Multiple sequence alignment - TraesCS7A01G201700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G201700 chr7A 100.000 1849 0 0 578 2426 163379852 163381700 0.000000e+00 3415
1 TraesCS7A01G201700 chr7A 100.000 299 0 0 1 299 163379275 163379573 9.800000e-154 553
2 TraesCS7A01G201700 chr7B 89.989 1768 103 34 704 2426 124691837 124693575 0.000000e+00 2217
3 TraesCS7A01G201700 chr7D 89.760 1084 57 22 824 1869 162673734 162674801 0.000000e+00 1338
4 TraesCS7A01G201700 chr7D 87.044 548 33 15 1888 2426 162674850 162675368 3.480000e-163 584


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G201700 chr7A 163379275 163381700 2425 False 1984 3415 100.000 1 2426 2 chr7A.!!$F1 2425
1 TraesCS7A01G201700 chr7B 124691837 124693575 1738 False 2217 2217 89.989 704 2426 1 chr7B.!!$F1 1722
2 TraesCS7A01G201700 chr7D 162673734 162675368 1634 False 961 1338 88.402 824 2426 2 chr7D.!!$F1 1602


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.0293 CGTTTTGTCTGCACTGTGGG 59.971 55.0 10.21 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2097 2201 0.037697 TGCACGACGGAGCTAAATGT 60.038 50.0 14.24 0.0 0.0 2.71 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.228912 GCATAGAAAATTGTCATCCCGG 57.771 45.455 0.00 0.00 0.00 5.73
22 23 3.882888 GCATAGAAAATTGTCATCCCGGA 59.117 43.478 0.73 0.00 0.00 5.14
23 24 4.023707 GCATAGAAAATTGTCATCCCGGAG 60.024 45.833 0.73 0.00 0.00 4.63
24 25 5.368145 CATAGAAAATTGTCATCCCGGAGA 58.632 41.667 0.73 0.00 0.00 3.71
25 26 4.301072 AGAAAATTGTCATCCCGGAGAA 57.699 40.909 0.73 0.00 0.00 2.87
26 27 4.265073 AGAAAATTGTCATCCCGGAGAAG 58.735 43.478 0.73 0.00 0.00 2.85
27 28 2.717639 AATTGTCATCCCGGAGAAGG 57.282 50.000 0.73 0.00 0.00 3.46
28 29 1.879575 ATTGTCATCCCGGAGAAGGA 58.120 50.000 0.73 0.00 37.93 3.36
29 30 1.651737 TTGTCATCCCGGAGAAGGAA 58.348 50.000 0.73 0.00 36.85 3.36
30 31 1.651737 TGTCATCCCGGAGAAGGAAA 58.348 50.000 0.73 0.00 36.85 3.13
31 32 1.278127 TGTCATCCCGGAGAAGGAAAC 59.722 52.381 0.73 0.00 36.85 2.78
32 33 1.278127 GTCATCCCGGAGAAGGAAACA 59.722 52.381 0.73 0.00 36.85 2.83
33 34 1.982226 TCATCCCGGAGAAGGAAACAA 59.018 47.619 0.73 0.00 36.85 2.83
34 35 2.084546 CATCCCGGAGAAGGAAACAAC 58.915 52.381 0.73 0.00 36.85 3.32
35 36 1.133363 TCCCGGAGAAGGAAACAACA 58.867 50.000 0.73 0.00 0.00 3.33
36 37 1.071699 TCCCGGAGAAGGAAACAACAG 59.928 52.381 0.73 0.00 0.00 3.16
37 38 0.875059 CCGGAGAAGGAAACAACAGC 59.125 55.000 0.00 0.00 0.00 4.40
38 39 0.512952 CGGAGAAGGAAACAACAGCG 59.487 55.000 0.00 0.00 0.00 5.18
39 40 1.872237 CGGAGAAGGAAACAACAGCGA 60.872 52.381 0.00 0.00 0.00 4.93
40 41 1.801178 GGAGAAGGAAACAACAGCGAG 59.199 52.381 0.00 0.00 0.00 5.03
41 42 1.801178 GAGAAGGAAACAACAGCGAGG 59.199 52.381 0.00 0.00 0.00 4.63
42 43 0.875059 GAAGGAAACAACAGCGAGGG 59.125 55.000 0.00 0.00 0.00 4.30
43 44 0.182775 AAGGAAACAACAGCGAGGGT 59.817 50.000 0.00 0.00 0.00 4.34
44 45 1.053424 AGGAAACAACAGCGAGGGTA 58.947 50.000 0.00 0.00 0.00 3.69
45 46 1.418637 AGGAAACAACAGCGAGGGTAA 59.581 47.619 0.00 0.00 0.00 2.85
46 47 2.039879 AGGAAACAACAGCGAGGGTAAT 59.960 45.455 0.00 0.00 0.00 1.89
47 48 2.161609 GGAAACAACAGCGAGGGTAATG 59.838 50.000 0.00 0.00 0.00 1.90
48 49 2.561478 AACAACAGCGAGGGTAATGT 57.439 45.000 0.00 0.00 0.00 2.71
49 50 3.688694 AACAACAGCGAGGGTAATGTA 57.311 42.857 0.00 0.00 0.00 2.29
50 51 3.247006 ACAACAGCGAGGGTAATGTAG 57.753 47.619 0.00 0.00 0.00 2.74
51 52 2.829720 ACAACAGCGAGGGTAATGTAGA 59.170 45.455 0.00 0.00 0.00 2.59
52 53 3.259876 ACAACAGCGAGGGTAATGTAGAA 59.740 43.478 0.00 0.00 0.00 2.10
53 54 3.521947 ACAGCGAGGGTAATGTAGAAC 57.478 47.619 0.00 0.00 0.00 3.01
54 55 2.829720 ACAGCGAGGGTAATGTAGAACA 59.170 45.455 0.00 0.00 0.00 3.18
55 56 3.187700 CAGCGAGGGTAATGTAGAACAC 58.812 50.000 0.00 0.00 0.00 3.32
56 57 2.167900 AGCGAGGGTAATGTAGAACACC 59.832 50.000 0.00 0.00 0.00 4.16
60 61 3.277142 GGGTAATGTAGAACACCCCAG 57.723 52.381 0.00 0.00 44.20 4.45
61 62 2.574824 GGGTAATGTAGAACACCCCAGT 59.425 50.000 0.00 0.00 44.20 4.00
62 63 3.009805 GGGTAATGTAGAACACCCCAGTT 59.990 47.826 0.00 0.00 44.20 3.16
63 64 4.259356 GGTAATGTAGAACACCCCAGTTC 58.741 47.826 0.00 0.00 46.35 3.01
70 71 3.764237 GAACACCCCAGTTCTAGTCAA 57.236 47.619 0.00 0.00 43.46 3.18
71 72 4.081322 GAACACCCCAGTTCTAGTCAAA 57.919 45.455 0.00 0.00 43.46 2.69
72 73 4.457466 GAACACCCCAGTTCTAGTCAAAA 58.543 43.478 0.00 0.00 43.46 2.44
73 74 4.086706 ACACCCCAGTTCTAGTCAAAAG 57.913 45.455 0.00 0.00 0.00 2.27
74 75 3.181443 ACACCCCAGTTCTAGTCAAAAGG 60.181 47.826 0.00 0.00 0.00 3.11
75 76 3.072476 CACCCCAGTTCTAGTCAAAAGGA 59.928 47.826 0.00 0.00 0.00 3.36
76 77 3.328050 ACCCCAGTTCTAGTCAAAAGGAG 59.672 47.826 0.00 0.00 0.00 3.69
77 78 3.328050 CCCCAGTTCTAGTCAAAAGGAGT 59.672 47.826 0.00 0.00 0.00 3.85
78 79 4.202472 CCCCAGTTCTAGTCAAAAGGAGTT 60.202 45.833 0.00 0.00 0.00 3.01
79 80 4.757149 CCCAGTTCTAGTCAAAAGGAGTTG 59.243 45.833 0.00 0.00 0.00 3.16
80 81 5.368989 CCAGTTCTAGTCAAAAGGAGTTGT 58.631 41.667 0.00 0.00 0.00 3.32
81 82 5.237344 CCAGTTCTAGTCAAAAGGAGTTGTG 59.763 44.000 0.00 0.00 0.00 3.33
82 83 5.237344 CAGTTCTAGTCAAAAGGAGTTGTGG 59.763 44.000 0.00 0.00 0.00 4.17
83 84 5.130477 AGTTCTAGTCAAAAGGAGTTGTGGA 59.870 40.000 0.00 0.00 0.00 4.02
84 85 5.623956 TCTAGTCAAAAGGAGTTGTGGAA 57.376 39.130 0.00 0.00 0.00 3.53
85 86 5.365619 TCTAGTCAAAAGGAGTTGTGGAAC 58.634 41.667 0.00 0.00 37.35 3.62
98 99 3.073086 TGGAACACAACCTCACACG 57.927 52.632 0.00 0.00 0.00 4.49
99 100 1.092921 TGGAACACAACCTCACACGC 61.093 55.000 0.00 0.00 0.00 5.34
100 101 0.814010 GGAACACAACCTCACACGCT 60.814 55.000 0.00 0.00 0.00 5.07
101 102 0.582005 GAACACAACCTCACACGCTC 59.418 55.000 0.00 0.00 0.00 5.03
102 103 0.178068 AACACAACCTCACACGCTCT 59.822 50.000 0.00 0.00 0.00 4.09
103 104 0.249489 ACACAACCTCACACGCTCTC 60.249 55.000 0.00 0.00 0.00 3.20
104 105 0.946221 CACAACCTCACACGCTCTCC 60.946 60.000 0.00 0.00 0.00 3.71
105 106 1.734477 CAACCTCACACGCTCTCCG 60.734 63.158 0.00 0.00 44.21 4.63
106 107 1.901948 AACCTCACACGCTCTCCGA 60.902 57.895 0.00 0.00 41.02 4.55
107 108 1.251527 AACCTCACACGCTCTCCGAT 61.252 55.000 0.00 0.00 41.02 4.18
108 109 1.226802 CCTCACACGCTCTCCGATG 60.227 63.158 0.00 0.00 41.02 3.84
109 110 1.657751 CCTCACACGCTCTCCGATGA 61.658 60.000 0.00 0.00 41.02 2.92
110 111 0.248417 CTCACACGCTCTCCGATGAG 60.248 60.000 7.11 7.11 42.54 2.90
116 117 4.149346 CTCTCCGATGAGCCGAGA 57.851 61.111 0.00 0.00 38.58 4.04
117 118 1.652012 CTCTCCGATGAGCCGAGAC 59.348 63.158 0.00 0.00 38.58 3.36
118 119 0.817634 CTCTCCGATGAGCCGAGACT 60.818 60.000 0.00 0.00 38.58 3.24
119 120 0.468648 TCTCCGATGAGCCGAGACTA 59.531 55.000 0.00 0.00 38.58 2.59
120 121 1.134189 TCTCCGATGAGCCGAGACTAA 60.134 52.381 0.00 0.00 38.58 2.24
121 122 1.002251 CTCCGATGAGCCGAGACTAAC 60.002 57.143 0.00 0.00 0.00 2.34
122 123 0.030908 CCGATGAGCCGAGACTAACC 59.969 60.000 0.00 0.00 0.00 2.85
123 124 0.738975 CGATGAGCCGAGACTAACCA 59.261 55.000 0.00 0.00 0.00 3.67
124 125 1.134367 CGATGAGCCGAGACTAACCAA 59.866 52.381 0.00 0.00 0.00 3.67
125 126 2.541556 GATGAGCCGAGACTAACCAAC 58.458 52.381 0.00 0.00 0.00 3.77
126 127 0.606604 TGAGCCGAGACTAACCAACC 59.393 55.000 0.00 0.00 0.00 3.77
127 128 0.896226 GAGCCGAGACTAACCAACCT 59.104 55.000 0.00 0.00 0.00 3.50
128 129 1.275573 GAGCCGAGACTAACCAACCTT 59.724 52.381 0.00 0.00 0.00 3.50
129 130 1.275573 AGCCGAGACTAACCAACCTTC 59.724 52.381 0.00 0.00 0.00 3.46
130 131 1.992170 CCGAGACTAACCAACCTTCG 58.008 55.000 0.00 0.00 0.00 3.79
131 132 1.271656 CCGAGACTAACCAACCTTCGT 59.728 52.381 0.00 0.00 0.00 3.85
132 133 2.593257 CGAGACTAACCAACCTTCGTC 58.407 52.381 0.00 0.00 0.00 4.20
133 134 2.030540 CGAGACTAACCAACCTTCGTCA 60.031 50.000 0.00 0.00 0.00 4.35
134 135 3.576648 GAGACTAACCAACCTTCGTCAG 58.423 50.000 0.00 0.00 0.00 3.51
135 136 2.963782 AGACTAACCAACCTTCGTCAGT 59.036 45.455 0.00 0.00 0.00 3.41
136 137 3.005578 AGACTAACCAACCTTCGTCAGTC 59.994 47.826 0.00 0.00 33.08 3.51
137 138 2.288030 ACTAACCAACCTTCGTCAGTCG 60.288 50.000 0.00 0.00 41.41 4.18
138 139 0.249741 AACCAACCTTCGTCAGTCGG 60.250 55.000 0.00 0.00 40.32 4.79
139 140 1.111116 ACCAACCTTCGTCAGTCGGA 61.111 55.000 0.00 0.00 40.32 4.55
140 141 0.032952 CCAACCTTCGTCAGTCGGAA 59.967 55.000 0.00 0.00 40.32 4.30
141 142 1.137513 CAACCTTCGTCAGTCGGAAC 58.862 55.000 0.00 0.00 40.32 3.62
142 143 1.038280 AACCTTCGTCAGTCGGAACT 58.962 50.000 0.00 0.00 40.32 3.01
153 154 3.691342 CGGAACTGGAGCCGGTGA 61.691 66.667 1.90 0.00 43.67 4.02
154 155 2.747686 GGAACTGGAGCCGGTGAA 59.252 61.111 1.90 0.00 35.44 3.18
155 156 1.671379 GGAACTGGAGCCGGTGAAC 60.671 63.158 1.90 0.00 35.44 3.18
156 157 1.671379 GAACTGGAGCCGGTGAACC 60.671 63.158 1.90 2.21 35.44 3.62
157 158 2.391724 GAACTGGAGCCGGTGAACCA 62.392 60.000 1.90 7.08 35.44 3.67
158 159 1.990160 AACTGGAGCCGGTGAACCAA 61.990 55.000 1.90 0.00 35.44 3.67
159 160 1.672356 CTGGAGCCGGTGAACCAAG 60.672 63.158 1.90 0.00 35.14 3.61
160 161 2.111999 CTGGAGCCGGTGAACCAAGA 62.112 60.000 1.90 0.00 35.14 3.02
161 162 1.671379 GGAGCCGGTGAACCAAGAC 60.671 63.158 1.90 0.00 35.14 3.01
162 163 2.027625 GAGCCGGTGAACCAAGACG 61.028 63.158 1.90 0.00 35.14 4.18
163 164 2.280592 GCCGGTGAACCAAGACGT 60.281 61.111 1.90 0.00 35.14 4.34
164 165 1.890510 GCCGGTGAACCAAGACGTT 60.891 57.895 1.90 0.00 35.14 3.99
165 166 1.441732 GCCGGTGAACCAAGACGTTT 61.442 55.000 1.90 0.00 35.14 3.60
166 167 1.018910 CCGGTGAACCAAGACGTTTT 58.981 50.000 0.00 0.00 35.14 2.43
167 168 1.268335 CCGGTGAACCAAGACGTTTTG 60.268 52.381 11.68 11.68 35.14 2.44
168 169 1.399089 CGGTGAACCAAGACGTTTTGT 59.601 47.619 16.64 0.03 35.14 2.83
169 170 2.538132 CGGTGAACCAAGACGTTTTGTC 60.538 50.000 16.64 9.66 41.34 3.18
178 179 2.091152 GACGTTTTGTCTGCACTGTG 57.909 50.000 2.76 2.76 44.58 3.66
179 180 0.732571 ACGTTTTGTCTGCACTGTGG 59.267 50.000 10.21 0.00 0.00 4.17
180 181 0.029300 CGTTTTGTCTGCACTGTGGG 59.971 55.000 10.21 0.00 0.00 4.61
181 182 1.388547 GTTTTGTCTGCACTGTGGGA 58.611 50.000 10.21 0.00 0.00 4.37
182 183 1.065551 GTTTTGTCTGCACTGTGGGAC 59.934 52.381 10.21 0.00 0.00 4.46
183 184 0.254462 TTTGTCTGCACTGTGGGACA 59.746 50.000 10.21 0.44 37.00 4.02
184 185 0.254462 TTGTCTGCACTGTGGGACAA 59.746 50.000 11.62 11.62 44.16 3.18
185 186 0.463654 TGTCTGCACTGTGGGACAAC 60.464 55.000 10.21 2.25 44.16 3.32
186 187 1.227527 TCTGCACTGTGGGACAACG 60.228 57.895 10.21 0.00 44.16 4.10
187 188 2.896801 CTGCACTGTGGGACAACGC 61.897 63.158 10.21 0.00 44.16 4.84
188 189 4.012895 GCACTGTGGGACAACGCG 62.013 66.667 3.53 3.53 44.16 6.01
189 190 3.345808 CACTGTGGGACAACGCGG 61.346 66.667 12.47 0.00 44.16 6.46
190 191 3.857038 ACTGTGGGACAACGCGGT 61.857 61.111 12.47 0.00 44.16 5.68
191 192 3.041940 CTGTGGGACAACGCGGTC 61.042 66.667 12.47 9.21 44.16 4.79
192 193 4.953868 TGTGGGACAACGCGGTCG 62.954 66.667 12.47 0.76 44.16 4.79
193 194 4.651008 GTGGGACAACGCGGTCGA 62.651 66.667 12.47 0.00 44.16 4.20
194 195 4.351938 TGGGACAACGCGGTCGAG 62.352 66.667 12.47 0.00 38.70 4.04
195 196 4.047059 GGGACAACGCGGTCGAGA 62.047 66.667 12.47 0.00 38.70 4.04
196 197 2.504244 GGACAACGCGGTCGAGAG 60.504 66.667 12.47 0.00 38.70 3.20
197 198 2.254651 GACAACGCGGTCGAGAGT 59.745 61.111 12.47 0.00 39.41 3.24
198 199 1.371389 GACAACGCGGTCGAGAGTT 60.371 57.895 12.47 0.00 39.41 3.01
199 200 1.335697 GACAACGCGGTCGAGAGTTC 61.336 60.000 12.47 0.00 39.41 3.01
200 201 2.087009 CAACGCGGTCGAGAGTTCC 61.087 63.158 12.47 0.00 39.41 3.62
201 202 2.558286 AACGCGGTCGAGAGTTCCA 61.558 57.895 12.47 0.00 39.41 3.53
202 203 2.202492 CGCGGTCGAGAGTTCCAG 60.202 66.667 0.00 0.00 38.10 3.86
203 204 2.687805 CGCGGTCGAGAGTTCCAGA 61.688 63.158 0.00 0.00 38.10 3.86
204 205 1.153997 GCGGTCGAGAGTTCCAGAC 60.154 63.158 0.00 0.00 0.00 3.51
205 206 1.863662 GCGGTCGAGAGTTCCAGACA 61.864 60.000 0.00 0.00 35.49 3.41
206 207 0.596577 CGGTCGAGAGTTCCAGACAA 59.403 55.000 0.00 0.00 35.49 3.18
207 208 1.000607 CGGTCGAGAGTTCCAGACAAA 60.001 52.381 0.00 0.00 35.49 2.83
208 209 2.405172 GGTCGAGAGTTCCAGACAAAC 58.595 52.381 0.00 0.00 35.49 2.93
209 210 2.405172 GTCGAGAGTTCCAGACAAACC 58.595 52.381 0.00 0.00 34.09 3.27
210 211 2.036089 GTCGAGAGTTCCAGACAAACCT 59.964 50.000 0.00 0.00 34.09 3.50
211 212 2.698797 TCGAGAGTTCCAGACAAACCTT 59.301 45.455 0.00 0.00 0.00 3.50
212 213 3.893200 TCGAGAGTTCCAGACAAACCTTA 59.107 43.478 0.00 0.00 0.00 2.69
213 214 4.527038 TCGAGAGTTCCAGACAAACCTTAT 59.473 41.667 0.00 0.00 0.00 1.73
214 215 5.011738 TCGAGAGTTCCAGACAAACCTTATT 59.988 40.000 0.00 0.00 0.00 1.40
215 216 5.348997 CGAGAGTTCCAGACAAACCTTATTC 59.651 44.000 0.00 0.00 0.00 1.75
216 217 5.561679 AGAGTTCCAGACAAACCTTATTCC 58.438 41.667 0.00 0.00 0.00 3.01
217 218 5.073144 AGAGTTCCAGACAAACCTTATTCCA 59.927 40.000 0.00 0.00 0.00 3.53
218 219 5.892348 AGTTCCAGACAAACCTTATTCCAT 58.108 37.500 0.00 0.00 0.00 3.41
219 220 7.027874 AGTTCCAGACAAACCTTATTCCATA 57.972 36.000 0.00 0.00 0.00 2.74
220 221 6.884836 AGTTCCAGACAAACCTTATTCCATAC 59.115 38.462 0.00 0.00 0.00 2.39
221 222 5.751586 TCCAGACAAACCTTATTCCATACC 58.248 41.667 0.00 0.00 0.00 2.73
222 223 4.574828 CCAGACAAACCTTATTCCATACCG 59.425 45.833 0.00 0.00 0.00 4.02
223 224 5.424757 CAGACAAACCTTATTCCATACCGA 58.575 41.667 0.00 0.00 0.00 4.69
224 225 6.055588 CAGACAAACCTTATTCCATACCGAT 58.944 40.000 0.00 0.00 0.00 4.18
225 226 6.017934 CAGACAAACCTTATTCCATACCGATG 60.018 42.308 0.00 0.00 0.00 3.84
226 227 5.996644 ACAAACCTTATTCCATACCGATGA 58.003 37.500 0.00 0.00 34.73 2.92
227 228 5.820947 ACAAACCTTATTCCATACCGATGAC 59.179 40.000 0.00 0.00 34.73 3.06
228 229 4.252971 ACCTTATTCCATACCGATGACG 57.747 45.455 0.00 0.00 34.73 4.35
229 230 3.893200 ACCTTATTCCATACCGATGACGA 59.107 43.478 0.00 0.00 42.66 4.20
230 231 4.235360 CCTTATTCCATACCGATGACGAC 58.765 47.826 0.00 0.00 42.66 4.34
231 232 4.261867 CCTTATTCCATACCGATGACGACA 60.262 45.833 0.00 0.00 42.66 4.35
232 233 2.572191 TTCCATACCGATGACGACAC 57.428 50.000 0.00 0.00 42.66 3.67
233 234 0.742505 TCCATACCGATGACGACACC 59.257 55.000 0.00 0.00 42.66 4.16
234 235 0.458260 CCATACCGATGACGACACCA 59.542 55.000 0.00 0.00 42.66 4.17
235 236 1.536072 CCATACCGATGACGACACCAG 60.536 57.143 0.00 0.00 42.66 4.00
236 237 0.102481 ATACCGATGACGACACCAGC 59.898 55.000 0.00 0.00 42.66 4.85
237 238 2.261172 TACCGATGACGACACCAGCG 62.261 60.000 0.00 0.00 42.29 5.18
238 239 2.880879 CGATGACGACACCAGCGG 60.881 66.667 0.00 0.00 39.43 5.52
239 240 2.261671 GATGACGACACCAGCGGT 59.738 61.111 0.00 0.00 35.62 5.68
240 241 1.805945 GATGACGACACCAGCGGTC 60.806 63.158 0.00 0.00 31.02 4.79
241 242 3.296709 ATGACGACACCAGCGGTCC 62.297 63.158 0.00 0.00 31.02 4.46
242 243 4.736896 GACGACACCAGCGGTCCC 62.737 72.222 0.00 0.00 31.02 4.46
245 246 4.736896 GACACCAGCGGTCCCGAC 62.737 72.222 10.46 0.89 42.83 4.79
253 254 3.299977 CGGTCCCGACACCACAGA 61.300 66.667 0.00 0.00 42.83 3.41
254 255 2.863346 CGGTCCCGACACCACAGAA 61.863 63.158 0.00 0.00 42.83 3.02
255 256 1.301479 GGTCCCGACACCACAGAAC 60.301 63.158 0.00 0.00 36.32 3.01
256 257 1.663702 GTCCCGACACCACAGAACG 60.664 63.158 0.00 0.00 0.00 3.95
257 258 2.357034 CCCGACACCACAGAACGG 60.357 66.667 0.00 0.00 42.67 4.44
258 259 2.420043 CCGACACCACAGAACGGT 59.580 61.111 0.00 0.00 38.97 4.83
266 267 3.314541 ACCACAGAACGGTGACTTATC 57.685 47.619 6.66 0.00 41.32 1.75
267 268 2.897969 ACCACAGAACGGTGACTTATCT 59.102 45.455 6.66 0.00 41.32 1.98
268 269 3.056749 ACCACAGAACGGTGACTTATCTC 60.057 47.826 6.66 0.00 41.32 2.75
269 270 3.056821 CCACAGAACGGTGACTTATCTCA 60.057 47.826 6.66 0.00 41.32 3.27
270 271 4.382040 CCACAGAACGGTGACTTATCTCAT 60.382 45.833 6.66 0.00 41.32 2.90
271 272 4.564372 CACAGAACGGTGACTTATCTCATG 59.436 45.833 0.00 0.00 41.32 3.07
272 273 3.553511 CAGAACGGTGACTTATCTCATGC 59.446 47.826 0.00 0.00 0.00 4.06
273 274 2.604046 ACGGTGACTTATCTCATGCC 57.396 50.000 0.00 0.00 0.00 4.40
274 275 1.139058 ACGGTGACTTATCTCATGCCC 59.861 52.381 0.00 0.00 0.00 5.36
275 276 1.541233 CGGTGACTTATCTCATGCCCC 60.541 57.143 0.00 0.00 0.00 5.80
276 277 1.490490 GGTGACTTATCTCATGCCCCA 59.510 52.381 0.00 0.00 0.00 4.96
277 278 2.092429 GGTGACTTATCTCATGCCCCAA 60.092 50.000 0.00 0.00 0.00 4.12
278 279 3.209410 GTGACTTATCTCATGCCCCAAG 58.791 50.000 0.00 0.00 0.00 3.61
279 280 3.114606 TGACTTATCTCATGCCCCAAGA 58.885 45.455 0.00 0.00 0.00 3.02
280 281 3.135348 TGACTTATCTCATGCCCCAAGAG 59.865 47.826 0.00 0.00 31.46 2.85
281 282 3.118531 ACTTATCTCATGCCCCAAGAGT 58.881 45.455 0.00 0.00 32.04 3.24
282 283 3.525199 ACTTATCTCATGCCCCAAGAGTT 59.475 43.478 0.00 0.00 32.04 3.01
283 284 2.431954 ATCTCATGCCCCAAGAGTTG 57.568 50.000 0.00 0.00 32.04 3.16
284 285 1.361204 TCTCATGCCCCAAGAGTTGA 58.639 50.000 0.00 0.00 32.04 3.18
285 286 1.704628 TCTCATGCCCCAAGAGTTGAA 59.295 47.619 0.00 0.00 32.04 2.69
286 287 2.108075 TCTCATGCCCCAAGAGTTGAAA 59.892 45.455 0.00 0.00 32.04 2.69
287 288 2.892852 CTCATGCCCCAAGAGTTGAAAA 59.107 45.455 0.00 0.00 0.00 2.29
288 289 3.509442 TCATGCCCCAAGAGTTGAAAAT 58.491 40.909 0.00 0.00 0.00 1.82
289 290 3.903090 TCATGCCCCAAGAGTTGAAAATT 59.097 39.130 0.00 0.00 0.00 1.82
290 291 5.083122 TCATGCCCCAAGAGTTGAAAATTA 58.917 37.500 0.00 0.00 0.00 1.40
291 292 5.721000 TCATGCCCCAAGAGTTGAAAATTAT 59.279 36.000 0.00 0.00 0.00 1.28
292 293 5.404466 TGCCCCAAGAGTTGAAAATTATG 57.596 39.130 0.00 0.00 0.00 1.90
293 294 4.222588 TGCCCCAAGAGTTGAAAATTATGG 59.777 41.667 0.00 0.00 0.00 2.74
294 295 4.758688 CCCCAAGAGTTGAAAATTATGGC 58.241 43.478 0.00 0.00 0.00 4.40
295 296 4.467438 CCCCAAGAGTTGAAAATTATGGCT 59.533 41.667 0.00 0.00 0.00 4.75
296 297 5.394553 CCCCAAGAGTTGAAAATTATGGCTC 60.395 44.000 0.00 0.00 0.00 4.70
297 298 5.394553 CCCAAGAGTTGAAAATTATGGCTCC 60.395 44.000 0.00 0.00 0.00 4.70
298 299 5.394553 CCAAGAGTTGAAAATTATGGCTCCC 60.395 44.000 0.00 0.00 0.00 4.30
594 595 2.338984 GAGGCCGGCGGTATACTG 59.661 66.667 28.82 7.38 0.00 2.74
595 596 3.222354 GAGGCCGGCGGTATACTGG 62.222 68.421 28.82 6.71 36.57 4.00
598 599 2.029073 CCGGCGGTATACTGGCAG 59.971 66.667 30.93 23.61 46.95 4.85
599 600 2.495409 CCGGCGGTATACTGGCAGA 61.495 63.158 30.93 5.22 46.95 4.26
600 601 1.007271 CGGCGGTATACTGGCAGAG 60.007 63.158 30.93 15.78 46.95 3.35
601 602 1.367840 GGCGGTATACTGGCAGAGG 59.632 63.158 28.31 4.32 45.98 3.69
602 603 1.113517 GGCGGTATACTGGCAGAGGA 61.114 60.000 28.31 6.23 45.98 3.71
603 604 0.315568 GCGGTATACTGGCAGAGGAG 59.684 60.000 23.66 8.17 0.00 3.69
604 605 0.962489 CGGTATACTGGCAGAGGAGG 59.038 60.000 23.66 1.65 0.00 4.30
605 606 1.478837 CGGTATACTGGCAGAGGAGGA 60.479 57.143 23.66 0.00 0.00 3.71
606 607 2.819726 CGGTATACTGGCAGAGGAGGAT 60.820 54.545 23.66 6.74 0.00 3.24
607 608 2.564947 GGTATACTGGCAGAGGAGGATG 59.435 54.545 23.66 0.00 0.00 3.51
608 609 2.783379 ATACTGGCAGAGGAGGATGA 57.217 50.000 23.66 0.00 0.00 2.92
609 610 1.781786 TACTGGCAGAGGAGGATGAC 58.218 55.000 23.66 0.00 0.00 3.06
610 611 1.326213 ACTGGCAGAGGAGGATGACG 61.326 60.000 23.66 0.00 0.00 4.35
611 612 2.025767 CTGGCAGAGGAGGATGACGG 62.026 65.000 9.42 0.00 0.00 4.79
612 613 2.060980 GGCAGAGGAGGATGACGGT 61.061 63.158 0.00 0.00 0.00 4.83
613 614 1.142748 GCAGAGGAGGATGACGGTG 59.857 63.158 0.00 0.00 0.00 4.94
614 615 1.142748 CAGAGGAGGATGACGGTGC 59.857 63.158 0.00 0.00 0.00 5.01
615 616 1.305297 AGAGGAGGATGACGGTGCA 60.305 57.895 0.00 0.00 0.00 4.57
616 617 1.142748 GAGGAGGATGACGGTGCAG 59.857 63.158 0.00 0.00 0.00 4.41
617 618 2.187946 GGAGGATGACGGTGCAGG 59.812 66.667 0.00 0.00 0.00 4.85
618 619 2.359169 GGAGGATGACGGTGCAGGA 61.359 63.158 0.00 0.00 0.00 3.86
619 620 1.596934 GAGGATGACGGTGCAGGAA 59.403 57.895 0.00 0.00 0.00 3.36
620 621 0.036388 GAGGATGACGGTGCAGGAAA 60.036 55.000 0.00 0.00 0.00 3.13
621 622 0.400213 AGGATGACGGTGCAGGAAAA 59.600 50.000 0.00 0.00 0.00 2.29
622 623 0.521735 GGATGACGGTGCAGGAAAAC 59.478 55.000 0.00 0.00 0.00 2.43
623 624 0.521735 GATGACGGTGCAGGAAAACC 59.478 55.000 0.00 0.00 0.00 3.27
624 625 0.893727 ATGACGGTGCAGGAAAACCC 60.894 55.000 0.00 0.00 32.44 4.11
626 627 0.035739 GACGGTGCAGGAAAACCCTA 59.964 55.000 0.00 0.00 45.60 3.53
627 628 0.036306 ACGGTGCAGGAAAACCCTAG 59.964 55.000 0.00 0.00 45.60 3.02
628 629 0.323629 CGGTGCAGGAAAACCCTAGA 59.676 55.000 0.00 0.00 45.60 2.43
629 630 1.065418 CGGTGCAGGAAAACCCTAGAT 60.065 52.381 0.00 0.00 45.60 1.98
630 631 2.644676 GGTGCAGGAAAACCCTAGATC 58.355 52.381 0.00 0.00 45.60 2.75
631 632 2.026262 GGTGCAGGAAAACCCTAGATCA 60.026 50.000 0.00 0.00 45.60 2.92
632 633 3.010420 GTGCAGGAAAACCCTAGATCAC 58.990 50.000 0.00 0.00 45.60 3.06
633 634 2.026262 TGCAGGAAAACCCTAGATCACC 60.026 50.000 0.00 0.00 45.60 4.02
634 635 2.239907 GCAGGAAAACCCTAGATCACCT 59.760 50.000 0.00 0.00 45.60 4.00
635 636 3.682999 GCAGGAAAACCCTAGATCACCTC 60.683 52.174 0.00 0.00 45.60 3.85
636 637 3.777522 CAGGAAAACCCTAGATCACCTCT 59.222 47.826 0.00 0.00 45.60 3.69
637 638 3.777522 AGGAAAACCCTAGATCACCTCTG 59.222 47.826 0.00 0.00 45.48 3.35
638 639 3.775316 GGAAAACCCTAGATCACCTCTGA 59.225 47.826 0.00 0.00 35.28 3.27
639 640 4.383226 GGAAAACCCTAGATCACCTCTGAC 60.383 50.000 0.00 0.00 35.28 3.51
640 641 3.767309 AACCCTAGATCACCTCTGACT 57.233 47.619 0.00 0.00 35.28 3.41
641 642 4.883021 AACCCTAGATCACCTCTGACTA 57.117 45.455 0.00 0.00 35.28 2.59
642 643 5.411103 AACCCTAGATCACCTCTGACTAT 57.589 43.478 0.00 0.00 35.28 2.12
643 644 4.735369 ACCCTAGATCACCTCTGACTATG 58.265 47.826 0.00 0.00 35.28 2.23
644 645 4.085733 CCCTAGATCACCTCTGACTATGG 58.914 52.174 0.00 0.00 35.28 2.74
645 646 4.085733 CCTAGATCACCTCTGACTATGGG 58.914 52.174 0.00 0.00 35.28 4.00
646 647 3.981516 AGATCACCTCTGACTATGGGA 57.018 47.619 0.00 0.00 31.12 4.37
647 648 4.484026 AGATCACCTCTGACTATGGGAT 57.516 45.455 0.00 0.00 31.12 3.85
648 649 4.415596 AGATCACCTCTGACTATGGGATC 58.584 47.826 0.00 0.00 31.12 3.36
649 650 3.981516 TCACCTCTGACTATGGGATCT 57.018 47.619 0.00 0.00 0.00 2.75
650 651 3.570540 TCACCTCTGACTATGGGATCTG 58.429 50.000 0.00 0.00 0.00 2.90
651 652 3.205282 TCACCTCTGACTATGGGATCTGA 59.795 47.826 0.00 0.00 0.00 3.27
652 653 3.320541 CACCTCTGACTATGGGATCTGAC 59.679 52.174 0.00 0.00 0.00 3.51
653 654 2.896685 CCTCTGACTATGGGATCTGACC 59.103 54.545 0.00 0.00 0.00 4.02
660 661 3.547247 GGGATCTGACCCGTACCC 58.453 66.667 0.00 0.00 40.49 3.69
661 662 2.496291 GGGATCTGACCCGTACCCG 61.496 68.421 0.00 0.00 40.49 5.28
662 663 1.755783 GGATCTGACCCGTACCCGT 60.756 63.158 0.00 0.00 0.00 5.28
663 664 0.466189 GGATCTGACCCGTACCCGTA 60.466 60.000 0.00 0.00 0.00 4.02
664 665 1.613836 GATCTGACCCGTACCCGTAT 58.386 55.000 0.00 0.00 0.00 3.06
665 666 1.959282 GATCTGACCCGTACCCGTATT 59.041 52.381 0.00 0.00 0.00 1.89
666 667 1.392589 TCTGACCCGTACCCGTATTC 58.607 55.000 0.00 0.00 0.00 1.75
667 668 1.105457 CTGACCCGTACCCGTATTCA 58.895 55.000 0.00 0.00 0.00 2.57
668 669 1.684983 CTGACCCGTACCCGTATTCAT 59.315 52.381 0.00 0.00 0.00 2.57
669 670 2.101917 CTGACCCGTACCCGTATTCATT 59.898 50.000 0.00 0.00 0.00 2.57
670 671 2.500910 TGACCCGTACCCGTATTCATTT 59.499 45.455 0.00 0.00 0.00 2.32
671 672 3.055240 TGACCCGTACCCGTATTCATTTT 60.055 43.478 0.00 0.00 0.00 1.82
672 673 4.161189 TGACCCGTACCCGTATTCATTTTA 59.839 41.667 0.00 0.00 0.00 1.52
673 674 5.096443 ACCCGTACCCGTATTCATTTTAA 57.904 39.130 0.00 0.00 0.00 1.52
674 675 5.118286 ACCCGTACCCGTATTCATTTTAAG 58.882 41.667 0.00 0.00 0.00 1.85
675 676 5.104982 ACCCGTACCCGTATTCATTTTAAGA 60.105 40.000 0.00 0.00 0.00 2.10
676 677 5.816777 CCCGTACCCGTATTCATTTTAAGAA 59.183 40.000 0.00 0.00 0.00 2.52
677 678 6.484308 CCCGTACCCGTATTCATTTTAAGAAT 59.516 38.462 0.00 0.00 39.01 2.40
678 679 7.656948 CCCGTACCCGTATTCATTTTAAGAATA 59.343 37.037 0.00 0.00 37.02 1.75
679 680 9.044150 CCGTACCCGTATTCATTTTAAGAATAA 57.956 33.333 0.00 0.00 39.06 1.40
693 694 8.589701 TTTTAAGAATAAAGTCATCTTCCCCC 57.410 34.615 0.00 0.00 35.22 5.40
694 695 4.423625 AGAATAAAGTCATCTTCCCCCG 57.576 45.455 0.00 0.00 32.90 5.73
695 696 2.640316 ATAAAGTCATCTTCCCCCGC 57.360 50.000 0.00 0.00 32.90 6.13
696 697 1.281419 TAAAGTCATCTTCCCCCGCA 58.719 50.000 0.00 0.00 32.90 5.69
697 698 0.404040 AAAGTCATCTTCCCCCGCAA 59.596 50.000 0.00 0.00 32.90 4.85
698 699 0.404040 AAGTCATCTTCCCCCGCAAA 59.596 50.000 0.00 0.00 0.00 3.68
699 700 0.404040 AGTCATCTTCCCCCGCAAAA 59.596 50.000 0.00 0.00 0.00 2.44
700 701 1.203001 AGTCATCTTCCCCCGCAAAAA 60.203 47.619 0.00 0.00 0.00 1.94
759 761 3.600388 AGTCGTCTTTAATTCTGCCCTG 58.400 45.455 0.00 0.00 0.00 4.45
760 762 3.260884 AGTCGTCTTTAATTCTGCCCTGA 59.739 43.478 0.00 0.00 0.00 3.86
761 763 4.000988 GTCGTCTTTAATTCTGCCCTGAA 58.999 43.478 0.00 0.00 0.00 3.02
772 774 2.031120 CTGCCCTGAAACCAAAAGTCA 58.969 47.619 0.00 0.00 0.00 3.41
773 775 2.430332 CTGCCCTGAAACCAAAAGTCAA 59.570 45.455 0.00 0.00 0.00 3.18
810 812 6.344572 TGAGATCGTCGGTTTTAATTGATG 57.655 37.500 0.00 0.00 0.00 3.07
914 920 5.636903 TGCTTCCCTTCTTATAGCAGAAT 57.363 39.130 0.00 0.00 36.96 2.40
916 922 5.104360 TGCTTCCCTTCTTATAGCAGAATGT 60.104 40.000 0.00 0.00 36.96 2.71
931 951 0.682209 AATGTGCAGGCATCTCCCAC 60.682 55.000 0.00 0.00 34.51 4.61
1026 1046 3.130160 CCGAAGAAGCAGCAGCCC 61.130 66.667 0.00 0.00 43.56 5.19
1028 1048 2.396955 CGAAGAAGCAGCAGCCCAG 61.397 63.158 0.00 0.00 43.56 4.45
1203 1223 0.460311 CGGAAATACTCGGCCTCAGT 59.540 55.000 0.00 5.20 0.00 3.41
1206 1226 1.134560 GAAATACTCGGCCTCAGTCGT 59.865 52.381 7.47 0.00 43.20 4.34
1208 1228 1.102222 ATACTCGGCCTCAGTCGTCC 61.102 60.000 7.47 0.00 43.20 4.79
1450 1501 1.136169 CGTGCATGCATGTATGGATCG 60.136 52.381 28.25 20.41 36.67 3.69
1462 1513 5.165911 TGTATGGATCGACGTCTACTTTC 57.834 43.478 14.70 3.08 0.00 2.62
1501 1552 4.558860 GTGGAATTCAAATACGAAAGCAGC 59.441 41.667 7.93 0.00 0.00 5.25
1503 1554 5.048083 TGGAATTCAAATACGAAAGCAGCTT 60.048 36.000 0.21 0.21 0.00 3.74
1506 1557 5.431420 TTCAAATACGAAAGCAGCTTCAA 57.569 34.783 8.48 0.00 0.00 2.69
1527 1578 5.995282 TCAAGATTCACCGTGTAATTTGAGT 59.005 36.000 0.00 0.00 0.00 3.41
1531 1582 6.475727 AGATTCACCGTGTAATTTGAGTATCG 59.524 38.462 0.00 0.00 38.61 2.92
1532 1583 5.063180 TCACCGTGTAATTTGAGTATCGT 57.937 39.130 0.00 0.00 38.61 3.73
1533 1584 6.193514 TCACCGTGTAATTTGAGTATCGTA 57.806 37.500 0.00 0.00 38.61 3.43
1558 1617 5.713822 ATCTTTGTCCTTTACGTAATCGC 57.286 39.130 9.18 1.28 41.18 4.58
1645 1704 8.744568 ATAAATTTTGTTCAATGGTTTGGTGT 57.255 26.923 0.00 0.00 33.44 4.16
1717 1776 1.212229 GAGGCAGCTGCTCTTTTGC 59.788 57.895 35.82 18.70 41.70 3.68
1729 1788 2.866156 GCTCTTTTGCAGTTTTTGACCC 59.134 45.455 0.00 0.00 0.00 4.46
1730 1789 3.457234 CTCTTTTGCAGTTTTTGACCCC 58.543 45.455 0.00 0.00 0.00 4.95
1731 1790 2.159170 TCTTTTGCAGTTTTTGACCCCG 60.159 45.455 0.00 0.00 0.00 5.73
1732 1791 0.461961 TTTGCAGTTTTTGACCCCGG 59.538 50.000 0.00 0.00 0.00 5.73
1747 1806 2.264480 CGGCCGTCTGGTTGATCA 59.736 61.111 19.50 0.00 37.67 2.92
1812 1871 6.155827 CCGAAGAGAATCATCTTGGATAGTC 58.844 44.000 0.74 0.00 39.63 2.59
1874 1933 0.662077 ATTTTCAAACGGCGGCGTTC 60.662 50.000 43.10 0.00 0.00 3.95
1880 1939 0.041047 AAACGGCGGCGTTCTAAAAC 60.041 50.000 43.10 0.00 0.00 2.43
1902 1993 4.084013 ACATATATTCGCGGTAGCAAAAGC 60.084 41.667 6.13 0.00 45.49 3.51
1956 2047 9.678260 AGTATTTTAATTCTGTGCTTCTGATCT 57.322 29.630 0.00 0.00 0.00 2.75
1961 2052 9.683069 TTTAATTCTGTGCTTCTGATCTTTTTC 57.317 29.630 0.00 0.00 0.00 2.29
1972 2066 7.306457 GCTTCTGATCTTTTTCTTGCTTGTTTC 60.306 37.037 0.00 0.00 0.00 2.78
1994 2088 5.546526 TCAAACCCAATTATTTTCCAGTGC 58.453 37.500 0.00 0.00 0.00 4.40
2000 2094 4.440525 CCAATTATTTTCCAGTGCGCAGAT 60.441 41.667 12.22 0.00 0.00 2.90
2079 2183 7.706607 AGAAGACTTGAAAATTTTAGTGGCAAC 59.293 33.333 10.39 0.00 0.00 4.17
2080 2184 7.112452 AGACTTGAAAATTTTAGTGGCAACT 57.888 32.000 10.39 0.00 40.67 3.16
2083 2187 7.973601 ACTTGAAAATTTTAGTGGCAACTTTG 58.026 30.769 0.00 0.00 37.88 2.77
2093 2197 3.853623 GCAACTTTGCGCTCTCTTT 57.146 47.368 9.73 0.00 45.11 2.52
2094 2198 1.402511 GCAACTTTGCGCTCTCTTTG 58.597 50.000 9.73 6.95 45.11 2.77
2095 2199 1.268743 GCAACTTTGCGCTCTCTTTGT 60.269 47.619 9.73 0.00 45.11 2.83
2096 2200 2.032030 GCAACTTTGCGCTCTCTTTGTA 60.032 45.455 9.73 0.00 45.11 2.41
2097 2201 3.548014 GCAACTTTGCGCTCTCTTTGTAA 60.548 43.478 9.73 0.00 45.11 2.41
2098 2202 3.879932 ACTTTGCGCTCTCTTTGTAAC 57.120 42.857 9.73 0.00 0.00 2.50
2102 2206 4.829064 TTGCGCTCTCTTTGTAACATTT 57.171 36.364 9.73 0.00 0.00 2.32
2186 2290 4.210331 TGGAAGTCTGAGATCGATCATCA 58.790 43.478 26.47 22.39 33.29 3.07
2323 2427 0.035458 GAATGAGCCCTCCCGTATGG 59.965 60.000 0.00 0.00 0.00 2.74
2359 2463 2.362668 CGTATCGCGGGTTTGAATTC 57.637 50.000 6.13 0.00 36.85 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.882888 TCCGGGATGACAATTTTCTATGC 59.117 43.478 0.00 0.00 0.00 3.14
1 2 5.368145 TCTCCGGGATGACAATTTTCTATG 58.632 41.667 0.00 0.00 0.00 2.23
2 3 5.630415 TCTCCGGGATGACAATTTTCTAT 57.370 39.130 0.00 0.00 0.00 1.98
3 4 5.428253 CTTCTCCGGGATGACAATTTTCTA 58.572 41.667 0.00 0.00 0.00 2.10
4 5 4.265073 CTTCTCCGGGATGACAATTTTCT 58.735 43.478 0.00 0.00 0.00 2.52
5 6 3.378427 CCTTCTCCGGGATGACAATTTTC 59.622 47.826 0.00 0.00 0.00 2.29
6 7 3.010138 TCCTTCTCCGGGATGACAATTTT 59.990 43.478 0.00 0.00 0.00 1.82
7 8 2.576191 TCCTTCTCCGGGATGACAATTT 59.424 45.455 0.00 0.00 0.00 1.82
8 9 2.196595 TCCTTCTCCGGGATGACAATT 58.803 47.619 0.00 0.00 0.00 2.32
9 10 1.879575 TCCTTCTCCGGGATGACAAT 58.120 50.000 0.00 0.00 0.00 2.71
10 11 1.651737 TTCCTTCTCCGGGATGACAA 58.348 50.000 0.00 0.00 32.41 3.18
11 12 1.278127 GTTTCCTTCTCCGGGATGACA 59.722 52.381 0.00 0.00 32.41 3.58
12 13 1.278127 TGTTTCCTTCTCCGGGATGAC 59.722 52.381 0.00 0.00 32.41 3.06
13 14 1.651737 TGTTTCCTTCTCCGGGATGA 58.348 50.000 0.00 0.00 32.41 2.92
14 15 2.084546 GTTGTTTCCTTCTCCGGGATG 58.915 52.381 0.00 0.04 32.41 3.51
15 16 1.702957 TGTTGTTTCCTTCTCCGGGAT 59.297 47.619 0.00 0.00 32.41 3.85
16 17 1.071699 CTGTTGTTTCCTTCTCCGGGA 59.928 52.381 0.00 0.00 0.00 5.14
17 18 1.523758 CTGTTGTTTCCTTCTCCGGG 58.476 55.000 0.00 0.00 0.00 5.73
18 19 0.875059 GCTGTTGTTTCCTTCTCCGG 59.125 55.000 0.00 0.00 0.00 5.14
19 20 0.512952 CGCTGTTGTTTCCTTCTCCG 59.487 55.000 0.00 0.00 0.00 4.63
20 21 1.801178 CTCGCTGTTGTTTCCTTCTCC 59.199 52.381 0.00 0.00 0.00 3.71
21 22 1.801178 CCTCGCTGTTGTTTCCTTCTC 59.199 52.381 0.00 0.00 0.00 2.87
22 23 1.543429 CCCTCGCTGTTGTTTCCTTCT 60.543 52.381 0.00 0.00 0.00 2.85
23 24 0.875059 CCCTCGCTGTTGTTTCCTTC 59.125 55.000 0.00 0.00 0.00 3.46
24 25 0.182775 ACCCTCGCTGTTGTTTCCTT 59.817 50.000 0.00 0.00 0.00 3.36
25 26 1.053424 TACCCTCGCTGTTGTTTCCT 58.947 50.000 0.00 0.00 0.00 3.36
26 27 1.886886 TTACCCTCGCTGTTGTTTCC 58.113 50.000 0.00 0.00 0.00 3.13
27 28 2.812011 ACATTACCCTCGCTGTTGTTTC 59.188 45.455 0.00 0.00 0.00 2.78
28 29 2.858745 ACATTACCCTCGCTGTTGTTT 58.141 42.857 0.00 0.00 0.00 2.83
29 30 2.561478 ACATTACCCTCGCTGTTGTT 57.439 45.000 0.00 0.00 0.00 2.83
30 31 2.829720 TCTACATTACCCTCGCTGTTGT 59.170 45.455 0.00 0.00 0.00 3.32
31 32 3.520290 TCTACATTACCCTCGCTGTTG 57.480 47.619 0.00 0.00 0.00 3.33
32 33 3.259876 TGTTCTACATTACCCTCGCTGTT 59.740 43.478 0.00 0.00 0.00 3.16
33 34 2.829720 TGTTCTACATTACCCTCGCTGT 59.170 45.455 0.00 0.00 0.00 4.40
34 35 3.187700 GTGTTCTACATTACCCTCGCTG 58.812 50.000 0.00 0.00 0.00 5.18
35 36 2.167900 GGTGTTCTACATTACCCTCGCT 59.832 50.000 0.00 0.00 0.00 4.93
36 37 2.547826 GGTGTTCTACATTACCCTCGC 58.452 52.381 0.00 0.00 0.00 5.03
41 42 3.994931 ACTGGGGTGTTCTACATTACC 57.005 47.619 0.00 0.00 0.00 2.85
50 51 3.764237 TTGACTAGAACTGGGGTGTTC 57.236 47.619 0.00 0.00 44.67 3.18
51 52 4.461198 CTTTTGACTAGAACTGGGGTGTT 58.539 43.478 0.00 0.00 0.00 3.32
52 53 3.181443 CCTTTTGACTAGAACTGGGGTGT 60.181 47.826 0.00 0.00 0.00 4.16
53 54 3.072476 TCCTTTTGACTAGAACTGGGGTG 59.928 47.826 0.00 0.00 0.00 4.61
54 55 3.323775 TCCTTTTGACTAGAACTGGGGT 58.676 45.455 0.00 0.00 0.00 4.95
55 56 3.328050 ACTCCTTTTGACTAGAACTGGGG 59.672 47.826 0.00 0.00 0.00 4.96
56 57 4.625607 ACTCCTTTTGACTAGAACTGGG 57.374 45.455 0.00 0.00 0.00 4.45
57 58 5.237344 CACAACTCCTTTTGACTAGAACTGG 59.763 44.000 0.00 0.00 0.00 4.00
58 59 5.237344 CCACAACTCCTTTTGACTAGAACTG 59.763 44.000 0.00 0.00 0.00 3.16
59 60 5.130477 TCCACAACTCCTTTTGACTAGAACT 59.870 40.000 0.00 0.00 0.00 3.01
60 61 5.365619 TCCACAACTCCTTTTGACTAGAAC 58.634 41.667 0.00 0.00 0.00 3.01
61 62 5.623956 TCCACAACTCCTTTTGACTAGAA 57.376 39.130 0.00 0.00 0.00 2.10
62 63 5.104693 TGTTCCACAACTCCTTTTGACTAGA 60.105 40.000 0.00 0.00 33.17 2.43
63 64 5.007724 GTGTTCCACAACTCCTTTTGACTAG 59.992 44.000 0.00 0.00 34.08 2.57
64 65 4.879545 GTGTTCCACAACTCCTTTTGACTA 59.120 41.667 0.00 0.00 34.08 2.59
65 66 3.694566 GTGTTCCACAACTCCTTTTGACT 59.305 43.478 0.00 0.00 34.08 3.41
66 67 3.442273 TGTGTTCCACAACTCCTTTTGAC 59.558 43.478 0.00 0.00 41.69 3.18
67 68 3.691575 TGTGTTCCACAACTCCTTTTGA 58.308 40.909 0.00 0.00 41.69 2.69
78 79 1.745232 GTGTGAGGTTGTGTTCCACA 58.255 50.000 0.00 0.00 43.02 4.17
79 80 0.655733 CGTGTGAGGTTGTGTTCCAC 59.344 55.000 0.00 0.00 34.56 4.02
80 81 1.092921 GCGTGTGAGGTTGTGTTCCA 61.093 55.000 0.00 0.00 0.00 3.53
81 82 0.814010 AGCGTGTGAGGTTGTGTTCC 60.814 55.000 0.00 0.00 0.00 3.62
82 83 0.582005 GAGCGTGTGAGGTTGTGTTC 59.418 55.000 0.00 0.00 0.00 3.18
83 84 0.178068 AGAGCGTGTGAGGTTGTGTT 59.822 50.000 0.00 0.00 0.00 3.32
84 85 0.249489 GAGAGCGTGTGAGGTTGTGT 60.249 55.000 0.00 0.00 0.00 3.72
85 86 0.946221 GGAGAGCGTGTGAGGTTGTG 60.946 60.000 0.00 0.00 0.00 3.33
86 87 1.367840 GGAGAGCGTGTGAGGTTGT 59.632 57.895 0.00 0.00 0.00 3.32
87 88 1.734477 CGGAGAGCGTGTGAGGTTG 60.734 63.158 0.00 0.00 0.00 3.77
88 89 1.251527 ATCGGAGAGCGTGTGAGGTT 61.252 55.000 0.00 0.00 43.63 3.50
89 90 1.679305 ATCGGAGAGCGTGTGAGGT 60.679 57.895 0.00 0.00 43.63 3.85
90 91 1.226802 CATCGGAGAGCGTGTGAGG 60.227 63.158 0.00 0.00 43.63 3.86
91 92 0.248417 CTCATCGGAGAGCGTGTGAG 60.248 60.000 0.00 0.00 44.26 3.51
92 93 1.803289 CTCATCGGAGAGCGTGTGA 59.197 57.895 0.00 0.00 44.26 3.58
93 94 4.391539 CTCATCGGAGAGCGTGTG 57.608 61.111 0.00 0.00 44.26 3.82
99 100 4.149346 TCTCGGCTCATCGGAGAG 57.851 61.111 0.00 1.31 43.50 3.20
100 101 0.468648 TAGTCTCGGCTCATCGGAGA 59.531 55.000 0.00 0.00 45.32 3.71
101 102 1.002251 GTTAGTCTCGGCTCATCGGAG 60.002 57.143 0.00 0.00 44.33 4.63
102 103 1.022735 GTTAGTCTCGGCTCATCGGA 58.977 55.000 0.00 0.00 0.00 4.55
103 104 0.030908 GGTTAGTCTCGGCTCATCGG 59.969 60.000 0.00 0.00 0.00 4.18
104 105 0.738975 TGGTTAGTCTCGGCTCATCG 59.261 55.000 0.00 0.00 0.00 3.84
105 106 2.541556 GTTGGTTAGTCTCGGCTCATC 58.458 52.381 0.00 0.00 0.00 2.92
106 107 1.207329 GGTTGGTTAGTCTCGGCTCAT 59.793 52.381 0.00 0.00 0.00 2.90
107 108 0.606604 GGTTGGTTAGTCTCGGCTCA 59.393 55.000 0.00 0.00 0.00 4.26
108 109 0.896226 AGGTTGGTTAGTCTCGGCTC 59.104 55.000 0.00 0.00 0.00 4.70
109 110 1.275573 GAAGGTTGGTTAGTCTCGGCT 59.724 52.381 0.00 0.00 0.00 5.52
110 111 1.723220 GAAGGTTGGTTAGTCTCGGC 58.277 55.000 0.00 0.00 0.00 5.54
111 112 1.271656 ACGAAGGTTGGTTAGTCTCGG 59.728 52.381 0.00 0.00 0.00 4.63
112 113 2.030540 TGACGAAGGTTGGTTAGTCTCG 60.031 50.000 0.00 0.00 34.26 4.04
113 114 3.005578 ACTGACGAAGGTTGGTTAGTCTC 59.994 47.826 0.00 0.00 31.89 3.36
114 115 2.963782 ACTGACGAAGGTTGGTTAGTCT 59.036 45.455 0.00 0.00 31.89 3.24
115 116 3.315418 GACTGACGAAGGTTGGTTAGTC 58.685 50.000 12.00 12.00 42.11 2.59
116 117 2.288030 CGACTGACGAAGGTTGGTTAGT 60.288 50.000 2.57 2.57 45.77 2.24
117 118 2.325761 CGACTGACGAAGGTTGGTTAG 58.674 52.381 0.00 0.00 45.77 2.34
118 119 1.000060 CCGACTGACGAAGGTTGGTTA 60.000 52.381 0.22 0.00 45.77 2.85
119 120 0.249741 CCGACTGACGAAGGTTGGTT 60.250 55.000 0.22 0.00 45.77 3.67
120 121 1.111116 TCCGACTGACGAAGGTTGGT 61.111 55.000 0.22 0.00 45.77 3.67
121 122 0.032952 TTCCGACTGACGAAGGTTGG 59.967 55.000 0.22 0.00 45.77 3.77
122 123 1.137513 GTTCCGACTGACGAAGGTTG 58.862 55.000 0.22 0.00 45.77 3.77
123 124 1.038280 AGTTCCGACTGACGAAGGTT 58.962 50.000 0.22 0.00 45.77 3.50
124 125 2.729692 AGTTCCGACTGACGAAGGT 58.270 52.632 0.22 0.00 45.77 3.50
136 137 3.234630 TTCACCGGCTCCAGTTCCG 62.235 63.158 0.00 0.00 44.89 4.30
137 138 1.671379 GTTCACCGGCTCCAGTTCC 60.671 63.158 0.00 0.00 0.00 3.62
138 139 1.671379 GGTTCACCGGCTCCAGTTC 60.671 63.158 0.00 0.00 0.00 3.01
139 140 1.990160 TTGGTTCACCGGCTCCAGTT 61.990 55.000 0.00 0.00 39.43 3.16
140 141 2.397413 CTTGGTTCACCGGCTCCAGT 62.397 60.000 0.00 0.00 39.43 4.00
141 142 1.672356 CTTGGTTCACCGGCTCCAG 60.672 63.158 0.00 0.00 39.43 3.86
142 143 2.144078 TCTTGGTTCACCGGCTCCA 61.144 57.895 0.00 1.86 39.43 3.86
143 144 1.671379 GTCTTGGTTCACCGGCTCC 60.671 63.158 0.00 0.00 39.43 4.70
144 145 2.027625 CGTCTTGGTTCACCGGCTC 61.028 63.158 0.00 0.00 39.43 4.70
145 146 2.030562 CGTCTTGGTTCACCGGCT 59.969 61.111 0.00 0.00 39.43 5.52
146 147 1.441732 AAACGTCTTGGTTCACCGGC 61.442 55.000 0.00 0.00 39.43 6.13
147 148 1.018910 AAAACGTCTTGGTTCACCGG 58.981 50.000 0.00 0.00 39.43 5.28
148 149 1.399089 ACAAAACGTCTTGGTTCACCG 59.601 47.619 6.56 0.00 39.43 4.94
149 150 3.060978 GACAAAACGTCTTGGTTCACC 57.939 47.619 6.56 0.00 41.81 4.02
159 160 1.268032 CCACAGTGCAGACAAAACGTC 60.268 52.381 0.00 0.00 45.77 4.34
160 161 0.732571 CCACAGTGCAGACAAAACGT 59.267 50.000 0.00 0.00 0.00 3.99
161 162 0.029300 CCCACAGTGCAGACAAAACG 59.971 55.000 0.00 0.00 0.00 3.60
162 163 1.065551 GTCCCACAGTGCAGACAAAAC 59.934 52.381 14.20 0.00 0.00 2.43
163 164 1.340502 TGTCCCACAGTGCAGACAAAA 60.341 47.619 17.82 0.97 36.36 2.44
164 165 0.254462 TGTCCCACAGTGCAGACAAA 59.746 50.000 17.82 1.55 36.36 2.83
165 166 0.254462 TTGTCCCACAGTGCAGACAA 59.746 50.000 23.56 23.56 44.61 3.18
166 167 0.463654 GTTGTCCCACAGTGCAGACA 60.464 55.000 16.71 16.71 37.46 3.41
167 168 1.498865 CGTTGTCCCACAGTGCAGAC 61.499 60.000 12.80 12.80 0.00 3.51
168 169 1.227527 CGTTGTCCCACAGTGCAGA 60.228 57.895 0.00 0.00 0.00 4.26
169 170 2.896801 GCGTTGTCCCACAGTGCAG 61.897 63.158 0.00 0.00 32.55 4.41
170 171 2.899838 GCGTTGTCCCACAGTGCA 60.900 61.111 0.00 0.00 32.55 4.57
171 172 4.012895 CGCGTTGTCCCACAGTGC 62.013 66.667 0.00 0.00 0.00 4.40
172 173 3.345808 CCGCGTTGTCCCACAGTG 61.346 66.667 4.92 0.00 0.00 3.66
173 174 3.802418 GACCGCGTTGTCCCACAGT 62.802 63.158 4.92 0.00 0.00 3.55
174 175 3.041940 GACCGCGTTGTCCCACAG 61.042 66.667 4.92 0.00 0.00 3.66
175 176 4.953868 CGACCGCGTTGTCCCACA 62.954 66.667 4.92 0.00 31.35 4.17
176 177 4.651008 TCGACCGCGTTGTCCCAC 62.651 66.667 4.92 0.00 38.98 4.61
177 178 4.351938 CTCGACCGCGTTGTCCCA 62.352 66.667 4.92 0.00 38.98 4.37
178 179 3.966026 CTCTCGACCGCGTTGTCCC 62.966 68.421 4.92 0.00 38.98 4.46
179 180 2.504244 CTCTCGACCGCGTTGTCC 60.504 66.667 4.92 0.00 38.98 4.02
180 181 1.335697 GAACTCTCGACCGCGTTGTC 61.336 60.000 4.92 5.29 38.98 3.18
181 182 1.371389 GAACTCTCGACCGCGTTGT 60.371 57.895 4.92 0.00 38.98 3.32
182 183 2.087009 GGAACTCTCGACCGCGTTG 61.087 63.158 4.92 0.00 38.98 4.10
183 184 2.257676 GGAACTCTCGACCGCGTT 59.742 61.111 4.92 0.00 38.98 4.84
184 185 2.979197 CTGGAACTCTCGACCGCGT 61.979 63.158 4.92 0.00 38.98 6.01
185 186 2.202492 CTGGAACTCTCGACCGCG 60.202 66.667 0.00 0.00 39.35 6.46
186 187 1.153997 GTCTGGAACTCTCGACCGC 60.154 63.158 0.00 0.00 0.00 5.68
187 188 0.596577 TTGTCTGGAACTCTCGACCG 59.403 55.000 0.00 0.00 0.00 4.79
188 189 2.405172 GTTTGTCTGGAACTCTCGACC 58.595 52.381 0.00 0.00 0.00 4.79
189 190 2.036089 AGGTTTGTCTGGAACTCTCGAC 59.964 50.000 0.00 0.00 0.00 4.20
190 191 2.317040 AGGTTTGTCTGGAACTCTCGA 58.683 47.619 0.00 0.00 0.00 4.04
191 192 2.821991 AGGTTTGTCTGGAACTCTCG 57.178 50.000 0.00 0.00 0.00 4.04
192 193 5.644206 GGAATAAGGTTTGTCTGGAACTCTC 59.356 44.000 0.00 0.00 0.00 3.20
193 194 5.073144 TGGAATAAGGTTTGTCTGGAACTCT 59.927 40.000 0.00 0.00 0.00 3.24
194 195 5.313712 TGGAATAAGGTTTGTCTGGAACTC 58.686 41.667 0.00 0.00 0.00 3.01
195 196 5.319043 TGGAATAAGGTTTGTCTGGAACT 57.681 39.130 0.00 0.00 0.00 3.01
196 197 6.095021 GGTATGGAATAAGGTTTGTCTGGAAC 59.905 42.308 0.00 0.00 0.00 3.62
197 198 6.184789 GGTATGGAATAAGGTTTGTCTGGAA 58.815 40.000 0.00 0.00 0.00 3.53
198 199 5.628200 CGGTATGGAATAAGGTTTGTCTGGA 60.628 44.000 0.00 0.00 0.00 3.86
199 200 4.574828 CGGTATGGAATAAGGTTTGTCTGG 59.425 45.833 0.00 0.00 0.00 3.86
200 201 5.424757 TCGGTATGGAATAAGGTTTGTCTG 58.575 41.667 0.00 0.00 0.00 3.51
201 202 5.687166 TCGGTATGGAATAAGGTTTGTCT 57.313 39.130 0.00 0.00 0.00 3.41
202 203 6.018180 GTCATCGGTATGGAATAAGGTTTGTC 60.018 42.308 0.00 0.00 33.61 3.18
203 204 5.820947 GTCATCGGTATGGAATAAGGTTTGT 59.179 40.000 0.00 0.00 33.61 2.83
204 205 5.050363 CGTCATCGGTATGGAATAAGGTTTG 60.050 44.000 0.00 0.00 33.61 2.93
205 206 5.054477 CGTCATCGGTATGGAATAAGGTTT 58.946 41.667 0.00 0.00 33.61 3.27
206 207 4.342951 TCGTCATCGGTATGGAATAAGGTT 59.657 41.667 0.00 0.00 37.69 3.50
207 208 3.893200 TCGTCATCGGTATGGAATAAGGT 59.107 43.478 0.00 0.00 37.69 3.50
208 209 4.235360 GTCGTCATCGGTATGGAATAAGG 58.765 47.826 0.00 0.00 37.69 2.69
209 210 4.680110 GTGTCGTCATCGGTATGGAATAAG 59.320 45.833 0.00 0.00 37.69 1.73
210 211 4.500205 GGTGTCGTCATCGGTATGGAATAA 60.500 45.833 0.00 0.00 37.69 1.40
211 212 3.005050 GGTGTCGTCATCGGTATGGAATA 59.995 47.826 0.00 0.00 37.69 1.75
212 213 2.223971 GGTGTCGTCATCGGTATGGAAT 60.224 50.000 0.00 0.00 37.69 3.01
213 214 1.135527 GGTGTCGTCATCGGTATGGAA 59.864 52.381 0.00 0.00 37.69 3.53
214 215 0.742505 GGTGTCGTCATCGGTATGGA 59.257 55.000 0.00 0.00 37.69 3.41
215 216 0.458260 TGGTGTCGTCATCGGTATGG 59.542 55.000 0.00 0.00 37.69 2.74
216 217 1.840181 CTGGTGTCGTCATCGGTATG 58.160 55.000 0.00 0.00 37.69 2.39
217 218 0.102481 GCTGGTGTCGTCATCGGTAT 59.898 55.000 3.70 0.00 33.86 2.73
218 219 1.509463 GCTGGTGTCGTCATCGGTA 59.491 57.895 3.70 0.00 33.86 4.02
219 220 2.261671 GCTGGTGTCGTCATCGGT 59.738 61.111 3.70 0.00 33.86 4.69
220 221 2.880879 CGCTGGTGTCGTCATCGG 60.881 66.667 0.00 0.00 37.69 4.18
221 222 2.880879 CCGCTGGTGTCGTCATCG 60.881 66.667 0.00 0.00 38.55 3.84
222 223 1.805945 GACCGCTGGTGTCGTCATC 60.806 63.158 4.94 0.00 35.25 2.92
223 224 2.261671 GACCGCTGGTGTCGTCAT 59.738 61.111 4.94 0.00 35.25 3.06
224 225 3.986006 GGACCGCTGGTGTCGTCA 61.986 66.667 4.94 0.00 35.25 4.35
225 226 4.736896 GGGACCGCTGGTGTCGTC 62.737 72.222 4.94 0.00 35.25 4.20
228 229 4.736896 GTCGGGACCGCTGGTGTC 62.737 72.222 5.75 0.00 35.25 3.67
236 237 2.863346 TTCTGTGGTGTCGGGACCG 61.863 63.158 3.96 3.96 39.07 4.79
237 238 1.301479 GTTCTGTGGTGTCGGGACC 60.301 63.158 0.00 0.00 36.43 4.46
238 239 1.663702 CGTTCTGTGGTGTCGGGAC 60.664 63.158 0.00 0.00 0.00 4.46
239 240 2.732016 CGTTCTGTGGTGTCGGGA 59.268 61.111 0.00 0.00 0.00 5.14
240 241 2.357034 CCGTTCTGTGGTGTCGGG 60.357 66.667 0.00 0.00 37.92 5.14
241 242 2.420043 ACCGTTCTGTGGTGTCGG 59.580 61.111 0.00 0.00 45.53 4.79
246 247 2.897969 AGATAAGTCACCGTTCTGTGGT 59.102 45.455 0.00 0.00 41.47 4.16
247 248 3.056821 TGAGATAAGTCACCGTTCTGTGG 60.057 47.826 0.00 0.00 36.87 4.17
248 249 4.174411 TGAGATAAGTCACCGTTCTGTG 57.826 45.455 0.00 0.00 37.59 3.66
249 250 4.748892 CATGAGATAAGTCACCGTTCTGT 58.251 43.478 0.00 0.00 0.00 3.41
250 251 3.553511 GCATGAGATAAGTCACCGTTCTG 59.446 47.826 0.00 0.00 0.00 3.02
251 252 3.430929 GGCATGAGATAAGTCACCGTTCT 60.431 47.826 0.00 0.00 0.00 3.01
252 253 2.866762 GGCATGAGATAAGTCACCGTTC 59.133 50.000 0.00 0.00 0.00 3.95
253 254 2.420129 GGGCATGAGATAAGTCACCGTT 60.420 50.000 0.00 0.00 0.00 4.44
254 255 1.139058 GGGCATGAGATAAGTCACCGT 59.861 52.381 0.00 0.00 0.00 4.83
255 256 1.541233 GGGGCATGAGATAAGTCACCG 60.541 57.143 0.00 0.00 0.00 4.94
256 257 1.490490 TGGGGCATGAGATAAGTCACC 59.510 52.381 0.00 0.00 0.00 4.02
257 258 3.118261 TCTTGGGGCATGAGATAAGTCAC 60.118 47.826 0.00 0.00 0.00 3.67
258 259 3.114606 TCTTGGGGCATGAGATAAGTCA 58.885 45.455 0.00 0.00 0.00 3.41
259 260 3.135530 ACTCTTGGGGCATGAGATAAGTC 59.864 47.826 0.00 0.00 37.70 3.01
260 261 3.118531 ACTCTTGGGGCATGAGATAAGT 58.881 45.455 0.00 0.00 37.70 2.24
261 262 3.853355 ACTCTTGGGGCATGAGATAAG 57.147 47.619 0.00 0.00 37.70 1.73
262 263 3.523157 TCAACTCTTGGGGCATGAGATAA 59.477 43.478 0.00 0.00 37.70 1.75
263 264 3.114606 TCAACTCTTGGGGCATGAGATA 58.885 45.455 0.00 0.00 37.70 1.98
264 265 1.918262 TCAACTCTTGGGGCATGAGAT 59.082 47.619 0.00 0.00 37.70 2.75
265 266 1.361204 TCAACTCTTGGGGCATGAGA 58.639 50.000 0.00 0.00 37.70 3.27
266 267 2.205022 TTCAACTCTTGGGGCATGAG 57.795 50.000 0.00 0.00 40.17 2.90
267 268 2.673775 TTTCAACTCTTGGGGCATGA 57.326 45.000 0.00 0.00 0.00 3.07
268 269 3.967332 ATTTTCAACTCTTGGGGCATG 57.033 42.857 0.00 0.00 0.00 4.06
269 270 5.104817 CCATAATTTTCAACTCTTGGGGCAT 60.105 40.000 0.00 0.00 0.00 4.40
270 271 4.222588 CCATAATTTTCAACTCTTGGGGCA 59.777 41.667 0.00 0.00 0.00 5.36
271 272 4.758688 CCATAATTTTCAACTCTTGGGGC 58.241 43.478 0.00 0.00 0.00 5.80
272 273 4.467438 AGCCATAATTTTCAACTCTTGGGG 59.533 41.667 0.00 0.00 0.00 4.96
273 274 5.394553 GGAGCCATAATTTTCAACTCTTGGG 60.395 44.000 0.00 0.00 0.00 4.12
274 275 5.394553 GGGAGCCATAATTTTCAACTCTTGG 60.395 44.000 0.00 0.00 0.00 3.61
275 276 5.654497 GGGAGCCATAATTTTCAACTCTTG 58.346 41.667 0.00 0.00 0.00 3.02
276 277 5.921962 GGGAGCCATAATTTTCAACTCTT 57.078 39.130 0.00 0.00 0.00 2.85
577 578 2.338984 CAGTATACCGCCGGCCTC 59.661 66.667 23.46 4.96 0.00 4.70
578 579 3.231736 CCAGTATACCGCCGGCCT 61.232 66.667 23.46 8.01 0.00 5.19
579 580 4.982749 GCCAGTATACCGCCGGCC 62.983 72.222 23.46 5.24 36.73 6.13
580 581 4.230002 TGCCAGTATACCGCCGGC 62.230 66.667 19.07 19.07 43.28 6.13
581 582 2.029073 CTGCCAGTATACCGCCGG 59.971 66.667 0.00 0.00 0.00 6.13
582 583 1.007271 CTCTGCCAGTATACCGCCG 60.007 63.158 9.42 4.39 0.00 6.46
583 584 1.113517 TCCTCTGCCAGTATACCGCC 61.114 60.000 9.42 0.00 0.00 6.13
584 585 0.315568 CTCCTCTGCCAGTATACCGC 59.684 60.000 0.00 2.36 0.00 5.68
585 586 0.962489 CCTCCTCTGCCAGTATACCG 59.038 60.000 0.00 0.00 0.00 4.02
586 587 2.383442 TCCTCCTCTGCCAGTATACC 57.617 55.000 0.00 0.00 0.00 2.73
587 588 3.257127 GTCATCCTCCTCTGCCAGTATAC 59.743 52.174 0.00 0.00 0.00 1.47
588 589 3.501349 GTCATCCTCCTCTGCCAGTATA 58.499 50.000 0.00 0.00 0.00 1.47
589 590 2.324541 GTCATCCTCCTCTGCCAGTAT 58.675 52.381 0.00 0.00 0.00 2.12
590 591 1.781786 GTCATCCTCCTCTGCCAGTA 58.218 55.000 0.00 0.00 0.00 2.74
591 592 1.326213 CGTCATCCTCCTCTGCCAGT 61.326 60.000 0.00 0.00 0.00 4.00
592 593 1.440893 CGTCATCCTCCTCTGCCAG 59.559 63.158 0.00 0.00 0.00 4.85
593 594 2.060383 CCGTCATCCTCCTCTGCCA 61.060 63.158 0.00 0.00 0.00 4.92
594 595 2.060980 ACCGTCATCCTCCTCTGCC 61.061 63.158 0.00 0.00 0.00 4.85
595 596 1.142748 CACCGTCATCCTCCTCTGC 59.857 63.158 0.00 0.00 0.00 4.26
596 597 1.142748 GCACCGTCATCCTCCTCTG 59.857 63.158 0.00 0.00 0.00 3.35
597 598 1.305297 TGCACCGTCATCCTCCTCT 60.305 57.895 0.00 0.00 0.00 3.69
598 599 1.142748 CTGCACCGTCATCCTCCTC 59.857 63.158 0.00 0.00 0.00 3.71
599 600 2.362369 CCTGCACCGTCATCCTCCT 61.362 63.158 0.00 0.00 0.00 3.69
600 601 1.899437 TTCCTGCACCGTCATCCTCC 61.899 60.000 0.00 0.00 0.00 4.30
601 602 0.036388 TTTCCTGCACCGTCATCCTC 60.036 55.000 0.00 0.00 0.00 3.71
602 603 0.400213 TTTTCCTGCACCGTCATCCT 59.600 50.000 0.00 0.00 0.00 3.24
603 604 0.521735 GTTTTCCTGCACCGTCATCC 59.478 55.000 0.00 0.00 0.00 3.51
604 605 0.521735 GGTTTTCCTGCACCGTCATC 59.478 55.000 0.00 0.00 36.94 2.92
605 606 0.893727 GGGTTTTCCTGCACCGTCAT 60.894 55.000 0.00 0.00 40.46 3.06
606 607 1.527380 GGGTTTTCCTGCACCGTCA 60.527 57.895 0.00 0.00 40.46 4.35
607 608 1.228154 AGGGTTTTCCTGCACCGTC 60.228 57.895 0.00 0.00 46.07 4.79
608 609 2.923837 AGGGTTTTCCTGCACCGT 59.076 55.556 0.00 0.00 46.07 4.83
614 615 8.526065 GTCAGAGGTGATCTAGGGTTTTCCTG 62.526 50.000 0.00 0.00 39.65 3.86
615 616 6.573288 GTCAGAGGTGATCTAGGGTTTTCCT 61.573 48.000 0.00 0.00 41.47 3.36
616 617 3.775316 TCAGAGGTGATCTAGGGTTTTCC 59.225 47.826 0.00 0.00 36.10 3.13
617 618 4.468153 AGTCAGAGGTGATCTAGGGTTTTC 59.532 45.833 0.00 0.00 36.10 2.29
618 619 4.430441 AGTCAGAGGTGATCTAGGGTTTT 58.570 43.478 0.00 0.00 36.10 2.43
619 620 4.067944 AGTCAGAGGTGATCTAGGGTTT 57.932 45.455 0.00 0.00 36.10 3.27
620 621 3.767309 AGTCAGAGGTGATCTAGGGTT 57.233 47.619 0.00 0.00 36.10 4.11
621 622 4.448493 CCATAGTCAGAGGTGATCTAGGGT 60.448 50.000 0.00 0.00 35.61 4.34
622 623 4.085733 CCATAGTCAGAGGTGATCTAGGG 58.914 52.174 0.00 0.00 36.10 3.53
623 624 4.085733 CCCATAGTCAGAGGTGATCTAGG 58.914 52.174 0.00 0.00 36.10 3.02
624 625 4.991776 TCCCATAGTCAGAGGTGATCTAG 58.008 47.826 0.00 0.00 36.10 2.43
625 626 5.314573 AGATCCCATAGTCAGAGGTGATCTA 59.685 44.000 0.00 0.00 37.52 1.98
626 627 3.981516 TCCCATAGTCAGAGGTGATCT 57.018 47.619 0.00 0.00 39.56 2.75
627 628 4.220382 CAGATCCCATAGTCAGAGGTGATC 59.780 50.000 0.00 0.00 34.36 2.92
628 629 4.140829 TCAGATCCCATAGTCAGAGGTGAT 60.141 45.833 0.00 0.00 34.36 3.06
629 630 3.205282 TCAGATCCCATAGTCAGAGGTGA 59.795 47.826 0.00 0.00 0.00 4.02
630 631 3.320541 GTCAGATCCCATAGTCAGAGGTG 59.679 52.174 0.00 0.00 0.00 4.00
631 632 3.571590 GTCAGATCCCATAGTCAGAGGT 58.428 50.000 0.00 0.00 0.00 3.85
632 633 2.896685 GGTCAGATCCCATAGTCAGAGG 59.103 54.545 0.00 0.00 0.00 3.69
633 634 2.896685 GGGTCAGATCCCATAGTCAGAG 59.103 54.545 0.00 0.00 46.30 3.35
634 635 2.964209 GGGTCAGATCCCATAGTCAGA 58.036 52.381 0.00 0.00 46.30 3.27
643 644 2.496291 CGGGTACGGGTCAGATCCC 61.496 68.421 0.00 0.00 43.78 3.85
644 645 0.466189 TACGGGTACGGGTCAGATCC 60.466 60.000 0.00 0.00 46.48 3.36
645 646 1.613836 ATACGGGTACGGGTCAGATC 58.386 55.000 0.00 0.00 46.48 2.75
646 647 1.959282 GAATACGGGTACGGGTCAGAT 59.041 52.381 0.00 0.00 46.48 2.90
647 648 1.340893 TGAATACGGGTACGGGTCAGA 60.341 52.381 0.00 0.00 46.48 3.27
648 649 1.105457 TGAATACGGGTACGGGTCAG 58.895 55.000 0.00 0.00 46.48 3.51
649 650 1.779221 ATGAATACGGGTACGGGTCA 58.221 50.000 0.00 0.00 46.48 4.02
650 651 2.896745 AATGAATACGGGTACGGGTC 57.103 50.000 0.00 0.00 46.48 4.46
651 652 3.632643 AAAATGAATACGGGTACGGGT 57.367 42.857 0.00 0.00 46.48 5.28
652 653 5.358922 TCTTAAAATGAATACGGGTACGGG 58.641 41.667 0.00 0.00 46.48 5.28
653 654 6.907206 TTCTTAAAATGAATACGGGTACGG 57.093 37.500 0.00 0.00 46.48 4.02
667 668 9.201989 GGGGGAAGATGACTTTATTCTTAAAAT 57.798 33.333 0.00 0.00 36.39 1.82
668 669 7.338449 CGGGGGAAGATGACTTTATTCTTAAAA 59.662 37.037 0.00 0.00 36.39 1.52
669 670 6.826741 CGGGGGAAGATGACTTTATTCTTAAA 59.173 38.462 0.00 0.00 36.39 1.52
670 671 6.354130 CGGGGGAAGATGACTTTATTCTTAA 58.646 40.000 0.00 0.00 36.39 1.85
671 672 5.686650 GCGGGGGAAGATGACTTTATTCTTA 60.687 44.000 0.00 0.00 36.39 2.10
672 673 4.781934 CGGGGGAAGATGACTTTATTCTT 58.218 43.478 0.00 0.00 36.39 2.52
673 674 3.433740 GCGGGGGAAGATGACTTTATTCT 60.434 47.826 0.00 0.00 36.39 2.40
674 675 2.879026 GCGGGGGAAGATGACTTTATTC 59.121 50.000 0.00 0.00 36.39 1.75
675 676 2.241176 TGCGGGGGAAGATGACTTTATT 59.759 45.455 0.00 0.00 36.39 1.40
676 677 1.843851 TGCGGGGGAAGATGACTTTAT 59.156 47.619 0.00 0.00 36.39 1.40
677 678 1.281419 TGCGGGGGAAGATGACTTTA 58.719 50.000 0.00 0.00 36.39 1.85
678 679 0.404040 TTGCGGGGGAAGATGACTTT 59.596 50.000 0.00 0.00 36.39 2.66
679 680 0.404040 TTTGCGGGGGAAGATGACTT 59.596 50.000 0.00 0.00 39.24 3.01
680 681 0.404040 TTTTGCGGGGGAAGATGACT 59.596 50.000 0.00 0.00 0.00 3.41
681 682 1.253100 TTTTTGCGGGGGAAGATGAC 58.747 50.000 0.00 0.00 0.00 3.06
682 683 3.755810 TTTTTGCGGGGGAAGATGA 57.244 47.368 0.00 0.00 0.00 2.92
733 735 6.539103 AGGGCAGAATTAAAGACGACTTTATC 59.461 38.462 18.33 14.26 44.59 1.75
739 741 3.596214 TCAGGGCAGAATTAAAGACGAC 58.404 45.455 0.00 0.00 0.00 4.34
747 749 4.898861 ACTTTTGGTTTCAGGGCAGAATTA 59.101 37.500 0.00 0.00 0.00 1.40
754 756 2.430694 AGTTGACTTTTGGTTTCAGGGC 59.569 45.455 0.00 0.00 0.00 5.19
759 761 8.194769 TGGAGATTTAAGTTGACTTTTGGTTTC 58.805 33.333 1.20 0.00 37.40 2.78
760 762 8.073467 TGGAGATTTAAGTTGACTTTTGGTTT 57.927 30.769 1.20 0.00 37.40 3.27
761 763 7.654022 TGGAGATTTAAGTTGACTTTTGGTT 57.346 32.000 1.20 0.00 37.40 3.67
914 920 2.352422 GTGGGAGATGCCTGCACA 59.648 61.111 0.00 0.00 36.66 4.57
916 922 3.731728 GGGTGGGAGATGCCTGCA 61.732 66.667 0.00 0.00 36.66 4.41
931 951 4.038080 GTTTGGTTCGCGCAGGGG 62.038 66.667 8.75 0.00 42.39 4.79
1051 1071 3.862124 CGACTTCTTCGGTGCTGG 58.138 61.111 0.00 0.00 44.60 4.85
1212 1232 0.179059 TCTTCTTGTTGCTGTGGCGA 60.179 50.000 0.00 0.00 42.25 5.54
1223 1243 1.344438 TGGCACTGATCGTCTTCTTGT 59.656 47.619 0.00 0.00 0.00 3.16
1313 1360 2.743928 CTGCGTGCTTCCCCAGAC 60.744 66.667 0.00 0.00 0.00 3.51
1450 1501 2.067013 GCACAAGGGAAAGTAGACGTC 58.933 52.381 7.70 7.70 0.00 4.34
1462 1513 3.591835 ACAAACCGCGCACAAGGG 61.592 61.111 8.75 1.66 0.00 3.95
1501 1552 6.898041 TCAAATTACACGGTGAATCTTGAAG 58.102 36.000 16.29 0.00 0.00 3.02
1503 1554 5.995282 ACTCAAATTACACGGTGAATCTTGA 59.005 36.000 16.29 15.21 0.00 3.02
1506 1557 6.475727 CGATACTCAAATTACACGGTGAATCT 59.524 38.462 16.29 0.00 0.00 2.40
1532 1583 8.971321 GCGATTACGTAAAGGACAAAGATAATA 58.029 33.333 12.81 0.00 41.98 0.98
1533 1584 7.306399 CGCGATTACGTAAAGGACAAAGATAAT 60.306 37.037 12.81 0.00 41.98 1.28
1558 1617 3.187842 CACATTATGCCATCATGGAGACG 59.812 47.826 8.30 0.00 40.96 4.18
1645 1704 4.321156 GCAAGCACAGAACATGTAAATCCA 60.321 41.667 0.00 0.00 41.41 3.41
1717 1776 2.914908 CGGCCGGGGTCAAAAACTG 61.915 63.158 20.10 0.00 0.00 3.16
1729 1788 2.511600 GATCAACCAGACGGCCGG 60.512 66.667 31.76 14.36 34.57 6.13
1730 1789 1.811266 CTGATCAACCAGACGGCCG 60.811 63.158 26.86 26.86 36.29 6.13
1731 1790 2.109126 GCTGATCAACCAGACGGCC 61.109 63.158 0.00 0.00 36.29 6.13
1732 1791 0.674895 AAGCTGATCAACCAGACGGC 60.675 55.000 0.00 0.00 36.29 5.68
1747 1806 1.892468 CGCGTACTACGAGAAAAGCT 58.108 50.000 12.87 0.00 46.05 3.74
1874 1933 6.699895 TGCTACCGCGAATATATGTTTTAG 57.300 37.500 8.23 0.00 39.65 1.85
1880 1939 4.394795 GCTTTTGCTACCGCGAATATATG 58.605 43.478 8.23 0.00 39.22 1.78
1942 2033 4.916249 GCAAGAAAAAGATCAGAAGCACAG 59.084 41.667 0.00 0.00 0.00 3.66
1950 2041 7.760131 TTGAAACAAGCAAGAAAAAGATCAG 57.240 32.000 0.00 0.00 0.00 2.90
1954 2045 5.641636 GGGTTTGAAACAAGCAAGAAAAAGA 59.358 36.000 10.53 0.00 0.00 2.52
1955 2046 5.411053 TGGGTTTGAAACAAGCAAGAAAAAG 59.589 36.000 10.53 0.00 0.00 2.27
1956 2047 5.308825 TGGGTTTGAAACAAGCAAGAAAAA 58.691 33.333 10.53 0.00 0.00 1.94
1961 2052 7.495135 AATAATTGGGTTTGAAACAAGCAAG 57.505 32.000 10.53 0.00 0.00 4.01
1972 2066 4.388469 CGCACTGGAAAATAATTGGGTTTG 59.612 41.667 0.00 0.00 0.00 2.93
2010 2111 9.921637 TTAATTAAAAAGAATTTCTCACCGCAT 57.078 25.926 0.00 0.00 37.28 4.73
2050 2154 9.098355 GCCACTAAAATTTTCAAGTCTTCTTTT 57.902 29.630 6.72 0.00 0.00 2.27
2051 2155 8.257306 TGCCACTAAAATTTTCAAGTCTTCTTT 58.743 29.630 6.72 0.00 0.00 2.52
2054 2158 7.706607 AGTTGCCACTAAAATTTTCAAGTCTTC 59.293 33.333 6.72 0.00 0.00 2.87
2057 2161 7.770801 AAGTTGCCACTAAAATTTTCAAGTC 57.229 32.000 6.72 0.00 30.68 3.01
2079 2183 3.878086 TGTTACAAAGAGAGCGCAAAG 57.122 42.857 11.47 0.00 0.00 2.77
2080 2184 4.829064 AATGTTACAAAGAGAGCGCAAA 57.171 36.364 11.47 0.00 0.00 3.68
2083 2187 4.093556 AGCTAAATGTTACAAAGAGAGCGC 59.906 41.667 0.00 0.00 32.70 5.92
2084 2188 5.220491 GGAGCTAAATGTTACAAAGAGAGCG 60.220 44.000 0.00 0.00 32.70 5.03
2085 2189 5.220491 CGGAGCTAAATGTTACAAAGAGAGC 60.220 44.000 0.00 0.00 0.00 4.09
2086 2190 5.869888 ACGGAGCTAAATGTTACAAAGAGAG 59.130 40.000 0.00 0.00 0.00 3.20
2087 2191 5.790593 ACGGAGCTAAATGTTACAAAGAGA 58.209 37.500 0.00 0.00 0.00 3.10
2088 2192 5.220228 CGACGGAGCTAAATGTTACAAAGAG 60.220 44.000 0.00 0.00 0.00 2.85
2089 2193 4.624024 CGACGGAGCTAAATGTTACAAAGA 59.376 41.667 0.00 0.00 0.00 2.52
2090 2194 4.387862 ACGACGGAGCTAAATGTTACAAAG 59.612 41.667 0.00 0.00 0.00 2.77
2091 2195 4.150980 CACGACGGAGCTAAATGTTACAAA 59.849 41.667 0.00 0.00 0.00 2.83
2092 2196 3.676172 CACGACGGAGCTAAATGTTACAA 59.324 43.478 0.00 0.00 0.00 2.41
2093 2197 3.247442 CACGACGGAGCTAAATGTTACA 58.753 45.455 0.00 0.00 0.00 2.41
2094 2198 2.028883 GCACGACGGAGCTAAATGTTAC 59.971 50.000 0.00 0.00 0.00 2.50
2095 2199 2.264813 GCACGACGGAGCTAAATGTTA 58.735 47.619 0.00 0.00 0.00 2.41
2096 2200 1.076332 GCACGACGGAGCTAAATGTT 58.924 50.000 0.00 0.00 0.00 2.71
2097 2201 0.037697 TGCACGACGGAGCTAAATGT 60.038 50.000 14.24 0.00 0.00 2.71
2098 2202 0.647410 CTGCACGACGGAGCTAAATG 59.353 55.000 14.24 0.00 0.00 2.32
2102 2206 2.875485 GACTGCACGACGGAGCTA 59.125 61.111 14.24 2.54 36.28 3.32
2359 2463 4.552365 ATCCGTGCATGGCTCCCG 62.552 66.667 20.86 1.39 0.00 5.14



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.