Multiple sequence alignment - TraesCS7A01G201900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G201900 chr7A 100.000 4609 0 0 1 4609 163618924 163614316 0.000000e+00 8512.0
1 TraesCS7A01G201900 chr7D 94.194 1705 89 6 2906 4609 162822667 162820972 0.000000e+00 2591.0
2 TraesCS7A01G201900 chr7D 90.963 1693 65 25 512 2132 162824356 162822680 0.000000e+00 2198.0
3 TraesCS7A01G201900 chr7D 88.315 1027 114 4 3229 4249 162793765 162792739 0.000000e+00 1227.0
4 TraesCS7A01G201900 chr7D 94.231 312 16 2 205 515 565664461 565664771 4.170000e-130 475.0
5 TraesCS7A01G201900 chr7D 93.396 318 20 1 208 524 444357230 444356913 1.940000e-128 470.0
6 TraesCS7A01G201900 chr7D 89.264 326 34 1 2906 3231 162794186 162793862 1.540000e-109 407.0
7 TraesCS7A01G201900 chr7D 91.905 210 15 2 1 210 162824558 162824351 4.510000e-75 292.0
8 TraesCS7A01G201900 chr7D 97.917 48 1 0 2085 2132 162794248 162794201 2.960000e-12 84.2
9 TraesCS7A01G201900 chr2D 95.148 742 35 1 2165 2905 568118360 568117619 0.000000e+00 1170.0
10 TraesCS7A01G201900 chr2D 84.014 857 107 17 1169 2025 110843192 110842366 0.000000e+00 797.0
11 TraesCS7A01G201900 chr2D 93.871 310 18 1 205 513 76640434 76640743 2.510000e-127 466.0
12 TraesCS7A01G201900 chr3A 95.493 710 26 2 2204 2907 516795728 516795019 0.000000e+00 1129.0
13 TraesCS7A01G201900 chr3A 93.324 749 46 4 2159 2905 486036959 486037705 0.000000e+00 1103.0
14 TraesCS7A01G201900 chr3A 90.336 745 67 5 2165 2905 595761178 595761921 0.000000e+00 972.0
15 TraesCS7A01G201900 chr3A 95.693 534 23 0 2164 2697 52204995 52205528 0.000000e+00 859.0
16 TraesCS7A01G201900 chr4A 93.666 742 44 3 2165 2906 591073161 591072423 0.000000e+00 1107.0
17 TraesCS7A01G201900 chr4A 85.797 866 114 7 1160 2025 620704610 620703754 0.000000e+00 909.0
18 TraesCS7A01G201900 chr6A 91.655 743 53 5 2165 2905 84909977 84910712 0.000000e+00 1020.0
19 TraesCS7A01G201900 chr6A 93.631 314 19 1 204 516 408052900 408053213 6.980000e-128 468.0
20 TraesCS7A01G201900 chr5A 90.013 741 65 7 2170 2907 643580452 643581186 0.000000e+00 950.0
21 TraesCS7A01G201900 chr5D 85.780 872 103 15 1160 2025 549262026 549261170 0.000000e+00 904.0
22 TraesCS7A01G201900 chr5D 85.448 859 99 18 1169 2026 549548150 549547317 0.000000e+00 870.0
23 TraesCS7A01G201900 chr5D 84.873 866 122 8 1160 2025 549229691 549228835 0.000000e+00 865.0
24 TraesCS7A01G201900 chr5D 85.215 859 101 17 1169 2026 549430065 549429232 0.000000e+00 859.0
25 TraesCS7A01G201900 chr5B 85.104 866 120 7 1160 2025 700856499 700855643 0.000000e+00 876.0
26 TraesCS7A01G201900 chr3B 91.024 635 38 6 2270 2904 688382983 688383598 0.000000e+00 839.0
27 TraesCS7A01G201900 chr2B 83.683 858 108 19 1169 2025 159971025 159970199 0.000000e+00 780.0
28 TraesCS7A01G201900 chr2B 92.260 323 23 2 203 524 247519313 247519634 1.510000e-124 457.0
29 TraesCS7A01G201900 chr2A 83.803 852 106 19 1169 2019 107182759 107181939 0.000000e+00 780.0
30 TraesCS7A01G201900 chr6D 85.935 711 79 11 2165 2873 457092161 457092852 0.000000e+00 739.0
31 TraesCS7A01G201900 chr6D 94.268 314 17 1 204 516 337600243 337599930 3.230000e-131 479.0
32 TraesCS7A01G201900 chr1D 94.872 312 15 1 205 515 313817028 313817339 1.930000e-133 486.0
33 TraesCS7A01G201900 chr1D 93.610 313 18 2 204 515 361354960 361354649 2.510000e-127 466.0
34 TraesCS7A01G201900 chr3D 93.631 314 19 1 204 516 20892900 20893213 6.980000e-128 468.0
35 TraesCS7A01G201900 chr1A 81.443 97 16 1 621 715 329231689 329231785 1.370000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G201900 chr7A 163614316 163618924 4608 True 8512.000000 8512 100.000 1 4609 1 chr7A.!!$R1 4608
1 TraesCS7A01G201900 chr7D 162820972 162824558 3586 True 1693.666667 2591 92.354 1 4609 3 chr7D.!!$R3 4608
2 TraesCS7A01G201900 chr7D 162792739 162794248 1509 True 572.733333 1227 91.832 2085 4249 3 chr7D.!!$R2 2164
3 TraesCS7A01G201900 chr2D 568117619 568118360 741 True 1170.000000 1170 95.148 2165 2905 1 chr2D.!!$R2 740
4 TraesCS7A01G201900 chr2D 110842366 110843192 826 True 797.000000 797 84.014 1169 2025 1 chr2D.!!$R1 856
5 TraesCS7A01G201900 chr3A 516795019 516795728 709 True 1129.000000 1129 95.493 2204 2907 1 chr3A.!!$R1 703
6 TraesCS7A01G201900 chr3A 486036959 486037705 746 False 1103.000000 1103 93.324 2159 2905 1 chr3A.!!$F2 746
7 TraesCS7A01G201900 chr3A 595761178 595761921 743 False 972.000000 972 90.336 2165 2905 1 chr3A.!!$F3 740
8 TraesCS7A01G201900 chr3A 52204995 52205528 533 False 859.000000 859 95.693 2164 2697 1 chr3A.!!$F1 533
9 TraesCS7A01G201900 chr4A 591072423 591073161 738 True 1107.000000 1107 93.666 2165 2906 1 chr4A.!!$R1 741
10 TraesCS7A01G201900 chr4A 620703754 620704610 856 True 909.000000 909 85.797 1160 2025 1 chr4A.!!$R2 865
11 TraesCS7A01G201900 chr6A 84909977 84910712 735 False 1020.000000 1020 91.655 2165 2905 1 chr6A.!!$F1 740
12 TraesCS7A01G201900 chr5A 643580452 643581186 734 False 950.000000 950 90.013 2170 2907 1 chr5A.!!$F1 737
13 TraesCS7A01G201900 chr5D 549261170 549262026 856 True 904.000000 904 85.780 1160 2025 1 chr5D.!!$R2 865
14 TraesCS7A01G201900 chr5D 549547317 549548150 833 True 870.000000 870 85.448 1169 2026 1 chr5D.!!$R4 857
15 TraesCS7A01G201900 chr5D 549228835 549229691 856 True 865.000000 865 84.873 1160 2025 1 chr5D.!!$R1 865
16 TraesCS7A01G201900 chr5D 549429232 549430065 833 True 859.000000 859 85.215 1169 2026 1 chr5D.!!$R3 857
17 TraesCS7A01G201900 chr5B 700855643 700856499 856 True 876.000000 876 85.104 1160 2025 1 chr5B.!!$R1 865
18 TraesCS7A01G201900 chr3B 688382983 688383598 615 False 839.000000 839 91.024 2270 2904 1 chr3B.!!$F1 634
19 TraesCS7A01G201900 chr2B 159970199 159971025 826 True 780.000000 780 83.683 1169 2025 1 chr2B.!!$R1 856
20 TraesCS7A01G201900 chr2A 107181939 107182759 820 True 780.000000 780 83.803 1169 2019 1 chr2A.!!$R1 850
21 TraesCS7A01G201900 chr6D 457092161 457092852 691 False 739.000000 739 85.935 2165 2873 1 chr6D.!!$F1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 488 0.027194 CATGGCAGCGAAATCAGTCG 59.973 55.0 0.00 0.0 43.98 4.18 F
488 489 0.108186 ATGGCAGCGAAATCAGTCGA 60.108 50.0 0.00 0.0 43.86 4.20 F
2026 2100 0.392998 CAAAGCGCAGTCCCAGGTAT 60.393 55.0 11.47 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1632 1706 0.037697 CGTTGCCACAGTAGTGCCTA 60.038 55.0 0.00 0.00 44.53 3.93 R
2034 2108 0.171007 GGTTAACGACCGTCGATGGA 59.829 55.0 30.28 4.08 43.74 3.41 R
3644 3843 0.317160 TTGTGATCAACCGCTCGACT 59.683 50.0 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.386731 GTTGTTGCATACACACGGCC 60.387 55.000 0.00 0.00 36.21 6.13
33 34 1.518325 CATACACACGGCCAGAAACA 58.482 50.000 2.24 0.00 0.00 2.83
34 35 2.083774 CATACACACGGCCAGAAACAT 58.916 47.619 2.24 0.00 0.00 2.71
36 37 1.398692 ACACACGGCCAGAAACATTT 58.601 45.000 2.24 0.00 0.00 2.32
46 47 2.343101 CAGAAACATTTACCTCGCCGA 58.657 47.619 0.00 0.00 0.00 5.54
49 50 0.392060 AACATTTACCTCGCCGACCC 60.392 55.000 0.00 0.00 0.00 4.46
51 52 0.391927 CATTTACCTCGCCGACCCAA 60.392 55.000 0.00 0.00 0.00 4.12
53 54 2.175035 TTTACCTCGCCGACCCAAGG 62.175 60.000 0.00 0.00 34.94 3.61
54 55 3.892104 TACCTCGCCGACCCAAGGT 62.892 63.158 0.53 0.53 44.24 3.50
62 63 2.203480 GACCCAAGGTGCTGGCAA 60.203 61.111 0.00 0.00 35.25 4.52
73 74 5.116084 AGGTGCTGGCAAGAATCTATAAA 57.884 39.130 0.00 0.00 0.00 1.40
75 76 6.131961 AGGTGCTGGCAAGAATCTATAAATT 58.868 36.000 0.00 0.00 0.00 1.82
184 185 3.189702 GCAAACCCAAGTGTTAGCGATAA 59.810 43.478 0.00 0.00 0.00 1.75
211 212 5.731957 CTAGTAAGGAGGAATCTAAGGCC 57.268 47.826 0.00 0.00 0.00 5.19
212 213 3.319220 AGTAAGGAGGAATCTAAGGCCC 58.681 50.000 0.00 0.00 0.00 5.80
213 214 2.596411 AAGGAGGAATCTAAGGCCCT 57.404 50.000 0.00 0.00 0.00 5.19
214 215 1.813102 AGGAGGAATCTAAGGCCCTG 58.187 55.000 0.00 0.00 0.00 4.45
215 216 1.010170 AGGAGGAATCTAAGGCCCTGT 59.990 52.381 0.00 0.00 0.00 4.00
216 217 1.847088 GGAGGAATCTAAGGCCCTGTT 59.153 52.381 0.00 0.00 0.00 3.16
217 218 2.242452 GGAGGAATCTAAGGCCCTGTTT 59.758 50.000 0.00 0.00 0.00 2.83
218 219 3.282885 GAGGAATCTAAGGCCCTGTTTG 58.717 50.000 0.00 0.00 0.00 2.93
219 220 2.024941 AGGAATCTAAGGCCCTGTTTGG 60.025 50.000 0.00 0.00 0.00 3.28
220 221 2.291605 GGAATCTAAGGCCCTGTTTGGT 60.292 50.000 0.00 0.00 0.00 3.67
221 222 3.431415 GAATCTAAGGCCCTGTTTGGTT 58.569 45.455 0.00 0.00 0.00 3.67
222 223 2.579410 TCTAAGGCCCTGTTTGGTTC 57.421 50.000 0.00 0.00 0.00 3.62
223 224 1.165270 CTAAGGCCCTGTTTGGTTCG 58.835 55.000 0.00 0.00 0.00 3.95
224 225 0.250989 TAAGGCCCTGTTTGGTTCGG 60.251 55.000 0.00 0.00 0.00 4.30
225 226 3.680786 GGCCCTGTTTGGTTCGGC 61.681 66.667 0.00 0.00 38.96 5.54
226 227 2.597510 GCCCTGTTTGGTTCGGCT 60.598 61.111 0.00 0.00 36.65 5.52
227 228 2.919494 GCCCTGTTTGGTTCGGCTG 61.919 63.158 0.00 0.00 36.65 4.85
228 229 1.528309 CCCTGTTTGGTTCGGCTGT 60.528 57.895 0.00 0.00 0.00 4.40
229 230 1.654220 CCTGTTTGGTTCGGCTGTG 59.346 57.895 0.00 0.00 0.00 3.66
230 231 1.654220 CTGTTTGGTTCGGCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
231 232 0.817634 CTGTTTGGTTCGGCTGTGGA 60.818 55.000 0.00 0.00 0.00 4.02
232 233 0.179004 TGTTTGGTTCGGCTGTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
233 234 0.958822 GTTTGGTTCGGCTGTGGATT 59.041 50.000 0.00 0.00 0.00 3.01
234 235 1.339929 GTTTGGTTCGGCTGTGGATTT 59.660 47.619 0.00 0.00 0.00 2.17
235 236 1.243902 TTGGTTCGGCTGTGGATTTC 58.756 50.000 0.00 0.00 0.00 2.17
236 237 0.400213 TGGTTCGGCTGTGGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
237 238 1.626321 TGGTTCGGCTGTGGATTTCTA 59.374 47.619 0.00 0.00 0.00 2.10
238 239 2.039216 TGGTTCGGCTGTGGATTTCTAA 59.961 45.455 0.00 0.00 0.00 2.10
239 240 3.078837 GGTTCGGCTGTGGATTTCTAAA 58.921 45.455 0.00 0.00 0.00 1.85
240 241 3.504520 GGTTCGGCTGTGGATTTCTAAAA 59.495 43.478 0.00 0.00 0.00 1.52
241 242 4.379499 GGTTCGGCTGTGGATTTCTAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
242 243 2.747446 TCGGCTGTGGATTTCTAAAAGC 59.253 45.455 0.00 0.00 0.00 3.51
243 244 2.487762 CGGCTGTGGATTTCTAAAAGCA 59.512 45.455 0.00 0.00 0.00 3.91
244 245 3.426695 CGGCTGTGGATTTCTAAAAGCAG 60.427 47.826 0.00 0.00 0.00 4.24
245 246 3.505836 GCTGTGGATTTCTAAAAGCAGC 58.494 45.455 0.00 0.00 40.66 5.25
246 247 3.192212 GCTGTGGATTTCTAAAAGCAGCT 59.808 43.478 0.00 0.00 43.08 4.24
247 248 4.730657 CTGTGGATTTCTAAAAGCAGCTG 58.269 43.478 10.11 10.11 0.00 4.24
248 249 4.144297 TGTGGATTTCTAAAAGCAGCTGT 58.856 39.130 16.64 0.00 0.00 4.40
249 250 4.022935 TGTGGATTTCTAAAAGCAGCTGTG 60.023 41.667 16.64 0.00 0.00 3.66
250 251 4.216257 GTGGATTTCTAAAAGCAGCTGTGA 59.784 41.667 16.64 1.92 0.00 3.58
251 252 4.826733 TGGATTTCTAAAAGCAGCTGTGAA 59.173 37.500 16.64 7.75 0.00 3.18
252 253 5.301551 TGGATTTCTAAAAGCAGCTGTGAAA 59.698 36.000 16.64 15.06 0.00 2.69
253 254 6.183360 TGGATTTCTAAAAGCAGCTGTGAAAA 60.183 34.615 16.64 7.20 0.00 2.29
254 255 6.701400 GGATTTCTAAAAGCAGCTGTGAAAAA 59.299 34.615 16.64 7.71 0.00 1.94
255 256 7.386025 GGATTTCTAAAAGCAGCTGTGAAAAAT 59.614 33.333 16.64 11.76 0.00 1.82
256 257 7.698836 TTTCTAAAAGCAGCTGTGAAAAATC 57.301 32.000 16.64 0.00 0.00 2.17
257 258 6.639632 TCTAAAAGCAGCTGTGAAAAATCT 57.360 33.333 16.64 0.00 0.00 2.40
258 259 6.441274 TCTAAAAGCAGCTGTGAAAAATCTG 58.559 36.000 16.64 0.00 0.00 2.90
260 261 2.719426 GCAGCTGTGAAAAATCTGCT 57.281 45.000 16.64 0.00 44.71 4.24
261 262 3.837213 GCAGCTGTGAAAAATCTGCTA 57.163 42.857 16.64 0.00 44.71 3.49
262 263 4.367386 GCAGCTGTGAAAAATCTGCTAT 57.633 40.909 16.64 0.00 44.71 2.97
263 264 4.103357 GCAGCTGTGAAAAATCTGCTATG 58.897 43.478 16.64 0.00 44.71 2.23
264 265 4.669318 CAGCTGTGAAAAATCTGCTATGG 58.331 43.478 5.25 0.00 37.16 2.74
265 266 4.397103 CAGCTGTGAAAAATCTGCTATGGA 59.603 41.667 5.25 0.00 37.16 3.41
266 267 5.012239 AGCTGTGAAAAATCTGCTATGGAA 58.988 37.500 0.00 0.00 37.16 3.53
267 268 5.477984 AGCTGTGAAAAATCTGCTATGGAAA 59.522 36.000 0.00 0.00 37.16 3.13
268 269 6.015180 AGCTGTGAAAAATCTGCTATGGAAAA 60.015 34.615 0.00 0.00 37.16 2.29
269 270 6.646240 GCTGTGAAAAATCTGCTATGGAAAAA 59.354 34.615 0.00 0.00 0.00 1.94
270 271 7.359514 GCTGTGAAAAATCTGCTATGGAAAAAC 60.360 37.037 0.00 0.00 0.00 2.43
271 272 7.495901 TGTGAAAAATCTGCTATGGAAAAACA 58.504 30.769 0.00 0.00 0.00 2.83
272 273 7.652909 TGTGAAAAATCTGCTATGGAAAAACAG 59.347 33.333 0.00 0.00 0.00 3.16
273 274 6.646240 TGAAAAATCTGCTATGGAAAAACAGC 59.354 34.615 0.00 0.00 34.56 4.40
274 275 5.990120 AAATCTGCTATGGAAAAACAGCT 57.010 34.783 0.00 0.00 35.05 4.24
275 276 4.978083 ATCTGCTATGGAAAAACAGCTG 57.022 40.909 13.48 13.48 35.05 4.24
276 277 3.754965 TCTGCTATGGAAAAACAGCTGT 58.245 40.909 15.25 15.25 35.30 4.40
277 278 3.503363 TCTGCTATGGAAAAACAGCTGTG 59.497 43.478 22.49 5.33 35.30 3.66
278 279 2.557924 TGCTATGGAAAAACAGCTGTGG 59.442 45.455 22.49 0.00 35.05 4.17
279 280 2.819608 GCTATGGAAAAACAGCTGTGGA 59.180 45.455 22.49 1.04 0.00 4.02
280 281 3.255642 GCTATGGAAAAACAGCTGTGGAA 59.744 43.478 22.49 3.73 0.00 3.53
281 282 4.261994 GCTATGGAAAAACAGCTGTGGAAA 60.262 41.667 22.49 4.88 0.00 3.13
282 283 4.751767 ATGGAAAAACAGCTGTGGAAAA 57.248 36.364 22.49 5.47 0.00 2.29
283 284 4.751767 TGGAAAAACAGCTGTGGAAAAT 57.248 36.364 22.49 0.00 0.00 1.82
284 285 4.692228 TGGAAAAACAGCTGTGGAAAATC 58.308 39.130 22.49 12.62 0.00 2.17
285 286 4.405358 TGGAAAAACAGCTGTGGAAAATCT 59.595 37.500 22.49 0.00 0.00 2.40
286 287 4.746611 GGAAAAACAGCTGTGGAAAATCTG 59.253 41.667 22.49 0.00 0.00 2.90
287 288 5.451798 GGAAAAACAGCTGTGGAAAATCTGA 60.452 40.000 22.49 0.00 0.00 3.27
288 289 5.796424 AAAACAGCTGTGGAAAATCTGAT 57.204 34.783 22.49 0.00 0.00 2.90
289 290 4.778534 AACAGCTGTGGAAAATCTGATG 57.221 40.909 22.49 0.00 0.00 3.07
290 291 3.759581 ACAGCTGTGGAAAATCTGATGT 58.240 40.909 20.97 0.00 0.00 3.06
291 292 3.504906 ACAGCTGTGGAAAATCTGATGTG 59.495 43.478 20.97 0.00 32.73 3.21
292 293 3.754850 CAGCTGTGGAAAATCTGATGTGA 59.245 43.478 5.25 0.00 0.00 3.58
293 294 4.216902 CAGCTGTGGAAAATCTGATGTGAA 59.783 41.667 5.25 0.00 0.00 3.18
294 295 4.828939 AGCTGTGGAAAATCTGATGTGAAA 59.171 37.500 0.00 0.00 0.00 2.69
295 296 5.302568 AGCTGTGGAAAATCTGATGTGAAAA 59.697 36.000 0.00 0.00 0.00 2.29
296 297 5.984926 GCTGTGGAAAATCTGATGTGAAAAA 59.015 36.000 0.00 0.00 0.00 1.94
297 298 6.145048 GCTGTGGAAAATCTGATGTGAAAAAG 59.855 38.462 0.00 0.00 0.00 2.27
298 299 7.345422 TGTGGAAAATCTGATGTGAAAAAGA 57.655 32.000 0.00 0.00 0.00 2.52
299 300 7.954835 TGTGGAAAATCTGATGTGAAAAAGAT 58.045 30.769 0.00 0.00 0.00 2.40
300 301 7.868922 TGTGGAAAATCTGATGTGAAAAAGATG 59.131 33.333 0.00 0.00 29.93 2.90
301 302 7.869429 GTGGAAAATCTGATGTGAAAAAGATGT 59.131 33.333 0.00 0.00 29.93 3.06
302 303 9.076781 TGGAAAATCTGATGTGAAAAAGATGTA 57.923 29.630 0.00 0.00 29.93 2.29
303 304 9.565213 GGAAAATCTGATGTGAAAAAGATGTAG 57.435 33.333 0.00 0.00 29.93 2.74
304 305 9.565213 GAAAATCTGATGTGAAAAAGATGTAGG 57.435 33.333 0.00 0.00 29.93 3.18
305 306 8.641498 AAATCTGATGTGAAAAAGATGTAGGT 57.359 30.769 0.00 0.00 29.93 3.08
306 307 8.641498 AATCTGATGTGAAAAAGATGTAGGTT 57.359 30.769 0.00 0.00 29.93 3.50
307 308 9.739276 AATCTGATGTGAAAAAGATGTAGGTTA 57.261 29.630 0.00 0.00 29.93 2.85
308 309 9.911788 ATCTGATGTGAAAAAGATGTAGGTTAT 57.088 29.630 0.00 0.00 0.00 1.89
309 310 9.739276 TCTGATGTGAAAAAGATGTAGGTTATT 57.261 29.630 0.00 0.00 0.00 1.40
312 313 9.573133 GATGTGAAAAAGATGTAGGTTATTTGG 57.427 33.333 0.00 0.00 0.00 3.28
313 314 7.375053 TGTGAAAAAGATGTAGGTTATTTGGC 58.625 34.615 0.00 0.00 0.00 4.52
314 315 7.014711 TGTGAAAAAGATGTAGGTTATTTGGCA 59.985 33.333 0.00 0.00 0.00 4.92
315 316 7.870445 GTGAAAAAGATGTAGGTTATTTGGCAA 59.130 33.333 0.00 0.00 0.00 4.52
316 317 8.424918 TGAAAAAGATGTAGGTTATTTGGCAAA 58.575 29.630 16.01 16.01 0.00 3.68
317 318 8.601845 AAAAAGATGTAGGTTATTTGGCAAAC 57.398 30.769 16.00 3.12 0.00 2.93
318 319 5.914898 AGATGTAGGTTATTTGGCAAACC 57.085 39.130 16.00 13.12 44.59 3.27
319 320 5.329399 AGATGTAGGTTATTTGGCAAACCA 58.671 37.500 16.00 3.23 46.29 3.67
329 330 1.825090 TGGCAAACCAGCTGATACAG 58.175 50.000 17.39 0.00 42.67 2.74
345 346 7.807687 CTGATACAGCTTTTTCAGATTTTGG 57.192 36.000 13.26 0.00 38.25 3.28
346 347 6.158598 TGATACAGCTTTTTCAGATTTTGGC 58.841 36.000 0.00 0.00 0.00 4.52
347 348 3.732212 ACAGCTTTTTCAGATTTTGGCC 58.268 40.909 0.00 0.00 0.00 5.36
348 349 3.069289 CAGCTTTTTCAGATTTTGGCCC 58.931 45.455 0.00 0.00 0.00 5.80
349 350 2.705127 AGCTTTTTCAGATTTTGGCCCA 59.295 40.909 0.00 0.00 0.00 5.36
350 351 2.807967 GCTTTTTCAGATTTTGGCCCAC 59.192 45.455 0.00 0.00 0.00 4.61
351 352 3.743899 GCTTTTTCAGATTTTGGCCCACA 60.744 43.478 0.00 0.00 0.00 4.17
352 353 3.749665 TTTTCAGATTTTGGCCCACAG 57.250 42.857 0.00 0.00 0.00 3.66
353 354 0.968405 TTCAGATTTTGGCCCACAGC 59.032 50.000 0.00 0.00 42.60 4.40
354 355 1.213537 CAGATTTTGGCCCACAGCG 59.786 57.895 0.00 0.00 45.17 5.18
355 356 1.978617 AGATTTTGGCCCACAGCGG 60.979 57.895 0.00 0.00 45.17 5.52
356 357 1.976474 GATTTTGGCCCACAGCGGA 60.976 57.895 0.00 0.00 45.17 5.54
357 358 1.531739 GATTTTGGCCCACAGCGGAA 61.532 55.000 0.00 0.00 45.17 4.30
358 359 0.904394 ATTTTGGCCCACAGCGGAAT 60.904 50.000 0.00 0.00 45.17 3.01
359 360 1.531739 TTTTGGCCCACAGCGGAATC 61.532 55.000 0.00 0.00 45.17 2.52
360 361 2.705312 TTTGGCCCACAGCGGAATCA 62.705 55.000 0.00 0.00 45.17 2.57
361 362 2.825836 GGCCCACAGCGGAATCAG 60.826 66.667 0.00 0.00 45.17 2.90
362 363 2.268920 GCCCACAGCGGAATCAGA 59.731 61.111 0.00 0.00 36.56 3.27
363 364 1.153086 GCCCACAGCGGAATCAGAT 60.153 57.895 0.00 0.00 36.56 2.90
364 365 0.749454 GCCCACAGCGGAATCAGATT 60.749 55.000 0.00 0.00 36.56 2.40
365 366 1.755179 CCCACAGCGGAATCAGATTT 58.245 50.000 0.00 0.00 36.56 2.17
366 367 2.094675 CCCACAGCGGAATCAGATTTT 58.905 47.619 0.00 0.00 36.56 1.82
367 368 2.159338 CCCACAGCGGAATCAGATTTTG 60.159 50.000 0.00 0.00 36.56 2.44
368 369 2.159338 CCACAGCGGAATCAGATTTTGG 60.159 50.000 0.00 0.00 36.56 3.28
369 370 2.094675 ACAGCGGAATCAGATTTTGGG 58.905 47.619 0.00 0.00 0.00 4.12
370 371 2.290896 ACAGCGGAATCAGATTTTGGGA 60.291 45.455 0.00 0.00 0.00 4.37
371 372 2.754552 CAGCGGAATCAGATTTTGGGAA 59.245 45.455 0.00 0.00 0.00 3.97
372 373 3.019564 AGCGGAATCAGATTTTGGGAAG 58.980 45.455 0.00 0.00 0.00 3.46
373 374 2.480244 GCGGAATCAGATTTTGGGAAGC 60.480 50.000 0.00 0.00 0.00 3.86
374 375 2.754552 CGGAATCAGATTTTGGGAAGCA 59.245 45.455 0.00 0.00 0.00 3.91
375 376 3.382546 CGGAATCAGATTTTGGGAAGCAT 59.617 43.478 0.00 0.00 0.00 3.79
376 377 4.690122 GGAATCAGATTTTGGGAAGCATG 58.310 43.478 0.00 0.00 0.00 4.06
377 378 4.161001 GGAATCAGATTTTGGGAAGCATGT 59.839 41.667 0.00 0.00 0.00 3.21
378 379 4.996788 ATCAGATTTTGGGAAGCATGTC 57.003 40.909 0.00 0.00 0.00 3.06
379 380 3.091545 TCAGATTTTGGGAAGCATGTCC 58.908 45.455 0.00 0.00 36.90 4.02
380 381 3.094572 CAGATTTTGGGAAGCATGTCCT 58.905 45.455 2.63 0.00 37.85 3.85
381 382 4.018506 TCAGATTTTGGGAAGCATGTCCTA 60.019 41.667 2.63 0.00 37.85 2.94
382 383 4.337555 CAGATTTTGGGAAGCATGTCCTAG 59.662 45.833 2.63 0.00 37.85 3.02
383 384 4.228210 AGATTTTGGGAAGCATGTCCTAGA 59.772 41.667 2.63 0.00 37.85 2.43
384 385 3.350219 TTTGGGAAGCATGTCCTAGAC 57.650 47.619 2.63 0.00 37.85 2.59
385 386 2.254152 TGGGAAGCATGTCCTAGACT 57.746 50.000 2.63 0.00 37.85 3.24
386 387 1.833630 TGGGAAGCATGTCCTAGACTG 59.166 52.381 2.63 0.00 37.85 3.51
387 388 1.474143 GGGAAGCATGTCCTAGACTGC 60.474 57.143 2.63 9.64 37.85 4.40
388 389 1.484240 GGAAGCATGTCCTAGACTGCT 59.516 52.381 12.74 12.74 43.30 4.24
390 391 2.977772 AGCATGTCCTAGACTGCTTC 57.022 50.000 12.74 0.00 40.90 3.86
391 392 1.484240 AGCATGTCCTAGACTGCTTCC 59.516 52.381 12.74 0.00 40.90 3.46
392 393 1.804372 GCATGTCCTAGACTGCTTCCG 60.804 57.143 0.00 0.00 35.49 4.30
393 394 0.461961 ATGTCCTAGACTGCTTCCGC 59.538 55.000 0.00 0.00 33.15 5.54
394 395 0.612174 TGTCCTAGACTGCTTCCGCT 60.612 55.000 0.00 0.00 36.97 5.52
395 396 0.533032 GTCCTAGACTGCTTCCGCTT 59.467 55.000 0.00 0.00 36.97 4.68
396 397 1.066787 GTCCTAGACTGCTTCCGCTTT 60.067 52.381 0.00 0.00 36.97 3.51
397 398 1.623811 TCCTAGACTGCTTCCGCTTTT 59.376 47.619 0.00 0.00 36.97 2.27
398 399 1.734465 CCTAGACTGCTTCCGCTTTTG 59.266 52.381 0.00 0.00 36.97 2.44
399 400 1.734465 CTAGACTGCTTCCGCTTTTGG 59.266 52.381 0.00 0.00 36.97 3.28
400 401 0.179018 AGACTGCTTCCGCTTTTGGT 60.179 50.000 0.00 0.00 36.97 3.67
401 402 0.668535 GACTGCTTCCGCTTTTGGTT 59.331 50.000 0.00 0.00 36.97 3.67
402 403 0.668535 ACTGCTTCCGCTTTTGGTTC 59.331 50.000 0.00 0.00 36.97 3.62
403 404 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
404 405 1.066908 CTGCTTCCGCTTTTGGTTCAA 59.933 47.619 0.00 0.00 36.97 2.69
405 406 1.478510 TGCTTCCGCTTTTGGTTCAAA 59.521 42.857 0.00 0.00 36.97 2.69
406 407 2.102252 TGCTTCCGCTTTTGGTTCAAAT 59.898 40.909 0.00 0.00 33.19 2.32
407 408 3.130633 GCTTCCGCTTTTGGTTCAAATT 58.869 40.909 0.00 0.00 33.19 1.82
408 409 3.559655 GCTTCCGCTTTTGGTTCAAATTT 59.440 39.130 0.00 0.00 33.19 1.82
409 410 4.035091 GCTTCCGCTTTTGGTTCAAATTTT 59.965 37.500 0.00 0.00 33.19 1.82
410 411 5.476752 TTCCGCTTTTGGTTCAAATTTTG 57.523 34.783 2.59 2.59 33.19 2.44
411 412 3.873952 TCCGCTTTTGGTTCAAATTTTGG 59.126 39.130 9.18 0.00 33.19 3.28
412 413 3.625313 CCGCTTTTGGTTCAAATTTTGGT 59.375 39.130 9.18 0.00 33.19 3.67
413 414 4.811557 CCGCTTTTGGTTCAAATTTTGGTA 59.188 37.500 9.18 0.00 33.19 3.25
414 415 5.050431 CCGCTTTTGGTTCAAATTTTGGTAG 60.050 40.000 9.18 0.00 33.19 3.18
415 416 5.558083 CGCTTTTGGTTCAAATTTTGGTAGC 60.558 40.000 9.18 7.98 33.19 3.58
416 417 5.558083 GCTTTTGGTTCAAATTTTGGTAGCG 60.558 40.000 9.18 0.00 33.19 4.26
417 418 3.651803 TGGTTCAAATTTTGGTAGCGG 57.348 42.857 9.18 0.00 0.00 5.52
418 419 3.223435 TGGTTCAAATTTTGGTAGCGGA 58.777 40.909 9.18 0.00 0.00 5.54
419 420 3.829601 TGGTTCAAATTTTGGTAGCGGAT 59.170 39.130 9.18 0.00 0.00 4.18
420 421 4.282195 TGGTTCAAATTTTGGTAGCGGATT 59.718 37.500 9.18 0.00 0.00 3.01
421 422 5.221541 TGGTTCAAATTTTGGTAGCGGATTT 60.222 36.000 9.18 0.00 0.00 2.17
422 423 5.347635 GGTTCAAATTTTGGTAGCGGATTTC 59.652 40.000 9.18 0.00 0.00 2.17
423 424 5.975693 TCAAATTTTGGTAGCGGATTTCT 57.024 34.783 9.18 0.00 0.00 2.52
424 425 5.708948 TCAAATTTTGGTAGCGGATTTCTG 58.291 37.500 9.18 0.00 0.00 3.02
425 426 5.475220 TCAAATTTTGGTAGCGGATTTCTGA 59.525 36.000 9.18 0.00 0.00 3.27
426 427 5.975693 AATTTTGGTAGCGGATTTCTGAA 57.024 34.783 0.00 0.00 0.00 3.02
427 428 6.530019 AATTTTGGTAGCGGATTTCTGAAT 57.470 33.333 0.00 0.00 0.00 2.57
428 429 5.560966 TTTTGGTAGCGGATTTCTGAATC 57.439 39.130 0.00 0.00 40.78 2.52
429 430 2.821546 TGGTAGCGGATTTCTGAATCG 58.178 47.619 0.00 0.00 42.12 3.34
430 431 2.135933 GGTAGCGGATTTCTGAATCGG 58.864 52.381 0.00 3.26 42.12 4.18
431 432 2.223971 GGTAGCGGATTTCTGAATCGGA 60.224 50.000 9.87 0.00 42.19 4.55
432 433 2.918712 AGCGGATTTCTGAATCGGAT 57.081 45.000 9.87 2.23 42.19 4.18
433 434 3.199880 AGCGGATTTCTGAATCGGATT 57.800 42.857 2.19 2.19 42.19 3.01
434 435 3.134458 AGCGGATTTCTGAATCGGATTC 58.866 45.455 21.08 21.08 42.19 2.52
435 436 3.134458 GCGGATTTCTGAATCGGATTCT 58.866 45.455 26.15 10.06 42.19 2.40
436 437 3.059325 GCGGATTTCTGAATCGGATTCTG 60.059 47.826 26.15 24.92 42.19 3.02
437 438 3.059325 CGGATTTCTGAATCGGATTCTGC 60.059 47.826 26.15 13.23 42.19 4.26
438 439 4.133078 GGATTTCTGAATCGGATTCTGCT 58.867 43.478 26.15 15.55 42.12 4.24
439 440 4.024218 GGATTTCTGAATCGGATTCTGCTG 60.024 45.833 26.15 15.68 42.12 4.41
440 441 2.609427 TCTGAATCGGATTCTGCTGG 57.391 50.000 26.15 13.75 39.96 4.85
441 442 1.139654 TCTGAATCGGATTCTGCTGGG 59.860 52.381 26.15 12.41 39.96 4.45
442 443 0.911769 TGAATCGGATTCTGCTGGGT 59.088 50.000 26.15 0.00 39.96 4.51
443 444 1.281867 TGAATCGGATTCTGCTGGGTT 59.718 47.619 26.15 0.00 39.96 4.11
444 445 1.943340 GAATCGGATTCTGCTGGGTTC 59.057 52.381 20.70 0.00 36.37 3.62
445 446 0.179073 ATCGGATTCTGCTGGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
446 447 2.464459 CGGATTCTGCTGGGTTCGC 61.464 63.158 0.00 0.00 0.00 4.70
447 448 2.115291 GGATTCTGCTGGGTTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
457 458 4.167597 GGTTCGCCCTTTGGTTCA 57.832 55.556 0.00 0.00 0.00 3.18
458 459 1.956802 GGTTCGCCCTTTGGTTCAG 59.043 57.895 0.00 0.00 0.00 3.02
459 460 0.536460 GGTTCGCCCTTTGGTTCAGA 60.536 55.000 0.00 0.00 0.00 3.27
460 461 1.534729 GTTCGCCCTTTGGTTCAGAT 58.465 50.000 0.00 0.00 0.00 2.90
461 462 1.886542 GTTCGCCCTTTGGTTCAGATT 59.113 47.619 0.00 0.00 0.00 2.40
462 463 1.821216 TCGCCCTTTGGTTCAGATTC 58.179 50.000 0.00 0.00 0.00 2.52
463 464 1.351017 TCGCCCTTTGGTTCAGATTCT 59.649 47.619 0.00 0.00 0.00 2.40
464 465 1.470098 CGCCCTTTGGTTCAGATTCTG 59.530 52.381 7.38 7.38 0.00 3.02
465 466 1.203287 GCCCTTTGGTTCAGATTCTGC 59.797 52.381 8.89 0.00 0.00 4.26
466 467 1.821136 CCCTTTGGTTCAGATTCTGCC 59.179 52.381 8.89 6.13 0.00 4.85
467 468 1.470098 CCTTTGGTTCAGATTCTGCCG 59.530 52.381 8.89 0.00 0.00 5.69
468 469 0.881118 TTTGGTTCAGATTCTGCCGC 59.119 50.000 8.89 1.77 0.00 6.53
469 470 0.250684 TTGGTTCAGATTCTGCCGCA 60.251 50.000 8.89 0.00 0.00 5.69
470 471 0.035152 TGGTTCAGATTCTGCCGCAT 60.035 50.000 8.89 0.00 0.00 4.73
471 472 0.379669 GGTTCAGATTCTGCCGCATG 59.620 55.000 8.89 0.00 0.00 4.06
472 473 0.379669 GTTCAGATTCTGCCGCATGG 59.620 55.000 8.89 0.00 38.77 3.66
484 485 4.704007 GCATGGCAGCGAAATCAG 57.296 55.556 0.00 0.00 0.00 2.90
485 486 1.805254 GCATGGCAGCGAAATCAGT 59.195 52.632 0.00 0.00 0.00 3.41
486 487 0.248377 GCATGGCAGCGAAATCAGTC 60.248 55.000 0.00 0.00 0.00 3.51
487 488 0.027194 CATGGCAGCGAAATCAGTCG 59.973 55.000 0.00 0.00 43.98 4.18
488 489 0.108186 ATGGCAGCGAAATCAGTCGA 60.108 50.000 0.00 0.00 43.86 4.20
489 490 0.108186 TGGCAGCGAAATCAGTCGAT 60.108 50.000 0.00 0.00 43.86 3.59
490 491 1.136110 TGGCAGCGAAATCAGTCGATA 59.864 47.619 0.00 0.00 43.86 2.92
491 492 2.201732 GGCAGCGAAATCAGTCGATAA 58.798 47.619 0.00 0.00 43.86 1.75
492 493 2.607635 GGCAGCGAAATCAGTCGATAAA 59.392 45.455 0.00 0.00 43.86 1.40
493 494 3.063452 GGCAGCGAAATCAGTCGATAAAA 59.937 43.478 0.00 0.00 43.86 1.52
494 495 4.266945 GCAGCGAAATCAGTCGATAAAAG 58.733 43.478 0.00 0.00 43.86 2.27
495 496 4.266945 CAGCGAAATCAGTCGATAAAAGC 58.733 43.478 0.00 0.00 43.86 3.51
496 497 4.033358 CAGCGAAATCAGTCGATAAAAGCT 59.967 41.667 0.00 0.00 43.86 3.74
497 498 4.033358 AGCGAAATCAGTCGATAAAAGCTG 59.967 41.667 0.00 0.00 43.86 4.24
498 499 4.032900 GCGAAATCAGTCGATAAAAGCTGA 59.967 41.667 3.93 3.93 43.86 4.26
499 500 5.445939 GCGAAATCAGTCGATAAAAGCTGAA 60.446 40.000 5.40 0.00 43.86 3.02
500 501 5.954349 CGAAATCAGTCGATAAAAGCTGAAC 59.046 40.000 5.40 1.30 43.86 3.18
501 502 5.803020 AATCAGTCGATAAAAGCTGAACC 57.197 39.130 5.40 0.00 40.71 3.62
502 503 4.265904 TCAGTCGATAAAAGCTGAACCA 57.734 40.909 0.00 0.00 35.36 3.67
503 504 4.637276 TCAGTCGATAAAAGCTGAACCAA 58.363 39.130 0.00 0.00 35.36 3.67
504 505 5.060506 TCAGTCGATAAAAGCTGAACCAAA 58.939 37.500 0.00 0.00 35.36 3.28
505 506 5.049680 TCAGTCGATAAAAGCTGAACCAAAC 60.050 40.000 0.00 0.00 35.36 2.93
506 507 4.819630 AGTCGATAAAAGCTGAACCAAACA 59.180 37.500 0.00 0.00 0.00 2.83
507 508 5.049405 AGTCGATAAAAGCTGAACCAAACAG 60.049 40.000 0.00 0.00 38.27 3.16
508 509 5.049680 GTCGATAAAAGCTGAACCAAACAGA 60.050 40.000 0.00 0.00 37.54 3.41
509 510 5.179368 TCGATAAAAGCTGAACCAAACAGAG 59.821 40.000 0.00 0.00 37.54 3.35
510 511 3.443099 AAAAGCTGAACCAAACAGAGC 57.557 42.857 0.00 0.00 37.54 4.09
544 545 2.816087 GTGTGATGGTGTCAATCTTGCT 59.184 45.455 0.00 0.00 38.90 3.91
568 569 5.131475 TCTTGGTAAAGTGGGTTTGTCTAGT 59.869 40.000 0.00 0.00 34.78 2.57
569 570 4.964593 TGGTAAAGTGGGTTTGTCTAGTC 58.035 43.478 0.00 0.00 0.00 2.59
570 571 4.657039 TGGTAAAGTGGGTTTGTCTAGTCT 59.343 41.667 0.00 0.00 0.00 3.24
572 573 6.014840 TGGTAAAGTGGGTTTGTCTAGTCTAG 60.015 42.308 0.00 0.00 0.00 2.43
575 576 5.923733 AGTGGGTTTGTCTAGTCTAGATG 57.076 43.478 12.74 0.00 37.13 2.90
579 585 3.707102 GGTTTGTCTAGTCTAGATGGCCT 59.293 47.826 12.74 0.00 37.13 5.19
581 587 5.338463 GGTTTGTCTAGTCTAGATGGCCTTT 60.338 44.000 12.74 0.00 37.13 3.11
594 600 6.736110 AGATGGCCTTTATTATTGCACATT 57.264 33.333 3.32 0.00 0.00 2.71
600 606 7.763528 TGGCCTTTATTATTGCACATTTAAGTG 59.236 33.333 3.32 0.00 42.37 3.16
601 607 7.978975 GGCCTTTATTATTGCACATTTAAGTGA 59.021 33.333 4.81 0.00 42.05 3.41
619 625 6.715347 AAGTGACTTGGTCAAGCTTAAAAT 57.285 33.333 10.31 0.00 44.49 1.82
645 670 3.471495 AAAAATCACACGAATCTCCGC 57.529 42.857 0.00 0.00 0.00 5.54
662 687 4.923281 TCTCCGCGTAATATCAATGACATG 59.077 41.667 4.92 0.00 0.00 3.21
663 688 3.993736 TCCGCGTAATATCAATGACATGG 59.006 43.478 4.92 0.00 0.00 3.66
664 689 3.993736 CCGCGTAATATCAATGACATGGA 59.006 43.478 4.92 0.00 0.00 3.41
738 763 8.148999 ACTATCCGGATTTTCTTACATCTAACC 58.851 37.037 24.71 0.00 0.00 2.85
739 764 5.353938 TCCGGATTTTCTTACATCTAACCG 58.646 41.667 0.00 0.00 37.02 4.44
740 765 5.105228 TCCGGATTTTCTTACATCTAACCGT 60.105 40.000 0.00 0.00 35.79 4.83
742 767 5.006358 CGGATTTTCTTACATCTAACCGTGG 59.994 44.000 0.00 0.00 33.44 4.94
756 781 1.151668 CCGTGGTCTGCTTTTCTCAG 58.848 55.000 0.00 0.00 0.00 3.35
762 787 3.258228 GGTCTGCTTTTCTCAGCTAGAC 58.742 50.000 12.82 12.82 41.87 2.59
771 796 6.255453 GCTTTTCTCAGCTAGACATGACTTAG 59.745 42.308 2.34 1.26 36.79 2.18
772 797 7.468141 TTTTCTCAGCTAGACATGACTTAGA 57.532 36.000 2.34 0.00 32.51 2.10
784 821 7.172342 AGACATGACTTAGACTCAGACTACTT 58.828 38.462 0.00 0.00 0.00 2.24
863 900 6.990341 TGTGACGTCAGCTACTATTACTAA 57.010 37.500 20.73 0.00 0.00 2.24
867 904 6.820152 TGACGTCAGCTACTATTACTAAGTCA 59.180 38.462 15.76 0.00 0.00 3.41
871 908 7.041303 CGTCAGCTACTATTACTAAGTCATCCA 60.041 40.741 0.00 0.00 0.00 3.41
959 996 5.411781 CACTAGTGTGATCTTTGGGTCTAC 58.588 45.833 15.06 0.00 46.55 2.59
960 997 5.047306 CACTAGTGTGATCTTTGGGTCTACA 60.047 44.000 15.06 0.00 46.55 2.74
962 999 3.646162 AGTGTGATCTTTGGGTCTACACA 59.354 43.478 0.00 0.00 39.36 3.72
963 1000 4.102524 AGTGTGATCTTTGGGTCTACACAA 59.897 41.667 0.00 0.00 39.36 3.33
964 1001 4.819630 GTGTGATCTTTGGGTCTACACAAA 59.180 41.667 9.97 9.97 45.99 2.83
1022 1059 3.706373 GCAGACGGCCTCCTCCAA 61.706 66.667 0.00 0.00 36.11 3.53
1023 1060 2.266055 CAGACGGCCTCCTCCAAC 59.734 66.667 0.00 0.00 0.00 3.77
1024 1061 3.382832 AGACGGCCTCCTCCAACG 61.383 66.667 0.00 0.00 0.00 4.10
1027 1064 2.280823 GACGGCCTCCTCCAACGTAG 62.281 65.000 0.00 0.00 37.96 3.51
1028 1065 2.050350 CGGCCTCCTCCAACGTAGA 61.050 63.158 0.00 0.00 0.00 2.59
1109 1173 2.027745 AGAGGCACAATATCCTATGCGG 60.028 50.000 0.00 0.00 39.02 5.69
1110 1174 1.699634 AGGCACAATATCCTATGCGGT 59.300 47.619 0.00 0.00 39.02 5.68
1111 1175 1.806542 GGCACAATATCCTATGCGGTG 59.193 52.381 0.00 0.00 39.02 4.94
1112 1176 1.806542 GCACAATATCCTATGCGGTGG 59.193 52.381 0.00 0.00 0.00 4.61
1113 1177 2.810400 GCACAATATCCTATGCGGTGGT 60.810 50.000 0.00 0.00 0.00 4.16
1114 1178 2.807967 CACAATATCCTATGCGGTGGTG 59.192 50.000 0.00 0.00 0.00 4.17
1260 1324 3.735720 TGGATCCACCACATGATGAAA 57.264 42.857 11.44 0.00 44.64 2.69
1289 1353 2.335011 CGATATCGCCTGCGTCCA 59.665 61.111 12.95 0.00 40.74 4.02
1632 1706 0.396435 TGGACGTCAGGCATGTTTCT 59.604 50.000 18.91 0.00 0.00 2.52
1644 1718 3.600388 GCATGTTTCTAGGCACTACTGT 58.400 45.455 0.00 0.00 41.75 3.55
1764 1838 1.002134 CGCCATGTTCACCTCCCTT 60.002 57.895 0.00 0.00 0.00 3.95
2026 2100 0.392998 CAAAGCGCAGTCCCAGGTAT 60.393 55.000 11.47 0.00 0.00 2.73
2027 2101 1.134521 CAAAGCGCAGTCCCAGGTATA 60.135 52.381 11.47 0.00 0.00 1.47
2028 2102 0.753262 AAGCGCAGTCCCAGGTATAG 59.247 55.000 11.47 0.00 0.00 1.31
2029 2103 1.301009 GCGCAGTCCCAGGTATAGC 60.301 63.158 0.30 0.00 0.00 2.97
2030 2104 1.749334 GCGCAGTCCCAGGTATAGCT 61.749 60.000 0.30 0.00 0.00 3.32
2031 2105 1.617322 CGCAGTCCCAGGTATAGCTA 58.383 55.000 3.68 0.00 0.00 3.32
2032 2106 1.542030 CGCAGTCCCAGGTATAGCTAG 59.458 57.143 3.68 0.00 0.00 3.42
2033 2107 2.599677 GCAGTCCCAGGTATAGCTAGT 58.400 52.381 3.68 0.00 0.00 2.57
2034 2108 2.966516 GCAGTCCCAGGTATAGCTAGTT 59.033 50.000 3.68 0.00 0.00 2.24
2035 2109 3.006003 GCAGTCCCAGGTATAGCTAGTTC 59.994 52.174 3.68 0.00 0.00 3.01
2036 2110 3.574826 CAGTCCCAGGTATAGCTAGTTCC 59.425 52.174 3.68 1.65 0.00 3.62
2037 2111 3.206866 AGTCCCAGGTATAGCTAGTTCCA 59.793 47.826 3.68 0.00 0.00 3.53
2038 2112 4.140663 AGTCCCAGGTATAGCTAGTTCCAT 60.141 45.833 3.68 0.00 0.00 3.41
2039 2113 4.221041 GTCCCAGGTATAGCTAGTTCCATC 59.779 50.000 3.68 0.00 0.00 3.51
2040 2114 3.193691 CCCAGGTATAGCTAGTTCCATCG 59.806 52.174 3.68 0.00 0.00 3.84
2041 2115 4.079970 CCAGGTATAGCTAGTTCCATCGA 58.920 47.826 3.68 0.00 0.00 3.59
2042 2116 4.082679 CCAGGTATAGCTAGTTCCATCGAC 60.083 50.000 3.68 0.00 0.00 4.20
2043 2117 3.752222 AGGTATAGCTAGTTCCATCGACG 59.248 47.826 1.70 0.00 0.00 5.12
2044 2118 3.119919 GGTATAGCTAGTTCCATCGACGG 60.120 52.174 0.00 0.00 0.00 4.79
2045 2119 2.048444 TAGCTAGTTCCATCGACGGT 57.952 50.000 0.00 0.00 0.00 4.83
2046 2120 0.739561 AGCTAGTTCCATCGACGGTC 59.260 55.000 0.00 0.00 0.00 4.79
2076 2150 8.344446 ACCACTTTTACAACAAGAAGTTACTT 57.656 30.769 0.00 0.00 38.74 2.24
2077 2151 9.452287 ACCACTTTTACAACAAGAAGTTACTTA 57.548 29.630 0.00 0.00 38.74 2.24
2124 2203 6.016777 GTCAAACATTCCCAAGCATCCTATAG 60.017 42.308 0.00 0.00 0.00 1.31
2125 2204 4.647564 ACATTCCCAAGCATCCTATAGG 57.352 45.455 13.07 13.07 0.00 2.57
2137 2216 3.637821 TCCTATAGGATGCAAGGACCT 57.362 47.619 18.00 4.70 39.78 3.85
2138 2217 3.511477 TCCTATAGGATGCAAGGACCTC 58.489 50.000 18.00 0.00 39.78 3.85
2139 2218 2.569404 CCTATAGGATGCAAGGACCTCC 59.431 54.545 14.11 1.39 37.39 4.30
2140 2219 1.439543 ATAGGATGCAAGGACCTCCC 58.560 55.000 0.00 0.00 36.42 4.30
2141 2220 1.048724 TAGGATGCAAGGACCTCCCG 61.049 60.000 0.00 0.00 40.87 5.14
2142 2221 2.190578 GATGCAAGGACCTCCCGG 59.809 66.667 0.00 0.00 40.87 5.73
2143 2222 2.285368 ATGCAAGGACCTCCCGGA 60.285 61.111 0.73 0.00 40.87 5.14
2144 2223 2.317149 GATGCAAGGACCTCCCGGAG 62.317 65.000 0.73 7.56 40.87 4.63
2145 2224 2.683933 GCAAGGACCTCCCGGAGA 60.684 66.667 16.69 0.00 40.87 3.71
2146 2225 2.291043 GCAAGGACCTCCCGGAGAA 61.291 63.158 16.69 0.00 40.87 2.87
2147 2226 1.838073 GCAAGGACCTCCCGGAGAAA 61.838 60.000 16.69 0.00 40.87 2.52
2148 2227 0.912486 CAAGGACCTCCCGGAGAAAT 59.088 55.000 16.69 0.62 40.87 2.17
2149 2228 2.116238 CAAGGACCTCCCGGAGAAATA 58.884 52.381 16.69 0.00 40.87 1.40
2150 2229 1.790818 AGGACCTCCCGGAGAAATAC 58.209 55.000 16.69 1.84 40.87 1.89
2151 2230 1.291335 AGGACCTCCCGGAGAAATACT 59.709 52.381 16.69 4.23 40.87 2.12
2152 2231 2.117051 GGACCTCCCGGAGAAATACTT 58.883 52.381 16.69 0.00 0.00 2.24
2153 2232 2.504585 GGACCTCCCGGAGAAATACTTT 59.495 50.000 16.69 0.00 0.00 2.66
2154 2233 3.054582 GGACCTCCCGGAGAAATACTTTT 60.055 47.826 16.69 0.00 0.00 2.27
2155 2234 4.190001 GACCTCCCGGAGAAATACTTTTC 58.810 47.826 16.69 0.00 41.34 2.29
2211 2291 2.751036 CCGTGCATGCATCCACCA 60.751 61.111 25.64 0.00 0.00 4.17
2213 2293 2.042259 CGTGCATGCATCCACCACT 61.042 57.895 25.64 0.00 0.00 4.00
2321 2401 8.748412 TCACCAAGTTTCATCCAAATAAATAGG 58.252 33.333 0.00 0.00 0.00 2.57
2771 2864 1.479323 CAAAGCATGGGATGGTGAAGG 59.521 52.381 0.00 0.00 41.46 3.46
2975 3075 2.095314 TGTGCAGGACATAACATTTGCG 60.095 45.455 0.00 0.00 34.44 4.85
3104 3204 3.699894 CGGCTGGTGCAGGAGTCT 61.700 66.667 0.00 0.00 41.91 3.24
3191 3291 0.667993 CCTTCAACGTGCCACATGTT 59.332 50.000 0.00 0.00 43.30 2.71
3209 3309 1.748329 TTGCGCTCTCTGACACCACT 61.748 55.000 9.73 0.00 0.00 4.00
3278 3477 2.793317 TAGGGCTCGGTCGAAACCCT 62.793 60.000 26.38 26.38 46.52 4.34
3443 3642 0.833949 TTGGGACGGCTATGTGCATA 59.166 50.000 0.00 0.00 45.15 3.14
3453 3652 3.817084 GGCTATGTGCATAATGCTCTTCA 59.183 43.478 9.94 0.00 45.31 3.02
3467 3666 2.485124 GCTCTTCAGCAGGCTCATACAT 60.485 50.000 0.00 0.00 46.06 2.29
3476 3675 2.092753 CAGGCTCATACATGGGTTCACT 60.093 50.000 0.00 0.00 0.00 3.41
3549 3748 0.992802 CGTCTTTCTAGCCAAGTCGC 59.007 55.000 7.72 0.00 0.00 5.19
3563 3762 1.448540 GTCGCTGGTGCTACATGCT 60.449 57.895 0.00 0.00 43.37 3.79
3592 3791 1.003839 TGCCAGCAAACCTCTACCG 60.004 57.895 0.00 0.00 0.00 4.02
3619 3818 6.490040 GCCACCACCATCTAATATATGTTTGT 59.510 38.462 0.00 0.00 0.00 2.83
3674 3873 0.733909 TGATCACAACGCGAGCTCAG 60.734 55.000 15.93 9.60 0.00 3.35
3802 4001 6.037610 GTCCCTTCTATACTTGCACAAATCTG 59.962 42.308 0.00 0.00 0.00 2.90
3842 4041 3.713826 TTTTGGAGCCTTAGAATCCGT 57.286 42.857 0.00 0.00 35.78 4.69
3960 4159 5.835280 CCTTCAAGCCCCTCAAATGTAATAT 59.165 40.000 0.00 0.00 0.00 1.28
3986 4185 1.425066 TGGATCACAAAGTTCCAGCCT 59.575 47.619 0.00 0.00 40.39 4.58
3999 4198 1.216444 CAGCCTTCGCTAGAGTGCA 59.784 57.895 0.00 0.00 46.25 4.57
4028 4227 0.465705 TGCCTATCCCAAGCTTCGAG 59.534 55.000 0.00 0.00 0.00 4.04
4029 4228 0.466124 GCCTATCCCAAGCTTCGAGT 59.534 55.000 0.00 0.00 0.00 4.18
4039 4238 3.303395 CCAAGCTTCGAGTCTTTTGTGAC 60.303 47.826 0.00 0.00 37.23 3.67
4081 4286 1.176527 AACCAATGATCTGGCCAACG 58.823 50.000 7.01 0.00 40.45 4.10
4119 4324 2.351706 TAACCCACTTGCCGAGTTTT 57.648 45.000 0.00 0.00 36.10 2.43
4188 4394 8.014070 TGGAGTCCTATAAAACATCGAATGTA 57.986 34.615 11.33 0.00 44.07 2.29
4271 4477 6.640499 TGGTTGATTTTAGAATTTGCGTGAAG 59.360 34.615 0.00 0.00 0.00 3.02
4289 4495 2.306341 AGCTGAGGATGTGATTGTCG 57.694 50.000 0.00 0.00 0.00 4.35
4336 4542 7.875327 GAGGTAGATCCCTCTCATAGATTAC 57.125 44.000 10.01 0.00 46.34 1.89
4338 4544 7.770662 AGGTAGATCCCTCTCATAGATTACAA 58.229 38.462 0.00 0.00 36.75 2.41
4343 4549 8.674173 AGATCCCTCTCATAGATTACAACTCTA 58.326 37.037 0.00 0.00 0.00 2.43
4354 4560 6.473758 AGATTACAACTCTAGGGACAAAACC 58.526 40.000 0.00 0.00 0.00 3.27
4362 4568 1.602605 GGGACAAAACCCTCACCCG 60.603 63.158 0.00 0.00 45.90 5.28
4367 4573 3.546714 AAAACCCTCACCCGCTCCG 62.547 63.158 0.00 0.00 0.00 4.63
4382 4588 2.287668 CGCTCCGATGGGTTAACTCTAG 60.288 54.545 7.09 0.00 33.83 2.43
4447 4653 5.947228 ACCACATTATTCTTGTGTGACTG 57.053 39.130 6.32 0.00 44.48 3.51
4450 4656 5.473162 CCACATTATTCTTGTGTGACTGGAA 59.527 40.000 6.32 0.00 44.48 3.53
4451 4657 6.151648 CCACATTATTCTTGTGTGACTGGAAT 59.848 38.462 6.32 0.00 44.48 3.01
4452 4658 7.309377 CCACATTATTCTTGTGTGACTGGAATT 60.309 37.037 6.32 0.00 44.48 2.17
4453 4659 7.539710 CACATTATTCTTGTGTGACTGGAATTG 59.460 37.037 0.00 0.00 44.48 2.32
4454 4660 3.988379 TTCTTGTGTGACTGGAATTGC 57.012 42.857 0.00 0.00 0.00 3.56
4455 4661 3.213206 TCTTGTGTGACTGGAATTGCT 57.787 42.857 0.00 0.00 0.00 3.91
4456 4662 4.350368 TCTTGTGTGACTGGAATTGCTA 57.650 40.909 0.00 0.00 0.00 3.49
4457 4663 4.318332 TCTTGTGTGACTGGAATTGCTAG 58.682 43.478 0.00 0.00 0.00 3.42
4482 4688 7.991460 AGGTTGCTAGGTTTATATAGGTTGTTC 59.009 37.037 0.00 0.00 0.00 3.18
4506 4712 4.819769 GCAAGAAATTGCATTAGGGAACA 58.180 39.130 8.03 0.00 46.60 3.18
4520 4726 7.379529 GCATTAGGGAACATTTACATTTCGATG 59.620 37.037 0.00 0.00 0.00 3.84
4525 4731 8.786898 AGGGAACATTTACATTTCGATGATATG 58.213 33.333 0.00 0.00 0.00 1.78
4583 4789 8.851145 ACTTTTCTTTTCATCCTCCTTTAGTTC 58.149 33.333 0.00 0.00 0.00 3.01
4596 4802 6.433847 TCCTTTAGTTCTCACCTTTGATCA 57.566 37.500 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.819666 TGGCCGTGTGTATGCAACAA 60.820 50.000 0.00 0.00 40.63 2.83
9 10 1.227973 TGGCCGTGTGTATGCAACA 60.228 52.632 0.00 0.00 35.06 3.33
15 16 2.489938 ATGTTTCTGGCCGTGTGTAT 57.510 45.000 0.00 0.00 0.00 2.29
19 20 1.883926 GGTAAATGTTTCTGGCCGTGT 59.116 47.619 0.00 0.00 0.00 4.49
26 27 2.093783 GTCGGCGAGGTAAATGTTTCTG 59.906 50.000 11.20 0.00 0.00 3.02
33 34 0.107848 CTTGGGTCGGCGAGGTAAAT 60.108 55.000 11.20 0.00 0.00 1.40
34 35 1.294138 CTTGGGTCGGCGAGGTAAA 59.706 57.895 11.20 1.70 0.00 2.01
36 37 3.072468 CCTTGGGTCGGCGAGGTA 61.072 66.667 11.20 0.00 0.00 3.08
46 47 2.203538 CTTGCCAGCACCTTGGGT 60.204 61.111 0.00 0.00 38.72 4.51
49 50 1.542492 AGATTCTTGCCAGCACCTTG 58.458 50.000 0.00 0.00 0.00 3.61
51 52 4.778213 TTATAGATTCTTGCCAGCACCT 57.222 40.909 0.00 0.00 0.00 4.00
53 54 6.799512 ACAATTTATAGATTCTTGCCAGCAC 58.200 36.000 0.00 0.00 0.00 4.40
54 55 7.259882 CAACAATTTATAGATTCTTGCCAGCA 58.740 34.615 0.00 0.00 0.00 4.41
59 60 7.585573 CGAGAGCAACAATTTATAGATTCTTGC 59.414 37.037 16.37 16.37 39.61 4.01
97 98 7.810766 ATTTGAGTAATAATTTGCGTTGGTG 57.189 32.000 0.00 0.00 0.00 4.17
204 205 1.165270 CGAACCAAACAGGGCCTTAG 58.835 55.000 1.32 0.00 43.89 2.18
205 206 0.250989 CCGAACCAAACAGGGCCTTA 60.251 55.000 1.32 0.00 43.89 2.69
206 207 1.530655 CCGAACCAAACAGGGCCTT 60.531 57.895 1.32 0.00 43.89 4.35
207 208 2.115266 CCGAACCAAACAGGGCCT 59.885 61.111 0.00 0.00 43.89 5.19
208 209 3.680786 GCCGAACCAAACAGGGCC 61.681 66.667 0.00 0.00 43.89 5.80
209 210 2.597510 AGCCGAACCAAACAGGGC 60.598 61.111 0.00 0.00 43.89 5.19
210 211 1.528309 ACAGCCGAACCAAACAGGG 60.528 57.895 0.00 0.00 43.89 4.45
211 212 1.654220 CACAGCCGAACCAAACAGG 59.346 57.895 0.00 0.00 45.67 4.00
212 213 0.817634 TCCACAGCCGAACCAAACAG 60.818 55.000 0.00 0.00 0.00 3.16
213 214 0.179004 ATCCACAGCCGAACCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
214 215 0.958822 AATCCACAGCCGAACCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
215 216 1.611491 GAAATCCACAGCCGAACCAAA 59.389 47.619 0.00 0.00 0.00 3.28
216 217 1.202879 AGAAATCCACAGCCGAACCAA 60.203 47.619 0.00 0.00 0.00 3.67
217 218 0.400213 AGAAATCCACAGCCGAACCA 59.600 50.000 0.00 0.00 0.00 3.67
218 219 2.396590 TAGAAATCCACAGCCGAACC 57.603 50.000 0.00 0.00 0.00 3.62
219 220 4.723248 CTTTTAGAAATCCACAGCCGAAC 58.277 43.478 0.00 0.00 0.00 3.95
220 221 3.190535 GCTTTTAGAAATCCACAGCCGAA 59.809 43.478 0.00 0.00 0.00 4.30
221 222 2.747446 GCTTTTAGAAATCCACAGCCGA 59.253 45.455 0.00 0.00 0.00 5.54
222 223 2.487762 TGCTTTTAGAAATCCACAGCCG 59.512 45.455 0.00 0.00 0.00 5.52
223 224 3.674410 GCTGCTTTTAGAAATCCACAGCC 60.674 47.826 0.00 0.00 42.58 4.85
224 225 3.505836 GCTGCTTTTAGAAATCCACAGC 58.494 45.455 0.00 0.00 42.00 4.40
225 226 4.217118 ACAGCTGCTTTTAGAAATCCACAG 59.783 41.667 15.27 0.00 0.00 3.66
226 227 4.022935 CACAGCTGCTTTTAGAAATCCACA 60.023 41.667 15.27 0.00 0.00 4.17
227 228 4.216257 TCACAGCTGCTTTTAGAAATCCAC 59.784 41.667 15.27 0.00 0.00 4.02
228 229 4.397420 TCACAGCTGCTTTTAGAAATCCA 58.603 39.130 15.27 0.00 0.00 3.41
229 230 5.376854 TTCACAGCTGCTTTTAGAAATCC 57.623 39.130 15.27 0.00 0.00 3.01
230 231 7.698836 TTTTTCACAGCTGCTTTTAGAAATC 57.301 32.000 15.27 0.00 0.00 2.17
231 232 8.146412 AGATTTTTCACAGCTGCTTTTAGAAAT 58.854 29.630 15.27 10.98 0.00 2.17
232 233 7.436080 CAGATTTTTCACAGCTGCTTTTAGAAA 59.564 33.333 15.27 11.50 0.00 2.52
233 234 6.919662 CAGATTTTTCACAGCTGCTTTTAGAA 59.080 34.615 15.27 5.96 0.00 2.10
234 235 6.441274 CAGATTTTTCACAGCTGCTTTTAGA 58.559 36.000 15.27 0.00 0.00 2.10
235 236 5.118203 GCAGATTTTTCACAGCTGCTTTTAG 59.882 40.000 15.27 0.00 46.17 1.85
236 237 4.984161 GCAGATTTTTCACAGCTGCTTTTA 59.016 37.500 15.27 0.00 46.17 1.52
237 238 3.805971 GCAGATTTTTCACAGCTGCTTTT 59.194 39.130 15.27 0.00 46.17 2.27
238 239 3.387397 GCAGATTTTTCACAGCTGCTTT 58.613 40.909 15.27 0.00 46.17 3.51
239 240 3.022607 GCAGATTTTTCACAGCTGCTT 57.977 42.857 15.27 0.00 46.17 3.91
240 241 2.719426 GCAGATTTTTCACAGCTGCT 57.281 45.000 15.27 0.00 46.17 4.24
242 243 4.397103 TCCATAGCAGATTTTTCACAGCTG 59.603 41.667 13.48 13.48 33.83 4.24
243 244 4.592942 TCCATAGCAGATTTTTCACAGCT 58.407 39.130 0.00 0.00 36.20 4.24
244 245 4.970662 TCCATAGCAGATTTTTCACAGC 57.029 40.909 0.00 0.00 0.00 4.40
245 246 7.652909 TGTTTTTCCATAGCAGATTTTTCACAG 59.347 33.333 0.00 0.00 0.00 3.66
246 247 7.495901 TGTTTTTCCATAGCAGATTTTTCACA 58.504 30.769 0.00 0.00 0.00 3.58
247 248 7.359514 GCTGTTTTTCCATAGCAGATTTTTCAC 60.360 37.037 0.00 0.00 36.24 3.18
248 249 6.646240 GCTGTTTTTCCATAGCAGATTTTTCA 59.354 34.615 0.00 0.00 36.24 2.69
249 250 6.870439 AGCTGTTTTTCCATAGCAGATTTTTC 59.130 34.615 0.00 0.00 38.59 2.29
250 251 6.647895 CAGCTGTTTTTCCATAGCAGATTTTT 59.352 34.615 5.25 0.00 38.59 1.94
251 252 6.161381 CAGCTGTTTTTCCATAGCAGATTTT 58.839 36.000 5.25 0.00 38.59 1.82
252 253 5.244626 ACAGCTGTTTTTCCATAGCAGATTT 59.755 36.000 15.25 0.00 38.59 2.17
253 254 4.768968 ACAGCTGTTTTTCCATAGCAGATT 59.231 37.500 15.25 0.00 38.59 2.40
254 255 4.157289 CACAGCTGTTTTTCCATAGCAGAT 59.843 41.667 18.94 0.00 38.59 2.90
255 256 3.503363 CACAGCTGTTTTTCCATAGCAGA 59.497 43.478 18.94 0.00 38.59 4.26
256 257 3.366679 CCACAGCTGTTTTTCCATAGCAG 60.367 47.826 18.94 0.34 38.59 4.24
257 258 2.557924 CCACAGCTGTTTTTCCATAGCA 59.442 45.455 18.94 0.00 38.59 3.49
258 259 2.819608 TCCACAGCTGTTTTTCCATAGC 59.180 45.455 18.94 0.00 36.45 2.97
259 260 5.452078 TTTCCACAGCTGTTTTTCCATAG 57.548 39.130 18.94 1.97 0.00 2.23
260 261 5.860941 TTTTCCACAGCTGTTTTTCCATA 57.139 34.783 18.94 0.00 0.00 2.74
261 262 4.751767 TTTTCCACAGCTGTTTTTCCAT 57.248 36.364 18.94 0.00 0.00 3.41
262 263 4.405358 AGATTTTCCACAGCTGTTTTTCCA 59.595 37.500 18.94 0.00 0.00 3.53
263 264 4.746611 CAGATTTTCCACAGCTGTTTTTCC 59.253 41.667 18.94 3.55 0.00 3.13
264 265 5.591099 TCAGATTTTCCACAGCTGTTTTTC 58.409 37.500 18.94 8.57 0.00 2.29
265 266 5.596836 TCAGATTTTCCACAGCTGTTTTT 57.403 34.783 18.94 0.00 0.00 1.94
266 267 5.069516 ACATCAGATTTTCCACAGCTGTTTT 59.930 36.000 18.94 0.00 0.00 2.43
267 268 4.586001 ACATCAGATTTTCCACAGCTGTTT 59.414 37.500 18.94 0.00 0.00 2.83
268 269 4.022589 CACATCAGATTTTCCACAGCTGTT 60.023 41.667 18.94 0.15 0.00 3.16
269 270 3.504906 CACATCAGATTTTCCACAGCTGT 59.495 43.478 15.25 15.25 0.00 4.40
270 271 3.754850 TCACATCAGATTTTCCACAGCTG 59.245 43.478 13.48 13.48 0.00 4.24
271 272 4.025040 TCACATCAGATTTTCCACAGCT 57.975 40.909 0.00 0.00 0.00 4.24
272 273 4.771590 TTCACATCAGATTTTCCACAGC 57.228 40.909 0.00 0.00 0.00 4.40
273 274 7.428020 TCTTTTTCACATCAGATTTTCCACAG 58.572 34.615 0.00 0.00 0.00 3.66
274 275 7.345422 TCTTTTTCACATCAGATTTTCCACA 57.655 32.000 0.00 0.00 0.00 4.17
275 276 7.869429 ACATCTTTTTCACATCAGATTTTCCAC 59.131 33.333 0.00 0.00 0.00 4.02
276 277 7.954835 ACATCTTTTTCACATCAGATTTTCCA 58.045 30.769 0.00 0.00 0.00 3.53
277 278 9.565213 CTACATCTTTTTCACATCAGATTTTCC 57.435 33.333 0.00 0.00 0.00 3.13
278 279 9.565213 CCTACATCTTTTTCACATCAGATTTTC 57.435 33.333 0.00 0.00 0.00 2.29
279 280 9.082313 ACCTACATCTTTTTCACATCAGATTTT 57.918 29.630 0.00 0.00 0.00 1.82
280 281 8.641498 ACCTACATCTTTTTCACATCAGATTT 57.359 30.769 0.00 0.00 0.00 2.17
281 282 8.641498 AACCTACATCTTTTTCACATCAGATT 57.359 30.769 0.00 0.00 0.00 2.40
282 283 9.911788 ATAACCTACATCTTTTTCACATCAGAT 57.088 29.630 0.00 0.00 0.00 2.90
283 284 9.739276 AATAACCTACATCTTTTTCACATCAGA 57.261 29.630 0.00 0.00 0.00 3.27
286 287 9.573133 CCAAATAACCTACATCTTTTTCACATC 57.427 33.333 0.00 0.00 0.00 3.06
287 288 8.034804 GCCAAATAACCTACATCTTTTTCACAT 58.965 33.333 0.00 0.00 0.00 3.21
288 289 7.014711 TGCCAAATAACCTACATCTTTTTCACA 59.985 33.333 0.00 0.00 0.00 3.58
289 290 7.375053 TGCCAAATAACCTACATCTTTTTCAC 58.625 34.615 0.00 0.00 0.00 3.18
290 291 7.531857 TGCCAAATAACCTACATCTTTTTCA 57.468 32.000 0.00 0.00 0.00 2.69
291 292 8.708742 GTTTGCCAAATAACCTACATCTTTTTC 58.291 33.333 0.00 0.00 0.00 2.29
292 293 7.659799 GGTTTGCCAAATAACCTACATCTTTTT 59.340 33.333 0.00 0.00 40.50 1.94
293 294 7.158697 GGTTTGCCAAATAACCTACATCTTTT 58.841 34.615 0.00 0.00 40.50 2.27
294 295 6.268847 TGGTTTGCCAAATAACCTACATCTTT 59.731 34.615 0.00 0.00 43.36 2.52
295 296 5.777732 TGGTTTGCCAAATAACCTACATCTT 59.222 36.000 0.00 0.00 43.36 2.40
296 297 5.329399 TGGTTTGCCAAATAACCTACATCT 58.671 37.500 0.00 0.00 43.36 2.90
297 298 5.650543 CTGGTTTGCCAAATAACCTACATC 58.349 41.667 0.00 0.00 45.51 3.06
298 299 4.081697 GCTGGTTTGCCAAATAACCTACAT 60.082 41.667 0.00 0.00 45.51 2.29
299 300 3.257127 GCTGGTTTGCCAAATAACCTACA 59.743 43.478 0.00 0.00 45.51 2.74
300 301 3.509967 AGCTGGTTTGCCAAATAACCTAC 59.490 43.478 0.00 0.00 45.51 3.18
301 302 3.509575 CAGCTGGTTTGCCAAATAACCTA 59.490 43.478 5.57 0.00 45.51 3.08
302 303 2.299867 CAGCTGGTTTGCCAAATAACCT 59.700 45.455 5.57 0.00 45.51 3.50
303 304 2.298729 TCAGCTGGTTTGCCAAATAACC 59.701 45.455 15.13 0.00 45.51 2.85
304 305 3.658757 TCAGCTGGTTTGCCAAATAAC 57.341 42.857 15.13 0.00 45.51 1.89
305 306 4.769488 TGTATCAGCTGGTTTGCCAAATAA 59.231 37.500 15.13 0.00 45.51 1.40
306 307 4.339748 TGTATCAGCTGGTTTGCCAAATA 58.660 39.130 15.13 0.00 45.51 1.40
307 308 3.164268 TGTATCAGCTGGTTTGCCAAAT 58.836 40.909 15.13 0.00 45.51 2.32
308 309 2.557924 CTGTATCAGCTGGTTTGCCAAA 59.442 45.455 15.13 0.00 45.51 3.28
309 310 2.161855 CTGTATCAGCTGGTTTGCCAA 58.838 47.619 15.13 0.00 45.51 4.52
310 311 1.825090 CTGTATCAGCTGGTTTGCCA 58.175 50.000 15.13 1.11 43.73 4.92
321 322 6.309737 GCCAAAATCTGAAAAAGCTGTATCAG 59.690 38.462 13.84 13.84 40.46 2.90
322 323 6.158598 GCCAAAATCTGAAAAAGCTGTATCA 58.841 36.000 0.00 0.00 0.00 2.15
323 324 5.578336 GGCCAAAATCTGAAAAAGCTGTATC 59.422 40.000 0.00 0.00 0.00 2.24
324 325 5.482006 GGCCAAAATCTGAAAAAGCTGTAT 58.518 37.500 0.00 0.00 0.00 2.29
325 326 4.262420 GGGCCAAAATCTGAAAAAGCTGTA 60.262 41.667 4.39 0.00 0.00 2.74
326 327 3.494924 GGGCCAAAATCTGAAAAAGCTGT 60.495 43.478 4.39 0.00 0.00 4.40
327 328 3.069289 GGGCCAAAATCTGAAAAAGCTG 58.931 45.455 4.39 0.00 0.00 4.24
328 329 2.705127 TGGGCCAAAATCTGAAAAAGCT 59.295 40.909 2.13 0.00 0.00 3.74
329 330 2.807967 GTGGGCCAAAATCTGAAAAAGC 59.192 45.455 8.40 0.00 0.00 3.51
330 331 4.060205 CTGTGGGCCAAAATCTGAAAAAG 58.940 43.478 8.40 0.00 0.00 2.27
331 332 3.743899 GCTGTGGGCCAAAATCTGAAAAA 60.744 43.478 8.40 0.00 34.27 1.94
332 333 2.224257 GCTGTGGGCCAAAATCTGAAAA 60.224 45.455 8.40 0.00 34.27 2.29
333 334 1.344114 GCTGTGGGCCAAAATCTGAAA 59.656 47.619 8.40 0.00 34.27 2.69
334 335 0.968405 GCTGTGGGCCAAAATCTGAA 59.032 50.000 8.40 0.00 34.27 3.02
335 336 1.243342 CGCTGTGGGCCAAAATCTGA 61.243 55.000 8.40 0.00 37.74 3.27
336 337 1.213537 CGCTGTGGGCCAAAATCTG 59.786 57.895 8.40 0.40 37.74 2.90
337 338 1.978617 CCGCTGTGGGCCAAAATCT 60.979 57.895 8.40 0.00 37.74 2.40
338 339 1.531739 TTCCGCTGTGGGCCAAAATC 61.532 55.000 8.40 0.00 38.76 2.17
339 340 0.904394 ATTCCGCTGTGGGCCAAAAT 60.904 50.000 8.40 0.00 38.76 1.82
340 341 1.531739 GATTCCGCTGTGGGCCAAAA 61.532 55.000 8.40 0.00 38.76 2.44
341 342 1.976474 GATTCCGCTGTGGGCCAAA 60.976 57.895 8.40 0.00 38.76 3.28
342 343 2.361104 GATTCCGCTGTGGGCCAA 60.361 61.111 8.40 0.00 38.76 4.52
343 344 3.626996 CTGATTCCGCTGTGGGCCA 62.627 63.158 0.00 0.00 38.76 5.36
344 345 2.615227 ATCTGATTCCGCTGTGGGCC 62.615 60.000 7.51 0.00 38.76 5.80
345 346 0.749454 AATCTGATTCCGCTGTGGGC 60.749 55.000 7.51 0.00 38.76 5.36
346 347 1.755179 AAATCTGATTCCGCTGTGGG 58.245 50.000 7.51 0.00 38.76 4.61
347 348 2.159338 CCAAAATCTGATTCCGCTGTGG 60.159 50.000 2.92 0.00 40.09 4.17
348 349 2.159338 CCCAAAATCTGATTCCGCTGTG 60.159 50.000 2.92 0.00 0.00 3.66
349 350 2.094675 CCCAAAATCTGATTCCGCTGT 58.905 47.619 2.92 0.00 0.00 4.40
350 351 2.368439 TCCCAAAATCTGATTCCGCTG 58.632 47.619 2.92 0.03 0.00 5.18
351 352 2.806945 TCCCAAAATCTGATTCCGCT 57.193 45.000 2.92 0.00 0.00 5.52
352 353 2.480244 GCTTCCCAAAATCTGATTCCGC 60.480 50.000 2.92 0.00 0.00 5.54
353 354 2.754552 TGCTTCCCAAAATCTGATTCCG 59.245 45.455 2.92 0.00 0.00 4.30
354 355 4.161001 ACATGCTTCCCAAAATCTGATTCC 59.839 41.667 2.92 0.00 0.00 3.01
355 356 5.334724 ACATGCTTCCCAAAATCTGATTC 57.665 39.130 2.92 0.00 0.00 2.52
356 357 4.161001 GGACATGCTTCCCAAAATCTGATT 59.839 41.667 0.00 0.00 0.00 2.57
357 358 3.703052 GGACATGCTTCCCAAAATCTGAT 59.297 43.478 0.00 0.00 0.00 2.90
358 359 3.091545 GGACATGCTTCCCAAAATCTGA 58.908 45.455 0.00 0.00 0.00 3.27
359 360 3.094572 AGGACATGCTTCCCAAAATCTG 58.905 45.455 0.00 0.00 36.12 2.90
360 361 3.463048 AGGACATGCTTCCCAAAATCT 57.537 42.857 0.00 0.00 36.12 2.40
361 362 4.336713 GTCTAGGACATGCTTCCCAAAATC 59.663 45.833 0.00 0.00 36.12 2.17
362 363 4.018050 AGTCTAGGACATGCTTCCCAAAAT 60.018 41.667 0.00 0.00 36.12 1.82
363 364 3.330701 AGTCTAGGACATGCTTCCCAAAA 59.669 43.478 0.00 0.00 36.12 2.44
364 365 2.912956 AGTCTAGGACATGCTTCCCAAA 59.087 45.455 0.00 0.00 36.12 3.28
365 366 2.237143 CAGTCTAGGACATGCTTCCCAA 59.763 50.000 0.00 0.00 36.12 4.12
366 367 1.833630 CAGTCTAGGACATGCTTCCCA 59.166 52.381 0.00 0.00 36.12 4.37
367 368 1.474143 GCAGTCTAGGACATGCTTCCC 60.474 57.143 0.00 0.00 36.12 3.97
368 369 1.484240 AGCAGTCTAGGACATGCTTCC 59.516 52.381 14.16 0.00 40.90 3.46
369 370 2.977772 AGCAGTCTAGGACATGCTTC 57.022 50.000 14.16 0.00 40.90 3.86
371 372 1.484240 GGAAGCAGTCTAGGACATGCT 59.516 52.381 14.16 14.16 43.30 3.79
372 373 1.804372 CGGAAGCAGTCTAGGACATGC 60.804 57.143 0.00 11.30 37.15 4.06
373 374 2.215907 CGGAAGCAGTCTAGGACATG 57.784 55.000 0.00 0.00 34.60 3.21
386 387 2.754472 ATTTGAACCAAAAGCGGAAGC 58.246 42.857 0.00 0.00 45.90 3.86
387 388 5.500825 CAAAATTTGAACCAAAAGCGGAAG 58.499 37.500 0.00 0.00 36.90 3.46
388 389 4.333926 CCAAAATTTGAACCAAAAGCGGAA 59.666 37.500 7.37 0.00 36.90 4.30
389 390 3.873952 CCAAAATTTGAACCAAAAGCGGA 59.126 39.130 7.37 0.00 36.90 5.54
390 391 3.625313 ACCAAAATTTGAACCAAAAGCGG 59.375 39.130 7.37 0.00 36.90 5.52
391 392 4.873768 ACCAAAATTTGAACCAAAAGCG 57.126 36.364 7.37 0.00 36.90 4.68
392 393 5.558083 CGCTACCAAAATTTGAACCAAAAGC 60.558 40.000 7.37 4.55 36.90 3.51
393 394 5.050431 CCGCTACCAAAATTTGAACCAAAAG 60.050 40.000 7.37 0.00 36.90 2.27
394 395 4.811557 CCGCTACCAAAATTTGAACCAAAA 59.188 37.500 7.37 0.00 36.90 2.44
395 396 4.099573 TCCGCTACCAAAATTTGAACCAAA 59.900 37.500 7.37 0.00 37.75 3.28
396 397 3.637229 TCCGCTACCAAAATTTGAACCAA 59.363 39.130 7.37 0.00 0.00 3.67
397 398 3.223435 TCCGCTACCAAAATTTGAACCA 58.777 40.909 7.37 0.00 0.00 3.67
398 399 3.926821 TCCGCTACCAAAATTTGAACC 57.073 42.857 7.37 0.00 0.00 3.62
399 400 6.089417 CAGAAATCCGCTACCAAAATTTGAAC 59.911 38.462 7.37 0.00 0.00 3.18
400 401 6.015856 TCAGAAATCCGCTACCAAAATTTGAA 60.016 34.615 7.37 0.00 0.00 2.69
401 402 5.475220 TCAGAAATCCGCTACCAAAATTTGA 59.525 36.000 7.37 0.00 0.00 2.69
402 403 5.708948 TCAGAAATCCGCTACCAAAATTTG 58.291 37.500 0.00 0.00 0.00 2.32
403 404 5.975693 TCAGAAATCCGCTACCAAAATTT 57.024 34.783 0.00 0.00 0.00 1.82
404 405 5.975693 TTCAGAAATCCGCTACCAAAATT 57.024 34.783 0.00 0.00 0.00 1.82
405 406 5.220854 CGATTCAGAAATCCGCTACCAAAAT 60.221 40.000 0.00 0.00 38.46 1.82
406 407 4.094294 CGATTCAGAAATCCGCTACCAAAA 59.906 41.667 0.00 0.00 38.46 2.44
407 408 3.621268 CGATTCAGAAATCCGCTACCAAA 59.379 43.478 0.00 0.00 38.46 3.28
408 409 3.194861 CGATTCAGAAATCCGCTACCAA 58.805 45.455 0.00 0.00 38.46 3.67
409 410 2.483013 CCGATTCAGAAATCCGCTACCA 60.483 50.000 0.00 0.00 38.46 3.25
410 411 2.135933 CCGATTCAGAAATCCGCTACC 58.864 52.381 0.00 0.00 38.46 3.18
411 412 3.093717 TCCGATTCAGAAATCCGCTAC 57.906 47.619 0.00 0.00 38.46 3.58
412 413 4.039245 AGAATCCGATTCAGAAATCCGCTA 59.961 41.667 20.71 0.00 41.71 4.26
413 414 2.918712 ATCCGATTCAGAAATCCGCT 57.081 45.000 0.00 0.00 38.46 5.52
414 415 3.059325 CAGAATCCGATTCAGAAATCCGC 60.059 47.826 20.71 0.00 41.71 5.54
415 416 3.059325 GCAGAATCCGATTCAGAAATCCG 60.059 47.826 20.71 2.93 41.71 4.18
416 417 4.024218 CAGCAGAATCCGATTCAGAAATCC 60.024 45.833 20.71 2.84 41.71 3.01
417 418 4.024218 CCAGCAGAATCCGATTCAGAAATC 60.024 45.833 20.71 3.15 41.71 2.17
418 419 3.881688 CCAGCAGAATCCGATTCAGAAAT 59.118 43.478 20.71 0.00 41.71 2.17
419 420 3.273434 CCAGCAGAATCCGATTCAGAAA 58.727 45.455 20.71 0.00 41.71 2.52
420 421 2.420547 CCCAGCAGAATCCGATTCAGAA 60.421 50.000 20.71 0.00 41.71 3.02
421 422 1.139654 CCCAGCAGAATCCGATTCAGA 59.860 52.381 20.71 0.00 41.71 3.27
422 423 1.134280 ACCCAGCAGAATCCGATTCAG 60.134 52.381 20.71 14.79 41.71 3.02
423 424 0.911769 ACCCAGCAGAATCCGATTCA 59.088 50.000 20.71 0.00 41.71 2.57
424 425 1.943340 GAACCCAGCAGAATCCGATTC 59.057 52.381 12.51 12.51 39.56 2.52
425 426 1.743772 CGAACCCAGCAGAATCCGATT 60.744 52.381 0.00 0.00 0.00 3.34
426 427 0.179073 CGAACCCAGCAGAATCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
427 428 1.218047 CGAACCCAGCAGAATCCGA 59.782 57.895 0.00 0.00 0.00 4.55
428 429 2.464459 GCGAACCCAGCAGAATCCG 61.464 63.158 0.00 0.00 34.19 4.18
429 430 2.115291 GGCGAACCCAGCAGAATCC 61.115 63.158 0.00 0.00 36.08 3.01
430 431 3.502572 GGCGAACCCAGCAGAATC 58.497 61.111 0.00 0.00 36.08 2.52
440 441 0.536460 TCTGAACCAAAGGGCGAACC 60.536 55.000 0.00 0.00 37.90 3.62
441 442 1.534729 ATCTGAACCAAAGGGCGAAC 58.465 50.000 0.00 0.00 37.90 3.95
442 443 2.159382 GAATCTGAACCAAAGGGCGAA 58.841 47.619 0.00 0.00 37.90 4.70
443 444 1.351017 AGAATCTGAACCAAAGGGCGA 59.649 47.619 0.00 0.00 37.90 5.54
444 445 1.470098 CAGAATCTGAACCAAAGGGCG 59.530 52.381 3.77 0.00 33.00 6.13
445 446 1.203287 GCAGAATCTGAACCAAAGGGC 59.797 52.381 15.38 0.00 33.00 5.19
446 447 1.821136 GGCAGAATCTGAACCAAAGGG 59.179 52.381 15.38 0.00 35.04 3.95
447 448 1.470098 CGGCAGAATCTGAACCAAAGG 59.530 52.381 15.38 0.00 32.44 3.11
448 449 1.135575 GCGGCAGAATCTGAACCAAAG 60.136 52.381 15.38 0.00 32.44 2.77
449 450 0.881118 GCGGCAGAATCTGAACCAAA 59.119 50.000 15.38 0.00 32.44 3.28
450 451 0.250684 TGCGGCAGAATCTGAACCAA 60.251 50.000 15.38 0.00 32.44 3.67
451 452 0.035152 ATGCGGCAGAATCTGAACCA 60.035 50.000 15.38 7.00 32.44 3.67
452 453 0.379669 CATGCGGCAGAATCTGAACC 59.620 55.000 15.38 5.64 32.44 3.62
453 454 0.379669 CCATGCGGCAGAATCTGAAC 59.620 55.000 15.38 4.90 32.44 3.18
454 455 2.784547 CCATGCGGCAGAATCTGAA 58.215 52.632 15.38 0.00 32.44 3.02
455 456 4.545929 CCATGCGGCAGAATCTGA 57.454 55.556 15.38 0.00 32.44 3.27
467 468 0.248377 GACTGATTTCGCTGCCATGC 60.248 55.000 0.00 0.00 0.00 4.06
468 469 0.027194 CGACTGATTTCGCTGCCATG 59.973 55.000 0.00 0.00 31.03 3.66
469 470 0.108186 TCGACTGATTTCGCTGCCAT 60.108 50.000 0.00 0.00 38.95 4.40
470 471 0.108186 ATCGACTGATTTCGCTGCCA 60.108 50.000 0.00 0.00 38.95 4.92
471 472 1.852942 TATCGACTGATTTCGCTGCC 58.147 50.000 0.00 0.00 38.95 4.85
472 473 3.925688 TTTATCGACTGATTTCGCTGC 57.074 42.857 0.00 0.00 38.95 5.25
473 474 4.033358 AGCTTTTATCGACTGATTTCGCTG 59.967 41.667 0.00 0.00 38.95 5.18
474 475 4.033358 CAGCTTTTATCGACTGATTTCGCT 59.967 41.667 0.00 0.00 38.95 4.93
475 476 4.032900 TCAGCTTTTATCGACTGATTTCGC 59.967 41.667 0.00 0.00 38.95 4.70
476 477 5.702622 TCAGCTTTTATCGACTGATTTCG 57.297 39.130 0.00 0.00 40.53 3.46
477 478 6.128282 TGGTTCAGCTTTTATCGACTGATTTC 60.128 38.462 2.43 0.00 38.84 2.17
478 479 5.705441 TGGTTCAGCTTTTATCGACTGATTT 59.295 36.000 2.43 0.00 38.84 2.17
479 480 5.245531 TGGTTCAGCTTTTATCGACTGATT 58.754 37.500 2.43 0.00 38.84 2.57
480 481 4.832248 TGGTTCAGCTTTTATCGACTGAT 58.168 39.130 2.43 0.00 38.84 2.90
481 482 4.265904 TGGTTCAGCTTTTATCGACTGA 57.734 40.909 0.00 0.00 37.38 3.41
482 483 5.147162 GTTTGGTTCAGCTTTTATCGACTG 58.853 41.667 0.00 0.00 0.00 3.51
483 484 4.819630 TGTTTGGTTCAGCTTTTATCGACT 59.180 37.500 0.00 0.00 0.00 4.18
484 485 5.049680 TCTGTTTGGTTCAGCTTTTATCGAC 60.050 40.000 0.00 0.00 33.48 4.20
485 486 5.060506 TCTGTTTGGTTCAGCTTTTATCGA 58.939 37.500 0.00 0.00 33.48 3.59
486 487 5.356882 TCTGTTTGGTTCAGCTTTTATCG 57.643 39.130 0.00 0.00 33.48 2.92
487 488 5.157067 GCTCTGTTTGGTTCAGCTTTTATC 58.843 41.667 0.00 0.00 33.48 1.75
488 489 4.021981 GGCTCTGTTTGGTTCAGCTTTTAT 60.022 41.667 0.00 0.00 33.48 1.40
489 490 3.317993 GGCTCTGTTTGGTTCAGCTTTTA 59.682 43.478 0.00 0.00 33.48 1.52
490 491 2.101415 GGCTCTGTTTGGTTCAGCTTTT 59.899 45.455 0.00 0.00 33.48 2.27
491 492 1.683385 GGCTCTGTTTGGTTCAGCTTT 59.317 47.619 0.00 0.00 33.48 3.51
492 493 1.133668 AGGCTCTGTTTGGTTCAGCTT 60.134 47.619 0.00 0.00 33.48 3.74
493 494 0.475906 AGGCTCTGTTTGGTTCAGCT 59.524 50.000 0.00 0.00 33.48 4.24
494 495 2.185004 TAGGCTCTGTTTGGTTCAGC 57.815 50.000 0.00 0.00 33.48 4.26
495 496 3.077359 CCTTAGGCTCTGTTTGGTTCAG 58.923 50.000 0.00 0.00 0.00 3.02
496 497 2.441750 ACCTTAGGCTCTGTTTGGTTCA 59.558 45.455 0.00 0.00 0.00 3.18
497 498 3.141767 ACCTTAGGCTCTGTTTGGTTC 57.858 47.619 0.00 0.00 0.00 3.62
498 499 3.117663 TCAACCTTAGGCTCTGTTTGGTT 60.118 43.478 0.00 0.00 36.85 3.67
499 500 2.441750 TCAACCTTAGGCTCTGTTTGGT 59.558 45.455 0.00 0.00 0.00 3.67
500 501 3.140325 TCAACCTTAGGCTCTGTTTGG 57.860 47.619 0.00 0.00 0.00 3.28
501 502 3.441572 CCATCAACCTTAGGCTCTGTTTG 59.558 47.826 0.00 0.00 0.00 2.93
502 503 3.074538 ACCATCAACCTTAGGCTCTGTTT 59.925 43.478 0.00 0.00 0.00 2.83
503 504 2.644798 ACCATCAACCTTAGGCTCTGTT 59.355 45.455 0.00 0.00 0.00 3.16
504 505 2.026822 CACCATCAACCTTAGGCTCTGT 60.027 50.000 0.00 0.00 0.00 3.41
505 506 2.026822 ACACCATCAACCTTAGGCTCTG 60.027 50.000 0.00 0.00 0.00 3.35
506 507 2.026822 CACACCATCAACCTTAGGCTCT 60.027 50.000 0.00 0.00 0.00 4.09
507 508 2.027192 TCACACCATCAACCTTAGGCTC 60.027 50.000 0.00 0.00 0.00 4.70
508 509 1.985159 TCACACCATCAACCTTAGGCT 59.015 47.619 0.00 0.00 0.00 4.58
509 510 2.489938 TCACACCATCAACCTTAGGC 57.510 50.000 0.00 0.00 0.00 3.93
510 511 3.282021 CCATCACACCATCAACCTTAGG 58.718 50.000 0.00 0.00 0.00 2.69
544 545 4.513406 AGACAAACCCACTTTACCAAGA 57.487 40.909 0.00 0.00 33.72 3.02
568 569 6.600388 TGTGCAATAATAAAGGCCATCTAGA 58.400 36.000 5.01 0.00 0.00 2.43
569 570 6.882610 TGTGCAATAATAAAGGCCATCTAG 57.117 37.500 5.01 0.00 0.00 2.43
570 571 7.838079 AATGTGCAATAATAAAGGCCATCTA 57.162 32.000 5.01 0.00 0.00 1.98
572 573 8.885494 TTAAATGTGCAATAATAAAGGCCATC 57.115 30.769 5.01 0.00 0.00 3.51
575 576 7.978975 TCACTTAAATGTGCAATAATAAAGGCC 59.021 33.333 0.00 0.00 37.81 5.19
581 587 9.019656 ACCAAGTCACTTAAATGTGCAATAATA 57.980 29.630 0.00 0.00 37.81 0.98
594 600 7.633193 TTTTAAGCTTGACCAAGTCACTTAA 57.367 32.000 9.86 12.75 42.60 1.85
600 606 8.419076 TTTTTCATTTTAAGCTTGACCAAGTC 57.581 30.769 9.86 4.38 40.45 3.01
626 632 1.393539 CGCGGAGATTCGTGTGATTTT 59.606 47.619 0.00 0.00 36.10 1.82
643 668 5.177511 AGTTCCATGTCATTGATATTACGCG 59.822 40.000 3.53 3.53 0.00 6.01
644 669 6.545504 AGTTCCATGTCATTGATATTACGC 57.454 37.500 0.00 0.00 0.00 4.42
645 670 9.476202 TCTAAGTTCCATGTCATTGATATTACG 57.524 33.333 0.00 0.00 0.00 3.18
702 727 8.117813 AGAAAATCCGGATAGTTTTGCTTAAA 57.882 30.769 19.48 0.00 0.00 1.52
705 730 6.590234 AAGAAAATCCGGATAGTTTTGCTT 57.410 33.333 19.48 15.90 0.00 3.91
717 742 5.006358 CACGGTTAGATGTAAGAAAATCCGG 59.994 44.000 10.50 0.00 38.74 5.14
738 763 0.514691 GCTGAGAAAAGCAGACCACG 59.485 55.000 0.00 0.00 43.01 4.94
739 764 1.889545 AGCTGAGAAAAGCAGACCAC 58.110 50.000 0.00 0.00 46.08 4.16
740 765 2.899900 TCTAGCTGAGAAAAGCAGACCA 59.100 45.455 0.00 0.00 46.08 4.02
742 767 3.919216 TGTCTAGCTGAGAAAAGCAGAC 58.081 45.455 15.60 15.60 46.08 3.51
756 781 5.588648 AGTCTGAGTCTAAGTCATGTCTAGC 59.411 44.000 0.00 0.00 0.00 3.42
762 787 8.725405 TCTAAGTAGTCTGAGTCTAAGTCATG 57.275 38.462 0.00 0.00 0.00 3.07
771 796 9.640963 TTTTGCTAAATCTAAGTAGTCTGAGTC 57.359 33.333 0.00 0.00 0.00 3.36
772 797 9.425577 GTTTTGCTAAATCTAAGTAGTCTGAGT 57.574 33.333 0.00 0.00 0.00 3.41
812 849 9.002600 GTAGGCATCATCAACATTATGTCATTA 57.997 33.333 0.00 0.00 0.00 1.90
827 864 2.860735 GACGTCACAAGTAGGCATCATC 59.139 50.000 11.55 0.00 0.00 2.92
891 928 3.730715 GCACACAAACAATGTACAAGAGC 59.269 43.478 0.00 0.00 41.46 4.09
901 938 2.475818 CACAGCATGCACACAAACAAT 58.524 42.857 21.98 0.00 42.53 2.71
959 996 2.119457 GCAAAAAGAGCTCCGTTTGTG 58.881 47.619 27.57 20.71 34.24 3.33
960 997 2.024414 AGCAAAAAGAGCTCCGTTTGT 58.976 42.857 27.57 17.75 38.01 2.83
1094 1158 2.224523 CCACCACCGCATAGGATATTGT 60.225 50.000 0.00 0.00 45.00 2.71
1260 1324 1.878102 GCGATATCGGTGCCCATTTCT 60.878 52.381 25.51 0.00 40.23 2.52
1275 1339 2.758327 AGGTGGACGCAGGCGATA 60.758 61.111 21.62 3.00 42.83 2.92
1632 1706 0.037697 CGTTGCCACAGTAGTGCCTA 60.038 55.000 0.00 0.00 44.53 3.93
1764 1838 2.678934 AACGCGTAGAGGAGCCCA 60.679 61.111 14.46 0.00 0.00 5.36
2026 2100 1.945394 GACCGTCGATGGAACTAGCTA 59.055 52.381 30.28 0.00 0.00 3.32
2027 2101 0.739561 GACCGTCGATGGAACTAGCT 59.260 55.000 30.28 5.45 0.00 3.32
2028 2102 0.591741 CGACCGTCGATGGAACTAGC 60.592 60.000 30.28 10.25 43.74 3.42
2029 2103 0.731417 ACGACCGTCGATGGAACTAG 59.269 55.000 30.28 16.50 43.74 2.57
2030 2104 1.167851 AACGACCGTCGATGGAACTA 58.832 50.000 30.28 0.00 43.74 2.24
2031 2105 1.167851 TAACGACCGTCGATGGAACT 58.832 50.000 30.28 7.93 43.74 3.01
2032 2106 1.650645 GTTAACGACCGTCGATGGAAC 59.349 52.381 30.28 18.39 43.74 3.62
2033 2107 1.402720 GGTTAACGACCGTCGATGGAA 60.403 52.381 30.28 10.60 43.74 3.53
2034 2108 0.171007 GGTTAACGACCGTCGATGGA 59.829 55.000 30.28 4.08 43.74 3.41
2035 2109 2.657336 GGTTAACGACCGTCGATGG 58.343 57.895 27.03 22.38 43.74 3.51
2044 2118 6.774084 TCTTGTTGTAAAAGTGGTTAACGAC 58.226 36.000 12.39 12.39 0.00 4.34
2045 2119 6.981762 TCTTGTTGTAAAAGTGGTTAACGA 57.018 33.333 0.00 0.00 0.00 3.85
2046 2120 7.245604 ACTTCTTGTTGTAAAAGTGGTTAACG 58.754 34.615 0.00 0.00 31.05 3.18
2124 2203 2.190578 CGGGAGGTCCTTGCATCC 59.809 66.667 0.00 0.00 38.49 3.51
2129 2208 7.325014 AAAGTATTTCTCCGGGAGGTCCTTG 62.325 48.000 23.39 0.00 43.70 3.61
2130 2209 5.313243 AAAGTATTTCTCCGGGAGGTCCTT 61.313 45.833 23.39 14.56 43.70 3.36
2131 2210 3.825658 AAAGTATTTCTCCGGGAGGTCCT 60.826 47.826 23.39 9.87 43.70 3.85
2132 2211 2.504585 AAAGTATTTCTCCGGGAGGTCC 59.495 50.000 23.39 7.88 43.70 4.46
2133 2212 3.908643 AAAGTATTTCTCCGGGAGGTC 57.091 47.619 23.39 9.75 43.70 3.85
2134 2213 4.217836 GAAAAGTATTTCTCCGGGAGGT 57.782 45.455 23.39 12.44 45.59 3.85
2158 2237 6.389091 CATGATAGAAAATCCTCTCCGAGAG 58.611 44.000 17.34 17.34 41.96 3.20
2159 2238 5.279206 GCATGATAGAAAATCCTCTCCGAGA 60.279 44.000 0.00 0.00 0.00 4.04
2160 2239 4.928615 GCATGATAGAAAATCCTCTCCGAG 59.071 45.833 0.00 0.00 0.00 4.63
2161 2240 4.344968 TGCATGATAGAAAATCCTCTCCGA 59.655 41.667 0.00 0.00 0.00 4.55
2162 2241 4.450419 GTGCATGATAGAAAATCCTCTCCG 59.550 45.833 0.00 0.00 0.00 4.63
2645 2737 7.884816 TGACGAGGAGAACTTTAAAACTATG 57.115 36.000 0.00 0.00 0.00 2.23
2771 2864 3.208594 TCTGACCACATGCAAGCATATC 58.791 45.455 7.29 4.40 34.91 1.63
2940 3040 1.114119 TGCACAACACCACCATGCAT 61.114 50.000 0.00 0.00 41.18 3.96
2953 3053 3.611293 CGCAAATGTTATGTCCTGCACAA 60.611 43.478 0.00 0.00 38.97 3.33
2990 3090 3.295734 CCACTCGATGGCATTCGAT 57.704 52.632 17.80 9.12 46.16 3.59
3012 3112 1.378882 GCATTCGCCATCTCTGCCAA 61.379 55.000 0.00 0.00 0.00 4.52
3104 3204 1.576577 AGATGAGCTGTGGGATGTCA 58.423 50.000 0.00 0.00 0.00 3.58
3191 3291 2.203082 AGTGGTGTCAGAGAGCGCA 61.203 57.895 11.47 0.00 0.00 6.09
3278 3477 2.361104 GGCTCATCCCAAACCGCA 60.361 61.111 0.00 0.00 0.00 5.69
3340 3539 0.537143 GAGTGCCACACCACCATCAA 60.537 55.000 0.00 0.00 36.38 2.57
3362 3561 3.773667 AGATGAACCTCAGCTCATTCTCA 59.226 43.478 0.00 0.00 39.11 3.27
3453 3652 0.921896 AACCCATGTATGAGCCTGCT 59.078 50.000 0.00 0.00 0.00 4.24
3467 3666 0.823356 GCTTGCTCCAAGTGAACCCA 60.823 55.000 6.80 0.00 42.77 4.51
3476 3675 2.597217 CCCGTTGGCTTGCTCCAA 60.597 61.111 2.29 2.29 43.36 3.53
3577 3776 1.298859 GGCACGGTAGAGGTTTGCTG 61.299 60.000 0.00 0.00 33.55 4.41
3581 3780 1.373812 GGTGGCACGGTAGAGGTTT 59.626 57.895 12.17 0.00 0.00 3.27
3592 3791 5.560724 ACATATATTAGATGGTGGTGGCAC 58.439 41.667 9.70 9.70 0.00 5.01
3644 3843 0.317160 TTGTGATCAACCGCTCGACT 59.683 50.000 0.00 0.00 0.00 4.18
3741 3940 8.408043 TGGATGGATGATTATTAATGTCAACC 57.592 34.615 17.64 17.64 35.92 3.77
3842 4041 7.559486 ACAATACTCATGCAAGAGATACTTCA 58.441 34.615 24.79 2.20 38.98 3.02
3960 4159 4.478203 TGGAACTTTGTGATCCAATCCAA 58.522 39.130 11.94 0.00 43.39 3.53
3986 4185 2.065993 GTGAAGTGCACTCTAGCGAA 57.934 50.000 21.95 0.00 44.27 4.70
3999 4198 2.551270 TGGGATAGGCAAGAGTGAAGT 58.449 47.619 0.00 0.00 0.00 3.01
4010 4209 0.466124 ACTCGAAGCTTGGGATAGGC 59.534 55.000 2.10 0.00 0.00 3.93
4028 4227 3.978687 TCTCTTCTCCGTCACAAAAGAC 58.021 45.455 0.00 0.00 35.19 3.01
4029 4228 3.889538 TCTCTCTTCTCCGTCACAAAAGA 59.110 43.478 0.00 0.00 0.00 2.52
4039 4238 7.276878 GGTTTTCTCTTAAATCTCTCTTCTCCG 59.723 40.741 0.00 0.00 0.00 4.63
4081 4286 5.470368 GGTTATTCTTGGCTTGAAGGTTTC 58.530 41.667 0.00 0.00 0.00 2.78
4119 4324 3.824443 TCCAAGAGTAACTGACACGATGA 59.176 43.478 0.00 0.00 0.00 2.92
4188 4394 5.540911 CAACTTATTGGTTGCAAATCCACT 58.459 37.500 8.23 6.28 39.76 4.00
4271 4477 1.134699 TCCGACAATCACATCCTCAGC 60.135 52.381 0.00 0.00 0.00 4.26
4289 4495 4.578928 CCTTGCTAGAGAGTCTAAGAGTCC 59.421 50.000 6.23 0.00 32.86 3.85
4354 4560 4.227134 CCATCGGAGCGGGTGAGG 62.227 72.222 0.00 0.00 0.00 3.86
4355 4561 4.227134 CCCATCGGAGCGGGTGAG 62.227 72.222 7.05 0.00 35.56 3.51
4359 4565 1.523032 GTTAACCCATCGGAGCGGG 60.523 63.158 12.56 12.56 44.25 6.13
4362 4568 2.546162 GCTAGAGTTAACCCATCGGAGC 60.546 54.545 0.88 5.04 0.00 4.70
4367 4573 4.095036 GCAAAGTGCTAGAGTTAACCCATC 59.905 45.833 0.88 0.00 40.96 3.51
4368 4574 4.010349 GCAAAGTGCTAGAGTTAACCCAT 58.990 43.478 0.88 0.00 40.96 4.00
4382 4588 2.544486 CCAAGTTGAGAAGGCAAAGTGC 60.544 50.000 3.87 0.00 44.08 4.40
4447 4653 3.283259 ACCTAGCAACCTAGCAATTCC 57.717 47.619 0.00 0.00 39.81 3.01
4450 4656 8.322091 CCTATATAAACCTAGCAACCTAGCAAT 58.678 37.037 0.00 0.00 39.81 3.56
4451 4657 7.291651 ACCTATATAAACCTAGCAACCTAGCAA 59.708 37.037 0.00 0.00 39.81 3.91
4452 4658 6.785963 ACCTATATAAACCTAGCAACCTAGCA 59.214 38.462 0.00 0.00 39.81 3.49
4453 4659 7.242322 ACCTATATAAACCTAGCAACCTAGC 57.758 40.000 0.00 0.00 39.81 3.42
4454 4660 8.648693 ACAACCTATATAAACCTAGCAACCTAG 58.351 37.037 0.00 0.00 40.64 3.02
4455 4661 8.557304 ACAACCTATATAAACCTAGCAACCTA 57.443 34.615 0.00 0.00 0.00 3.08
4456 4662 7.447510 ACAACCTATATAAACCTAGCAACCT 57.552 36.000 0.00 0.00 0.00 3.50
4457 4663 7.771826 TGAACAACCTATATAAACCTAGCAACC 59.228 37.037 0.00 0.00 0.00 3.77
4570 4776 4.905456 TCAAAGGTGAGAACTAAAGGAGGA 59.095 41.667 0.00 0.00 0.00 3.71
4583 4789 6.766944 AGCTTATCTGAATGATCAAAGGTGAG 59.233 38.462 0.00 2.04 37.14 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.