Multiple sequence alignment - TraesCS7A01G201300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G201300 chr7A 100.000 2815 0 0 1 2815 163298652 163301466 0.000000e+00 5199.0
1 TraesCS7A01G201300 chr7A 84.396 878 90 30 912 1774 163353027 163353872 0.000000e+00 819.0
2 TraesCS7A01G201300 chr7A 90.056 533 41 6 1057 1577 163235054 163235586 0.000000e+00 680.0
3 TraesCS7A01G201300 chr7A 79.849 794 69 49 812 1553 163372301 163373055 1.950000e-136 496.0
4 TraesCS7A01G201300 chr7A 94.268 157 9 0 1794 1950 163353927 163354083 1.010000e-59 241.0
5 TraesCS7A01G201300 chr7A 93.056 144 9 1 650 792 163234547 163234690 2.840000e-50 209.0
6 TraesCS7A01G201300 chr7A 81.900 221 18 7 812 1016 163234757 163234971 1.730000e-37 167.0
7 TraesCS7A01G201300 chr7A 96.842 95 3 0 2721 2815 163306155 163306249 2.900000e-35 159.0
8 TraesCS7A01G201300 chr7A 84.252 127 11 6 872 990 163229519 163229644 6.370000e-22 115.0
9 TraesCS7A01G201300 chr7A 74.146 205 50 3 439 642 122741972 122742174 6.460000e-12 82.4
10 TraesCS7A01G201300 chr7D 91.948 621 39 3 1016 1625 162191031 162191651 0.000000e+00 859.0
11 TraesCS7A01G201300 chr7D 90.602 532 39 4 1057 1577 162130301 162130832 0.000000e+00 695.0
12 TraesCS7A01G201300 chr7D 89.178 499 39 6 1070 1553 162629175 162629673 2.400000e-170 608.0
13 TraesCS7A01G201300 chr7D 89.496 476 35 9 1070 1531 162219335 162219809 3.120000e-164 588.0
14 TraesCS7A01G201300 chr7D 83.538 650 84 11 7 650 162189874 162190506 1.120000e-163 586.0
15 TraesCS7A01G201300 chr7D 87.980 391 21 13 651 1017 162190602 162190990 3.330000e-119 438.0
16 TraesCS7A01G201300 chr7D 80.851 517 59 9 2242 2720 162202287 162202801 1.230000e-98 370.0
17 TraesCS7A01G201300 chr7D 91.571 261 22 0 2460 2720 162193562 162193822 7.410000e-96 361.0
18 TraesCS7A01G201300 chr7D 82.840 338 26 14 1628 1952 162201895 162202213 9.930000e-70 274.0
19 TraesCS7A01G201300 chr7D 91.391 151 12 1 2239 2389 162193376 162193525 3.680000e-49 206.0
20 TraesCS7A01G201300 chr7D 85.427 199 17 5 1737 1924 162193099 162193296 2.210000e-46 196.0
21 TraesCS7A01G201300 chr7D 96.842 95 3 0 2721 2815 8980464 8980370 2.900000e-35 159.0
22 TraesCS7A01G201300 chr7D 96.842 95 3 0 2721 2815 360146029 360145935 2.900000e-35 159.0
23 TraesCS7A01G201300 chr7D 96.842 95 3 0 2721 2815 360151263 360151169 2.900000e-35 159.0
24 TraesCS7A01G201300 chr7B 93.066 548 35 3 1014 1558 124236362 124236909 0.000000e+00 798.0
25 TraesCS7A01G201300 chr7B 90.625 512 35 7 1057 1556 124141300 124141810 0.000000e+00 667.0
26 TraesCS7A01G201300 chr7B 82.581 798 77 39 846 1600 124536332 124537110 0.000000e+00 647.0
27 TraesCS7A01G201300 chr7B 82.768 737 65 36 849 1530 124548554 124549283 4.010000e-168 601.0
28 TraesCS7A01G201300 chr7B 86.740 543 44 19 1057 1587 124360307 124360833 1.880000e-161 579.0
29 TraesCS7A01G201300 chr7B 91.185 363 20 4 1597 1948 124236906 124237267 1.520000e-132 483.0
30 TraesCS7A01G201300 chr7B 88.512 383 22 6 662 1023 124235951 124236332 7.160000e-121 444.0
31 TraesCS7A01G201300 chr7B 83.979 387 55 6 1 383 124235142 124235525 5.730000e-97 364.0
32 TraesCS7A01G201300 chr7B 87.582 153 8 2 1648 1790 124363987 124364138 1.730000e-37 167.0
33 TraesCS7A01G201300 chr7B 76.847 203 23 12 812 1011 124137487 124137668 2.990000e-15 93.5
34 TraesCS7A01G201300 chr7B 100.000 49 0 0 1745 1793 124653686 124653734 1.070000e-14 91.6
35 TraesCS7A01G201300 chr7B 92.857 42 3 0 2659 2700 124337547 124337588 8.420000e-06 62.1
36 TraesCS7A01G201300 chr3B 74.580 417 83 18 176 581 188874392 188873988 8.070000e-36 161.0
37 TraesCS7A01G201300 chr3B 100.000 31 0 0 1983 2013 609333270 609333240 1.090000e-04 58.4
38 TraesCS7A01G201300 chr1B 96.875 96 3 0 2720 2815 592106191 592106096 8.070000e-36 161.0
39 TraesCS7A01G201300 chr1B 92.661 109 7 1 2706 2813 567690061 567689953 3.750000e-34 156.0
40 TraesCS7A01G201300 chrUn 96.842 95 3 0 2721 2815 112590557 112590651 2.900000e-35 159.0
41 TraesCS7A01G201300 chr2D 95.918 98 4 0 2718 2815 3983193 3983096 2.900000e-35 159.0
42 TraesCS7A01G201300 chr1D 96.842 95 3 0 2721 2815 350657023 350657117 2.900000e-35 159.0
43 TraesCS7A01G201300 chr5A 76.786 224 52 0 430 653 585441373 585441150 2.940000e-25 126.0
44 TraesCS7A01G201300 chr5A 100.000 31 0 0 1983 2013 544224366 544224396 1.090000e-04 58.4
45 TraesCS7A01G201300 chr4D 84.932 73 11 0 513 585 466390167 466390239 1.080000e-09 75.0
46 TraesCS7A01G201300 chr6A 79.381 97 19 1 461 557 610294047 610293952 1.810000e-07 67.6
47 TraesCS7A01G201300 chr2B 97.222 36 1 0 1983 2018 724551003 724550968 8.420000e-06 62.1
48 TraesCS7A01G201300 chr4A 100.000 31 0 0 1983 2013 701700169 701700139 1.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G201300 chr7A 163298652 163301466 2814 False 5199.00 5199 100.000000 1 2815 1 chr7A.!!$F3 2814
1 TraesCS7A01G201300 chr7A 163353027 163354083 1056 False 530.00 819 89.332000 912 1950 2 chr7A.!!$F7 1038
2 TraesCS7A01G201300 chr7A 163372301 163373055 754 False 496.00 496 79.849000 812 1553 1 chr7A.!!$F5 741
3 TraesCS7A01G201300 chr7A 163234547 163235586 1039 False 352.00 680 88.337333 650 1577 3 chr7A.!!$F6 927
4 TraesCS7A01G201300 chr7D 162130301 162130832 531 False 695.00 695 90.602000 1057 1577 1 chr7D.!!$F1 520
5 TraesCS7A01G201300 chr7D 162189874 162193822 3948 False 441.00 859 88.642500 7 2720 6 chr7D.!!$F4 2713
6 TraesCS7A01G201300 chr7D 162201895 162202801 906 False 322.00 370 81.845500 1628 2720 2 chr7D.!!$F5 1092
7 TraesCS7A01G201300 chr7B 124536332 124537110 778 False 647.00 647 82.581000 846 1600 1 chr7B.!!$F2 754
8 TraesCS7A01G201300 chr7B 124548554 124549283 729 False 601.00 601 82.768000 849 1530 1 chr7B.!!$F3 681
9 TraesCS7A01G201300 chr7B 124235142 124237267 2125 False 522.25 798 89.185500 1 1948 4 chr7B.!!$F6 1947
10 TraesCS7A01G201300 chr7B 124137487 124141810 4323 False 380.25 667 83.736000 812 1556 2 chr7B.!!$F5 744
11 TraesCS7A01G201300 chr7B 124360307 124364138 3831 False 373.00 579 87.161000 1057 1790 2 chr7B.!!$F7 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 1071 0.179081 GCCGATGGAGAGTACAACCC 60.179 60.0 0.0 0.0 0.0 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2431 11006 0.249826 AAAATGGCGTGGCAAAGTGG 60.25 50.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 5.134339 ACATGATACCCCTAATGACAACCAT 59.866 40.000 0.00 0.00 36.99 3.55
67 69 6.027749 CCATAAAACATGGCTACGTTCTTTC 58.972 40.000 0.00 0.00 31.75 2.62
94 98 9.369672 CTCTACCATAGAAAAATACTCCTAGGT 57.630 37.037 9.08 0.00 33.75 3.08
97 101 7.793036 ACCATAGAAAAATACTCCTAGGTGAC 58.207 38.462 17.66 0.87 0.00 3.67
132 136 3.726517 CCTTTGACGCCACCGCTG 61.727 66.667 0.00 0.00 38.22 5.18
168 172 1.072505 GGCTTTTGGACCGTGGAGA 59.927 57.895 0.00 0.00 0.00 3.71
183 187 3.432051 GAGATGCGGTGGACCTCGG 62.432 68.421 9.24 3.77 0.00 4.63
237 242 7.556275 TCTCATTTTTGTTAGGTTCAGTGTCTT 59.444 33.333 0.00 0.00 0.00 3.01
244 249 5.364446 TGTTAGGTTCAGTGTCTTAGTTGGA 59.636 40.000 0.00 0.00 0.00 3.53
275 280 2.234661 CAGCAACTATGTCCCTCAGTGA 59.765 50.000 0.00 0.00 0.00 3.41
291 296 3.444034 TCAGTGAGAATAACGTCCCTCAG 59.556 47.826 8.68 1.53 36.46 3.35
292 297 2.761208 AGTGAGAATAACGTCCCTCAGG 59.239 50.000 8.68 0.00 36.46 3.86
300 305 5.687166 ATAACGTCCCTCAGGTTTAATCA 57.313 39.130 0.00 0.00 34.82 2.57
306 311 4.080299 GTCCCTCAGGTTTAATCACATCCT 60.080 45.833 0.00 0.00 0.00 3.24
346 351 1.639298 GGAGTGCATGTGAAGGCGTC 61.639 60.000 0.00 0.00 0.00 5.19
352 357 0.247460 CATGTGAAGGCGTCTCTCCA 59.753 55.000 1.41 0.00 0.00 3.86
383 388 2.094078 CGGGAGTCGGTTGGTGTTATAA 60.094 50.000 0.00 0.00 34.75 0.98
384 389 3.264947 GGGAGTCGGTTGGTGTTATAAC 58.735 50.000 8.75 8.75 0.00 1.89
385 390 3.055602 GGGAGTCGGTTGGTGTTATAACT 60.056 47.826 16.33 0.00 0.00 2.24
386 391 4.179298 GGAGTCGGTTGGTGTTATAACTC 58.821 47.826 16.33 12.47 32.96 3.01
387 392 4.322198 GGAGTCGGTTGGTGTTATAACTCA 60.322 45.833 16.33 11.54 34.89 3.41
388 393 5.416271 AGTCGGTTGGTGTTATAACTCAT 57.584 39.130 16.33 0.00 0.00 2.90
389 394 5.416947 AGTCGGTTGGTGTTATAACTCATC 58.583 41.667 16.33 12.39 0.00 2.92
390 395 4.266976 GTCGGTTGGTGTTATAACTCATCG 59.733 45.833 16.33 17.30 0.00 3.84
391 396 3.554324 CGGTTGGTGTTATAACTCATCGG 59.446 47.826 16.33 12.64 0.00 4.18
392 397 4.678574 CGGTTGGTGTTATAACTCATCGGA 60.679 45.833 16.33 0.00 0.00 4.55
393 398 4.809426 GGTTGGTGTTATAACTCATCGGAG 59.191 45.833 16.33 0.00 46.96 4.63
394 399 4.054780 TGGTGTTATAACTCATCGGAGC 57.945 45.455 16.33 4.90 45.42 4.70
395 400 3.704566 TGGTGTTATAACTCATCGGAGCT 59.295 43.478 16.33 0.00 45.42 4.09
396 401 4.891168 TGGTGTTATAACTCATCGGAGCTA 59.109 41.667 16.33 0.00 45.42 3.32
397 402 5.361571 TGGTGTTATAACTCATCGGAGCTAA 59.638 40.000 16.33 0.00 45.42 3.09
398 403 5.690857 GGTGTTATAACTCATCGGAGCTAAC 59.309 44.000 16.33 1.92 45.42 2.34
402 407 7.014326 TGTTATAACTCATCGGAGCTAACTCAT 59.986 37.037 16.33 0.00 45.42 2.90
418 423 7.029563 GCTAACTCATCGGATTTGTTTGAATT 58.970 34.615 13.89 0.00 0.00 2.17
453 461 6.616947 TGTGTTTACAAGTTTGTTCCTTCTG 58.383 36.000 2.46 0.00 42.35 3.02
454 462 6.207810 TGTGTTTACAAGTTTGTTCCTTCTGT 59.792 34.615 2.46 0.00 42.35 3.41
456 464 7.597369 GTGTTTACAAGTTTGTTCCTTCTGTTT 59.403 33.333 2.46 0.00 42.35 2.83
460 468 7.222000 ACAAGTTTGTTCCTTCTGTTTTACA 57.778 32.000 0.00 0.00 38.47 2.41
461 469 7.836842 ACAAGTTTGTTCCTTCTGTTTTACAT 58.163 30.769 0.00 0.00 38.47 2.29
473 481 5.391449 TCTGTTTTACATCTCTCTTCGTCG 58.609 41.667 0.00 0.00 0.00 5.12
475 483 2.846039 TTACATCTCTCTTCGTCGGC 57.154 50.000 0.00 0.00 0.00 5.54
480 488 1.209383 CTCTCTTCGTCGGCGTTGA 59.791 57.895 10.18 8.14 39.49 3.18
497 505 1.078709 TGATTGTTGCTCTGCTACGC 58.921 50.000 0.00 0.00 37.12 4.42
508 516 1.005037 TGCTACGCTGGTCTTGTGG 60.005 57.895 0.00 0.00 0.00 4.17
514 522 2.281761 CTGGTCTTGTGGCGCCTT 60.282 61.111 29.70 0.00 0.00 4.35
515 523 1.003839 CTGGTCTTGTGGCGCCTTA 60.004 57.895 29.70 13.97 0.00 2.69
516 524 1.003839 TGGTCTTGTGGCGCCTTAG 60.004 57.895 29.70 20.74 0.00 2.18
517 525 1.003718 GGTCTTGTGGCGCCTTAGT 60.004 57.895 29.70 0.00 0.00 2.24
528 536 4.275936 GTGGCGCCTTAGTATGATGAATTT 59.724 41.667 29.70 0.00 0.00 1.82
557 565 9.890352 GACTGTCTACTATAATAAGGTTTACCG 57.110 37.037 0.00 0.00 42.08 4.02
559 567 7.661040 TGTCTACTATAATAAGGTTTACCGGC 58.339 38.462 0.00 0.00 42.08 6.13
561 569 5.233083 ACTATAATAAGGTTTACCGGCCC 57.767 43.478 0.00 0.00 42.08 5.80
578 586 2.202932 CCCGATGAGGAAGTGGCG 60.203 66.667 0.00 0.00 45.00 5.69
617 625 3.890128 TCGTCTCGCTCTATTGCTTATG 58.110 45.455 0.00 0.00 0.00 1.90
621 629 3.636764 TCTCGCTCTATTGCTTATGGTCA 59.363 43.478 0.00 0.00 0.00 4.02
626 634 3.664107 TCTATTGCTTATGGTCATCGCC 58.336 45.455 0.00 0.00 0.00 5.54
749 1071 0.179081 GCCGATGGAGAGTACAACCC 60.179 60.000 0.00 0.00 0.00 4.11
764 1086 2.292719 ACAACCCGGTCCTCCTATAAGT 60.293 50.000 0.00 0.00 0.00 2.24
801 1125 2.202690 CGCACGGATCGGCAACTA 60.203 61.111 0.00 0.00 0.00 2.24
802 1126 1.591594 CGCACGGATCGGCAACTAT 60.592 57.895 0.00 0.00 0.00 2.12
803 1127 1.548973 CGCACGGATCGGCAACTATC 61.549 60.000 0.00 0.00 38.03 2.08
804 1128 0.529773 GCACGGATCGGCAACTATCA 60.530 55.000 0.00 0.00 40.42 2.15
805 1129 1.934589 CACGGATCGGCAACTATCAA 58.065 50.000 0.00 0.00 40.42 2.57
806 1130 2.483876 CACGGATCGGCAACTATCAAT 58.516 47.619 0.00 0.00 40.42 2.57
807 1131 2.872245 CACGGATCGGCAACTATCAATT 59.128 45.455 0.00 0.00 40.42 2.32
808 1132 3.059597 CACGGATCGGCAACTATCAATTC 60.060 47.826 0.00 0.00 40.42 2.17
809 1133 2.480419 CGGATCGGCAACTATCAATTCC 59.520 50.000 0.00 0.00 40.42 3.01
810 1134 2.814336 GGATCGGCAACTATCAATTCCC 59.186 50.000 0.00 0.00 40.42 3.97
818 1142 5.163513 GCAACTATCAATTCCCAACAACTG 58.836 41.667 0.00 0.00 0.00 3.16
908 4796 2.125912 CTTCGTGCCAGAGACCGG 60.126 66.667 0.00 0.00 0.00 5.28
1011 4924 3.649981 CTCACCACCTCCTAATCCATCAT 59.350 47.826 0.00 0.00 0.00 2.45
1017 4938 4.829492 CACCTCCTAATCCATCATTTTCCC 59.171 45.833 0.00 0.00 0.00 3.97
1023 4944 2.000290 TCCATCATTTTCCCTCCCCT 58.000 50.000 0.00 0.00 0.00 4.79
1026 4947 2.513738 CCATCATTTTCCCTCCCCTACA 59.486 50.000 0.00 0.00 0.00 2.74
1027 4948 3.435601 CCATCATTTTCCCTCCCCTACAG 60.436 52.174 0.00 0.00 0.00 2.74
1031 4998 3.653122 TTCCCTCCCCTACAGCCCC 62.653 68.421 0.00 0.00 0.00 5.80
1537 5554 0.179275 CTGATTCGTGTTCGTGCGTG 60.179 55.000 0.00 0.00 38.33 5.34
1577 5596 7.825270 AGTAATTTACGGTCCATGTAAATGTGA 59.175 33.333 12.86 3.42 46.42 3.58
1583 5602 2.684881 GTCCATGTAAATGTGAGGCTGG 59.315 50.000 0.00 0.00 0.00 4.85
1587 5606 2.778299 TGTAAATGTGAGGCTGGTGTC 58.222 47.619 0.00 0.00 0.00 3.67
1589 5608 0.396435 AAATGTGAGGCTGGTGTCGA 59.604 50.000 0.00 0.00 0.00 4.20
1600 5619 2.293399 GCTGGTGTCGAAGTCCAAATTT 59.707 45.455 6.07 0.00 0.00 1.82
1731 10241 1.128513 ATACGTACATCATGCGCACG 58.871 50.000 14.90 13.11 40.56 5.34
1800 10345 3.119990 GCTTTGCTGGTAGACGCAATTAA 60.120 43.478 0.00 0.00 44.60 1.40
1880 10425 2.253758 GCTGGACACGCTTTGCTGA 61.254 57.895 0.00 0.00 0.00 4.26
1883 10428 1.394917 CTGGACACGCTTTGCTGATAC 59.605 52.381 0.00 0.00 0.00 2.24
1909 10454 2.994186 GCAATTGGCAATCATCCCTT 57.006 45.000 14.04 0.00 43.97 3.95
1910 10455 3.271055 GCAATTGGCAATCATCCCTTT 57.729 42.857 14.04 0.00 43.97 3.11
1911 10456 4.405116 GCAATTGGCAATCATCCCTTTA 57.595 40.909 14.04 0.00 43.97 1.85
1912 10457 4.964593 GCAATTGGCAATCATCCCTTTAT 58.035 39.130 14.04 0.00 43.97 1.40
1913 10458 6.100404 GCAATTGGCAATCATCCCTTTATA 57.900 37.500 14.04 0.00 43.97 0.98
1914 10459 6.523840 GCAATTGGCAATCATCCCTTTATAA 58.476 36.000 14.04 0.00 43.97 0.98
1915 10460 6.991531 GCAATTGGCAATCATCCCTTTATAAA 59.008 34.615 14.04 0.00 43.97 1.40
1916 10461 7.041848 GCAATTGGCAATCATCCCTTTATAAAC 60.042 37.037 14.04 0.00 43.97 2.01
1917 10462 7.673641 ATTGGCAATCATCCCTTTATAAACA 57.326 32.000 6.96 0.00 0.00 2.83
1918 10463 7.487822 TTGGCAATCATCCCTTTATAAACAA 57.512 32.000 0.00 0.00 0.00 2.83
1919 10464 7.487822 TGGCAATCATCCCTTTATAAACAAA 57.512 32.000 0.00 0.00 0.00 2.83
1920 10465 8.088463 TGGCAATCATCCCTTTATAAACAAAT 57.912 30.769 0.00 0.00 0.00 2.32
1921 10466 9.206690 TGGCAATCATCCCTTTATAAACAAATA 57.793 29.630 0.00 0.00 0.00 1.40
1975 10520 8.313292 ACTCTCTCCATCTCATATTATGAAAGC 58.687 37.037 7.73 0.00 39.11 3.51
1976 10521 7.318893 TCTCTCCATCTCATATTATGAAAGCG 58.681 38.462 7.73 0.00 39.11 4.68
1977 10522 6.997655 TCTCCATCTCATATTATGAAAGCGT 58.002 36.000 7.73 0.00 39.11 5.07
1978 10523 7.445121 TCTCCATCTCATATTATGAAAGCGTT 58.555 34.615 7.73 0.00 39.11 4.84
1979 10524 7.933577 TCTCCATCTCATATTATGAAAGCGTTT 59.066 33.333 7.73 0.00 39.11 3.60
1980 10525 8.450578 TCCATCTCATATTATGAAAGCGTTTT 57.549 30.769 7.73 0.00 39.11 2.43
1981 10526 9.554395 TCCATCTCATATTATGAAAGCGTTTTA 57.446 29.630 7.73 0.00 39.11 1.52
1982 10527 9.599322 CCATCTCATATTATGAAAGCGTTTTAC 57.401 33.333 7.73 0.00 39.11 2.01
1983 10528 9.599322 CATCTCATATTATGAAAGCGTTTTACC 57.401 33.333 7.73 0.00 39.11 2.85
2037 10589 8.937634 TCACTAAAATAATACTCCCTTCGTTC 57.062 34.615 0.00 0.00 0.00 3.95
2038 10590 7.983484 TCACTAAAATAATACTCCCTTCGTTCC 59.017 37.037 0.00 0.00 0.00 3.62
2040 10592 8.491958 ACTAAAATAATACTCCCTTCGTTCCAT 58.508 33.333 0.00 0.00 0.00 3.41
2049 10601 7.850935 ACTCCCTTCGTTCCATATTATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
2050 10602 7.897864 ACTCCCTTCGTTCCATATTATAAGAG 58.102 38.462 0.00 0.00 0.00 2.85
2051 10603 6.698380 TCCCTTCGTTCCATATTATAAGAGC 58.302 40.000 0.00 0.00 0.00 4.09
2052 10604 5.875359 CCCTTCGTTCCATATTATAAGAGCC 59.125 44.000 0.00 0.00 0.00 4.70
2053 10605 6.295916 CCCTTCGTTCCATATTATAAGAGCCT 60.296 42.308 0.00 0.00 0.00 4.58
2054 10606 7.162082 CCTTCGTTCCATATTATAAGAGCCTT 58.838 38.462 0.00 0.00 0.00 4.35
2055 10607 7.661847 CCTTCGTTCCATATTATAAGAGCCTTT 59.338 37.037 0.00 0.00 0.00 3.11
2056 10608 8.974060 TTCGTTCCATATTATAAGAGCCTTTT 57.026 30.769 0.00 0.00 0.00 2.27
2057 10609 8.974060 TCGTTCCATATTATAAGAGCCTTTTT 57.026 30.769 0.00 0.00 0.00 1.94
2083 10635 5.516090 CACCATAGTGTAAAACGCTTTTGT 58.484 37.500 0.00 0.00 39.94 2.83
2084 10636 6.660722 CACCATAGTGTAAAACGCTTTTGTA 58.339 36.000 0.00 0.00 39.94 2.41
2085 10637 7.302524 CACCATAGTGTAAAACGCTTTTGTAT 58.697 34.615 0.00 0.00 39.94 2.29
2086 10638 7.806014 CACCATAGTGTAAAACGCTTTTGTATT 59.194 33.333 0.00 0.00 39.94 1.89
2087 10639 9.001542 ACCATAGTGTAAAACGCTTTTGTATTA 57.998 29.630 0.00 0.00 39.94 0.98
2088 10640 9.269415 CCATAGTGTAAAACGCTTTTGTATTAC 57.731 33.333 0.00 0.00 39.94 1.89
2089 10641 9.814507 CATAGTGTAAAACGCTTTTGTATTACA 57.185 29.630 0.00 0.00 39.94 2.41
2091 10643 7.357303 AGTGTAAAACGCTTTTGTATTACAGG 58.643 34.615 0.00 0.00 34.94 4.00
2092 10644 7.227116 AGTGTAAAACGCTTTTGTATTACAGGA 59.773 33.333 0.00 0.00 34.94 3.86
2093 10645 7.321984 GTGTAAAACGCTTTTGTATTACAGGAC 59.678 37.037 0.00 0.00 34.87 3.85
2094 10646 4.657075 AACGCTTTTGTATTACAGGACG 57.343 40.909 0.00 3.49 0.00 4.79
2095 10647 2.997986 ACGCTTTTGTATTACAGGACGG 59.002 45.455 12.20 2.13 0.00 4.79
2096 10648 3.255725 CGCTTTTGTATTACAGGACGGA 58.744 45.455 0.00 0.00 0.00 4.69
2097 10649 3.869246 CGCTTTTGTATTACAGGACGGAT 59.131 43.478 0.00 0.00 0.00 4.18
2098 10650 4.260212 CGCTTTTGTATTACAGGACGGATG 60.260 45.833 0.00 0.00 0.00 3.51
2099 10651 4.035208 GCTTTTGTATTACAGGACGGATGG 59.965 45.833 0.00 0.00 0.00 3.51
2100 10652 5.423704 TTTTGTATTACAGGACGGATGGA 57.576 39.130 0.00 0.00 0.00 3.41
2101 10653 4.665833 TTGTATTACAGGACGGATGGAG 57.334 45.455 0.00 0.00 0.00 3.86
2102 10654 3.638860 TGTATTACAGGACGGATGGAGT 58.361 45.455 0.00 0.00 0.00 3.85
2103 10655 4.795469 TGTATTACAGGACGGATGGAGTA 58.205 43.478 0.00 0.00 0.00 2.59
2104 10656 4.581824 TGTATTACAGGACGGATGGAGTAC 59.418 45.833 0.00 0.00 0.00 2.73
2105 10657 2.062971 TACAGGACGGATGGAGTACC 57.937 55.000 0.00 0.00 0.00 3.34
2106 10658 0.335361 ACAGGACGGATGGAGTACCT 59.665 55.000 0.00 0.00 37.04 3.08
2107 10659 1.033574 CAGGACGGATGGAGTACCTC 58.966 60.000 0.00 0.00 37.04 3.85
2118 10670 7.781693 ACGGATGGAGTACCTCTTAATTTAGTA 59.218 37.037 0.00 0.00 37.04 1.82
2140 10692 5.941948 AAAGACACTTATTTTGAGACGGG 57.058 39.130 0.00 0.00 0.00 5.28
2153 10706 6.555463 TTTGAGACGGGGAAGTAATCTAAT 57.445 37.500 0.00 0.00 0.00 1.73
2154 10707 7.664552 TTTGAGACGGGGAAGTAATCTAATA 57.335 36.000 0.00 0.00 0.00 0.98
2155 10708 6.645790 TGAGACGGGGAAGTAATCTAATAC 57.354 41.667 0.00 0.00 0.00 1.89
2156 10709 6.371278 TGAGACGGGGAAGTAATCTAATACT 58.629 40.000 0.00 0.00 37.73 2.12
2157 10710 6.489361 TGAGACGGGGAAGTAATCTAATACTC 59.511 42.308 0.00 0.00 35.09 2.59
2158 10711 5.774184 AGACGGGGAAGTAATCTAATACTCC 59.226 44.000 0.00 0.00 35.09 3.85
2159 10712 4.837298 ACGGGGAAGTAATCTAATACTCCC 59.163 45.833 10.81 10.81 39.73 4.30
2160 10713 5.085219 CGGGGAAGTAATCTAATACTCCCT 58.915 45.833 15.36 0.00 40.01 4.20
2161 10714 5.185442 CGGGGAAGTAATCTAATACTCCCTC 59.815 48.000 15.36 2.12 40.01 4.30
2162 10715 5.484644 GGGGAAGTAATCTAATACTCCCTCC 59.515 48.000 15.36 7.87 40.01 4.30
2163 10716 6.324544 GGGAAGTAATCTAATACTCCCTCCT 58.675 44.000 11.50 0.00 38.66 3.69
2164 10717 6.438108 GGGAAGTAATCTAATACTCCCTCCTC 59.562 46.154 11.50 0.00 38.66 3.71
2165 10718 6.438108 GGAAGTAATCTAATACTCCCTCCTCC 59.562 46.154 0.00 0.00 35.09 4.30
2166 10719 5.906254 AGTAATCTAATACTCCCTCCTCCC 58.094 45.833 0.00 0.00 30.26 4.30
2167 10720 2.973983 TCTAATACTCCCTCCTCCCG 57.026 55.000 0.00 0.00 0.00 5.14
2168 10721 2.425818 TCTAATACTCCCTCCTCCCGA 58.574 52.381 0.00 0.00 0.00 5.14
2169 10722 2.787625 TCTAATACTCCCTCCTCCCGAA 59.212 50.000 0.00 0.00 0.00 4.30
2170 10723 2.563039 AATACTCCCTCCTCCCGAAA 57.437 50.000 0.00 0.00 0.00 3.46
2171 10724 2.563039 ATACTCCCTCCTCCCGAAAA 57.437 50.000 0.00 0.00 0.00 2.29
2172 10725 2.330661 TACTCCCTCCTCCCGAAAAA 57.669 50.000 0.00 0.00 0.00 1.94
2187 10740 3.946242 AAAAACTTGCCCCCTCTGT 57.054 47.368 0.00 0.00 0.00 3.41
2189 10742 2.287977 AAAACTTGCCCCCTCTGTAC 57.712 50.000 0.00 0.00 0.00 2.90
2190 10743 1.145571 AAACTTGCCCCCTCTGTACA 58.854 50.000 0.00 0.00 0.00 2.90
2191 10744 1.372501 AACTTGCCCCCTCTGTACAT 58.627 50.000 0.00 0.00 0.00 2.29
2192 10745 1.372501 ACTTGCCCCCTCTGTACATT 58.627 50.000 0.00 0.00 0.00 2.71
2193 10746 1.282157 ACTTGCCCCCTCTGTACATTC 59.718 52.381 0.00 0.00 0.00 2.67
2194 10747 1.281867 CTTGCCCCCTCTGTACATTCA 59.718 52.381 0.00 0.00 0.00 2.57
2195 10748 1.595311 TGCCCCCTCTGTACATTCAT 58.405 50.000 0.00 0.00 0.00 2.57
2196 10749 1.922447 TGCCCCCTCTGTACATTCATT 59.078 47.619 0.00 0.00 0.00 2.57
2197 10750 2.311542 TGCCCCCTCTGTACATTCATTT 59.688 45.455 0.00 0.00 0.00 2.32
2198 10751 3.525609 TGCCCCCTCTGTACATTCATTTA 59.474 43.478 0.00 0.00 0.00 1.40
2199 10752 4.017958 TGCCCCCTCTGTACATTCATTTAA 60.018 41.667 0.00 0.00 0.00 1.52
2200 10753 4.580580 GCCCCCTCTGTACATTCATTTAAG 59.419 45.833 0.00 0.00 0.00 1.85
2201 10754 5.133221 CCCCCTCTGTACATTCATTTAAGG 58.867 45.833 0.00 0.00 0.00 2.69
2202 10755 5.133221 CCCCTCTGTACATTCATTTAAGGG 58.867 45.833 0.00 3.33 40.55 3.95
2203 10756 4.580580 CCCTCTGTACATTCATTTAAGGGC 59.419 45.833 0.00 0.00 34.93 5.19
2204 10757 4.580580 CCTCTGTACATTCATTTAAGGGCC 59.419 45.833 0.00 0.00 0.00 5.80
2205 10758 5.186256 TCTGTACATTCATTTAAGGGCCA 57.814 39.130 6.18 0.00 0.00 5.36
2206 10759 5.575157 TCTGTACATTCATTTAAGGGCCAA 58.425 37.500 6.18 0.00 0.00 4.52
2207 10760 6.013379 TCTGTACATTCATTTAAGGGCCAAA 58.987 36.000 6.18 0.00 0.00 3.28
2208 10761 6.667414 TCTGTACATTCATTTAAGGGCCAAAT 59.333 34.615 6.18 0.33 0.00 2.32
2209 10762 7.180051 TCTGTACATTCATTTAAGGGCCAAATT 59.820 33.333 6.18 0.00 0.00 1.82
2210 10763 7.684529 TGTACATTCATTTAAGGGCCAAATTT 58.315 30.769 6.18 0.00 0.00 1.82
2211 10764 7.605691 TGTACATTCATTTAAGGGCCAAATTTG 59.394 33.333 11.40 11.40 0.00 2.32
2212 10765 6.777782 ACATTCATTTAAGGGCCAAATTTGA 58.222 32.000 19.86 0.00 0.00 2.69
2213 10766 6.880529 ACATTCATTTAAGGGCCAAATTTGAG 59.119 34.615 19.86 10.54 0.00 3.02
2214 10767 6.678568 TTCATTTAAGGGCCAAATTTGAGA 57.321 33.333 19.86 0.00 0.00 3.27
2215 10768 6.036577 TCATTTAAGGGCCAAATTTGAGAC 57.963 37.500 19.86 11.37 0.00 3.36
2216 10769 5.541868 TCATTTAAGGGCCAAATTTGAGACA 59.458 36.000 19.86 0.00 0.00 3.41
2217 10770 5.878406 TTTAAGGGCCAAATTTGAGACAA 57.122 34.783 19.86 3.28 0.00 3.18
2218 10771 5.467035 TTAAGGGCCAAATTTGAGACAAG 57.533 39.130 19.86 2.75 0.00 3.16
2219 10772 3.243359 AGGGCCAAATTTGAGACAAGA 57.757 42.857 19.86 0.00 0.00 3.02
2220 10773 3.782992 AGGGCCAAATTTGAGACAAGAT 58.217 40.909 19.86 0.00 0.00 2.40
2221 10774 4.162651 AGGGCCAAATTTGAGACAAGATT 58.837 39.130 19.86 0.00 0.00 2.40
2222 10775 4.594491 AGGGCCAAATTTGAGACAAGATTT 59.406 37.500 19.86 0.00 0.00 2.17
2223 10776 5.072193 AGGGCCAAATTTGAGACAAGATTTT 59.928 36.000 19.86 0.00 0.00 1.82
2224 10777 5.764686 GGGCCAAATTTGAGACAAGATTTTT 59.235 36.000 19.86 0.00 0.00 1.94
2257 10810 8.699283 AAGGAGTACGTCTGATATTTGTTTAC 57.301 34.615 0.00 0.00 0.00 2.01
2259 10812 8.308931 AGGAGTACGTCTGATATTTGTTTACAA 58.691 33.333 0.00 0.00 0.00 2.41
2304 10857 5.895636 TGTGTAATTCATTTGCTGGTAGG 57.104 39.130 0.00 0.00 0.00 3.18
2308 10861 1.164411 TTCATTTGCTGGTAGGCACG 58.836 50.000 0.00 0.00 42.27 5.34
2389 10964 6.265196 ACAAAACATTTAGCTGAGTGATCCAA 59.735 34.615 8.04 0.00 0.00 3.53
2391 10966 6.446781 AACATTTAGCTGAGTGATCCAATG 57.553 37.500 8.04 0.00 0.00 2.82
2428 11003 8.844244 TCGATATAAACTTTACTAGAGGGTGAC 58.156 37.037 0.00 0.00 0.00 3.67
2431 11006 4.886496 AACTTTACTAGAGGGTGACACC 57.114 45.455 16.86 16.86 37.60 4.16
2444 11019 3.194272 GACACCCACTTTGCCACGC 62.194 63.158 0.00 0.00 0.00 5.34
2445 11020 3.977244 CACCCACTTTGCCACGCC 61.977 66.667 0.00 0.00 0.00 5.68
2446 11021 4.514585 ACCCACTTTGCCACGCCA 62.515 61.111 0.00 0.00 0.00 5.69
2450 11025 0.249826 CCACTTTGCCACGCCATTTT 60.250 50.000 0.00 0.00 0.00 1.82
2454 11029 0.179000 TTTGCCACGCCATTTTTGGT 59.821 45.000 0.00 0.00 32.50 3.67
2455 11030 0.179000 TTGCCACGCCATTTTTGGTT 59.821 45.000 0.00 0.00 32.50 3.67
2456 11031 0.179000 TGCCACGCCATTTTTGGTTT 59.821 45.000 0.00 0.00 32.50 3.27
2457 11032 0.585838 GCCACGCCATTTTTGGTTTG 59.414 50.000 0.00 0.00 32.50 2.93
2475 11065 4.762251 GGTTTGATTAGAGGTGAGCACTTT 59.238 41.667 0.16 0.00 0.00 2.66
2524 11114 7.889469 ACTAAATGCACTGAAAATGAAGACAT 58.111 30.769 0.00 0.00 38.50 3.06
2527 11117 5.771153 TGCACTGAAAATGAAGACATGAA 57.229 34.783 0.00 0.00 36.79 2.57
2543 11133 7.571080 AGACATGAAAATTTGCCAAAAATGT 57.429 28.000 0.00 0.00 28.86 2.71
2615 11205 3.719173 TTTGGTTCGGTGTTTTCATCC 57.281 42.857 0.00 0.00 0.00 3.51
2619 11209 3.181442 TGGTTCGGTGTTTTCATCCCTAA 60.181 43.478 0.00 0.00 0.00 2.69
2632 11223 5.621197 TCATCCCTAATTGTTTGTGTTCG 57.379 39.130 0.00 0.00 0.00 3.95
2641 11232 5.560966 ATTGTTTGTGTTCGGATGTATCC 57.439 39.130 0.63 0.63 43.65 2.59
2651 11242 2.124903 CGGATGTATCCTCGGTTTTCG 58.875 52.381 9.11 0.00 44.93 3.46
2664 11255 5.409214 CCTCGGTTTTCGTCCTAAATAAACA 59.591 40.000 0.00 0.00 40.32 2.83
2685 11276 8.537728 AAACATAATTGACCATCACACCATAT 57.462 30.769 0.00 0.00 0.00 1.78
2703 11294 8.055181 ACACCATATACATTGAAATGGACTTCT 58.945 33.333 17.51 0.00 41.20 2.85
2720 11311 8.024145 TGGACTTCTCTTTTCTCTAACTTTCT 57.976 34.615 0.00 0.00 0.00 2.52
2721 11312 7.928706 TGGACTTCTCTTTTCTCTAACTTTCTG 59.071 37.037 0.00 0.00 0.00 3.02
2722 11313 7.929245 GGACTTCTCTTTTCTCTAACTTTCTGT 59.071 37.037 0.00 0.00 0.00 3.41
2723 11314 9.320352 GACTTCTCTTTTCTCTAACTTTCTGTT 57.680 33.333 0.00 0.00 42.31 3.16
2737 11328 6.847421 ACTTTCTGTTAGACGTATTAGGGT 57.153 37.500 0.00 0.00 0.00 4.34
2738 11329 7.237209 ACTTTCTGTTAGACGTATTAGGGTT 57.763 36.000 0.00 0.00 0.00 4.11
2739 11330 7.674120 ACTTTCTGTTAGACGTATTAGGGTTT 58.326 34.615 0.00 0.00 0.00 3.27
2740 11331 7.601508 ACTTTCTGTTAGACGTATTAGGGTTTG 59.398 37.037 0.00 0.00 0.00 2.93
2741 11332 5.969423 TCTGTTAGACGTATTAGGGTTTGG 58.031 41.667 0.00 0.00 0.00 3.28
2742 11333 5.716228 TCTGTTAGACGTATTAGGGTTTGGA 59.284 40.000 0.00 0.00 0.00 3.53
2743 11334 6.211184 TCTGTTAGACGTATTAGGGTTTGGAA 59.789 38.462 0.00 0.00 0.00 3.53
2744 11335 6.165577 TGTTAGACGTATTAGGGTTTGGAAC 58.834 40.000 0.00 0.00 0.00 3.62
2745 11336 4.895668 AGACGTATTAGGGTTTGGAACA 57.104 40.909 0.00 0.00 0.00 3.18
2758 11349 2.325583 TGGAACAATGCTCGATACCC 57.674 50.000 0.00 0.00 31.92 3.69
2759 11350 1.837439 TGGAACAATGCTCGATACCCT 59.163 47.619 0.00 0.00 31.92 4.34
2760 11351 2.238646 TGGAACAATGCTCGATACCCTT 59.761 45.455 0.00 0.00 31.92 3.95
2761 11352 2.614057 GGAACAATGCTCGATACCCTTG 59.386 50.000 0.00 0.00 0.00 3.61
2762 11353 2.332063 ACAATGCTCGATACCCTTGG 57.668 50.000 0.00 0.00 0.00 3.61
2763 11354 1.837439 ACAATGCTCGATACCCTTGGA 59.163 47.619 0.00 0.00 0.00 3.53
2764 11355 2.158900 ACAATGCTCGATACCCTTGGAG 60.159 50.000 0.00 0.00 0.00 3.86
2765 11356 1.051812 ATGCTCGATACCCTTGGAGG 58.948 55.000 0.00 0.00 34.30 4.30
2774 11365 2.584608 CCTTGGAGGGTACGGCTG 59.415 66.667 0.00 0.00 0.00 4.85
2775 11366 2.291043 CCTTGGAGGGTACGGCTGT 61.291 63.158 2.42 2.42 0.00 4.40
2776 11367 1.218316 CTTGGAGGGTACGGCTGTC 59.782 63.158 0.00 0.00 0.00 3.51
2777 11368 1.534476 TTGGAGGGTACGGCTGTCA 60.534 57.895 0.00 0.00 0.00 3.58
2778 11369 0.907704 TTGGAGGGTACGGCTGTCAT 60.908 55.000 0.00 0.00 0.00 3.06
2779 11370 0.032912 TGGAGGGTACGGCTGTCATA 60.033 55.000 0.00 0.00 0.00 2.15
2780 11371 1.339097 GGAGGGTACGGCTGTCATAT 58.661 55.000 0.00 0.00 0.00 1.78
2781 11372 2.158430 TGGAGGGTACGGCTGTCATATA 60.158 50.000 0.00 0.00 0.00 0.86
2782 11373 3.097614 GGAGGGTACGGCTGTCATATAT 58.902 50.000 0.00 0.00 0.00 0.86
2783 11374 3.514309 GGAGGGTACGGCTGTCATATATT 59.486 47.826 0.00 0.00 0.00 1.28
2784 11375 4.020485 GGAGGGTACGGCTGTCATATATTT 60.020 45.833 0.00 0.00 0.00 1.40
2785 11376 4.894784 AGGGTACGGCTGTCATATATTTG 58.105 43.478 0.00 0.00 0.00 2.32
2786 11377 4.347000 AGGGTACGGCTGTCATATATTTGT 59.653 41.667 0.00 0.00 0.00 2.83
2787 11378 5.541101 AGGGTACGGCTGTCATATATTTGTA 59.459 40.000 0.00 0.00 0.00 2.41
2788 11379 6.042322 AGGGTACGGCTGTCATATATTTGTAA 59.958 38.462 0.00 0.00 0.00 2.41
2789 11380 6.367969 GGGTACGGCTGTCATATATTTGTAAG 59.632 42.308 0.00 0.00 0.00 2.34
2790 11381 7.149973 GGTACGGCTGTCATATATTTGTAAGA 58.850 38.462 0.00 0.00 0.00 2.10
2791 11382 7.328737 GGTACGGCTGTCATATATTTGTAAGAG 59.671 40.741 0.00 0.00 0.00 2.85
2792 11383 6.223852 ACGGCTGTCATATATTTGTAAGAGG 58.776 40.000 0.00 0.00 0.00 3.69
2793 11384 5.639506 CGGCTGTCATATATTTGTAAGAGGG 59.360 44.000 0.00 0.00 0.00 4.30
2794 11385 6.518369 CGGCTGTCATATATTTGTAAGAGGGA 60.518 42.308 0.00 0.00 0.00 4.20
2795 11386 7.224297 GGCTGTCATATATTTGTAAGAGGGAA 58.776 38.462 0.00 0.00 0.00 3.97
2796 11387 7.173390 GGCTGTCATATATTTGTAAGAGGGAAC 59.827 40.741 0.00 0.00 0.00 3.62
2814 11405 6.016213 GGGAACCGTACAAATACAAATTGT 57.984 37.500 3.43 3.43 40.86 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.606456 GGTATCATGTCTTTCTTTGACAACCTA 59.394 37.037 0.66 0.00 45.82 3.08
46 47 5.310451 AGGAAAGAACGTAGCCATGTTTTA 58.690 37.500 0.00 0.00 33.95 1.52
67 69 8.808092 CCTAGGAGTATTTTTCTATGGTAGAGG 58.192 40.741 1.05 0.00 35.96 3.69
97 101 4.871933 AAGGGCAAATGACAAAACCTAG 57.128 40.909 0.00 0.00 0.00 3.02
109 113 1.665442 GTGGCGTCAAAGGGCAAAT 59.335 52.632 0.00 0.00 40.19 2.32
153 157 0.953471 CGCATCTCCACGGTCCAAAA 60.953 55.000 0.00 0.00 0.00 2.44
198 203 4.851639 AAAATGAGAGCATGGTACCTCT 57.148 40.909 14.36 7.32 40.93 3.69
207 212 6.491403 ACTGAACCTAACAAAAATGAGAGCAT 59.509 34.615 0.00 0.00 35.92 3.79
208 213 5.827797 ACTGAACCTAACAAAAATGAGAGCA 59.172 36.000 0.00 0.00 0.00 4.26
237 242 1.134401 GCTGCCACATAGCTCCAACTA 60.134 52.381 0.00 0.00 38.14 2.24
244 249 2.092753 ACATAGTTGCTGCCACATAGCT 60.093 45.455 6.63 0.00 41.66 3.32
275 280 5.750352 TTAAACCTGAGGGACGTTATTCT 57.250 39.130 2.38 0.00 36.25 2.40
346 351 2.329690 CGCGAGTCCGATGGAGAG 59.670 66.667 0.00 0.00 38.22 3.20
373 378 3.704566 AGCTCCGATGAGTTATAACACCA 59.295 43.478 17.65 14.18 40.95 4.17
383 388 2.292016 CGATGAGTTAGCTCCGATGAGT 59.708 50.000 3.94 0.00 40.95 3.41
384 389 2.351253 CCGATGAGTTAGCTCCGATGAG 60.351 54.545 3.94 0.00 40.95 2.90
385 390 1.609072 CCGATGAGTTAGCTCCGATGA 59.391 52.381 3.94 0.00 40.95 2.92
386 391 1.609072 TCCGATGAGTTAGCTCCGATG 59.391 52.381 3.94 0.00 40.95 3.84
387 392 1.982660 TCCGATGAGTTAGCTCCGAT 58.017 50.000 3.94 0.00 40.95 4.18
388 393 1.982660 ATCCGATGAGTTAGCTCCGA 58.017 50.000 3.94 0.00 40.95 4.55
389 394 2.797156 CAAATCCGATGAGTTAGCTCCG 59.203 50.000 3.94 1.47 40.95 4.63
390 395 3.798202 ACAAATCCGATGAGTTAGCTCC 58.202 45.455 3.94 0.00 40.95 4.70
391 396 5.351465 TCAAACAAATCCGATGAGTTAGCTC 59.649 40.000 0.00 0.00 41.97 4.09
392 397 5.245531 TCAAACAAATCCGATGAGTTAGCT 58.754 37.500 0.00 0.00 0.00 3.32
393 398 5.545658 TCAAACAAATCCGATGAGTTAGC 57.454 39.130 0.00 0.00 0.00 3.09
394 399 8.970691 AAATTCAAACAAATCCGATGAGTTAG 57.029 30.769 0.00 0.00 0.00 2.34
396 401 8.576442 ACTAAATTCAAACAAATCCGATGAGTT 58.424 29.630 0.00 0.00 0.00 3.01
397 402 8.110860 ACTAAATTCAAACAAATCCGATGAGT 57.889 30.769 0.00 0.00 0.00 3.41
398 403 8.970691 AACTAAATTCAAACAAATCCGATGAG 57.029 30.769 0.00 0.00 0.00 2.90
439 447 7.775561 AGAGATGTAAAACAGAAGGAACAAACT 59.224 33.333 0.00 0.00 0.00 2.66
440 448 7.931275 AGAGATGTAAAACAGAAGGAACAAAC 58.069 34.615 0.00 0.00 0.00 2.93
445 453 6.868864 CGAAGAGAGATGTAAAACAGAAGGAA 59.131 38.462 0.00 0.00 0.00 3.36
453 461 3.303760 GCCGACGAAGAGAGATGTAAAAC 59.696 47.826 0.00 0.00 0.00 2.43
454 462 3.508762 GCCGACGAAGAGAGATGTAAAA 58.491 45.455 0.00 0.00 0.00 1.52
456 464 1.063616 CGCCGACGAAGAGAGATGTAA 59.936 52.381 0.00 0.00 43.93 2.41
460 468 0.179161 CAACGCCGACGAAGAGAGAT 60.179 55.000 0.00 0.00 43.93 2.75
461 469 1.209383 CAACGCCGACGAAGAGAGA 59.791 57.895 0.00 0.00 43.93 3.10
473 481 0.730494 GCAGAGCAACAATCAACGCC 60.730 55.000 0.00 0.00 0.00 5.68
475 483 2.472886 CGTAGCAGAGCAACAATCAACG 60.473 50.000 0.00 0.00 0.00 4.10
497 505 1.003839 TAAGGCGCCACAAGACCAG 60.004 57.895 31.54 0.00 0.00 4.00
508 516 5.466728 TCAGAAATTCATCATACTAAGGCGC 59.533 40.000 0.00 0.00 0.00 6.53
512 520 9.814899 AGACAGTCAGAAATTCATCATACTAAG 57.185 33.333 2.66 0.00 0.00 2.18
515 523 8.976353 AGTAGACAGTCAGAAATTCATCATACT 58.024 33.333 2.66 0.00 0.00 2.12
557 565 3.090532 ACTTCCTCATCGGGGGCC 61.091 66.667 0.00 0.00 0.00 5.80
559 567 2.911143 CCACTTCCTCATCGGGGG 59.089 66.667 0.00 0.00 0.00 5.40
561 569 2.032860 ATCGCCACTTCCTCATCGGG 62.033 60.000 0.00 0.00 0.00 5.14
565 573 0.179100 CGTCATCGCCACTTCCTCAT 60.179 55.000 0.00 0.00 0.00 2.90
569 577 0.669318 TTGTCGTCATCGCCACTTCC 60.669 55.000 0.00 0.00 36.96 3.46
578 586 2.094258 ACGAATGCATGTTGTCGTCATC 59.906 45.455 16.35 0.00 42.74 2.92
617 625 0.676466 TGAACCATGTGGCGATGACC 60.676 55.000 0.00 0.00 39.32 4.02
621 629 0.255604 TCCATGAACCATGTGGCGAT 59.744 50.000 0.00 0.00 39.94 4.58
626 634 2.495155 TCAGGTCCATGAACCATGTG 57.505 50.000 3.09 0.00 42.12 3.21
776 1100 2.584970 GATCCGTGCGGCGATCAA 60.585 61.111 12.98 0.00 44.77 2.57
798 1122 5.181245 CGTTCAGTTGTTGGGAATTGATAGT 59.819 40.000 0.00 0.00 0.00 2.12
799 1123 5.181245 ACGTTCAGTTGTTGGGAATTGATAG 59.819 40.000 0.00 0.00 0.00 2.08
800 1124 5.049060 CACGTTCAGTTGTTGGGAATTGATA 60.049 40.000 0.00 0.00 0.00 2.15
801 1125 3.888930 ACGTTCAGTTGTTGGGAATTGAT 59.111 39.130 0.00 0.00 0.00 2.57
802 1126 3.066064 CACGTTCAGTTGTTGGGAATTGA 59.934 43.478 0.00 0.00 0.00 2.57
803 1127 3.371168 CACGTTCAGTTGTTGGGAATTG 58.629 45.455 0.00 0.00 0.00 2.32
804 1128 2.223711 GCACGTTCAGTTGTTGGGAATT 60.224 45.455 0.00 0.00 0.00 2.17
805 1129 1.336755 GCACGTTCAGTTGTTGGGAAT 59.663 47.619 0.00 0.00 0.00 3.01
806 1130 0.736053 GCACGTTCAGTTGTTGGGAA 59.264 50.000 0.00 0.00 0.00 3.97
807 1131 1.433053 CGCACGTTCAGTTGTTGGGA 61.433 55.000 0.00 0.00 0.00 4.37
808 1132 1.010125 CGCACGTTCAGTTGTTGGG 60.010 57.895 0.00 0.00 0.00 4.12
809 1133 1.010125 CCGCACGTTCAGTTGTTGG 60.010 57.895 0.00 0.00 0.00 3.77
810 1134 1.010125 CCCGCACGTTCAGTTGTTG 60.010 57.895 0.00 0.00 0.00 3.33
837 4718 0.036388 CGATGTGGTGGCTGGTACTT 60.036 55.000 0.00 0.00 0.00 2.24
908 4796 1.328279 CTTGGTGGGGTGTTTCTTCC 58.672 55.000 0.00 0.00 0.00 3.46
1011 4924 1.212250 GGGCTGTAGGGGAGGGAAAA 61.212 60.000 0.00 0.00 0.00 2.29
1017 4938 3.155167 GACGGGGCTGTAGGGGAG 61.155 72.222 0.00 0.00 0.00 4.30
1255 5258 3.717400 GTAGAAGATGGTCATCTGCGA 57.283 47.619 13.49 6.02 46.09 5.10
1537 5554 6.437094 CGTAAATTACTCAGGCTACTCTACC 58.563 44.000 1.42 0.00 0.00 3.18
1577 5596 1.407656 TTGGACTTCGACACCAGCCT 61.408 55.000 4.92 0.00 35.08 4.58
1583 5602 4.738252 GGTCAAAAATTTGGACTTCGACAC 59.262 41.667 12.47 0.00 38.66 3.67
1587 5606 4.048504 GTGGGTCAAAAATTTGGACTTCG 58.951 43.478 12.47 0.00 38.66 3.79
1589 5608 4.202111 CGAGTGGGTCAAAAATTTGGACTT 60.202 41.667 12.47 0.00 38.66 3.01
1600 5619 0.534203 GAACAGGCGAGTGGGTCAAA 60.534 55.000 0.00 0.00 0.00 2.69
1666 10166 6.097696 TCAATTTGCCATGATCAGTTCATCAT 59.902 34.615 0.09 0.00 43.40 2.45
1800 10345 3.188460 AGAAATGAATTACGCACGCTTGT 59.812 39.130 0.00 0.00 0.00 3.16
1880 10425 0.610509 TGCCAATTGCCGGTGTGTAT 60.611 50.000 1.90 0.00 40.16 2.29
1883 10428 0.737019 GATTGCCAATTGCCGGTGTG 60.737 55.000 1.90 0.00 40.16 3.82
1949 10494 8.313292 GCTTTCATAATATGAGATGGAGAGAGT 58.687 37.037 2.98 0.00 40.94 3.24
1950 10495 7.488792 CGCTTTCATAATATGAGATGGAGAGAG 59.511 40.741 2.98 0.00 40.94 3.20
1951 10496 7.039434 ACGCTTTCATAATATGAGATGGAGAGA 60.039 37.037 2.98 0.00 40.94 3.10
1952 10497 7.095910 ACGCTTTCATAATATGAGATGGAGAG 58.904 38.462 2.98 3.50 40.94 3.20
1953 10498 6.997655 ACGCTTTCATAATATGAGATGGAGA 58.002 36.000 2.98 0.00 40.94 3.71
1954 10499 7.664082 AACGCTTTCATAATATGAGATGGAG 57.336 36.000 2.98 0.71 40.94 3.86
1955 10500 8.450578 AAAACGCTTTCATAATATGAGATGGA 57.549 30.769 2.98 0.00 40.94 3.41
1956 10501 9.599322 GTAAAACGCTTTCATAATATGAGATGG 57.401 33.333 2.98 0.00 40.94 3.51
1957 10502 9.599322 GGTAAAACGCTTTCATAATATGAGATG 57.401 33.333 2.98 0.12 40.94 2.90
1958 10503 9.561069 AGGTAAAACGCTTTCATAATATGAGAT 57.439 29.630 2.98 0.00 40.94 2.75
1959 10504 8.958119 AGGTAAAACGCTTTCATAATATGAGA 57.042 30.769 2.98 0.00 40.94 3.27
1961 10506 9.781834 CAAAGGTAAAACGCTTTCATAATATGA 57.218 29.630 0.00 0.00 37.55 2.15
1962 10507 9.567848 ACAAAGGTAAAACGCTTTCATAATATG 57.432 29.630 0.00 0.00 0.00 1.78
1965 10510 9.968870 TTTACAAAGGTAAAACGCTTTCATAAT 57.031 25.926 0.00 0.00 44.30 1.28
2061 10613 5.761165 ACAAAAGCGTTTTACACTATGGT 57.239 34.783 0.00 0.00 0.00 3.55
2062 10614 9.269415 GTAATACAAAAGCGTTTTACACTATGG 57.731 33.333 0.00 0.00 35.00 2.74
2063 10615 9.814507 TGTAATACAAAAGCGTTTTACACTATG 57.185 29.630 0.00 0.00 37.95 2.23
2065 10617 8.497554 CCTGTAATACAAAAGCGTTTTACACTA 58.502 33.333 0.00 0.00 37.95 2.74
2066 10618 7.227116 TCCTGTAATACAAAAGCGTTTTACACT 59.773 33.333 0.00 0.00 37.95 3.55
2067 10619 7.321984 GTCCTGTAATACAAAAGCGTTTTACAC 59.678 37.037 0.00 0.00 37.95 2.90
2068 10620 7.354257 GTCCTGTAATACAAAAGCGTTTTACA 58.646 34.615 0.00 1.50 39.44 2.41
2069 10621 6.517374 CGTCCTGTAATACAAAAGCGTTTTAC 59.483 38.462 0.00 0.00 35.27 2.01
2070 10622 6.347563 CCGTCCTGTAATACAAAAGCGTTTTA 60.348 38.462 0.00 0.00 0.00 1.52
2071 10623 5.445845 CGTCCTGTAATACAAAAGCGTTTT 58.554 37.500 0.00 0.00 0.00 2.43
2072 10624 4.083696 CCGTCCTGTAATACAAAAGCGTTT 60.084 41.667 0.00 0.00 0.00 3.60
2073 10625 3.434299 CCGTCCTGTAATACAAAAGCGTT 59.566 43.478 0.00 0.00 0.00 4.84
2074 10626 2.997986 CCGTCCTGTAATACAAAAGCGT 59.002 45.455 0.00 0.00 0.00 5.07
2075 10627 3.255725 TCCGTCCTGTAATACAAAAGCG 58.744 45.455 0.00 0.00 0.00 4.68
2076 10628 4.035208 CCATCCGTCCTGTAATACAAAAGC 59.965 45.833 0.00 0.00 0.00 3.51
2077 10629 5.424757 TCCATCCGTCCTGTAATACAAAAG 58.575 41.667 0.00 0.00 0.00 2.27
2078 10630 5.046159 ACTCCATCCGTCCTGTAATACAAAA 60.046 40.000 0.00 0.00 0.00 2.44
2079 10631 4.468510 ACTCCATCCGTCCTGTAATACAAA 59.531 41.667 0.00 0.00 0.00 2.83
2080 10632 4.028131 ACTCCATCCGTCCTGTAATACAA 58.972 43.478 0.00 0.00 0.00 2.41
2081 10633 3.638860 ACTCCATCCGTCCTGTAATACA 58.361 45.455 0.00 0.00 0.00 2.29
2082 10634 4.022503 GGTACTCCATCCGTCCTGTAATAC 60.023 50.000 0.00 0.00 0.00 1.89
2083 10635 4.141088 AGGTACTCCATCCGTCCTGTAATA 60.141 45.833 0.00 0.00 35.89 0.98
2084 10636 2.963782 GGTACTCCATCCGTCCTGTAAT 59.036 50.000 0.00 0.00 0.00 1.89
2085 10637 2.024655 AGGTACTCCATCCGTCCTGTAA 60.025 50.000 0.00 0.00 35.89 2.41
2086 10638 1.567649 AGGTACTCCATCCGTCCTGTA 59.432 52.381 0.00 0.00 35.89 2.74
2087 10639 0.335361 AGGTACTCCATCCGTCCTGT 59.665 55.000 0.00 0.00 35.89 4.00
2088 10640 3.209091 AGGTACTCCATCCGTCCTG 57.791 57.895 0.00 0.00 35.89 3.86
2118 10670 4.760204 CCCCGTCTCAAAATAAGTGTCTTT 59.240 41.667 0.00 0.00 0.00 2.52
2140 10692 6.438108 GGAGGAGGGAGTATTAGATTACTTCC 59.562 46.154 1.33 1.33 45.09 3.46
2153 10706 2.330661 TTTTTCGGGAGGAGGGAGTA 57.669 50.000 0.00 0.00 0.00 2.59
2154 10707 3.175498 TTTTTCGGGAGGAGGGAGT 57.825 52.632 0.00 0.00 0.00 3.85
2169 10722 2.091555 TGTACAGAGGGGGCAAGTTTTT 60.092 45.455 0.00 0.00 0.00 1.94
2170 10723 1.497286 TGTACAGAGGGGGCAAGTTTT 59.503 47.619 0.00 0.00 0.00 2.43
2171 10724 1.145571 TGTACAGAGGGGGCAAGTTT 58.854 50.000 0.00 0.00 0.00 2.66
2172 10725 1.372501 ATGTACAGAGGGGGCAAGTT 58.627 50.000 0.33 0.00 0.00 2.66
2173 10726 1.282157 GAATGTACAGAGGGGGCAAGT 59.718 52.381 0.33 0.00 0.00 3.16
2174 10727 1.281867 TGAATGTACAGAGGGGGCAAG 59.718 52.381 0.33 0.00 0.00 4.01
2175 10728 1.367346 TGAATGTACAGAGGGGGCAA 58.633 50.000 0.33 0.00 0.00 4.52
2176 10729 1.595311 ATGAATGTACAGAGGGGGCA 58.405 50.000 0.33 0.00 0.00 5.36
2177 10730 2.736670 AATGAATGTACAGAGGGGGC 57.263 50.000 0.33 0.00 0.00 5.80
2178 10731 5.133221 CCTTAAATGAATGTACAGAGGGGG 58.867 45.833 0.33 0.00 0.00 5.40
2179 10732 5.133221 CCCTTAAATGAATGTACAGAGGGG 58.867 45.833 0.33 0.00 0.00 4.79
2180 10733 4.580580 GCCCTTAAATGAATGTACAGAGGG 59.419 45.833 0.33 8.46 34.99 4.30
2181 10734 4.580580 GGCCCTTAAATGAATGTACAGAGG 59.419 45.833 0.33 0.00 0.00 3.69
2182 10735 5.192927 TGGCCCTTAAATGAATGTACAGAG 58.807 41.667 0.00 0.00 0.00 3.35
2183 10736 5.186256 TGGCCCTTAAATGAATGTACAGA 57.814 39.130 0.00 0.00 0.00 3.41
2184 10737 5.913137 TTGGCCCTTAAATGAATGTACAG 57.087 39.130 0.00 0.00 0.00 2.74
2185 10738 6.865834 ATTTGGCCCTTAAATGAATGTACA 57.134 33.333 0.00 0.00 0.00 2.90
2186 10739 7.821846 TCAAATTTGGCCCTTAAATGAATGTAC 59.178 33.333 17.90 0.00 0.00 2.90
2187 10740 7.911651 TCAAATTTGGCCCTTAAATGAATGTA 58.088 30.769 17.90 0.00 0.00 2.29
2188 10741 6.777782 TCAAATTTGGCCCTTAAATGAATGT 58.222 32.000 17.90 0.00 0.00 2.71
2189 10742 7.064966 GTCTCAAATTTGGCCCTTAAATGAATG 59.935 37.037 17.90 1.41 0.00 2.67
2190 10743 7.105588 GTCTCAAATTTGGCCCTTAAATGAAT 58.894 34.615 17.90 0.00 0.00 2.57
2191 10744 6.042552 TGTCTCAAATTTGGCCCTTAAATGAA 59.957 34.615 17.90 0.00 0.00 2.57
2192 10745 5.541868 TGTCTCAAATTTGGCCCTTAAATGA 59.458 36.000 17.90 0.00 0.00 2.57
2193 10746 5.792741 TGTCTCAAATTTGGCCCTTAAATG 58.207 37.500 17.90 0.00 0.00 2.32
2194 10747 6.269769 TCTTGTCTCAAATTTGGCCCTTAAAT 59.730 34.615 17.90 0.00 0.00 1.40
2195 10748 5.600484 TCTTGTCTCAAATTTGGCCCTTAAA 59.400 36.000 17.90 0.00 0.00 1.52
2196 10749 5.144100 TCTTGTCTCAAATTTGGCCCTTAA 58.856 37.500 17.90 6.00 0.00 1.85
2197 10750 4.735369 TCTTGTCTCAAATTTGGCCCTTA 58.265 39.130 17.90 0.00 0.00 2.69
2198 10751 3.575805 TCTTGTCTCAAATTTGGCCCTT 58.424 40.909 17.90 0.00 0.00 3.95
2199 10752 3.243359 TCTTGTCTCAAATTTGGCCCT 57.757 42.857 17.90 0.00 0.00 5.19
2200 10753 4.541973 AATCTTGTCTCAAATTTGGCCC 57.458 40.909 17.90 6.64 0.00 5.80
2201 10754 6.866010 AAAAATCTTGTCTCAAATTTGGCC 57.134 33.333 17.90 0.00 0.00 5.36
2221 10774 3.795877 ACGTACTCCTTCCGTTCAAAAA 58.204 40.909 0.00 0.00 0.00 1.94
2222 10775 3.068590 AGACGTACTCCTTCCGTTCAAAA 59.931 43.478 0.00 0.00 34.51 2.44
2223 10776 2.624838 AGACGTACTCCTTCCGTTCAAA 59.375 45.455 0.00 0.00 34.51 2.69
2224 10777 2.030540 CAGACGTACTCCTTCCGTTCAA 60.031 50.000 0.00 0.00 34.51 2.69
2225 10778 1.538512 CAGACGTACTCCTTCCGTTCA 59.461 52.381 0.00 0.00 34.51 3.18
2226 10779 1.808945 TCAGACGTACTCCTTCCGTTC 59.191 52.381 0.00 0.00 34.51 3.95
2227 10780 1.901591 TCAGACGTACTCCTTCCGTT 58.098 50.000 0.00 0.00 34.51 4.44
2228 10781 2.125773 ATCAGACGTACTCCTTCCGT 57.874 50.000 0.00 0.00 37.56 4.69
2229 10782 4.832590 AATATCAGACGTACTCCTTCCG 57.167 45.455 0.00 0.00 0.00 4.30
2230 10783 5.903810 ACAAATATCAGACGTACTCCTTCC 58.096 41.667 0.00 0.00 0.00 3.46
2231 10784 7.829378 AAACAAATATCAGACGTACTCCTTC 57.171 36.000 0.00 0.00 0.00 3.46
2232 10785 8.308931 TGTAAACAAATATCAGACGTACTCCTT 58.691 33.333 0.00 0.00 0.00 3.36
2233 10786 7.833786 TGTAAACAAATATCAGACGTACTCCT 58.166 34.615 0.00 0.00 0.00 3.69
2234 10787 8.470040 TTGTAAACAAATATCAGACGTACTCC 57.530 34.615 0.00 0.00 32.11 3.85
2237 10790 9.537848 CCTTTTGTAAACAAATATCAGACGTAC 57.462 33.333 8.96 0.00 44.30 3.67
2257 10810 5.098211 GCTTGCTAATTGCTACTCCTTTTG 58.902 41.667 0.00 0.00 43.37 2.44
2259 10812 4.335416 TGCTTGCTAATTGCTACTCCTTT 58.665 39.130 0.00 0.00 43.37 3.11
2284 10837 4.157656 GTGCCTACCAGCAAATGAATTACA 59.842 41.667 0.00 0.00 46.19 2.41
2308 10861 6.368516 ACATACTTGTTAATTGCCAATTGCAC 59.631 34.615 12.86 9.57 41.15 4.57
2330 10883 4.090761 AGATGGCGATGGAATTACACAT 57.909 40.909 0.00 0.00 0.00 3.21
2428 11003 3.977244 GGCGTGGCAAAGTGGGTG 61.977 66.667 0.00 0.00 0.00 4.61
2431 11006 0.249826 AAAATGGCGTGGCAAAGTGG 60.250 50.000 0.00 0.00 0.00 4.00
2433 11008 1.580815 CAAAAATGGCGTGGCAAAGT 58.419 45.000 0.00 0.00 0.00 2.66
2444 11019 6.991938 TCACCTCTAATCAAACCAAAAATGG 58.008 36.000 0.00 0.00 0.00 3.16
2445 11020 6.587608 GCTCACCTCTAATCAAACCAAAAATG 59.412 38.462 0.00 0.00 0.00 2.32
2446 11021 6.267471 TGCTCACCTCTAATCAAACCAAAAAT 59.733 34.615 0.00 0.00 0.00 1.82
2450 11025 4.072131 GTGCTCACCTCTAATCAAACCAA 58.928 43.478 0.00 0.00 0.00 3.67
2454 11029 6.995686 TGTAAAAGTGCTCACCTCTAATCAAA 59.004 34.615 0.00 0.00 0.00 2.69
2455 11030 6.426937 GTGTAAAAGTGCTCACCTCTAATCAA 59.573 38.462 0.00 0.00 0.00 2.57
2456 11031 5.932303 GTGTAAAAGTGCTCACCTCTAATCA 59.068 40.000 0.00 0.00 0.00 2.57
2457 11032 5.351740 GGTGTAAAAGTGCTCACCTCTAATC 59.648 44.000 6.02 0.00 44.57 1.75
2475 11065 7.446013 AGTTCGGTTCTTTGATTTATGGTGTAA 59.554 33.333 0.00 0.00 0.00 2.41
2524 11114 5.195940 TCCCACATTTTTGGCAAATTTTCA 58.804 33.333 14.29 0.00 35.00 2.69
2527 11117 6.777782 TCTATCCCACATTTTTGGCAAATTT 58.222 32.000 14.29 1.29 35.00 1.82
2543 11133 5.253330 GGTCAACTCACAAATTCTATCCCA 58.747 41.667 0.00 0.00 0.00 4.37
2597 11187 1.144093 AGGGATGAAAACACCGAACCA 59.856 47.619 0.00 0.00 0.00 3.67
2615 11205 5.371115 ACATCCGAACACAAACAATTAGG 57.629 39.130 0.00 0.00 0.00 2.69
2619 11209 5.560966 GGATACATCCGAACACAAACAAT 57.439 39.130 0.00 0.00 37.19 2.71
2632 11223 3.121544 GACGAAAACCGAGGATACATCC 58.878 50.000 0.00 0.00 43.67 3.51
2641 11232 6.470557 TGTTTATTTAGGACGAAAACCGAG 57.529 37.500 0.00 0.00 41.76 4.63
2664 11255 9.812347 AATGTATATGGTGTGATGGTCAATTAT 57.188 29.630 0.00 0.00 0.00 1.28
2685 11276 8.924511 AGAAAAGAGAAGTCCATTTCAATGTA 57.075 30.769 0.00 0.00 34.03 2.29
2720 11311 5.999205 TCCAAACCCTAATACGTCTAACA 57.001 39.130 0.00 0.00 0.00 2.41
2721 11312 6.165577 TGTTCCAAACCCTAATACGTCTAAC 58.834 40.000 0.00 0.00 0.00 2.34
2722 11313 6.357579 TGTTCCAAACCCTAATACGTCTAA 57.642 37.500 0.00 0.00 0.00 2.10
2723 11314 5.999205 TGTTCCAAACCCTAATACGTCTA 57.001 39.130 0.00 0.00 0.00 2.59
2724 11315 4.895668 TGTTCCAAACCCTAATACGTCT 57.104 40.909 0.00 0.00 0.00 4.18
2725 11316 5.675323 GCATTGTTCCAAACCCTAATACGTC 60.675 44.000 0.00 0.00 0.00 4.34
2726 11317 4.157105 GCATTGTTCCAAACCCTAATACGT 59.843 41.667 0.00 0.00 0.00 3.57
2727 11318 4.398044 AGCATTGTTCCAAACCCTAATACG 59.602 41.667 0.00 0.00 0.00 3.06
2728 11319 5.448632 CGAGCATTGTTCCAAACCCTAATAC 60.449 44.000 0.00 0.00 0.00 1.89
2729 11320 4.638421 CGAGCATTGTTCCAAACCCTAATA 59.362 41.667 0.00 0.00 0.00 0.98
2730 11321 3.443681 CGAGCATTGTTCCAAACCCTAAT 59.556 43.478 0.00 0.00 0.00 1.73
2731 11322 2.817258 CGAGCATTGTTCCAAACCCTAA 59.183 45.455 0.00 0.00 0.00 2.69
2732 11323 2.039216 TCGAGCATTGTTCCAAACCCTA 59.961 45.455 0.00 0.00 0.00 3.53
2733 11324 1.202879 TCGAGCATTGTTCCAAACCCT 60.203 47.619 0.00 0.00 0.00 4.34
2734 11325 1.243902 TCGAGCATTGTTCCAAACCC 58.756 50.000 0.00 0.00 0.00 4.11
2735 11326 3.181500 GGTATCGAGCATTGTTCCAAACC 60.181 47.826 0.00 0.00 0.00 3.27
2736 11327 3.181500 GGGTATCGAGCATTGTTCCAAAC 60.181 47.826 0.00 0.00 0.00 2.93
2737 11328 3.013921 GGGTATCGAGCATTGTTCCAAA 58.986 45.455 0.00 0.00 0.00 3.28
2738 11329 2.238646 AGGGTATCGAGCATTGTTCCAA 59.761 45.455 0.00 0.00 0.00 3.53
2739 11330 1.837439 AGGGTATCGAGCATTGTTCCA 59.163 47.619 0.00 0.00 0.00 3.53
2740 11331 2.614057 CAAGGGTATCGAGCATTGTTCC 59.386 50.000 0.00 0.00 39.40 3.62
2741 11332 2.614057 CCAAGGGTATCGAGCATTGTTC 59.386 50.000 0.00 0.00 41.93 3.18
2742 11333 2.238646 TCCAAGGGTATCGAGCATTGTT 59.761 45.455 0.00 0.00 41.93 2.83
2743 11334 1.837439 TCCAAGGGTATCGAGCATTGT 59.163 47.619 0.00 0.00 41.93 2.71
2744 11335 2.487934 CTCCAAGGGTATCGAGCATTG 58.512 52.381 0.00 0.00 42.86 2.82
2745 11336 1.417890 CCTCCAAGGGTATCGAGCATT 59.582 52.381 0.00 0.00 0.00 3.56
2746 11337 1.051812 CCTCCAAGGGTATCGAGCAT 58.948 55.000 0.00 0.00 0.00 3.79
2747 11338 2.516448 CCTCCAAGGGTATCGAGCA 58.484 57.895 0.00 0.00 0.00 4.26
2757 11348 2.240162 GACAGCCGTACCCTCCAAGG 62.240 65.000 0.00 0.00 34.30 3.61
2758 11349 1.218316 GACAGCCGTACCCTCCAAG 59.782 63.158 0.00 0.00 0.00 3.61
2759 11350 0.907704 ATGACAGCCGTACCCTCCAA 60.908 55.000 0.00 0.00 0.00 3.53
2760 11351 0.032912 TATGACAGCCGTACCCTCCA 60.033 55.000 0.00 0.00 0.00 3.86
2761 11352 1.339097 ATATGACAGCCGTACCCTCC 58.661 55.000 0.00 0.00 0.00 4.30
2762 11353 4.803098 AATATATGACAGCCGTACCCTC 57.197 45.455 0.00 0.00 0.00 4.30
2763 11354 4.347000 ACAAATATATGACAGCCGTACCCT 59.653 41.667 0.00 0.00 0.00 4.34
2764 11355 4.638304 ACAAATATATGACAGCCGTACCC 58.362 43.478 0.00 0.00 0.00 3.69
2765 11356 7.149973 TCTTACAAATATATGACAGCCGTACC 58.850 38.462 0.00 0.00 0.00 3.34
2766 11357 7.328737 CCTCTTACAAATATATGACAGCCGTAC 59.671 40.741 0.00 0.00 0.00 3.67
2767 11358 7.375834 CCTCTTACAAATATATGACAGCCGTA 58.624 38.462 0.00 0.00 0.00 4.02
2768 11359 6.223852 CCTCTTACAAATATATGACAGCCGT 58.776 40.000 0.00 0.00 0.00 5.68
2769 11360 5.639506 CCCTCTTACAAATATATGACAGCCG 59.360 44.000 0.00 0.00 0.00 5.52
2770 11361 6.769512 TCCCTCTTACAAATATATGACAGCC 58.230 40.000 0.00 0.00 0.00 4.85
2771 11362 7.173390 GGTTCCCTCTTACAAATATATGACAGC 59.827 40.741 0.00 0.00 0.00 4.40
2772 11363 7.385205 CGGTTCCCTCTTACAAATATATGACAG 59.615 40.741 0.00 0.00 0.00 3.51
2773 11364 7.147620 ACGGTTCCCTCTTACAAATATATGACA 60.148 37.037 0.00 0.00 0.00 3.58
2774 11365 7.215085 ACGGTTCCCTCTTACAAATATATGAC 58.785 38.462 0.00 0.00 0.00 3.06
2775 11366 7.369551 ACGGTTCCCTCTTACAAATATATGA 57.630 36.000 0.00 0.00 0.00 2.15
2776 11367 8.145767 TGTACGGTTCCCTCTTACAAATATATG 58.854 37.037 0.00 0.00 0.00 1.78
2777 11368 8.253867 TGTACGGTTCCCTCTTACAAATATAT 57.746 34.615 0.00 0.00 0.00 0.86
2778 11369 7.658525 TGTACGGTTCCCTCTTACAAATATA 57.341 36.000 0.00 0.00 0.00 0.86
2779 11370 6.549433 TGTACGGTTCCCTCTTACAAATAT 57.451 37.500 0.00 0.00 0.00 1.28
2780 11371 5.999205 TGTACGGTTCCCTCTTACAAATA 57.001 39.130 0.00 0.00 0.00 1.40
2781 11372 4.895668 TGTACGGTTCCCTCTTACAAAT 57.104 40.909 0.00 0.00 0.00 2.32
2782 11373 4.686191 TTGTACGGTTCCCTCTTACAAA 57.314 40.909 0.00 0.00 0.00 2.83
2783 11374 4.686191 TTTGTACGGTTCCCTCTTACAA 57.314 40.909 0.00 0.00 0.00 2.41
2784 11375 4.895668 ATTTGTACGGTTCCCTCTTACA 57.104 40.909 0.00 0.00 0.00 2.41
2785 11376 5.723295 TGTATTTGTACGGTTCCCTCTTAC 58.277 41.667 0.00 0.00 0.00 2.34
2786 11377 5.999205 TGTATTTGTACGGTTCCCTCTTA 57.001 39.130 0.00 0.00 0.00 2.10
2787 11378 4.895668 TGTATTTGTACGGTTCCCTCTT 57.104 40.909 0.00 0.00 0.00 2.85
2788 11379 4.895668 TTGTATTTGTACGGTTCCCTCT 57.104 40.909 0.00 0.00 0.00 3.69
2789 11380 6.072342 ACAATTTGTATTTGTACGGTTCCCTC 60.072 38.462 0.00 0.00 35.61 4.30
2790 11381 5.771165 ACAATTTGTATTTGTACGGTTCCCT 59.229 36.000 0.00 0.00 35.61 4.20
2791 11382 6.016213 ACAATTTGTATTTGTACGGTTCCC 57.984 37.500 0.00 0.00 35.61 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.