28 TraesCS7A01G202700 chr2D 90.476 42 4 0 679 720 71835138 71835097 7.100000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G202700 chr7A 164398197 164403272 5075 True 4317.000000 5352 100.000000 1 5076 2 chr7A.!!$R2 5075
1 TraesCS7A01G202700 chr7D 163255115 163258914 3799 True 1644.666667 2567 93.601667 812 5076 3 chr7D.!!$R2 4264
2 TraesCS7A01G202700 chr7D 163286985 163287832 847 True 516.000000 623 92.322000 91 834 2 chr7D.!!$R3 743
3 TraesCS7A01G202700 chr7B 125502952 125506652 3700 True 1592.333333 2479 92.927000 812 5076 3 chr7B.!!$R1 4264
4 TraesCS7A01G202700 chr7B 125522930 125523808 878 True 503.000000 782 89.700000 2 757 2 chr7B.!!$R2 755
5 TraesCS7A01G202700 chr6D 385955824 385956470 646 False 521.000000 521 81.559000 1046 1701 1 chr6D.!!$F1 655
6 TraesCS7A01G202700 chr6B 576362024 576362669 645 False 505.000000 505 81.024000 1046 1701 1 chr6B.!!$F1 655
7 TraesCS7A01G202700 chr6A 530279194 530279840 646 False 499.000000 499 80.873000 1046 1701 1 chr6A.!!$F1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 425 0.191064 TCTCCAACCCTCTGGACTGT 59.809 55.0 0.0 0.0 40.71 3.55 F
2054 2238 0.447801 CGGACGCTGAAGAAAATGGG 59.552 55.0 0.0 0.0 0.00 4.00 F
2431 2652 0.035458 GACCACTTGTGCTAGGTGCT 59.965 55.0 0.0 0.0 43.37 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 2585 0.034337 AAGGCAGCCTGCATTTTGTG 59.966 50.0 17.05 0.0 45.82 3.33 R
3965 4220 0.392461 TTCTCGGCTTGAATTCGGGG 60.392 55.0 0.04 0.0 0.00 5.73 R
4392 4665 0.755686 GCCCATCACACCAACCAAAA 59.244 50.0 0.00 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 6.014771 ACCTTGGAATCCCCTAATCTTAAC 57.985 41.667 0.00 0.00 35.38 2.01
246 247 9.196139 CAATTCATTAAGGGAAGGTATTACCAA 57.804 33.333 15.19 0.00 42.67 3.67
256 257 6.436218 GGGAAGGTATTACCAAACTTGTTGAT 59.564 38.462 15.19 0.00 41.95 2.57
353 355 4.393371 CCTCTTCTTTCGAGGGATTTTGAC 59.607 45.833 0.00 0.00 43.47 3.18
358 360 0.251916 TCGAGGGATTTTGACGCCAT 59.748 50.000 0.00 0.00 0.00 4.40
423 425 0.191064 TCTCCAACCCTCTGGACTGT 59.809 55.000 0.00 0.00 40.71 3.55
525 552 2.041620 TGAGGGGCTATTGCAGTCTTTT 59.958 45.455 0.66 0.00 41.91 2.27
526 553 3.092301 GAGGGGCTATTGCAGTCTTTTT 58.908 45.455 0.66 0.00 41.91 1.94
553 659 8.106247 TGGAAGGAAAACACAATTAGTATGAC 57.894 34.615 0.00 0.00 0.00 3.06
712 840 4.026804 CCATATTACTTGTCGCTCGAACAC 60.027 45.833 0.00 0.00 0.00 3.32
780 910 3.509967 ACATCATCTGTTACCTCACGTGA 59.490 43.478 18.88 18.88 32.90 4.35
793 923 4.223032 ACCTCACGTGATAGGATGAAAACT 59.777 41.667 25.82 2.82 36.66 2.66
814 944 3.552604 TGAAAAGTAAGATGCGTTGGC 57.447 42.857 0.00 0.00 40.52 4.52
815 945 2.095969 TGAAAAGTAAGATGCGTTGGCG 60.096 45.455 0.00 0.00 44.10 5.69
848 978 7.331193 CCAGTATTATTAACCCGAGTGATTAGC 59.669 40.741 0.00 0.00 0.00 3.09
849 979 8.088981 CAGTATTATTAACCCGAGTGATTAGCT 58.911 37.037 0.00 0.00 0.00 3.32
850 980 8.648693 AGTATTATTAACCCGAGTGATTAGCTT 58.351 33.333 0.00 0.00 0.00 3.74
851 981 7.964604 ATTATTAACCCGAGTGATTAGCTTC 57.035 36.000 0.00 0.00 0.00 3.86
875 1005 4.606210 TCCTTATAAACCCTTTCAAGCCC 58.394 43.478 0.00 0.00 0.00 5.19
884 1014 1.351017 CCTTTCAAGCCCACTCCACTA 59.649 52.381 0.00 0.00 0.00 2.74
892 1022 0.608640 CCCACTCCACTACACACTCC 59.391 60.000 0.00 0.00 0.00 3.85
930 1060 3.267860 CCATTCTGCTCCGCGCTC 61.268 66.667 5.56 0.00 40.11 5.03
992 1122 2.048127 ACGTCCAAGCCGAGAAGC 60.048 61.111 0.00 0.00 0.00 3.86
1708 1838 4.776322 TCTGGTCCAATGCCGGCG 62.776 66.667 23.90 7.44 32.54 6.46
1800 1936 2.829914 GGCAATGGCATCGCTGGA 60.830 61.111 10.66 0.00 43.71 3.86
2054 2238 0.447801 CGGACGCTGAAGAAAATGGG 59.552 55.000 0.00 0.00 0.00 4.00
2077 2261 3.338250 ATTTCGGGAGCCCTGCCA 61.338 61.111 6.64 0.00 41.64 4.92
2103 2287 3.328505 CAATCCGGTTACTTGTTACGGT 58.671 45.455 0.00 0.00 44.54 4.83
2104 2288 3.683365 ATCCGGTTACTTGTTACGGTT 57.317 42.857 0.00 0.00 44.54 4.44
2105 2289 3.467374 TCCGGTTACTTGTTACGGTTT 57.533 42.857 0.00 0.00 44.54 3.27
2106 2290 3.389221 TCCGGTTACTTGTTACGGTTTC 58.611 45.455 0.00 0.00 44.54 2.78
2107 2291 2.480037 CCGGTTACTTGTTACGGTTTCC 59.520 50.000 0.00 0.00 39.70 3.13
2123 2307 6.966021 ACGGTTTCCAAATCCGAATATATTG 58.034 36.000 14.28 0.00 46.05 1.90
2138 2322 6.857964 CGAATATATTGGTTGGATCTTGCAAC 59.142 38.462 1.78 3.59 46.14 4.17
2180 2365 3.121894 GCACTACGCGTACGATACAATTC 60.122 47.826 21.65 0.00 43.93 2.17
2211 2396 1.677576 TGAGACGGGCGTACGATTATT 59.322 47.619 21.65 0.00 37.61 1.40
2217 2402 3.062504 ACGGGCGTACGATTATTTTTGTC 59.937 43.478 21.65 0.00 37.61 3.18
2262 2450 3.197766 AGGCCACTATCGAAAACAGATCA 59.802 43.478 5.01 0.00 0.00 2.92
2304 2492 0.672342 GTACACACCACCTCGTGTCT 59.328 55.000 0.00 0.00 45.14 3.41
2306 2494 0.959553 ACACACCACCTCGTGTCTAG 59.040 55.000 0.00 0.00 45.14 2.43
2314 2502 1.107114 CCTCGTGTCTAGGTCTGCAT 58.893 55.000 0.00 0.00 0.00 3.96
2324 2512 3.969312 TCTAGGTCTGCATCATGATGGAA 59.031 43.478 31.62 18.97 38.67 3.53
2332 2521 3.818773 TGCATCATGATGGAAGCACATAG 59.181 43.478 31.62 7.27 36.67 2.23
2334 2523 4.700692 GCATCATGATGGAAGCACATAGAT 59.299 41.667 31.62 0.00 30.93 1.98
2335 2524 5.183331 GCATCATGATGGAAGCACATAGATT 59.817 40.000 31.62 0.00 30.93 2.40
2337 2526 7.094506 GCATCATGATGGAAGCACATAGATTTA 60.095 37.037 31.62 0.00 30.93 1.40
2338 2527 7.974482 TCATGATGGAAGCACATAGATTTAG 57.026 36.000 0.00 0.00 30.93 1.85
2339 2528 6.938596 TCATGATGGAAGCACATAGATTTAGG 59.061 38.462 0.00 0.00 30.93 2.69
2340 2529 5.065914 TGATGGAAGCACATAGATTTAGGC 58.934 41.667 0.00 0.00 0.00 3.93
2343 2563 5.509498 TGGAAGCACATAGATTTAGGCTTT 58.491 37.500 0.00 0.00 41.24 3.51
2361 2581 6.472887 AGGCTTTCTACAGTTGCTATTTACA 58.527 36.000 0.00 0.00 0.00 2.41
2362 2582 6.940298 AGGCTTTCTACAGTTGCTATTTACAA 59.060 34.615 0.00 0.00 0.00 2.41
2363 2583 7.447238 AGGCTTTCTACAGTTGCTATTTACAAA 59.553 33.333 0.00 0.00 0.00 2.83
2364 2584 8.079809 GGCTTTCTACAGTTGCTATTTACAAAA 58.920 33.333 0.00 0.00 0.00 2.44
2365 2585 8.902735 GCTTTCTACAGTTGCTATTTACAAAAC 58.097 33.333 0.00 0.00 0.00 2.43
2366 2586 9.944663 CTTTCTACAGTTGCTATTTACAAAACA 57.055 29.630 0.00 0.00 0.00 2.83
2367 2587 9.724839 TTTCTACAGTTGCTATTTACAAAACAC 57.275 29.630 0.00 0.00 0.00 3.32
2378 2598 5.476752 TTTACAAAACACAAAATGCAGGC 57.523 34.783 0.00 0.00 0.00 4.85
2404 2625 7.142680 TGCCTTTTCTTCAGGTTTAATTTACG 58.857 34.615 0.00 0.00 33.40 3.18
2408 2629 9.166126 CTTTTCTTCAGGTTTAATTTACGTGTC 57.834 33.333 0.00 0.00 34.11 3.67
2409 2630 8.441312 TTTCTTCAGGTTTAATTTACGTGTCT 57.559 30.769 0.00 0.00 34.11 3.41
2412 2633 9.146984 TCTTCAGGTTTAATTTACGTGTCTATG 57.853 33.333 0.00 0.00 34.11 2.23
2413 2634 9.146984 CTTCAGGTTTAATTTACGTGTCTATGA 57.853 33.333 0.00 0.00 34.11 2.15
2414 2635 8.470040 TCAGGTTTAATTTACGTGTCTATGAC 57.530 34.615 0.00 0.00 34.11 3.06
2419 2640 8.715088 GTTTAATTTACGTGTCTATGACCACTT 58.285 33.333 0.00 0.00 0.00 3.16
2420 2641 6.721571 AATTTACGTGTCTATGACCACTTG 57.278 37.500 0.00 0.00 0.00 3.16
2421 2642 4.859304 TTACGTGTCTATGACCACTTGT 57.141 40.909 0.00 0.00 0.00 3.16
2422 2643 3.026630 ACGTGTCTATGACCACTTGTG 57.973 47.619 0.00 0.00 0.00 3.33
2423 2644 1.726791 CGTGTCTATGACCACTTGTGC 59.273 52.381 0.00 0.00 0.00 4.57
2424 2645 2.610479 CGTGTCTATGACCACTTGTGCT 60.610 50.000 0.00 0.00 0.00 4.40
2425 2646 3.366985 CGTGTCTATGACCACTTGTGCTA 60.367 47.826 0.00 0.00 0.00 3.49
2426 2647 4.177026 GTGTCTATGACCACTTGTGCTAG 58.823 47.826 0.00 0.00 0.00 3.42
2427 2648 3.195610 TGTCTATGACCACTTGTGCTAGG 59.804 47.826 0.00 0.00 0.00 3.02
2428 2649 3.195825 GTCTATGACCACTTGTGCTAGGT 59.804 47.826 0.00 0.00 37.00 3.08
2431 2652 0.035458 GACCACTTGTGCTAGGTGCT 59.965 55.000 0.00 0.00 43.37 4.40
2432 2653 0.474184 ACCACTTGTGCTAGGTGCTT 59.526 50.000 0.00 0.00 43.37 3.91
2433 2654 0.877071 CCACTTGTGCTAGGTGCTTG 59.123 55.000 0.00 0.00 43.37 4.01
2434 2655 0.877071 CACTTGTGCTAGGTGCTTGG 59.123 55.000 0.00 0.00 43.37 3.61
2435 2656 0.890996 ACTTGTGCTAGGTGCTTGGC 60.891 55.000 0.00 0.00 43.37 4.52
2436 2657 0.607489 CTTGTGCTAGGTGCTTGGCT 60.607 55.000 0.00 0.00 43.37 4.75
2438 2659 2.103042 GTGCTAGGTGCTTGGCTCG 61.103 63.158 0.00 0.00 43.37 5.03
2439 2660 2.266055 GCTAGGTGCTTGGCTCGT 59.734 61.111 0.00 0.00 38.95 4.18
2440 2661 1.811679 GCTAGGTGCTTGGCTCGTC 60.812 63.158 0.00 0.00 38.95 4.20
2441 2662 1.153549 CTAGGTGCTTGGCTCGTCC 60.154 63.158 0.00 0.00 0.00 4.79
2442 2663 2.579684 CTAGGTGCTTGGCTCGTCCC 62.580 65.000 0.00 0.00 0.00 4.46
2443 2664 4.329545 GGTGCTTGGCTCGTCCCA 62.330 66.667 0.00 0.00 0.00 4.37
2444 2665 3.050275 GTGCTTGGCTCGTCCCAC 61.050 66.667 0.00 0.00 33.82 4.61
2447 2668 2.743718 CTTGGCTCGTCCCACAGT 59.256 61.111 0.00 0.00 33.82 3.55
2448 2669 1.071471 CTTGGCTCGTCCCACAGTT 59.929 57.895 0.00 0.00 33.82 3.16
2449 2670 0.535102 CTTGGCTCGTCCCACAGTTT 60.535 55.000 0.00 0.00 33.82 2.66
2450 2671 0.534203 TTGGCTCGTCCCACAGTTTC 60.534 55.000 0.00 0.00 33.82 2.78
2451 2672 1.371558 GGCTCGTCCCACAGTTTCT 59.628 57.895 0.00 0.00 0.00 2.52
2453 2674 1.001633 GGCTCGTCCCACAGTTTCTTA 59.998 52.381 0.00 0.00 0.00 2.10
2454 2675 2.549349 GGCTCGTCCCACAGTTTCTTAA 60.549 50.000 0.00 0.00 0.00 1.85
2455 2676 2.479275 GCTCGTCCCACAGTTTCTTAAC 59.521 50.000 0.00 0.00 34.36 2.01
2456 2677 3.064931 CTCGTCCCACAGTTTCTTAACC 58.935 50.000 0.00 0.00 34.71 2.85
2457 2678 2.435069 TCGTCCCACAGTTTCTTAACCA 59.565 45.455 0.00 0.00 34.71 3.67
2459 2680 3.188460 CGTCCCACAGTTTCTTAACCATG 59.812 47.826 0.00 0.00 34.71 3.66
2460 2681 4.142038 GTCCCACAGTTTCTTAACCATGT 58.858 43.478 0.00 0.00 34.71 3.21
2461 2682 4.023193 GTCCCACAGTTTCTTAACCATGTG 60.023 45.833 0.00 0.00 38.86 3.21
2463 2684 3.305335 CCACAGTTTCTTAACCATGTGGC 60.305 47.826 9.03 0.00 45.59 5.01
2464 2685 2.890945 ACAGTTTCTTAACCATGTGGCC 59.109 45.455 0.00 0.00 39.32 5.36
2465 2686 2.231235 CAGTTTCTTAACCATGTGGCCC 59.769 50.000 0.00 0.00 39.32 5.80
2466 2687 2.158385 AGTTTCTTAACCATGTGGCCCA 60.158 45.455 0.00 0.00 39.32 5.36
2467 2688 1.917872 TTCTTAACCATGTGGCCCAC 58.082 50.000 7.01 7.01 39.32 4.61
2468 2689 6.770998 AGTTTCTTAACCATGTGGCCCACA 62.771 45.833 20.78 20.78 40.71 4.17
2487 2708 4.837085 GCCATAGGCTCCATGCAT 57.163 55.556 0.00 0.00 46.69 3.96
2488 2709 2.264124 GCCATAGGCTCCATGCATG 58.736 57.895 20.19 20.19 46.69 4.06
2489 2710 0.538977 GCCATAGGCTCCATGCATGT 60.539 55.000 24.58 8.87 46.69 3.21
2491 2712 2.313317 CCATAGGCTCCATGCATGTTT 58.687 47.619 24.58 8.15 45.15 2.83
2494 2715 4.365723 CATAGGCTCCATGCATGTTTTTC 58.634 43.478 24.58 10.37 45.15 2.29
2495 2716 1.551883 AGGCTCCATGCATGTTTTTCC 59.448 47.619 24.58 16.63 45.15 3.13
2496 2717 1.275856 GGCTCCATGCATGTTTTTCCA 59.724 47.619 24.58 0.00 45.15 3.53
2497 2718 2.289569 GGCTCCATGCATGTTTTTCCAA 60.290 45.455 24.58 0.03 45.15 3.53
2498 2719 3.401182 GCTCCATGCATGTTTTTCCAAA 58.599 40.909 24.58 0.00 42.31 3.28
2500 2721 4.456566 GCTCCATGCATGTTTTTCCAAAAT 59.543 37.500 24.58 0.00 42.31 1.82
2501 2722 5.391203 GCTCCATGCATGTTTTTCCAAAATC 60.391 40.000 24.58 0.00 42.31 2.17
2502 2723 5.618236 TCCATGCATGTTTTTCCAAAATCA 58.382 33.333 24.58 0.00 33.59 2.57
2503 2724 6.060136 TCCATGCATGTTTTTCCAAAATCAA 58.940 32.000 24.58 0.00 33.02 2.57
2504 2725 6.017275 TCCATGCATGTTTTTCCAAAATCAAC 60.017 34.615 24.58 0.00 33.02 3.18
2507 2728 7.014092 TGCATGTTTTTCCAAAATCAACTTC 57.986 32.000 0.00 0.00 33.02 3.01
2508 2729 6.038050 TGCATGTTTTTCCAAAATCAACTTCC 59.962 34.615 0.00 0.00 33.02 3.46
2509 2730 6.513230 GCATGTTTTTCCAAAATCAACTTCCC 60.513 38.462 0.00 0.00 33.02 3.97
2511 2732 7.425224 TGTTTTTCCAAAATCAACTTCCCTA 57.575 32.000 0.00 0.00 0.00 3.53
2515 2736 8.491045 TTTTCCAAAATCAACTTCCCTAAGAT 57.509 30.769 0.00 0.00 36.50 2.40
2516 2737 7.466746 TTCCAAAATCAACTTCCCTAAGATG 57.533 36.000 0.00 0.00 36.97 2.90
2517 2738 5.951747 TCCAAAATCAACTTCCCTAAGATGG 59.048 40.000 0.00 0.00 36.45 3.51
2527 2748 2.938956 CCTAAGATGGGATTCGGCTT 57.061 50.000 0.00 0.00 0.00 4.35
2528 2749 2.498167 CCTAAGATGGGATTCGGCTTG 58.502 52.381 0.00 0.00 0.00 4.01
2529 2750 1.876156 CTAAGATGGGATTCGGCTTGC 59.124 52.381 0.00 0.00 0.00 4.01
2530 2751 0.753111 AAGATGGGATTCGGCTTGCC 60.753 55.000 0.75 0.75 0.00 4.52
2531 2752 1.152881 GATGGGATTCGGCTTGCCT 60.153 57.895 10.12 0.00 0.00 4.75
2532 2753 1.450531 GATGGGATTCGGCTTGCCTG 61.451 60.000 10.12 3.87 0.00 4.85
2533 2754 3.521796 GGGATTCGGCTTGCCTGC 61.522 66.667 10.12 0.00 0.00 4.85
2534 2755 2.439156 GGATTCGGCTTGCCTGCT 60.439 61.111 10.12 0.00 0.00 4.24
2535 2756 2.476320 GGATTCGGCTTGCCTGCTC 61.476 63.158 10.12 3.36 0.00 4.26
2536 2757 1.451028 GATTCGGCTTGCCTGCTCT 60.451 57.895 10.12 0.00 0.00 4.09
2537 2758 1.435408 GATTCGGCTTGCCTGCTCTC 61.435 60.000 10.12 0.00 0.00 3.20
2538 2759 1.908340 ATTCGGCTTGCCTGCTCTCT 61.908 55.000 10.12 0.00 0.00 3.10
2539 2760 2.511145 CGGCTTGCCTGCTCTCTC 60.511 66.667 10.12 0.00 0.00 3.20
2540 2761 2.124778 GGCTTGCCTGCTCTCTCC 60.125 66.667 4.11 0.00 0.00 3.71
2541 2762 2.124778 GCTTGCCTGCTCTCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
2542 2763 2.186384 CTTGCCTGCTCTCTCCCG 59.814 66.667 0.00 0.00 0.00 5.14
2543 2764 2.283894 TTGCCTGCTCTCTCCCGA 60.284 61.111 0.00 0.00 0.00 5.14
2545 2766 1.964608 TTGCCTGCTCTCTCCCGATG 61.965 60.000 0.00 0.00 0.00 3.84
2546 2767 2.420890 CCTGCTCTCTCCCGATGC 59.579 66.667 0.00 0.00 0.00 3.91
2549 2770 1.076412 TGCTCTCTCCCGATGCTCT 60.076 57.895 0.00 0.00 0.00 4.09
2550 2771 1.106351 TGCTCTCTCCCGATGCTCTC 61.106 60.000 0.00 0.00 0.00 3.20
2551 2772 1.106351 GCTCTCTCCCGATGCTCTCA 61.106 60.000 0.00 0.00 0.00 3.27
2552 2773 0.667993 CTCTCTCCCGATGCTCTCAC 59.332 60.000 0.00 0.00 0.00 3.51
2553 2774 0.257328 TCTCTCCCGATGCTCTCACT 59.743 55.000 0.00 0.00 0.00 3.41
2554 2775 1.110442 CTCTCCCGATGCTCTCACTT 58.890 55.000 0.00 0.00 0.00 3.16
2555 2776 1.066908 CTCTCCCGATGCTCTCACTTC 59.933 57.143 0.00 0.00 0.00 3.01
2556 2777 0.820226 CTCCCGATGCTCTCACTTCA 59.180 55.000 0.00 0.00 0.00 3.02
2557 2778 1.411977 CTCCCGATGCTCTCACTTCAT 59.588 52.381 0.00 0.00 0.00 2.57
2558 2779 1.410517 TCCCGATGCTCTCACTTCATC 59.589 52.381 0.00 0.00 34.74 2.92
2559 2780 1.539929 CCCGATGCTCTCACTTCATCC 60.540 57.143 0.00 0.00 34.63 3.51
2560 2781 1.411977 CCGATGCTCTCACTTCATCCT 59.588 52.381 0.00 0.00 34.63 3.24
2561 2782 2.625314 CCGATGCTCTCACTTCATCCTA 59.375 50.000 0.00 0.00 34.63 2.94
2562 2783 3.551863 CCGATGCTCTCACTTCATCCTAC 60.552 52.174 0.00 0.00 34.63 3.18
2563 2784 3.637432 GATGCTCTCACTTCATCCTACG 58.363 50.000 0.00 0.00 32.60 3.51
2564 2785 1.751351 TGCTCTCACTTCATCCTACGG 59.249 52.381 0.00 0.00 0.00 4.02
2565 2786 1.751924 GCTCTCACTTCATCCTACGGT 59.248 52.381 0.00 0.00 0.00 4.83
2566 2787 2.166664 GCTCTCACTTCATCCTACGGTT 59.833 50.000 0.00 0.00 0.00 4.44
2567 2788 3.775202 CTCTCACTTCATCCTACGGTTG 58.225 50.000 0.00 0.00 0.00 3.77
2568 2789 3.162666 TCTCACTTCATCCTACGGTTGT 58.837 45.455 0.00 0.00 0.00 3.32
2569 2790 3.192844 TCTCACTTCATCCTACGGTTGTC 59.807 47.826 0.00 0.00 0.00 3.18
2570 2791 3.162666 TCACTTCATCCTACGGTTGTCT 58.837 45.455 0.00 0.00 0.00 3.41
2571 2792 3.576982 TCACTTCATCCTACGGTTGTCTT 59.423 43.478 0.00 0.00 0.00 3.01
2572 2793 4.039973 TCACTTCATCCTACGGTTGTCTTT 59.960 41.667 0.00 0.00 0.00 2.52
2573 2794 4.755123 CACTTCATCCTACGGTTGTCTTTT 59.245 41.667 0.00 0.00 0.00 2.27
2574 2795 5.238650 CACTTCATCCTACGGTTGTCTTTTT 59.761 40.000 0.00 0.00 0.00 1.94
2609 2830 9.327731 TCTTTCTAATCTAATTATCTCCCTCCC 57.672 37.037 0.00 0.00 0.00 4.30
2610 2831 9.332713 CTTTCTAATCTAATTATCTCCCTCCCT 57.667 37.037 0.00 0.00 0.00 4.20
2611 2832 8.671987 TTCTAATCTAATTATCTCCCTCCCTG 57.328 38.462 0.00 0.00 0.00 4.45
2612 2833 8.012663 TCTAATCTAATTATCTCCCTCCCTGA 57.987 38.462 0.00 0.00 0.00 3.86
2613 2834 8.637371 TCTAATCTAATTATCTCCCTCCCTGAT 58.363 37.037 0.00 0.00 0.00 2.90
2614 2835 9.278011 CTAATCTAATTATCTCCCTCCCTGATT 57.722 37.037 0.00 0.00 0.00 2.57
2615 2836 8.531362 AATCTAATTATCTCCCTCCCTGATTT 57.469 34.615 0.00 0.00 0.00 2.17
2616 2837 7.954539 TCTAATTATCTCCCTCCCTGATTTT 57.045 36.000 0.00 0.00 0.00 1.82
2617 2838 9.635284 ATCTAATTATCTCCCTCCCTGATTTTA 57.365 33.333 0.00 0.00 0.00 1.52
2618 2839 9.460413 TCTAATTATCTCCCTCCCTGATTTTAA 57.540 33.333 0.00 0.00 0.00 1.52
2621 2842 4.862641 TCTCCCTCCCTGATTTTAAAGG 57.137 45.455 0.00 0.00 0.00 3.11
2628 2849 2.466846 CCTGATTTTAAAGGGGTGGGG 58.533 52.381 0.00 0.00 0.00 4.96
2629 2850 1.831106 CTGATTTTAAAGGGGTGGGGC 59.169 52.381 0.00 0.00 0.00 5.80
2630 2851 1.200519 GATTTTAAAGGGGTGGGGCC 58.799 55.000 0.00 0.00 0.00 5.80
2631 2852 0.616395 ATTTTAAAGGGGTGGGGCCG 60.616 55.000 0.00 0.00 38.44 6.13
2632 2853 2.733475 TTTTAAAGGGGTGGGGCCGG 62.733 60.000 0.00 0.00 38.44 6.13
2633 2854 4.679003 TAAAGGGGTGGGGCCGGA 62.679 66.667 5.05 0.00 38.44 5.14
2639 2860 3.094498 GGTGGGGCCGGACCTTAT 61.094 66.667 29.76 0.00 39.10 1.73
2640 2861 2.686572 GGTGGGGCCGGACCTTATT 61.687 63.158 29.76 0.00 39.10 1.40
2641 2862 1.305287 GTGGGGCCGGACCTTATTT 59.695 57.895 29.76 0.00 39.10 1.40
2642 2863 0.323999 GTGGGGCCGGACCTTATTTT 60.324 55.000 29.76 0.00 39.10 1.82
2643 2864 0.323908 TGGGGCCGGACCTTATTTTG 60.324 55.000 29.76 0.00 39.10 2.44
2644 2865 0.323999 GGGGCCGGACCTTATTTTGT 60.324 55.000 29.76 0.00 39.10 2.83
2645 2866 1.100510 GGGCCGGACCTTATTTTGTC 58.899 55.000 23.07 0.00 39.10 3.18
2646 2867 1.100510 GGCCGGACCTTATTTTGTCC 58.899 55.000 5.05 0.00 46.15 4.02
2658 2879 9.143631 GACCTTATTTTGTCCAATCAAATCAAG 57.856 33.333 0.00 0.00 37.20 3.02
2659 2880 8.650490 ACCTTATTTTGTCCAATCAAATCAAGT 58.350 29.630 0.00 0.00 37.20 3.16
2660 2881 9.143631 CCTTATTTTGTCCAATCAAATCAAGTC 57.856 33.333 0.00 0.00 37.20 3.01
2661 2882 9.695526 CTTATTTTGTCCAATCAAATCAAGTCA 57.304 29.630 0.00 0.00 37.20 3.41
2662 2883 7.951530 ATTTTGTCCAATCAAATCAAGTCAC 57.048 32.000 0.00 0.00 37.20 3.67
2663 2884 6.462552 TTTGTCCAATCAAATCAAGTCACA 57.537 33.333 0.00 0.00 33.23 3.58
2664 2885 6.653526 TTGTCCAATCAAATCAAGTCACAT 57.346 33.333 0.00 0.00 0.00 3.21
2665 2886 7.757941 TTGTCCAATCAAATCAAGTCACATA 57.242 32.000 0.00 0.00 0.00 2.29
2666 2887 7.943079 TGTCCAATCAAATCAAGTCACATAT 57.057 32.000 0.00 0.00 0.00 1.78
2667 2888 7.764331 TGTCCAATCAAATCAAGTCACATATG 58.236 34.615 0.00 0.00 0.00 1.78
2668 2889 6.694411 GTCCAATCAAATCAAGTCACATATGC 59.306 38.462 1.58 0.00 0.00 3.14
2669 2890 5.684184 CCAATCAAATCAAGTCACATATGCG 59.316 40.000 1.58 0.00 0.00 4.73
2670 2891 4.880886 TCAAATCAAGTCACATATGCGG 57.119 40.909 1.58 0.00 0.00 5.69
2671 2892 3.627123 TCAAATCAAGTCACATATGCGGG 59.373 43.478 1.58 0.00 0.00 6.13
2672 2893 3.558931 AATCAAGTCACATATGCGGGA 57.441 42.857 1.58 0.00 0.00 5.14
2673 2894 2.602257 TCAAGTCACATATGCGGGAG 57.398 50.000 1.58 0.00 0.00 4.30
2685 2906 3.536917 CGGGAGCACGGATAGGCA 61.537 66.667 0.00 0.00 0.00 4.75
2686 2907 2.109181 GGGAGCACGGATAGGCAC 59.891 66.667 0.00 0.00 0.00 5.01
2687 2908 2.731571 GGGAGCACGGATAGGCACA 61.732 63.158 0.00 0.00 0.00 4.57
2688 2909 1.521681 GGAGCACGGATAGGCACAC 60.522 63.158 0.00 0.00 0.00 3.82
2689 2910 1.878522 GAGCACGGATAGGCACACG 60.879 63.158 0.00 0.00 0.00 4.49
2690 2911 3.564027 GCACGGATAGGCACACGC 61.564 66.667 0.00 0.00 37.44 5.34
2707 2928 4.785453 CCGGGGAGCAGGCAAGTC 62.785 72.222 0.00 0.00 0.00 3.01
2708 2929 3.710722 CGGGGAGCAGGCAAGTCT 61.711 66.667 0.00 0.00 0.00 3.24
2709 2930 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
2710 2931 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
2711 2932 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
2712 2933 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
2713 2934 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
2714 2935 2.435059 GCAGGCAAGTCTCGTCCC 60.435 66.667 0.00 0.00 0.00 4.46
2715 2936 2.266055 CAGGCAAGTCTCGTCCCC 59.734 66.667 0.00 0.00 0.00 4.81
2716 2937 2.120718 AGGCAAGTCTCGTCCCCT 59.879 61.111 0.00 0.00 0.00 4.79
2717 2938 0.970937 CAGGCAAGTCTCGTCCCCTA 60.971 60.000 0.00 0.00 0.00 3.53
2718 2939 0.252103 AGGCAAGTCTCGTCCCCTAA 60.252 55.000 0.00 0.00 0.00 2.69
2719 2940 0.175989 GGCAAGTCTCGTCCCCTAAG 59.824 60.000 0.00 0.00 0.00 2.18
2720 2941 1.183549 GCAAGTCTCGTCCCCTAAGA 58.816 55.000 0.00 0.00 0.00 2.10
2721 2942 1.757699 GCAAGTCTCGTCCCCTAAGAT 59.242 52.381 0.00 0.00 0.00 2.40
2722 2943 2.482142 GCAAGTCTCGTCCCCTAAGATG 60.482 54.545 0.00 0.00 0.00 2.90
2723 2944 2.761208 CAAGTCTCGTCCCCTAAGATGT 59.239 50.000 0.00 0.00 0.00 3.06
2733 2954 1.952296 CCCTAAGATGTGCCATGCTTC 59.048 52.381 0.00 0.00 0.00 3.86
2734 2955 2.422519 CCCTAAGATGTGCCATGCTTCT 60.423 50.000 0.00 0.00 0.00 2.85
2740 2961 2.391616 TGTGCCATGCTTCTCTACAG 57.608 50.000 0.00 0.00 0.00 2.74
2743 2964 1.280133 TGCCATGCTTCTCTACAGCTT 59.720 47.619 0.00 0.00 38.19 3.74
2746 2967 4.133078 GCCATGCTTCTCTACAGCTTAAT 58.867 43.478 0.00 0.00 38.19 1.40
2782 3018 6.183360 CCAAATAGGTTCTTAGGCTGACAATG 60.183 42.308 0.00 0.00 0.00 2.82
2809 3045 2.034879 GTGCGACATGGTCAGGGTG 61.035 63.158 0.00 0.00 32.09 4.61
2811 3047 2.815211 CGACATGGTCAGGGTGCG 60.815 66.667 0.00 0.00 32.09 5.34
2813 3049 1.741770 GACATGGTCAGGGTGCGTC 60.742 63.158 0.00 0.00 32.09 5.19
2831 3067 2.737679 CGTCCCGTCAAAATCTACTCCC 60.738 54.545 0.00 0.00 0.00 4.30
2848 3084 2.874701 CTCCCGAAATTAGGCATGACTG 59.125 50.000 12.69 0.00 0.00 3.51
2860 3096 0.391661 CATGACTGCTGCCTACGGTT 60.392 55.000 0.00 0.00 0.00 4.44
2880 3116 3.855255 TTCATCAATGATTAGGGGCGA 57.145 42.857 0.00 0.00 36.56 5.54
3321 3563 5.606348 AGATCTTTCTTACCCTACTGCTG 57.394 43.478 0.00 0.00 0.00 4.41
3328 3570 1.348064 TACCCTACTGCTGCAGTGTT 58.652 50.000 37.89 23.19 45.01 3.32
3334 3582 3.815401 CCTACTGCTGCAGTGTTTAAACT 59.185 43.478 37.89 15.73 45.01 2.66
3335 3583 4.994852 CCTACTGCTGCAGTGTTTAAACTA 59.005 41.667 37.89 18.38 45.01 2.24
3336 3584 4.813296 ACTGCTGCAGTGTTTAAACTAC 57.187 40.909 32.54 14.29 43.63 2.73
3337 3585 4.451900 ACTGCTGCAGTGTTTAAACTACT 58.548 39.130 32.54 16.03 43.63 2.57
3338 3586 4.273480 ACTGCTGCAGTGTTTAAACTACTG 59.727 41.667 32.54 28.13 43.63 2.74
3339 3587 4.196193 TGCTGCAGTGTTTAAACTACTGT 58.804 39.130 30.08 11.60 38.80 3.55
3340 3588 4.638421 TGCTGCAGTGTTTAAACTACTGTT 59.362 37.500 30.08 11.13 38.80 3.16
3341 3589 5.205565 GCTGCAGTGTTTAAACTACTGTTC 58.794 41.667 30.08 22.27 38.80 3.18
3342 3590 5.220777 GCTGCAGTGTTTAAACTACTGTTCA 60.221 40.000 30.08 24.10 38.80 3.18
3343 3591 6.358118 TGCAGTGTTTAAACTACTGTTCAG 57.642 37.500 30.08 17.64 38.80 3.02
3371 3619 3.023119 ACATTGGCAAGTTGACAGTTCA 58.977 40.909 12.09 0.00 36.33 3.18
3381 3629 2.418368 TGACAGTTCAACCTGCTTGT 57.582 45.000 0.00 0.00 35.83 3.16
3382 3630 2.016318 TGACAGTTCAACCTGCTTGTG 58.984 47.619 0.00 0.00 35.83 3.33
3385 3633 1.066002 CAGTTCAACCTGCTTGTGGTG 59.934 52.381 0.00 0.00 37.93 4.17
3428 3677 1.352083 TGGCATAGTAGATGGCCCTC 58.648 55.000 0.00 0.00 45.83 4.30
3493 3742 4.003648 CAGCAAAGGTAGTACCAAAGAGG 58.996 47.826 21.49 5.73 41.95 3.69
3583 3835 6.867662 TCACTTTCCTGTTCTTCTTCATTC 57.132 37.500 0.00 0.00 0.00 2.67
3625 3877 2.366590 GGATTCAAAATGATCCTGCCCC 59.633 50.000 0.00 0.00 0.00 5.80
3724 3976 7.826690 TGTAGCTTTTGAGTTTTGAGACTTTT 58.173 30.769 0.00 0.00 0.00 2.27
3802 4057 1.030488 ACAGAGCACATGCATGGAGC 61.030 55.000 29.41 28.92 45.16 4.70
3935 4190 5.214293 TCATCATCATCTTCCTCTCCTTCA 58.786 41.667 0.00 0.00 0.00 3.02
4031 4286 7.349412 TGTTCATGGCATATTCATGATGAAA 57.651 32.000 12.36 2.54 46.81 2.69
4095 4352 1.379044 CTAAGGGTTGCAGCAGGGG 60.379 63.158 2.05 0.00 0.00 4.79
4254 4527 0.391263 GTGCCGAAGTAGGGAACTGG 60.391 60.000 0.00 0.00 43.88 4.00
4303 4576 7.307219 GCCACTAAGGAAAATATTACTACGCAG 60.307 40.741 0.00 0.00 41.22 5.18
4392 4665 3.748083 ACTGCTGTTCATGTCATTGTCT 58.252 40.909 0.00 0.00 0.00 3.41
4442 4716 3.877508 AGTGCTGTTAATTTATCGGAGGC 59.122 43.478 0.00 0.00 0.00 4.70
4451 4725 9.126151 TGTTAATTTATCGGAGGCAATCAATTA 57.874 29.630 0.00 0.00 0.00 1.40
4452 4726 9.612620 GTTAATTTATCGGAGGCAATCAATTAG 57.387 33.333 0.00 0.00 0.00 1.73
4453 4727 7.823745 AATTTATCGGAGGCAATCAATTAGT 57.176 32.000 0.00 0.00 0.00 2.24
4454 4728 8.918202 AATTTATCGGAGGCAATCAATTAGTA 57.082 30.769 0.00 0.00 0.00 1.82
4455 4729 7.962964 TTTATCGGAGGCAATCAATTAGTAG 57.037 36.000 0.00 0.00 0.00 2.57
4596 4870 4.454678 GGTTGTCATCATGAGGCATTCTA 58.545 43.478 1.57 0.00 0.00 2.10
4693 4967 3.365969 CGCCAATCAAGTCAAAAGGTACC 60.366 47.826 2.73 2.73 0.00 3.34
4722 4996 8.369218 ACCAATTGTGAATTCAAAAGAATGAC 57.631 30.769 16.02 0.00 0.00 3.06
4737 5011 9.205916 CAAAAGAATGACGTACGTTAATTATGG 57.794 33.333 23.70 11.70 0.00 2.74
4806 5080 4.018050 AGTGGCCTTTCTGTCAATAATCCT 60.018 41.667 3.32 0.00 0.00 3.24
4992 5274 6.595716 AGGTTCAGCTTAAGCAGTAATACAAG 59.404 38.462 28.39 5.85 45.16 3.16
5067 5349 1.534729 AAGGTTGAATTCCGAGTGCC 58.465 50.000 2.27 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.314740 ACTATCATCGACAAGCTCCTTC 57.685 45.455 0.00 0.00 0.00 3.46
60 61 2.303022 TGAGGGAGGTGAACTTAGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
222 223 9.197306 GTTTGGTAATACCTTCCCTTAATGAAT 57.803 33.333 11.16 0.00 39.58 2.57
242 243 6.773976 TTGAAGAGAATCAACAAGTTTGGT 57.226 33.333 0.00 0.00 37.82 3.67
246 247 7.650903 GCAAGATTTGAAGAGAATCAACAAGTT 59.349 33.333 0.00 0.00 38.95 2.66
256 257 4.889409 ACCAACTGCAAGATTTGAAGAGAA 59.111 37.500 3.85 0.00 38.71 2.87
353 355 2.859273 AAGAGGTCGAAGGCATGGCG 62.859 60.000 14.30 0.00 0.00 5.69
358 360 1.691976 TGAAAGAAGAGGTCGAAGGCA 59.308 47.619 0.00 0.00 0.00 4.75
423 425 3.317711 ACAAACTTGCAATCATTCACCGA 59.682 39.130 0.00 0.00 0.00 4.69
466 468 8.934697 AGGTTAACTGCTGATGGAATATTAGTA 58.065 33.333 5.42 0.00 0.00 1.82
470 472 5.760253 CGAGGTTAACTGCTGATGGAATATT 59.240 40.000 5.42 0.00 0.00 1.28
525 552 9.757227 CATACTAATTGTGTTTTCCTTCCAAAA 57.243 29.630 0.00 0.00 0.00 2.44
526 553 9.137459 TCATACTAATTGTGTTTTCCTTCCAAA 57.863 29.630 0.00 0.00 0.00 3.28
527 554 8.573035 GTCATACTAATTGTGTTTTCCTTCCAA 58.427 33.333 0.00 0.00 0.00 3.53
528 555 7.942341 AGTCATACTAATTGTGTTTTCCTTCCA 59.058 33.333 0.00 0.00 0.00 3.53
529 556 8.336801 AGTCATACTAATTGTGTTTTCCTTCC 57.663 34.615 0.00 0.00 0.00 3.46
579 685 9.313118 AGAAAAACAACAAGATACAAAATGACC 57.687 29.630 0.00 0.00 0.00 4.02
750 880 3.861341 ACAGATGATGTTCCCACGG 57.139 52.632 0.00 0.00 39.96 4.94
774 904 6.480524 TTCAAGTTTTCATCCTATCACGTG 57.519 37.500 9.94 9.94 0.00 4.49
793 923 3.608241 CGCCAACGCATCTTACTTTTCAA 60.608 43.478 0.00 0.00 34.03 2.69
813 943 4.207841 GGTTAATAATACTGGTGACGTCGC 59.792 45.833 20.76 20.76 0.00 5.19
814 944 4.741676 GGGTTAATAATACTGGTGACGTCG 59.258 45.833 11.62 0.00 0.00 5.12
815 945 4.741676 CGGGTTAATAATACTGGTGACGTC 59.258 45.833 9.11 9.11 0.00 4.34
848 978 6.095580 GCTTGAAAGGGTTTATAAGGAGGAAG 59.904 42.308 0.00 0.00 0.00 3.46
849 979 5.949952 GCTTGAAAGGGTTTATAAGGAGGAA 59.050 40.000 0.00 0.00 0.00 3.36
850 980 5.506708 GCTTGAAAGGGTTTATAAGGAGGA 58.493 41.667 0.00 0.00 0.00 3.71
851 981 4.645136 GGCTTGAAAGGGTTTATAAGGAGG 59.355 45.833 0.00 0.00 0.00 4.30
875 1005 1.244816 TCGGAGTGTGTAGTGGAGTG 58.755 55.000 0.00 0.00 0.00 3.51
884 1014 1.329256 AGCTAGTGTTCGGAGTGTGT 58.671 50.000 0.00 0.00 0.00 3.72
892 1022 0.818296 AGGGCAGTAGCTAGTGTTCG 59.182 55.000 25.71 5.03 41.70 3.95
930 1060 2.026449 ACTTGGGAAGCTGAGGAAGATG 60.026 50.000 0.00 0.00 0.00 2.90
992 1122 1.815003 GAACCTTCCACATGCTTGGAG 59.185 52.381 5.30 0.00 46.61 3.86
1009 1139 2.427410 CGCCGTTGCTGCAAGAAC 60.427 61.111 16.53 3.93 34.07 3.01
1315 1445 2.125350 CGAGTTGCAGAGGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
1734 1870 2.264480 CCGATGACGTTGCCTCCA 59.736 61.111 0.00 0.00 37.88 3.86
1800 1936 2.517875 GCGATGCCATTGCCTCCT 60.518 61.111 5.55 0.00 36.33 3.69
1968 2152 2.807676 AGCCCAGAAATTAAGGTGGTG 58.192 47.619 0.00 0.00 0.00 4.17
2054 2238 2.254464 GGGCTCCCGAAATCGATGC 61.254 63.158 0.00 5.41 43.02 3.91
2077 2261 1.073284 ACAAGTAACCGGATTGGCAGT 59.927 47.619 9.46 0.00 43.94 4.40
2103 2287 7.561722 TCCAACCAATATATTCGGATTTGGAAA 59.438 33.333 21.26 10.94 39.33 3.13
2104 2288 7.063593 TCCAACCAATATATTCGGATTTGGAA 58.936 34.615 21.26 13.22 39.33 3.53
2105 2289 6.606069 TCCAACCAATATATTCGGATTTGGA 58.394 36.000 20.53 20.53 39.33 3.53
2106 2290 6.892658 TCCAACCAATATATTCGGATTTGG 57.107 37.500 18.35 18.35 42.02 3.28
2107 2291 8.340618 AGATCCAACCAATATATTCGGATTTG 57.659 34.615 16.26 12.04 32.01 2.32
2123 2307 0.521735 GACCGTTGCAAGATCCAACC 59.478 55.000 0.00 0.00 39.42 3.77
2138 2322 0.176680 AAGCTACTCTGCATGGACCG 59.823 55.000 0.00 0.00 34.99 4.79
2180 2365 1.160137 CCCGTCTCAAAAGAAGGCAG 58.840 55.000 2.32 0.00 46.44 4.85
2211 2396 8.625651 TCGGTGATCTTAAAATTCTTGACAAAA 58.374 29.630 0.00 0.00 0.00 2.44
2217 2402 7.857885 GCCTAATCGGTGATCTTAAAATTCTTG 59.142 37.037 0.00 0.00 34.25 3.02
2228 2415 1.794714 AGTGGCCTAATCGGTGATCT 58.205 50.000 3.32 0.00 34.25 2.75
2298 2486 2.099756 TCATGATGCAGACCTAGACACG 59.900 50.000 0.00 0.00 0.00 4.49
2304 2492 3.495629 GCTTCCATCATGATGCAGACCTA 60.496 47.826 27.24 7.26 37.49 3.08
2306 2494 1.607628 GCTTCCATCATGATGCAGACC 59.392 52.381 27.24 11.72 37.49 3.85
2314 2502 6.938596 CCTAAATCTATGTGCTTCCATCATGA 59.061 38.462 0.00 0.00 0.00 3.07
2324 2512 6.889198 TGTAGAAAGCCTAAATCTATGTGCT 58.111 36.000 0.00 0.00 0.00 4.40
2332 2521 7.793927 ATAGCAACTGTAGAAAGCCTAAATC 57.206 36.000 0.00 0.00 0.00 2.17
2334 2523 7.996098 AAATAGCAACTGTAGAAAGCCTAAA 57.004 32.000 0.00 0.00 0.00 1.85
2335 2524 8.098286 TGTAAATAGCAACTGTAGAAAGCCTAA 58.902 33.333 0.00 0.00 0.00 2.69
2337 2526 6.472887 TGTAAATAGCAACTGTAGAAAGCCT 58.527 36.000 0.00 0.00 0.00 4.58
2338 2527 6.737254 TGTAAATAGCAACTGTAGAAAGCC 57.263 37.500 0.00 0.00 0.00 4.35
2339 2528 8.902735 GTTTTGTAAATAGCAACTGTAGAAAGC 58.097 33.333 0.00 0.00 0.00 3.51
2340 2529 9.944663 TGTTTTGTAAATAGCAACTGTAGAAAG 57.055 29.630 0.00 0.00 0.00 2.62
2343 2563 8.439993 TGTGTTTTGTAAATAGCAACTGTAGA 57.560 30.769 0.00 0.00 0.00 2.59
2361 2581 1.941975 GCAGCCTGCATTTTGTGTTTT 59.058 42.857 12.82 0.00 44.26 2.43
2362 2582 1.585297 GCAGCCTGCATTTTGTGTTT 58.415 45.000 12.82 0.00 44.26 2.83
2363 2583 3.294079 GCAGCCTGCATTTTGTGTT 57.706 47.368 12.82 0.00 44.26 3.32
2364 2584 2.646797 AAGGCAGCCTGCATTTTGTGT 61.647 47.619 17.05 0.00 45.82 3.72
2365 2585 0.034337 AAGGCAGCCTGCATTTTGTG 59.966 50.000 17.05 0.00 45.82 3.33
2366 2586 2.444281 AAGGCAGCCTGCATTTTGT 58.556 47.368 17.05 0.00 45.82 2.83
2378 2598 7.326063 CGTAAATTAAACCTGAAGAAAAGGCAG 59.674 37.037 0.00 0.00 38.48 4.85
2404 2625 3.045601 AGCACAAGTGGTCATAGACAC 57.954 47.619 0.00 0.00 36.44 3.67
2408 2629 3.525537 CACCTAGCACAAGTGGTCATAG 58.474 50.000 8.32 1.24 41.96 2.23
2409 2630 2.354704 GCACCTAGCACAAGTGGTCATA 60.355 50.000 8.32 0.00 44.79 2.15
2412 2633 2.544726 GCACCTAGCACAAGTGGTC 58.455 57.895 8.32 0.00 44.79 4.02
2413 2634 4.800554 GCACCTAGCACAAGTGGT 57.199 55.556 9.99 9.99 44.79 4.16
2422 2643 1.811679 GACGAGCCAAGCACCTAGC 60.812 63.158 0.00 0.00 46.19 3.42
2423 2644 1.153549 GGACGAGCCAAGCACCTAG 60.154 63.158 0.00 0.00 36.34 3.02
2424 2645 2.656069 GGGACGAGCCAAGCACCTA 61.656 63.158 0.00 0.00 38.95 3.08
2425 2646 4.021925 GGGACGAGCCAAGCACCT 62.022 66.667 0.00 0.00 38.95 4.00
2426 2647 4.329545 TGGGACGAGCCAAGCACC 62.330 66.667 0.00 0.00 38.95 5.01
2427 2648 3.050275 GTGGGACGAGCCAAGCAC 61.050 66.667 0.00 0.00 38.95 4.40
2428 2649 3.535629 CTGTGGGACGAGCCAAGCA 62.536 63.158 0.00 0.00 38.95 3.91
2431 2652 0.534203 GAAACTGTGGGACGAGCCAA 60.534 55.000 0.00 0.00 38.95 4.52
2432 2653 1.070786 GAAACTGTGGGACGAGCCA 59.929 57.895 0.00 0.00 38.95 4.75
2433 2654 0.250338 AAGAAACTGTGGGACGAGCC 60.250 55.000 0.00 0.00 0.00 4.70
2434 2655 2.450609 TAAGAAACTGTGGGACGAGC 57.549 50.000 0.00 0.00 0.00 5.03
2435 2656 3.064931 GGTTAAGAAACTGTGGGACGAG 58.935 50.000 0.00 0.00 35.81 4.18
2436 2657 2.435069 TGGTTAAGAAACTGTGGGACGA 59.565 45.455 0.00 0.00 35.81 4.20
2438 2659 4.023193 CACATGGTTAAGAAACTGTGGGAC 60.023 45.833 0.00 0.00 37.78 4.46
2439 2660 4.141287 CACATGGTTAAGAAACTGTGGGA 58.859 43.478 0.00 0.00 37.78 4.37
2440 2661 4.503741 CACATGGTTAAGAAACTGTGGG 57.496 45.455 0.00 0.00 37.78 4.61
2441 2662 4.503741 CCACATGGTTAAGAAACTGTGG 57.496 45.455 12.47 12.47 46.70 4.17
2442 2663 3.305335 GGCCACATGGTTAAGAAACTGTG 60.305 47.826 0.00 0.00 39.61 3.66
2443 2664 2.890945 GGCCACATGGTTAAGAAACTGT 59.109 45.455 0.00 0.00 35.81 3.55
2444 2665 2.231235 GGGCCACATGGTTAAGAAACTG 59.769 50.000 4.39 0.00 35.81 3.16
2447 2668 2.243810 GTGGGCCACATGGTTAAGAAA 58.756 47.619 31.26 0.00 37.57 2.52
2448 2669 1.145945 TGTGGGCCACATGGTTAAGAA 59.854 47.619 34.67 8.68 39.62 2.52
2449 2670 0.774276 TGTGGGCCACATGGTTAAGA 59.226 50.000 34.67 9.50 39.62 2.10
2450 2671 3.355077 TGTGGGCCACATGGTTAAG 57.645 52.632 34.67 0.00 39.62 1.85
2472 2693 4.365723 GAAAAACATGCATGGAGCCTATG 58.634 43.478 29.41 4.03 44.83 2.23
2473 2694 3.385755 GGAAAAACATGCATGGAGCCTAT 59.614 43.478 29.41 9.60 44.83 2.57
2474 2695 2.760092 GGAAAAACATGCATGGAGCCTA 59.240 45.455 29.41 0.00 44.83 3.93
2476 2697 1.275856 TGGAAAAACATGCATGGAGCC 59.724 47.619 29.41 21.20 44.83 4.70
2477 2698 2.747396 TGGAAAAACATGCATGGAGC 57.253 45.000 29.41 13.79 45.96 4.70
2478 2699 5.701750 TGATTTTGGAAAAACATGCATGGAG 59.298 36.000 29.41 6.29 0.00 3.86
2479 2700 5.618236 TGATTTTGGAAAAACATGCATGGA 58.382 33.333 29.41 0.00 0.00 3.41
2480 2701 5.943706 TGATTTTGGAAAAACATGCATGG 57.056 34.783 29.41 12.50 0.00 3.66
2481 2702 6.961576 AGTTGATTTTGGAAAAACATGCATG 58.038 32.000 25.09 25.09 32.01 4.06
2483 2704 6.038050 GGAAGTTGATTTTGGAAAAACATGCA 59.962 34.615 0.00 0.00 32.01 3.96
2484 2705 6.429624 GGAAGTTGATTTTGGAAAAACATGC 58.570 36.000 0.00 0.00 32.01 4.06
2485 2706 6.767423 AGGGAAGTTGATTTTGGAAAAACATG 59.233 34.615 0.00 0.00 32.01 3.21
2486 2707 6.899089 AGGGAAGTTGATTTTGGAAAAACAT 58.101 32.000 0.00 0.00 32.01 2.71
2487 2708 6.306643 AGGGAAGTTGATTTTGGAAAAACA 57.693 33.333 0.00 0.00 0.00 2.83
2488 2709 8.201464 TCTTAGGGAAGTTGATTTTGGAAAAAC 58.799 33.333 0.00 0.00 34.03 2.43
2489 2710 8.312669 TCTTAGGGAAGTTGATTTTGGAAAAA 57.687 30.769 0.00 0.00 34.03 1.94
2491 2712 7.039082 CCATCTTAGGGAAGTTGATTTTGGAAA 60.039 37.037 0.00 0.00 35.28 3.13
2494 2715 6.212888 CCATCTTAGGGAAGTTGATTTTGG 57.787 41.667 0.00 0.00 35.28 3.28
2508 2729 2.498167 CAAGCCGAATCCCATCTTAGG 58.502 52.381 0.00 0.00 0.00 2.69
2509 2730 1.876156 GCAAGCCGAATCCCATCTTAG 59.124 52.381 0.00 0.00 0.00 2.18
2511 2732 0.753111 GGCAAGCCGAATCCCATCTT 60.753 55.000 0.00 0.00 0.00 2.40
2515 2736 2.045045 CAGGCAAGCCGAATCCCA 60.045 61.111 5.28 0.00 41.95 4.37
2516 2737 3.521796 GCAGGCAAGCCGAATCCC 61.522 66.667 5.28 0.00 41.95 3.85
2517 2738 2.439156 AGCAGGCAAGCCGAATCC 60.439 61.111 5.28 0.00 41.95 3.01
2518 2739 1.435408 GAGAGCAGGCAAGCCGAATC 61.435 60.000 5.28 5.04 41.95 2.52
2519 2740 1.451028 GAGAGCAGGCAAGCCGAAT 60.451 57.895 5.28 0.00 41.95 3.34
2520 2741 2.046892 GAGAGCAGGCAAGCCGAA 60.047 61.111 5.28 0.00 41.95 4.30
2521 2742 2.999648 AGAGAGCAGGCAAGCCGA 61.000 61.111 5.28 0.00 41.95 5.54
2522 2743 2.511145 GAGAGAGCAGGCAAGCCG 60.511 66.667 5.28 2.12 41.95 5.52
2523 2744 2.124778 GGAGAGAGCAGGCAAGCC 60.125 66.667 2.02 2.02 34.23 4.35
2524 2745 2.124778 GGGAGAGAGCAGGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
2525 2746 1.684386 ATCGGGAGAGAGCAGGCAAG 61.684 60.000 0.00 0.00 45.48 4.01
2526 2747 1.687146 ATCGGGAGAGAGCAGGCAA 60.687 57.895 0.00 0.00 45.48 4.52
2527 2748 2.042537 ATCGGGAGAGAGCAGGCA 60.043 61.111 0.00 0.00 45.48 4.75
2528 2749 2.420890 CATCGGGAGAGAGCAGGC 59.579 66.667 0.00 0.00 45.48 4.85
2529 2750 2.086251 GAGCATCGGGAGAGAGCAGG 62.086 65.000 0.00 0.00 45.48 4.85
2530 2751 1.108727 AGAGCATCGGGAGAGAGCAG 61.109 60.000 0.00 0.00 45.48 4.24
2531 2752 1.076412 AGAGCATCGGGAGAGAGCA 60.076 57.895 0.00 0.00 45.48 4.26
2532 2753 1.106351 TGAGAGCATCGGGAGAGAGC 61.106 60.000 0.00 0.00 45.48 4.09
2533 2754 0.667993 GTGAGAGCATCGGGAGAGAG 59.332 60.000 0.00 0.00 45.48 3.20
2534 2755 0.257328 AGTGAGAGCATCGGGAGAGA 59.743 55.000 0.00 0.00 45.48 3.10
2535 2756 1.066908 GAAGTGAGAGCATCGGGAGAG 59.933 57.143 0.00 0.00 45.48 3.20
2536 2757 1.107114 GAAGTGAGAGCATCGGGAGA 58.893 55.000 0.00 0.00 42.67 3.71
2537 2758 0.820226 TGAAGTGAGAGCATCGGGAG 59.180 55.000 0.00 0.00 42.67 4.30
2538 2759 1.410517 GATGAAGTGAGAGCATCGGGA 59.589 52.381 0.00 0.00 42.67 5.14
2539 2760 1.539929 GGATGAAGTGAGAGCATCGGG 60.540 57.143 0.00 0.00 42.67 5.14
2540 2761 1.411977 AGGATGAAGTGAGAGCATCGG 59.588 52.381 0.00 0.00 42.67 4.18
2541 2762 2.886862 AGGATGAAGTGAGAGCATCG 57.113 50.000 0.00 0.00 42.67 3.84
2542 2763 3.637432 CGTAGGATGAAGTGAGAGCATC 58.363 50.000 0.00 0.00 38.10 3.91
2543 2764 3.724508 CGTAGGATGAAGTGAGAGCAT 57.275 47.619 0.00 0.00 0.00 3.79
2583 2804 9.327731 GGGAGGGAGATAATTAGATTAGAAAGA 57.672 37.037 0.00 0.00 0.00 2.52
2584 2805 9.332713 AGGGAGGGAGATAATTAGATTAGAAAG 57.667 37.037 0.00 0.00 0.00 2.62
2585 2806 9.105844 CAGGGAGGGAGATAATTAGATTAGAAA 57.894 37.037 0.00 0.00 0.00 2.52
2586 2807 8.465146 TCAGGGAGGGAGATAATTAGATTAGAA 58.535 37.037 0.00 0.00 0.00 2.10
2587 2808 8.012663 TCAGGGAGGGAGATAATTAGATTAGA 57.987 38.462 0.00 0.00 0.00 2.10
2588 2809 8.852671 ATCAGGGAGGGAGATAATTAGATTAG 57.147 38.462 0.00 0.00 0.00 1.73
2589 2810 9.635284 AAATCAGGGAGGGAGATAATTAGATTA 57.365 33.333 0.00 0.00 0.00 1.75
2590 2811 8.531362 AAATCAGGGAGGGAGATAATTAGATT 57.469 34.615 0.00 0.00 0.00 2.40
2591 2812 8.531362 AAAATCAGGGAGGGAGATAATTAGAT 57.469 34.615 0.00 0.00 0.00 1.98
2592 2813 7.954539 AAAATCAGGGAGGGAGATAATTAGA 57.045 36.000 0.00 0.00 0.00 2.10
2595 2816 8.007153 CCTTTAAAATCAGGGAGGGAGATAATT 58.993 37.037 0.00 0.00 0.00 1.40
2596 2817 7.530435 CCTTTAAAATCAGGGAGGGAGATAAT 58.470 38.462 0.00 0.00 0.00 1.28
2597 2818 6.911308 CCTTTAAAATCAGGGAGGGAGATAA 58.089 40.000 0.00 0.00 0.00 1.75
2598 2819 6.515512 CCTTTAAAATCAGGGAGGGAGATA 57.484 41.667 0.00 0.00 0.00 1.98
2599 2820 5.394562 CCTTTAAAATCAGGGAGGGAGAT 57.605 43.478 0.00 0.00 0.00 2.75
2600 2821 4.862641 CCTTTAAAATCAGGGAGGGAGA 57.137 45.455 0.00 0.00 0.00 3.71
2608 2829 2.466846 CCCCACCCCTTTAAAATCAGG 58.533 52.381 0.00 0.00 0.00 3.86
2609 2830 1.831106 GCCCCACCCCTTTAAAATCAG 59.169 52.381 0.00 0.00 0.00 2.90
2610 2831 1.553651 GGCCCCACCCCTTTAAAATCA 60.554 52.381 0.00 0.00 0.00 2.57
2611 2832 1.200519 GGCCCCACCCCTTTAAAATC 58.799 55.000 0.00 0.00 0.00 2.17
2612 2833 0.616395 CGGCCCCACCCCTTTAAAAT 60.616 55.000 0.00 0.00 33.26 1.82
2613 2834 1.228925 CGGCCCCACCCCTTTAAAA 60.229 57.895 0.00 0.00 33.26 1.52
2614 2835 2.441505 CGGCCCCACCCCTTTAAA 59.558 61.111 0.00 0.00 33.26 1.52
2615 2836 3.663806 CCGGCCCCACCCCTTTAA 61.664 66.667 0.00 0.00 33.26 1.52
2616 2837 4.679003 TCCGGCCCCACCCCTTTA 62.679 66.667 0.00 0.00 33.26 1.85
2622 2843 2.219449 AAATAAGGTCCGGCCCCACC 62.219 60.000 9.45 9.45 38.26 4.61
2623 2844 0.323999 AAAATAAGGTCCGGCCCCAC 60.324 55.000 0.00 0.00 38.26 4.61
2624 2845 0.323908 CAAAATAAGGTCCGGCCCCA 60.324 55.000 0.00 0.00 38.26 4.96
2625 2846 0.323999 ACAAAATAAGGTCCGGCCCC 60.324 55.000 0.00 0.00 38.26 5.80
2626 2847 1.100510 GACAAAATAAGGTCCGGCCC 58.899 55.000 10.82 1.57 38.26 5.80
2627 2848 1.100510 GGACAAAATAAGGTCCGGCC 58.899 55.000 0.00 0.59 43.67 6.13
2632 2853 9.143631 CTTGATTTGATTGGACAAAATAAGGTC 57.856 33.333 0.00 0.00 41.88 3.85
2633 2854 8.650490 ACTTGATTTGATTGGACAAAATAAGGT 58.350 29.630 4.73 1.09 41.88 3.50
2634 2855 9.143631 GACTTGATTTGATTGGACAAAATAAGG 57.856 33.333 4.73 0.63 41.88 2.69
2635 2856 9.695526 TGACTTGATTTGATTGGACAAAATAAG 57.304 29.630 1.21 1.21 41.88 1.73
2636 2857 9.474920 GTGACTTGATTTGATTGGACAAAATAA 57.525 29.630 0.00 0.00 41.88 1.40
2637 2858 8.637099 TGTGACTTGATTTGATTGGACAAAATA 58.363 29.630 0.00 0.00 41.88 1.40
2638 2859 7.499292 TGTGACTTGATTTGATTGGACAAAAT 58.501 30.769 0.00 0.00 41.88 1.82
2639 2860 6.871844 TGTGACTTGATTTGATTGGACAAAA 58.128 32.000 0.00 0.00 41.88 2.44
2640 2861 6.462552 TGTGACTTGATTTGATTGGACAAA 57.537 33.333 0.00 0.00 42.58 2.83
2641 2862 6.653526 ATGTGACTTGATTTGATTGGACAA 57.346 33.333 0.00 0.00 0.00 3.18
2642 2863 7.629008 GCATATGTGACTTGATTTGATTGGACA 60.629 37.037 4.29 0.00 0.00 4.02
2643 2864 6.694411 GCATATGTGACTTGATTTGATTGGAC 59.306 38.462 4.29 0.00 0.00 4.02
2644 2865 6.458615 CGCATATGTGACTTGATTTGATTGGA 60.459 38.462 10.90 0.00 0.00 3.53
2645 2866 5.684184 CGCATATGTGACTTGATTTGATTGG 59.316 40.000 10.90 0.00 0.00 3.16
2646 2867 5.684184 CCGCATATGTGACTTGATTTGATTG 59.316 40.000 17.89 0.00 0.00 2.67
2647 2868 5.221106 CCCGCATATGTGACTTGATTTGATT 60.221 40.000 17.89 0.00 0.00 2.57
2648 2869 4.276678 CCCGCATATGTGACTTGATTTGAT 59.723 41.667 17.89 0.00 0.00 2.57
2649 2870 3.627123 CCCGCATATGTGACTTGATTTGA 59.373 43.478 17.89 0.00 0.00 2.69
2650 2871 3.627123 TCCCGCATATGTGACTTGATTTG 59.373 43.478 17.89 0.00 0.00 2.32
2651 2872 3.879295 CTCCCGCATATGTGACTTGATTT 59.121 43.478 17.89 0.00 0.00 2.17
2652 2873 3.470709 CTCCCGCATATGTGACTTGATT 58.529 45.455 17.89 0.00 0.00 2.57
2653 2874 2.808202 GCTCCCGCATATGTGACTTGAT 60.808 50.000 17.89 0.00 35.78 2.57
2654 2875 1.473257 GCTCCCGCATATGTGACTTGA 60.473 52.381 17.89 7.52 35.78 3.02
2655 2876 0.940126 GCTCCCGCATATGTGACTTG 59.060 55.000 17.89 6.09 35.78 3.16
2656 2877 0.541392 TGCTCCCGCATATGTGACTT 59.459 50.000 17.89 0.00 42.25 3.01
2657 2878 2.211375 TGCTCCCGCATATGTGACT 58.789 52.632 17.89 0.00 42.25 3.41
2658 2879 4.855105 TGCTCCCGCATATGTGAC 57.145 55.556 17.89 4.96 42.25 3.67
2666 2887 3.536917 CCTATCCGTGCTCCCGCA 61.537 66.667 0.00 0.00 45.60 5.69
2667 2888 4.971125 GCCTATCCGTGCTCCCGC 62.971 72.222 0.00 0.00 0.00 6.13
2668 2889 3.536917 TGCCTATCCGTGCTCCCG 61.537 66.667 0.00 0.00 0.00 5.14
2669 2890 2.109181 GTGCCTATCCGTGCTCCC 59.891 66.667 0.00 0.00 0.00 4.30
2670 2891 1.521681 GTGTGCCTATCCGTGCTCC 60.522 63.158 0.00 0.00 0.00 4.70
2671 2892 1.878522 CGTGTGCCTATCCGTGCTC 60.879 63.158 0.00 0.00 0.00 4.26
2672 2893 2.184322 CGTGTGCCTATCCGTGCT 59.816 61.111 0.00 0.00 0.00 4.40
2673 2894 3.564027 GCGTGTGCCTATCCGTGC 61.564 66.667 0.00 0.00 33.98 5.34
2690 2911 4.785453 GACTTGCCTGCTCCCCGG 62.785 72.222 0.00 0.00 0.00 5.73
2691 2912 3.672295 GAGACTTGCCTGCTCCCCG 62.672 68.421 0.00 0.00 0.00 5.73
2692 2913 2.270527 GAGACTTGCCTGCTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
2693 2914 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
2694 2915 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
2695 2916 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
2696 2917 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
2697 2918 2.435059 GGGACGAGACTTGCCTGC 60.435 66.667 0.00 0.00 0.00 4.85
2698 2919 0.970937 TAGGGGACGAGACTTGCCTG 60.971 60.000 0.00 0.00 0.00 4.85
2699 2920 0.252103 TTAGGGGACGAGACTTGCCT 60.252 55.000 0.00 0.00 0.00 4.75
2700 2921 0.175989 CTTAGGGGACGAGACTTGCC 59.824 60.000 0.00 0.00 0.00 4.52
2701 2922 1.183549 TCTTAGGGGACGAGACTTGC 58.816 55.000 0.00 0.00 0.00 4.01
2702 2923 2.761208 ACATCTTAGGGGACGAGACTTG 59.239 50.000 0.00 0.00 31.72 3.16
2703 2924 2.761208 CACATCTTAGGGGACGAGACTT 59.239 50.000 0.00 0.00 31.72 3.01
2704 2925 2.379972 CACATCTTAGGGGACGAGACT 58.620 52.381 0.00 0.00 31.72 3.24
2705 2926 1.202428 GCACATCTTAGGGGACGAGAC 60.202 57.143 0.00 0.00 31.72 3.36
2706 2927 1.112113 GCACATCTTAGGGGACGAGA 58.888 55.000 0.00 0.00 33.10 4.04
2707 2928 0.105039 GGCACATCTTAGGGGACGAG 59.895 60.000 0.00 0.00 0.00 4.18
2708 2929 0.616395 TGGCACATCTTAGGGGACGA 60.616 55.000 0.00 0.00 0.00 4.20
2709 2930 1.904771 TGGCACATCTTAGGGGACG 59.095 57.895 0.00 0.00 0.00 4.79
2720 2941 5.265958 AGCTGTAGAGAAGCATGGCACAT 62.266 47.826 0.00 0.00 43.37 3.21
2721 2942 4.000991 AGCTGTAGAGAAGCATGGCACA 62.001 50.000 0.00 0.00 43.37 4.57
2722 2943 1.012841 GCTGTAGAGAAGCATGGCAC 58.987 55.000 0.00 0.00 40.52 5.01
2723 2944 0.907486 AGCTGTAGAGAAGCATGGCA 59.093 50.000 0.00 0.00 43.37 4.92
2733 2954 3.062639 CGGCACACAATTAAGCTGTAGAG 59.937 47.826 0.00 0.00 0.00 2.43
2734 2955 3.000041 CGGCACACAATTAAGCTGTAGA 59.000 45.455 0.00 0.00 0.00 2.59
2740 2961 0.878416 TGGTCGGCACACAATTAAGC 59.122 50.000 0.00 0.00 0.00 3.09
2743 2964 3.692101 CCTATTTGGTCGGCACACAATTA 59.308 43.478 0.00 0.00 0.00 1.40
2746 2967 1.529226 CCTATTTGGTCGGCACACAA 58.471 50.000 0.00 0.00 0.00 3.33
2773 3009 3.300009 GCACACTGTTTACATTGTCAGC 58.700 45.455 3.23 2.43 37.61 4.26
2782 3018 1.871039 ACCATGTCGCACACTGTTTAC 59.129 47.619 0.00 0.00 0.00 2.01
2811 3047 2.737679 CGGGAGTAGATTTTGACGGGAC 60.738 54.545 0.00 0.00 0.00 4.46
2813 3049 1.479323 TCGGGAGTAGATTTTGACGGG 59.521 52.381 0.00 0.00 0.00 5.28
2848 3084 4.482113 TCATTGATGAAACCGTAGGCAGC 61.482 47.826 0.00 0.00 43.27 5.25
2856 3092 3.004734 GCCCCTAATCATTGATGAAACCG 59.995 47.826 0.00 0.00 40.69 4.44
2860 3096 3.118075 TGTCGCCCCTAATCATTGATGAA 60.118 43.478 0.00 0.00 40.69 2.57
3306 3548 1.550524 CACTGCAGCAGTAGGGTAAGA 59.449 52.381 27.80 0.00 43.43 2.10
3319 3561 6.037172 ACTGAACAGTAGTTTAAACACTGCAG 59.963 38.462 30.09 28.97 40.43 4.41
3321 3563 6.359480 ACTGAACAGTAGTTTAAACACTGC 57.641 37.500 30.09 22.10 40.43 4.40
3334 3582 6.526526 TGCCAATGTTAACTACTGAACAGTA 58.473 36.000 13.00 13.00 42.54 2.74
3335 3583 5.373222 TGCCAATGTTAACTACTGAACAGT 58.627 37.500 12.10 12.10 45.02 3.55
3336 3584 5.940192 TGCCAATGTTAACTACTGAACAG 57.060 39.130 7.22 0.00 38.86 3.16
3337 3585 5.825679 ACTTGCCAATGTTAACTACTGAACA 59.174 36.000 7.22 0.00 39.74 3.18
3338 3586 6.313744 ACTTGCCAATGTTAACTACTGAAC 57.686 37.500 7.22 0.00 0.00 3.18
3339 3587 6.544197 TCAACTTGCCAATGTTAACTACTGAA 59.456 34.615 7.22 0.00 0.00 3.02
3340 3588 6.017440 GTCAACTTGCCAATGTTAACTACTGA 60.017 38.462 7.22 0.00 0.00 3.41
3341 3589 6.142817 GTCAACTTGCCAATGTTAACTACTG 58.857 40.000 7.22 1.59 0.00 2.74
3342 3590 5.825679 TGTCAACTTGCCAATGTTAACTACT 59.174 36.000 7.22 0.00 0.00 2.57
3343 3591 6.067263 TGTCAACTTGCCAATGTTAACTAC 57.933 37.500 7.22 0.00 0.00 2.73
3371 3619 0.756442 ATGCACACCACAAGCAGGTT 60.756 50.000 0.00 0.00 42.14 3.50
3375 3623 1.462731 GGGAATGCACACCACAAGCA 61.463 55.000 12.14 0.00 43.14 3.91
3376 3624 1.181098 AGGGAATGCACACCACAAGC 61.181 55.000 12.14 0.00 0.00 4.01
3377 3625 2.198827 TAGGGAATGCACACCACAAG 57.801 50.000 12.14 0.00 0.00 3.16
3378 3626 2.666272 TTAGGGAATGCACACCACAA 57.334 45.000 12.14 3.70 0.00 3.33
3407 3656 2.307098 GAGGGCCATCTACTATGCCAAT 59.693 50.000 10.91 0.00 45.83 3.16
3428 3677 7.715249 TCATTTGCTGCTAATTAGTAACTAGGG 59.285 37.037 13.91 0.00 0.00 3.53
3583 3835 3.428452 CCACTTTGTGATATGCTTGGCTG 60.428 47.826 0.00 0.00 35.23 4.85
3625 3877 1.218875 TATACGGGCGATGCAAAGCG 61.219 55.000 10.07 6.64 0.00 4.68
3637 3889 1.546476 GGTGCCAGAGAGATATACGGG 59.454 57.143 0.00 0.00 0.00 5.28
3678 3930 2.253392 CGCAAAGCAGAAAAGGCTAG 57.747 50.000 0.00 0.00 41.66 3.42
3724 3976 1.769026 TTGTGCAAAGTGGCCAAGTA 58.231 45.000 7.24 0.00 0.00 2.24
3764 4016 4.943705 TCTGTTTGATGATCCTTTACAGCC 59.056 41.667 0.00 0.00 33.40 4.85
3802 4057 4.504097 TCAAGATAACATTCATCGCACTCG 59.496 41.667 0.00 0.00 0.00 4.18
3808 4063 6.562825 CGTGGATGTCAAGATAACATTCATCG 60.563 42.308 0.88 3.74 42.92 3.84
3816 4071 4.451096 ACAACACGTGGATGTCAAGATAAC 59.549 41.667 21.57 0.00 30.55 1.89
3965 4220 0.392461 TTCTCGGCTTGAATTCGGGG 60.392 55.000 0.04 0.00 0.00 5.73
3975 4230 2.672961 TCGACAATGATTCTCGGCTT 57.327 45.000 3.15 0.00 0.00 4.35
4031 4286 3.829601 TGGTTCAGACAAAAACAAGTGGT 59.170 39.130 0.00 0.00 0.00 4.16
4102 4359 1.202417 TGAGCTAATAGTGGCGAGTGC 60.202 52.381 0.00 0.00 36.11 4.40
4186 4444 2.626780 GGCACGGCAAAAGAGACCC 61.627 63.158 0.00 0.00 0.00 4.46
4366 4639 5.474532 ACAATGACATGAACAGCAGTACAAT 59.525 36.000 0.00 0.00 0.00 2.71
4392 4665 0.755686 GCCCATCACACCAACCAAAA 59.244 50.000 0.00 0.00 0.00 2.44
4451 4725 4.081420 CAGCCCACAAGATTGTACTCTACT 60.081 45.833 0.00 0.00 39.91 2.57
4452 4726 4.184629 CAGCCCACAAGATTGTACTCTAC 58.815 47.826 0.00 0.00 39.91 2.59
4453 4727 3.369471 GCAGCCCACAAGATTGTACTCTA 60.369 47.826 0.00 0.00 39.91 2.43
4454 4728 2.616510 GCAGCCCACAAGATTGTACTCT 60.617 50.000 0.00 0.00 39.91 3.24
4455 4729 1.740025 GCAGCCCACAAGATTGTACTC 59.260 52.381 0.00 0.00 39.91 2.59
4717 4991 8.254178 TGTTTCCATAATTAACGTACGTCATT 57.746 30.769 23.05 22.60 0.00 2.57
4722 4996 6.957077 CACCTTGTTTCCATAATTAACGTACG 59.043 38.462 15.01 15.01 0.00 3.67
4737 5011 2.548057 TCGAGTTGCATCACCTTGTTTC 59.452 45.455 0.00 0.00 0.00 2.78
4859 5133 7.627298 TTCTACTGTCGAGCTTTAAGTATCT 57.373 36.000 0.00 0.00 0.00 1.98
4860 5134 8.684973 TTTTCTACTGTCGAGCTTTAAGTATC 57.315 34.615 0.00 0.00 0.00 2.24
4861 5135 9.088512 CATTTTCTACTGTCGAGCTTTAAGTAT 57.911 33.333 0.00 0.00 0.00 2.12
4862 5136 8.301720 TCATTTTCTACTGTCGAGCTTTAAGTA 58.698 33.333 0.00 0.00 0.00 2.24
4863 5137 7.152645 TCATTTTCTACTGTCGAGCTTTAAGT 58.847 34.615 0.00 0.00 0.00 2.24
4913 5187 7.826744 TGTTTAATGTTGCACTGGATAGATGTA 59.173 33.333 0.00 0.00 0.00 2.29
4962 5244 3.583086 ACTGCTTAAGCTGAACCTCCTAA 59.417 43.478 33.10 8.21 41.71 2.69
4992 5274 7.145932 ACTTTGTAAGAGATGTTTATGGTGC 57.854 36.000 0.00 0.00 0.00 5.01
5026 5308 4.271807 TGCATTATATTTTGGTCCCCCA 57.728 40.909 0.00 0.00 39.65 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.