Multiple sequence alignment - TraesCS7A01G200400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G200400 chr7A 100.000 8716 0 0 1 8716 162774333 162783048 0.000000e+00 16096.0
1 TraesCS7A01G200400 chr7A 95.876 194 6 1 1786 1977 130378375 130378182 6.570000e-81 313.0
2 TraesCS7A01G200400 chr7A 84.483 174 26 1 5506 5679 162779732 162779560 4.180000e-38 171.0
3 TraesCS7A01G200400 chr7A 84.483 174 26 1 5228 5400 162780011 162779838 4.180000e-38 171.0
4 TraesCS7A01G200400 chr7B 95.308 2046 82 9 2555 4590 123786169 123788210 0.000000e+00 3234.0
5 TraesCS7A01G200400 chr7B 92.661 1199 46 10 5673 6836 123795443 123796634 0.000000e+00 1688.0
6 TraesCS7A01G200400 chr7B 91.328 1084 59 13 4597 5679 123794371 123795420 0.000000e+00 1448.0
7 TraesCS7A01G200400 chr7B 96.957 690 18 3 7022 7711 123796948 123797634 0.000000e+00 1155.0
8 TraesCS7A01G200400 chr7B 92.162 791 39 10 967 1742 123784575 123785357 0.000000e+00 1096.0
9 TraesCS7A01G200400 chr7B 95.595 613 17 3 1966 2573 123785381 123785988 0.000000e+00 974.0
10 TraesCS7A01G200400 chr7B 82.831 664 94 11 4747 5400 123795901 123795248 2.110000e-160 577.0
11 TraesCS7A01G200400 chr7B 97.949 195 4 0 6831 7025 123796674 123796868 1.080000e-88 339.0
12 TraesCS7A01G200400 chr7B 81.455 426 33 26 7788 8180 123797672 123798084 3.060000e-79 307.0
13 TraesCS7A01G200400 chr7B 75.806 310 42 17 5781 6088 693721378 693721656 9.190000e-25 126.0
14 TraesCS7A01G200400 chr7B 78.307 189 10 9 1 172 123784365 123784539 9.320000e-15 93.5
15 TraesCS7A01G200400 chr7B 100.000 28 0 0 4573 4600 123793960 123793987 1.600000e-02 52.8
16 TraesCS7A01G200400 chr7D 95.685 1344 44 7 1966 3302 161483504 161484840 0.000000e+00 2148.0
17 TraesCS7A01G200400 chr7D 94.665 1312 55 10 3299 4600 161484952 161486258 0.000000e+00 2021.0
18 TraesCS7A01G200400 chr7D 93.209 1075 60 5 4597 5671 161486292 161487353 0.000000e+00 1568.0
19 TraesCS7A01G200400 chr7D 92.453 954 65 7 7022 7972 161488857 161489806 0.000000e+00 1356.0
20 TraesCS7A01G200400 chr7D 95.736 774 20 7 6065 6836 161487739 161488501 0.000000e+00 1234.0
21 TraesCS7A01G200400 chr7D 97.051 373 10 1 1005 1376 161482776 161483148 2.070000e-175 627.0
22 TraesCS7A01G200400 chr7D 93.860 342 18 1 5673 6014 161487384 161487722 6.030000e-141 512.0
23 TraesCS7A01G200400 chr7D 95.730 281 12 0 8434 8714 161492416 161492696 3.710000e-123 453.0
24 TraesCS7A01G200400 chr7D 87.903 372 41 3 8074 8442 161489878 161490248 1.340000e-117 435.0
25 TraesCS7A01G200400 chr7D 89.017 346 22 7 1447 1783 161483175 161483513 1.750000e-111 414.0
26 TraesCS7A01G200400 chr7D 98.462 195 3 0 6831 7025 161488541 161488735 2.330000e-90 344.0
27 TraesCS7A01G200400 chr7D 87.313 134 1 1 1 118 161482502 161482635 1.180000e-28 139.0
28 TraesCS7A01G200400 chr7D 90.909 66 1 1 893 953 161482693 161482758 5.610000e-12 84.2
29 TraesCS7A01G200400 chr7D 84.706 85 12 1 4437 4520 334340484 334340400 5.610000e-12 84.2
30 TraesCS7A01G200400 chr7D 89.655 58 6 0 6148 6205 335501283 335501340 3.370000e-09 75.0
31 TraesCS7A01G200400 chr7D 89.655 58 6 0 6148 6205 335505055 335505112 3.370000e-09 75.0
32 TraesCS7A01G200400 chr3A 94.847 718 28 3 172 887 634080004 634079294 0.000000e+00 1112.0
33 TraesCS7A01G200400 chr3A 85.854 714 85 12 174 885 595774955 595775654 0.000000e+00 745.0
34 TraesCS7A01G200400 chr3A 95.050 202 5 5 1779 1977 740079746 740079547 6.570000e-81 313.0
35 TraesCS7A01G200400 chr3A 79.412 238 35 9 8196 8432 706512000 706511776 1.170000e-33 156.0
36 TraesCS7A01G200400 chr1A 93.741 719 34 7 172 887 585643092 585642382 0.000000e+00 1068.0
37 TraesCS7A01G200400 chr1A 86.806 720 80 9 172 885 590118721 590118011 0.000000e+00 789.0
38 TraesCS7A01G200400 chr1A 95.309 469 22 0 419 887 543489339 543489807 0.000000e+00 745.0
39 TraesCS7A01G200400 chr1A 94.515 237 9 4 172 404 543488025 543488261 6.430000e-96 363.0
40 TraesCS7A01G200400 chr1A 99.465 187 1 0 1779 1965 397087634 397087448 3.010000e-89 340.0
41 TraesCS7A01G200400 chr1A 92.694 219 6 10 1760 1968 390635988 390635770 3.060000e-79 307.0
42 TraesCS7A01G200400 chr1A 75.161 310 40 29 5775 6079 236293823 236294100 2.570000e-20 111.0
43 TraesCS7A01G200400 chr1A 81.553 103 18 1 6294 6395 218756551 218756449 5.610000e-12 84.2
44 TraesCS7A01G200400 chr1D 93.287 715 39 3 175 887 403063871 403063164 0.000000e+00 1046.0
45 TraesCS7A01G200400 chr1D 94.203 207 7 4 1765 1968 314506173 314506377 2.360000e-80 311.0
46 TraesCS7A01G200400 chr1D 76.494 502 72 22 4606 5093 298091699 298092168 1.890000e-56 231.0
47 TraesCS7A01G200400 chr1D 79.695 197 25 10 5781 5976 216699106 216699288 2.550000e-25 128.0
48 TraesCS7A01G200400 chr1D 83.200 125 20 1 8215 8339 469828087 469827964 7.150000e-21 113.0
49 TraesCS7A01G200400 chr1D 87.368 95 10 2 5996 6088 151829168 151829262 3.330000e-19 108.0
50 TraesCS7A01G200400 chr5B 90.509 727 50 8 172 887 657199421 657200139 0.000000e+00 942.0
51 TraesCS7A01G200400 chr5B 86.471 680 79 6 172 850 664028887 664028220 0.000000e+00 734.0
52 TraesCS7A01G200400 chr5B 75.333 300 45 18 5781 6079 412499991 412500262 5.530000e-22 117.0
53 TraesCS7A01G200400 chr5D 86.713 715 79 9 172 885 527506757 527506058 0.000000e+00 780.0
54 TraesCS7A01G200400 chr5D 96.465 198 6 1 1780 1977 66765021 66765217 8.440000e-85 326.0
55 TraesCS7A01G200400 chr5D 85.714 84 10 2 4438 4520 60644839 60644921 4.330000e-13 87.9
56 TraesCS7A01G200400 chr3D 91.652 563 39 2 326 887 591111235 591110680 0.000000e+00 773.0
57 TraesCS7A01G200400 chr4A 97.861 187 2 1 1782 1966 47137892 47138078 1.090000e-83 322.0
58 TraesCS7A01G200400 chr4A 75.949 316 43 20 5775 6088 335305668 335305952 1.970000e-26 132.0
59 TraesCS7A01G200400 chr4A 84.706 85 11 2 4437 4519 306613229 306613145 5.610000e-12 84.2
60 TraesCS7A01G200400 chr5A 94.472 199 8 2 1780 1976 156632845 156632648 3.950000e-78 303.0
61 TraesCS7A01G200400 chr5A 75.904 498 83 22 4606 5096 125499054 125498587 4.100000e-53 220.0
62 TraesCS7A01G200400 chr5A 75.692 506 77 29 4606 5096 218655835 218656309 2.470000e-50 211.0
63 TraesCS7A01G200400 chr5A 81.553 103 18 1 6294 6395 239049220 239049118 5.610000e-12 84.2
64 TraesCS7A01G200400 chr2A 93.237 207 10 4 1783 1987 756213673 756213877 1.420000e-77 302.0
65 TraesCS7A01G200400 chr2A 76.190 315 42 18 5775 6087 346749418 346749701 1.530000e-27 135.0
66 TraesCS7A01G200400 chr2A 81.651 109 18 2 6294 6400 354233714 354233606 1.210000e-13 89.8
67 TraesCS7A01G200400 chrUn 77.273 506 66 28 4606 5096 204514123 204514594 1.450000e-62 252.0
68 TraesCS7A01G200400 chrUn 76.953 512 69 28 4606 5102 194831980 194831503 6.760000e-61 246.0
69 TraesCS7A01G200400 chrUn 76.832 505 70 28 4606 5096 204510305 204510776 3.140000e-59 241.0
70 TraesCS7A01G200400 chrUn 75.362 276 37 14 6148 6395 118449933 118449661 4.300000e-18 104.0
71 TraesCS7A01G200400 chrUn 74.809 262 38 14 6148 6383 129858680 129858939 9.320000e-15 93.5
72 TraesCS7A01G200400 chrUn 82.474 97 16 1 6294 6389 215273736 215273832 5.610000e-12 84.2
73 TraesCS7A01G200400 chr4D 76.832 505 71 26 4606 5096 257399166 257398694 8.740000e-60 243.0
74 TraesCS7A01G200400 chr4D 73.904 502 93 24 4606 5096 212840269 212839795 5.410000e-37 167.0
75 TraesCS7A01G200400 chr4D 73.432 271 48 12 6149 6395 254940598 254940328 7.250000e-11 80.5
76 TraesCS7A01G200400 chr6D 77.172 495 62 26 4617 5096 466931451 466931909 3.140000e-59 241.0
77 TraesCS7A01G200400 chr6D 76.634 505 71 26 4606 5096 207776498 207776969 1.460000e-57 235.0
78 TraesCS7A01G200400 chr6D 88.312 77 8 1 4437 4512 135433439 135433515 3.350000e-14 91.6
79 TraesCS7A01G200400 chr2B 75.670 485 71 28 4626 5096 350905953 350905502 1.920000e-46 198.0
80 TraesCS7A01G200400 chr2B 76.489 319 44 19 5781 6098 351295847 351295559 2.540000e-30 145.0
81 TraesCS7A01G200400 chr2B 76.375 309 42 19 5781 6088 322897284 322897006 4.240000e-28 137.0
82 TraesCS7A01G200400 chr2B 83.516 91 14 1 6294 6383 445507505 445507595 5.610000e-12 84.2
83 TraesCS7A01G200400 chr1B 79.181 293 47 10 4598 4877 400810520 400810811 3.210000e-44 191.0
84 TraesCS7A01G200400 chr1B 84.706 85 12 1 4437 4520 244567386 244567470 5.610000e-12 84.2
85 TraesCS7A01G200400 chr1B 82.474 97 16 1 6294 6389 431052099 431052195 5.610000e-12 84.2
86 TraesCS7A01G200400 chr1B 92.453 53 4 0 6148 6200 470058444 470058496 9.380000e-10 76.8
87 TraesCS7A01G200400 chr6A 74.354 503 84 24 4605 5094 301538053 301537583 1.160000e-38 172.0
88 TraesCS7A01G200400 chr6A 76.667 210 23 16 5886 6090 272289931 272290119 9.320000e-15 93.5
89 TraesCS7A01G200400 chr6A 83.516 91 14 1 6294 6383 97234456 97234546 5.610000e-12 84.2
90 TraesCS7A01G200400 chr6A 84.706 85 12 1 4437 4520 272290535 272290451 5.610000e-12 84.2
91 TraesCS7A01G200400 chr6A 97.297 37 1 0 5819 5855 204719850 204719886 7.300000e-06 63.9
92 TraesCS7A01G200400 chr6B 77.346 309 39 19 5781 6088 324689455 324689177 4.210000e-33 154.0
93 TraesCS7A01G200400 chr6B 85.882 85 11 1 4437 4520 566365605 566365689 1.210000e-13 89.8
94 TraesCS7A01G200400 chr6B 89.655 58 6 0 6148 6205 320686693 320686750 3.370000e-09 75.0
95 TraesCS7A01G200400 chr6B 100.000 35 0 0 8398 8432 172313077 172313043 2.030000e-06 65.8
96 TraesCS7A01G200400 chr4B 77.348 181 23 14 5781 5960 299337854 299338017 3.350000e-14 91.6
97 TraesCS7A01G200400 chr3B 77.297 185 20 14 5886 6069 386959923 386959760 1.210000e-13 89.8
98 TraesCS7A01G200400 chr3B 81.553 103 18 1 6294 6395 328815927 328815825 5.610000e-12 84.2
99 TraesCS7A01G200400 chr2D 91.379 58 5 0 6148 6205 274761756 274761813 7.250000e-11 80.5
100 TraesCS7A01G200400 chr2D 91.071 56 5 0 8230 8285 592616172 592616227 9.380000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G200400 chr7A 162774333 162783048 8715 False 16096.000000 16096 100.000000 1 8716 1 chr7A.!!$F1 8715
1 TraesCS7A01G200400 chr7B 123784365 123788210 3845 False 1349.375000 3234 90.343000 1 4590 4 chr7B.!!$F2 4589
2 TraesCS7A01G200400 chr7B 123793960 123798084 4124 False 831.633333 1688 93.391667 4573 8180 6 chr7B.!!$F3 3607
3 TraesCS7A01G200400 chr7B 123795248 123795901 653 True 577.000000 577 82.831000 4747 5400 1 chr7B.!!$R1 653
4 TraesCS7A01G200400 chr7D 161482502 161492696 10194 False 871.938462 2148 93.230231 1 8714 13 chr7D.!!$F1 8713
5 TraesCS7A01G200400 chr3A 634079294 634080004 710 True 1112.000000 1112 94.847000 172 887 1 chr3A.!!$R1 715
6 TraesCS7A01G200400 chr3A 595774955 595775654 699 False 745.000000 745 85.854000 174 885 1 chr3A.!!$F1 711
7 TraesCS7A01G200400 chr1A 585642382 585643092 710 True 1068.000000 1068 93.741000 172 887 1 chr1A.!!$R4 715
8 TraesCS7A01G200400 chr1A 590118011 590118721 710 True 789.000000 789 86.806000 172 885 1 chr1A.!!$R5 713
9 TraesCS7A01G200400 chr1A 543488025 543489807 1782 False 554.000000 745 94.912000 172 887 2 chr1A.!!$F2 715
10 TraesCS7A01G200400 chr1D 403063164 403063871 707 True 1046.000000 1046 93.287000 175 887 1 chr1D.!!$R1 712
11 TraesCS7A01G200400 chr5B 657199421 657200139 718 False 942.000000 942 90.509000 172 887 1 chr5B.!!$F2 715
12 TraesCS7A01G200400 chr5B 664028220 664028887 667 True 734.000000 734 86.471000 172 850 1 chr5B.!!$R1 678
13 TraesCS7A01G200400 chr5D 527506058 527506757 699 True 780.000000 780 86.713000 172 885 1 chr5D.!!$R1 713
14 TraesCS7A01G200400 chr3D 591110680 591111235 555 True 773.000000 773 91.652000 326 887 1 chr3D.!!$R1 561
15 TraesCS7A01G200400 chrUn 204510305 204514594 4289 False 246.500000 252 77.052500 4606 5096 2 chrUn.!!$F3 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 179 0.180406 GAGGCGAGCCAAGGGATAAA 59.820 55.0 17.18 0.00 38.92 1.40 F
1629 2775 1.109323 GTTTGTTGGGAGCAGGCAGT 61.109 55.0 0.00 0.00 0.00 4.40 F
1802 2950 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.0 18.92 18.25 46.66 3.06 F
2729 4081 0.325933 TGGCAACCAGAGAGGATGTG 59.674 55.0 0.00 0.00 41.93 3.21 F
3802 5273 0.103208 GGATGCTACCTCACTGACCG 59.897 60.0 0.00 0.00 0.00 4.79 F
3835 5306 0.734309 TCTTAGCACGCATGGCAATG 59.266 50.0 0.00 0.00 36.82 2.82 F
5794 11538 0.457166 CGCCATTGACGTTCCGACTA 60.457 55.0 0.00 0.00 0.00 2.59 F
5795 11539 0.997196 GCCATTGACGTTCCGACTAC 59.003 55.0 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 2929 0.115547 TGTGCCCTAGACACACCCTA 59.884 55.000 12.81 0.00 42.88 3.53 R
2558 3711 1.129998 CAAAAGCCTGATCAGCACTCG 59.870 52.381 17.76 4.38 0.00 4.18 R
3785 5256 0.614979 ACCGGTCAGTGAGGTAGCAT 60.615 55.000 0.00 0.00 36.34 3.79 R
4506 5989 1.000607 GTTAGACGTCTGCACAGTCCA 60.001 52.381 28.12 1.06 35.65 4.02 R
4836 10539 1.002134 CTTGGCCTGGTCGTTGGAT 60.002 57.895 3.32 0.00 0.00 3.41 R
5803 11547 0.856641 GCTAACACGCAAAGTCGTCA 59.143 50.000 0.00 0.00 41.21 4.35 R
7254 13288 0.788391 GGTGAAGCGTAAGAACACGG 59.212 55.000 0.00 0.00 42.18 4.94 R
7721 13756 1.878102 CGAACCCAGCAGCTTTAGTGT 60.878 52.381 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 176 3.854669 CGAGGCGAGCCAAGGGAT 61.855 66.667 17.18 0.00 38.92 3.85
142 179 0.180406 GAGGCGAGCCAAGGGATAAA 59.820 55.000 17.18 0.00 38.92 1.40
154 191 8.201242 AGCCAAGGGATAAAAATGTTTTCTTA 57.799 30.769 0.00 0.00 0.00 2.10
156 193 9.278978 GCCAAGGGATAAAAATGTTTTCTTAAA 57.721 29.630 0.00 0.00 0.00 1.52
321 360 1.846439 ACCCAACCAGCACTAGCATAT 59.154 47.619 0.00 0.00 45.49 1.78
367 407 1.519408 GGCGGAACAAAAGCTACAGA 58.481 50.000 0.00 0.00 0.00 3.41
377 419 9.744468 GGAACAAAAGCTACAGAAAAATAAAGA 57.256 29.630 0.00 0.00 0.00 2.52
407 1519 8.133627 GTGACGATAGAACAAAACCTAGCTATA 58.866 37.037 0.00 0.00 41.38 1.31
408 1520 8.689061 TGACGATAGAACAAAACCTAGCTATAA 58.311 33.333 0.00 0.00 41.38 0.98
409 1521 8.868635 ACGATAGAACAAAACCTAGCTATAAC 57.131 34.615 0.00 0.00 41.38 1.89
410 1522 7.924947 ACGATAGAACAAAACCTAGCTATAACC 59.075 37.037 0.00 0.00 41.38 2.85
411 1523 7.924412 CGATAGAACAAAACCTAGCTATAACCA 59.076 37.037 0.00 0.00 39.76 3.67
412 1524 9.262358 GATAGAACAAAACCTAGCTATAACCAG 57.738 37.037 0.00 0.00 0.00 4.00
413 1525 5.880887 AGAACAAAACCTAGCTATAACCAGC 59.119 40.000 0.00 0.00 42.12 4.85
417 1529 5.630415 AAACCTAGCTATAACCAGCATCA 57.370 39.130 0.00 0.00 44.35 3.07
446 1559 7.265599 TCAGAAATATCCACTCTTTTGGGTA 57.734 36.000 0.00 0.00 36.64 3.69
472 1585 2.751806 CCAGAAGTGATCCAAGCCTTTC 59.248 50.000 0.00 0.00 0.00 2.62
485 1598 2.601905 AGCCTTTCAAATCAGCACCTT 58.398 42.857 0.00 0.00 0.00 3.50
538 1651 2.515901 GCGCCCACCCATATCCTT 59.484 61.111 0.00 0.00 0.00 3.36
605 1718 3.057734 GCTGTAGCGTGTTTTGTAGTCT 58.942 45.455 0.00 0.00 0.00 3.24
664 1777 9.066892 GGGAGCAAACAGACATAATAATATCAA 57.933 33.333 0.00 0.00 0.00 2.57
689 1802 4.229582 AGGATCATTGGGCTTTACACCTTA 59.770 41.667 0.00 0.00 0.00 2.69
746 1859 4.558178 CATATCAAAGCAGCAACACCAAA 58.442 39.130 0.00 0.00 0.00 3.28
782 1903 6.437793 ACTCTATCTTTGCCAGTGTAGTTAGT 59.562 38.462 0.00 0.00 0.00 2.24
827 1948 7.230747 TCAAGGAAAGACACATGGAATCTTTA 58.769 34.615 16.51 3.74 41.58 1.85
829 1950 5.649831 AGGAAAGACACATGGAATCTTTAGC 59.350 40.000 16.51 8.77 41.58 3.09
832 1953 7.500559 GGAAAGACACATGGAATCTTTAGCTAT 59.499 37.037 16.51 0.31 41.58 2.97
852 1974 1.252904 CCAAGGAGCACCCCACAATG 61.253 60.000 0.00 0.00 36.73 2.82
887 2009 4.998033 CCTAGACAGGGAACAAGAAAAGAC 59.002 45.833 0.00 0.00 38.41 3.01
888 2010 4.503714 AGACAGGGAACAAGAAAAGACA 57.496 40.909 0.00 0.00 0.00 3.41
889 2011 4.455606 AGACAGGGAACAAGAAAAGACAG 58.544 43.478 0.00 0.00 0.00 3.51
890 2012 3.555966 ACAGGGAACAAGAAAAGACAGG 58.444 45.455 0.00 0.00 0.00 4.00
891 2013 2.887152 CAGGGAACAAGAAAAGACAGGG 59.113 50.000 0.00 0.00 0.00 4.45
965 2092 2.894387 GCAGACTGCAGGCGGATC 60.894 66.667 24.98 8.60 44.26 3.36
1003 2130 3.760035 GCTCGGTCGCCTCCAAGA 61.760 66.667 0.00 0.00 0.00 3.02
1013 2140 1.825474 CGCCTCCAAGACTTTCCTCTA 59.175 52.381 0.00 0.00 0.00 2.43
1275 2407 2.361757 TCATTGTTGTTCCTGTTGCTGG 59.638 45.455 0.00 0.00 0.00 4.85
1372 2504 3.694566 GCTGGTAAACCTCTGGTTAATGG 59.305 47.826 2.15 0.00 46.20 3.16
1378 2517 6.492429 GGTAAACCTCTGGTTAATGGTTTTCT 59.508 38.462 13.10 0.00 46.20 2.52
1389 2528 8.875168 TGGTTAATGGTTTTCTGGTTGAATAAT 58.125 29.630 0.00 0.00 34.24 1.28
1427 2566 7.488322 AGTAATTGTAGAGACTGCTGAGAATC 58.512 38.462 0.00 0.00 0.00 2.52
1440 2579 3.742640 GCTGAGAATCTAAGGCGTCCATT 60.743 47.826 0.00 0.00 34.92 3.16
1477 2616 7.883311 GTGATGCACCAAGTATATTATTAGGGT 59.117 37.037 0.00 0.00 0.00 4.34
1478 2617 9.106977 TGATGCACCAAGTATATTATTAGGGTA 57.893 33.333 0.00 0.00 0.00 3.69
1492 2631 7.756395 TTATTAGGGTATCTCGTAGGAACAG 57.244 40.000 0.00 0.00 0.00 3.16
1538 2677 1.203038 TGTGGTGATTGGGTGCTGAAT 60.203 47.619 0.00 0.00 0.00 2.57
1540 2679 2.684881 GTGGTGATTGGGTGCTGAATAG 59.315 50.000 0.00 0.00 0.00 1.73
1551 2690 5.472137 TGGGTGCTGAATAGTTACTTGTTTC 59.528 40.000 0.00 0.00 0.00 2.78
1558 2698 8.021396 GCTGAATAGTTACTTGTTTCCGAAATT 58.979 33.333 0.00 0.00 0.00 1.82
1559 2699 9.893305 CTGAATAGTTACTTGTTTCCGAAATTT 57.107 29.630 0.00 0.00 0.00 1.82
1588 2728 7.059945 GCATTTCACTTTGAACTTGTTCTATCG 59.940 37.037 13.65 4.78 35.89 2.92
1596 2736 8.882415 TTTGAACTTGTTCTATCGAGTACTTT 57.118 30.769 13.65 0.00 32.42 2.66
1597 2737 8.882415 TTGAACTTGTTCTATCGAGTACTTTT 57.118 30.769 13.65 0.00 32.42 2.27
1598 2738 8.294341 TGAACTTGTTCTATCGAGTACTTTTG 57.706 34.615 13.65 0.00 32.42 2.44
1603 2743 9.622004 CTTGTTCTATCGAGTACTTTTGTCTTA 57.378 33.333 0.00 0.00 0.00 2.10
1629 2775 1.109323 GTTTGTTGGGAGCAGGCAGT 61.109 55.000 0.00 0.00 0.00 4.40
1686 2832 6.405538 GGATCTTCTCTCTGATGAAGTTGTT 58.594 40.000 15.37 5.09 40.20 2.83
1735 2883 5.733676 TCTTACTTGATATTGCACAGCTGA 58.266 37.500 23.35 0.00 0.00 4.26
1762 2910 4.623932 TCCTCACAATTGTTGCTAGAGT 57.376 40.909 8.77 0.00 0.00 3.24
1766 2914 7.847096 TCCTCACAATTGTTGCTAGAGTTATA 58.153 34.615 8.77 0.00 0.00 0.98
1767 2915 7.981789 TCCTCACAATTGTTGCTAGAGTTATAG 59.018 37.037 8.77 0.00 0.00 1.31
1768 2916 7.254590 CCTCACAATTGTTGCTAGAGTTATAGC 60.255 40.741 8.77 0.00 46.86 2.97
1769 2917 7.331026 TCACAATTGTTGCTAGAGTTATAGCT 58.669 34.615 8.77 0.00 46.81 3.32
1770 2918 8.474831 TCACAATTGTTGCTAGAGTTATAGCTA 58.525 33.333 8.77 0.00 46.81 3.32
1772 2920 9.838339 ACAATTGTTGCTAGAGTTATAGCTAAT 57.162 29.630 4.92 3.59 46.81 1.73
1792 2940 9.105844 AGCTAATAATGAATATAGGGTGTGTCT 57.894 33.333 0.00 0.00 0.00 3.41
1796 2944 6.688073 AATGAATATAGGGTGTGTCTAGGG 57.312 41.667 0.00 0.00 0.00 3.53
1797 2945 3.901844 TGAATATAGGGTGTGTCTAGGGC 59.098 47.826 0.00 0.00 0.00 5.19
1798 2946 3.630625 ATATAGGGTGTGTCTAGGGCA 57.369 47.619 0.00 0.00 0.00 5.36
1799 2947 1.497161 ATAGGGTGTGTCTAGGGCAC 58.503 55.000 10.20 10.20 37.37 5.01
1800 2948 0.115547 TAGGGTGTGTCTAGGGCACA 59.884 55.000 14.22 14.22 43.60 4.57
1801 2949 0.547712 AGGGTGTGTCTAGGGCACAT 60.548 55.000 18.92 5.97 46.66 3.21
1802 2950 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
1803 2951 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
1804 2952 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
1805 2953 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
1806 2954 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
1807 2955 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
1808 2956 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
1823 2971 6.656945 CATCTAGATGTGCTCTTGTTATTGC 58.343 40.000 22.42 0.00 35.28 3.56
1824 2972 5.733676 TCTAGATGTGCTCTTGTTATTGCA 58.266 37.500 0.00 0.00 35.28 4.08
1832 2980 6.426980 TGCTCTTGTTATTGCACATCTAAG 57.573 37.500 0.00 0.00 0.00 2.18
1833 2981 5.939883 TGCTCTTGTTATTGCACATCTAAGT 59.060 36.000 0.00 0.00 0.00 2.24
1834 2982 6.128200 TGCTCTTGTTATTGCACATCTAAGTG 60.128 38.462 0.00 0.00 42.37 3.16
1835 2983 6.092670 GCTCTTGTTATTGCACATCTAAGTGA 59.907 38.462 0.00 0.00 42.05 3.41
1836 2984 7.601073 TCTTGTTATTGCACATCTAAGTGAG 57.399 36.000 0.00 0.00 42.05 3.51
1837 2985 7.161404 TCTTGTTATTGCACATCTAAGTGAGT 58.839 34.615 0.00 0.00 42.05 3.41
1838 2986 6.726258 TGTTATTGCACATCTAAGTGAGTG 57.274 37.500 0.00 0.00 42.05 3.51
1839 2987 6.463360 TGTTATTGCACATCTAAGTGAGTGA 58.537 36.000 0.00 0.00 42.05 3.41
1840 2988 6.934083 TGTTATTGCACATCTAAGTGAGTGAA 59.066 34.615 0.00 0.00 42.05 3.18
1841 2989 7.607607 TGTTATTGCACATCTAAGTGAGTGAAT 59.392 33.333 0.00 0.00 42.05 2.57
1842 2990 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
1843 2991 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
1844 2992 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
1845 2993 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
1846 2994 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
1847 2995 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
1848 2996 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
1849 2997 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
1850 2998 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
1851 2999 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
1852 3000 8.484641 TCTAAGTGAGTGAATCAAGCATAAAG 57.515 34.615 0.00 0.00 40.43 1.85
1853 3001 8.314021 TCTAAGTGAGTGAATCAAGCATAAAGA 58.686 33.333 0.00 0.00 40.43 2.52
1854 3002 6.981762 AGTGAGTGAATCAAGCATAAAGAG 57.018 37.500 0.00 0.00 40.43 2.85
1855 3003 6.705302 AGTGAGTGAATCAAGCATAAAGAGA 58.295 36.000 0.00 0.00 40.43 3.10
1856 3004 7.164122 AGTGAGTGAATCAAGCATAAAGAGAA 58.836 34.615 0.00 0.00 40.43 2.87
1857 3005 7.663081 AGTGAGTGAATCAAGCATAAAGAGAAA 59.337 33.333 0.00 0.00 40.43 2.52
1858 3006 8.292448 GTGAGTGAATCAAGCATAAAGAGAAAA 58.708 33.333 0.00 0.00 40.43 2.29
1859 3007 8.849168 TGAGTGAATCAAGCATAAAGAGAAAAA 58.151 29.630 0.00 0.00 34.02 1.94
1860 3008 9.339492 GAGTGAATCAAGCATAAAGAGAAAAAG 57.661 33.333 0.00 0.00 0.00 2.27
1861 3009 9.071276 AGTGAATCAAGCATAAAGAGAAAAAGA 57.929 29.630 0.00 0.00 0.00 2.52
1862 3010 9.683069 GTGAATCAAGCATAAAGAGAAAAAGAA 57.317 29.630 0.00 0.00 0.00 2.52
1890 3038 9.442047 AAAGAGAGAAAATATTCACACGAATCT 57.558 29.630 0.00 0.00 41.09 2.40
1891 3039 9.442047 AAGAGAGAAAATATTCACACGAATCTT 57.558 29.630 0.00 0.00 41.09 2.40
1924 3072 9.708092 AGATCAATGACATATGACTTAGATGTG 57.292 33.333 10.38 0.00 41.09 3.21
1925 3073 7.719778 TCAATGACATATGACTTAGATGTGC 57.280 36.000 10.38 0.00 41.09 4.57
1926 3074 7.274447 TCAATGACATATGACTTAGATGTGCA 58.726 34.615 10.38 0.00 41.09 4.57
1927 3075 7.769970 TCAATGACATATGACTTAGATGTGCAA 59.230 33.333 10.38 0.00 41.09 4.08
1928 3076 8.565416 CAATGACATATGACTTAGATGTGCAAT 58.435 33.333 10.38 0.00 41.09 3.56
1929 3077 9.783081 AATGACATATGACTTAGATGTGCAATA 57.217 29.630 10.38 0.00 41.09 1.90
1930 3078 8.593492 TGACATATGACTTAGATGTGCAATAC 57.407 34.615 10.38 0.00 41.09 1.89
1931 3079 8.424133 TGACATATGACTTAGATGTGCAATACT 58.576 33.333 10.38 0.00 41.09 2.12
1932 3080 9.265901 GACATATGACTTAGATGTGCAATACTT 57.734 33.333 10.38 0.00 41.09 2.24
1936 3084 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
1937 3085 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
1938 3086 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
2015 3163 4.980339 TCTCCTGCTGCCAATATATTCA 57.020 40.909 0.00 0.00 0.00 2.57
2186 3334 5.988287 ACCCAAACATTTTGAAACACTCAT 58.012 33.333 0.09 0.00 32.78 2.90
2355 3503 1.062658 TCCATGCTCCTCAGATCTGGA 60.063 52.381 22.42 11.93 0.00 3.86
2415 3563 3.221771 TGTTTTCAGATGTCAACCTGGG 58.778 45.455 0.00 0.00 0.00 4.45
2580 3932 3.338249 GAGTGCTGATCAGGCTTTTGTA 58.662 45.455 23.89 0.00 0.00 2.41
2617 3969 5.979517 GGGCATTCTTACATTATGTTTCTGC 59.020 40.000 2.23 6.38 0.00 4.26
2663 4015 7.886629 ATAGATGGACATTAACATGCAACTT 57.113 32.000 0.00 0.00 33.05 2.66
2726 4078 0.617413 CTGTGGCAACCAGAGAGGAT 59.383 55.000 4.84 0.00 46.28 3.24
2729 4081 0.325933 TGGCAACCAGAGAGGATGTG 59.674 55.000 0.00 0.00 41.93 3.21
2819 4171 4.890378 CAAGAGTGCAGTTGTATGATTCG 58.110 43.478 0.00 0.00 0.00 3.34
2935 4287 9.479549 AAATAATTCTGATACCAAACCTGATGT 57.520 29.630 0.00 0.00 0.00 3.06
2942 4294 8.106462 TCTGATACCAAACCTGATGTTGATTTA 58.894 33.333 0.00 0.00 37.23 1.40
2982 4334 3.658757 TTAGCCTTCCACACATTTTGC 57.341 42.857 0.00 0.00 0.00 3.68
2983 4335 1.412079 AGCCTTCCACACATTTTGCA 58.588 45.000 0.00 0.00 0.00 4.08
3044 4396 7.438160 TCATGTTGTTATGCTCTAAATCCTACG 59.562 37.037 0.00 0.00 0.00 3.51
3092 4444 5.129485 TCATGAGGAAATAACTGAGAGTCCC 59.871 44.000 0.00 0.00 0.00 4.46
3137 4489 8.428063 AGTTTCATGAAGGAATGATCTAGTAGG 58.572 37.037 8.41 0.00 36.48 3.18
3260 4612 5.481122 GCCCTATTTGGTACTTTAAACCCAA 59.519 40.000 5.53 5.53 36.06 4.12
3300 4769 6.426937 TGTTACTTGGCTCAGTTTTCATCTAC 59.573 38.462 0.00 0.00 0.00 2.59
3349 4818 8.091385 TGTGCATTATCATGAGATGTTGATAC 57.909 34.615 18.03 12.06 35.21 2.24
3370 4840 8.417106 TGATACATTGATCTTTAGGTGTCTCTC 58.583 37.037 0.00 0.00 0.00 3.20
3418 4888 1.992557 AGGGTACTTTCTGCAATGGGA 59.007 47.619 0.00 0.00 0.00 4.37
3512 4983 3.384146 TCGGGCGGTAATATTGACAACTA 59.616 43.478 0.00 0.00 0.00 2.24
3588 5059 5.990996 CCACTTTGGATGTGCTTTAATTGTT 59.009 36.000 0.00 0.00 40.96 2.83
3657 5128 4.801164 AGAAGGATCATGGAATTGAAGGG 58.199 43.478 0.00 0.00 0.00 3.95
3766 5237 3.356529 ACCAGGTCAGCTCCTTTTATG 57.643 47.619 0.00 0.00 35.37 1.90
3782 5253 2.061790 TATGTGTGCACCAGCCACCA 62.062 55.000 15.69 0.00 39.60 4.17
3785 5256 4.269523 GTGCACCAGCCACCAGGA 62.270 66.667 5.22 0.00 41.13 3.86
3802 5273 0.103208 GGATGCTACCTCACTGACCG 59.897 60.000 0.00 0.00 0.00 4.79
3824 5295 6.148315 ACCGGTAGTGTTTATTTTCTTAGCAC 59.852 38.462 4.49 0.00 0.00 4.40
3835 5306 0.734309 TCTTAGCACGCATGGCAATG 59.266 50.000 0.00 0.00 36.82 2.82
4014 5491 2.504175 GGCCTCCTATGTGGTTACTCAA 59.496 50.000 0.00 0.00 37.07 3.02
4101 5578 2.234661 TCACCATCGTCTTCTTGAGCAT 59.765 45.455 0.00 0.00 0.00 3.79
4144 5621 3.439129 AGCCGAGCAAGTTTTGGTATTAC 59.561 43.478 0.00 0.00 42.23 1.89
4179 5656 7.862873 CCTTTTCAGTTTGTGAGGTCTATTTTC 59.137 37.037 0.00 0.00 36.21 2.29
4187 5664 8.787852 GTTTGTGAGGTCTATTTTCTTTCATCT 58.212 33.333 0.00 0.00 0.00 2.90
4256 5739 5.923684 CGTGTTTGCCCTTATTTACAACATT 59.076 36.000 0.00 0.00 0.00 2.71
4258 5741 7.042389 CGTGTTTGCCCTTATTTACAACATTTT 60.042 33.333 0.00 0.00 0.00 1.82
4259 5742 8.279800 GTGTTTGCCCTTATTTACAACATTTTC 58.720 33.333 0.00 0.00 0.00 2.29
4355 5838 4.448395 CAGCACAGTTCTCTTCTCTTTCTG 59.552 45.833 0.00 0.00 0.00 3.02
4436 5919 6.821665 GCAATGGAGGTAGTACATTTCTTGTA 59.178 38.462 2.06 0.00 39.87 2.41
4489 5972 4.529716 AAGTTAGAACAAAGTCCCCCAA 57.470 40.909 0.00 0.00 0.00 4.12
4642 10333 4.404073 AGCAGTAGAATCCGAGTCAAATCT 59.596 41.667 0.00 0.00 0.00 2.40
4793 10496 5.883503 TCAACCTCGTAGTGTTTTGTTTT 57.116 34.783 0.00 0.00 0.00 2.43
4836 10539 6.107343 TGCAACTTAGTGTACTTTGTGTGTA 58.893 36.000 0.00 0.00 0.00 2.90
4857 10560 1.227823 CAACGACCAGGCCAAGACA 60.228 57.895 5.01 0.00 0.00 3.41
4859 10562 1.696097 AACGACCAGGCCAAGACAGT 61.696 55.000 5.01 0.00 0.00 3.55
4877 10581 5.301805 AGACAGTAATCAAACCCCAACTTTG 59.698 40.000 0.00 0.00 0.00 2.77
4920 10624 9.935241 ATTGATCTTCATATATACTCGCAAAGT 57.065 29.630 0.00 0.00 42.33 2.66
4921 10625 8.972262 TGATCTTCATATATACTCGCAAAGTC 57.028 34.615 0.00 0.00 39.55 3.01
4922 10626 7.750903 TGATCTTCATATATACTCGCAAAGTCG 59.249 37.037 0.00 0.00 39.55 4.18
4923 10627 5.856986 TCTTCATATATACTCGCAAAGTCGC 59.143 40.000 0.00 0.00 39.55 5.19
4924 10628 5.116069 TCATATATACTCGCAAAGTCGCA 57.884 39.130 0.00 0.00 39.55 5.10
4925 10629 5.525199 TCATATATACTCGCAAAGTCGCAA 58.475 37.500 0.00 0.00 39.55 4.85
4991 10695 2.814097 GCTTGCAGGGTTTAGACCTTCA 60.814 50.000 1.94 0.00 45.75 3.02
5032 10744 5.308237 ACTTCCAACATCTTCAGTAACCTCT 59.692 40.000 0.00 0.00 0.00 3.69
5071 10783 1.131826 GCTAACGCGCAACATCGTT 59.868 52.632 5.73 4.63 41.37 3.85
5155 10867 3.845259 TCGGCCACAGCGGATACC 61.845 66.667 2.24 0.00 42.78 2.73
5202 10914 5.567423 CGAGGTGTAGATGGATATGCAATGA 60.567 44.000 0.00 0.00 0.00 2.57
5217 10929 2.842394 AATGAGAGAGCCCGTGCGTG 62.842 60.000 0.00 0.00 44.33 5.34
5242 10954 8.274322 TGGCATATATAAATTGGATCGAAGGAT 58.726 33.333 0.00 0.00 34.96 3.24
5303 11015 2.732094 ACGGTCCTTCGCGTTTCG 60.732 61.111 5.77 5.79 40.15 3.46
5407 11119 7.727181 ACTCCTACTCAGCGTGATATTTATTT 58.273 34.615 0.00 0.00 0.00 1.40
5414 11126 6.804677 TCAGCGTGATATTTATTTGGCAAAT 58.195 32.000 26.86 26.86 34.90 2.32
5476 11188 4.066646 TGGATGAAGAACGACTTTGACA 57.933 40.909 0.00 0.00 39.13 3.58
5490 11202 6.984474 ACGACTTTGACAATCTGACTAGAAAA 59.016 34.615 0.00 0.00 36.32 2.29
5503 11215 4.036027 TGACTAGAAAAGTGAGACGACGTT 59.964 41.667 0.13 0.00 39.07 3.99
5634 11346 3.335579 GACCGTGCTGGAGTTAATTTCT 58.664 45.455 2.38 0.00 42.00 2.52
5712 11453 3.353836 CTTGTGCGAACACCCGGG 61.354 66.667 22.25 22.25 46.86 5.73
5736 11477 4.377897 GGAAAATAGTATACGCAGTGGCT 58.622 43.478 0.00 0.00 45.73 4.75
5762 11503 7.019774 ACCAATTGATAGTGTGATTTCATCG 57.980 36.000 7.12 0.00 0.00 3.84
5769 11510 7.275183 TGATAGTGTGATTTCATCGAAGGAAT 58.725 34.615 0.00 0.00 0.00 3.01
5793 11537 1.736645 CGCCATTGACGTTCCGACT 60.737 57.895 0.00 0.00 0.00 4.18
5794 11538 0.457166 CGCCATTGACGTTCCGACTA 60.457 55.000 0.00 0.00 0.00 2.59
5795 11539 0.997196 GCCATTGACGTTCCGACTAC 59.003 55.000 0.00 0.00 0.00 2.73
5803 11547 1.480205 CGTTCCGACTACAAACGTGT 58.520 50.000 0.00 0.00 40.51 4.49
5816 11560 1.079875 AACGTGTGACGACTTTGCGT 61.080 50.000 2.62 0.00 46.05 5.24
5918 11662 3.282021 GTCTAATCCCTGCAAGCAATCA 58.718 45.455 0.00 0.00 0.00 2.57
5952 11696 9.612620 AGAAAGAACTACAATAAAAAGCAATCG 57.387 29.630 0.00 0.00 0.00 3.34
6031 11775 1.264749 TGATAGCGGTCTTGGCCTGT 61.265 55.000 3.32 0.00 0.00 4.00
6111 11858 4.712337 ACACTAGGGAGGTTGATCTACTTG 59.288 45.833 0.00 0.00 0.00 3.16
6188 11935 2.840753 GGGCCCAAGTGGAGGTGAA 61.841 63.158 19.95 0.00 37.39 3.18
6256 12003 2.483876 CGATACCGTCATGCTTGGAAT 58.516 47.619 0.00 0.00 0.00 3.01
6353 12116 9.309516 GGATGTGAAAGTTATAGACGTATGAAA 57.690 33.333 0.00 0.00 0.00 2.69
6441 12220 9.013229 CACCTAATCATATGCCTTTGCTTTATA 57.987 33.333 0.00 0.00 38.71 0.98
6474 12253 1.529226 TGGTTGTTTCCATGGTAGCG 58.471 50.000 12.58 0.00 31.96 4.26
6518 12297 3.988819 TGTGATTGTGACGTCTCATTGA 58.011 40.909 19.95 9.04 0.00 2.57
6870 12695 2.802057 GCGAACTATTATGCCCAGTCGT 60.802 50.000 0.00 0.00 0.00 4.34
6979 12804 9.378597 GTCTTCAACATCATTTCGATATCAATG 57.621 33.333 3.12 6.49 31.20 2.82
7010 12835 6.189859 AGCAATCTTACTGAATGGGAAATGA 58.810 36.000 0.00 0.00 0.00 2.57
7143 13177 1.251251 AATCAAAGCCTGCTGGTGTC 58.749 50.000 11.69 0.00 35.27 3.67
7254 13288 4.079253 TGGCAAAGATGGAAAAGGAGTAC 58.921 43.478 0.00 0.00 0.00 2.73
7379 13413 0.597637 CACGTGTCCTGAAACGAGCT 60.598 55.000 16.26 0.00 42.32 4.09
7555 13590 3.565482 TGATGCACACTTTCCTGAAGTTC 59.435 43.478 0.00 0.00 46.34 3.01
7633 13668 2.320781 CTCCTGTAATCATCTCCCCGT 58.679 52.381 0.00 0.00 0.00 5.28
7634 13669 2.700897 CTCCTGTAATCATCTCCCCGTT 59.299 50.000 0.00 0.00 0.00 4.44
7636 13671 4.489737 TCCTGTAATCATCTCCCCGTTAT 58.510 43.478 0.00 0.00 0.00 1.89
7703 13738 6.975197 AGATTATATTGAGCATACGATGTCCG 59.025 38.462 0.00 0.00 45.44 4.79
7711 13746 0.106369 ATACGATGTCCGACAGGGGA 60.106 55.000 7.41 0.00 41.76 4.81
7721 13756 1.462616 CGACAGGGGATTGCAATCAA 58.537 50.000 34.08 0.00 37.15 2.57
7728 13763 4.220382 CAGGGGATTGCAATCAACACTAAA 59.780 41.667 34.08 0.00 37.15 1.85
7766 13801 1.398451 GGCGACACAATGTCTTGTTCG 60.398 52.381 7.33 8.30 44.85 3.95
7776 13811 1.684450 TGTCTTGTTCGGTGCTACTCA 59.316 47.619 0.00 0.00 0.00 3.41
7777 13812 2.299013 TGTCTTGTTCGGTGCTACTCAT 59.701 45.455 0.00 0.00 0.00 2.90
7782 13817 3.071479 TGTTCGGTGCTACTCATTTTCC 58.929 45.455 0.00 0.00 0.00 3.13
7786 13821 2.420022 CGGTGCTACTCATTTTCCAAGG 59.580 50.000 0.00 0.00 0.00 3.61
7815 13850 5.683876 TCCTTTCCATCTTTCTTCTCGAT 57.316 39.130 0.00 0.00 0.00 3.59
7860 13897 2.294512 GCCTTTTCCAAGACCAAGTCAG 59.705 50.000 0.00 0.00 34.60 3.51
7867 13904 2.213499 CAAGACCAAGTCAGGTGTGTC 58.787 52.381 0.00 0.00 43.38 3.67
7888 13925 6.535508 GTGTCTAATTCTAGTCAATGTGGTCC 59.464 42.308 0.00 0.00 0.00 4.46
7934 13973 4.248058 CCATCACTCCTTTCCAAAAATGC 58.752 43.478 0.00 0.00 0.00 3.56
7942 13981 7.388500 CACTCCTTTCCAAAAATGCAACATTAT 59.612 33.333 0.00 0.00 0.00 1.28
7974 14013 6.534079 GCTGACAAGTATAGTACCGTTGATTT 59.466 38.462 0.00 0.00 0.00 2.17
7975 14014 7.464178 GCTGACAAGTATAGTACCGTTGATTTG 60.464 40.741 0.00 0.00 0.00 2.32
7976 14015 7.380536 TGACAAGTATAGTACCGTTGATTTGT 58.619 34.615 0.00 0.00 0.00 2.83
7979 14018 7.490402 ACAAGTATAGTACCGTTGATTTGTAGC 59.510 37.037 0.00 0.00 0.00 3.58
7980 14019 7.344095 AGTATAGTACCGTTGATTTGTAGCT 57.656 36.000 0.00 0.00 0.00 3.32
7981 14020 8.455903 AGTATAGTACCGTTGATTTGTAGCTA 57.544 34.615 0.00 0.00 0.00 3.32
7982 14021 8.906867 AGTATAGTACCGTTGATTTGTAGCTAA 58.093 33.333 0.00 0.00 0.00 3.09
8020 14086 6.653320 AGTTTTCATCACGTGTACAACCATAT 59.347 34.615 16.51 0.00 0.00 1.78
8021 14087 7.820386 AGTTTTCATCACGTGTACAACCATATA 59.180 33.333 16.51 0.00 0.00 0.86
8029 14095 5.916883 ACGTGTACAACCATATAACTATCGC 59.083 40.000 0.00 0.00 0.00 4.58
8030 14096 5.344128 CGTGTACAACCATATAACTATCGCC 59.656 44.000 0.00 0.00 0.00 5.54
8049 14115 2.184167 CGTCACCGGTGGCAAAACT 61.184 57.895 36.28 0.00 34.22 2.66
8057 14123 0.966179 GGTGGCAAAACTACCCTTGG 59.034 55.000 0.00 0.00 44.02 3.61
8058 14124 0.317160 GTGGCAAAACTACCCTTGGC 59.683 55.000 0.00 1.76 45.60 4.52
8060 14126 0.603065 GGCAAAACTACCCTTGGCAG 59.397 55.000 3.76 0.00 44.95 4.85
8061 14127 1.328279 GCAAAACTACCCTTGGCAGT 58.672 50.000 0.00 0.00 0.00 4.40
8062 14128 2.510613 GCAAAACTACCCTTGGCAGTA 58.489 47.619 0.00 0.00 0.00 2.74
8063 14129 2.228103 GCAAAACTACCCTTGGCAGTAC 59.772 50.000 0.00 0.00 0.00 2.73
8064 14130 2.467566 AAACTACCCTTGGCAGTACG 57.532 50.000 0.00 0.00 0.00 3.67
8065 14131 1.636148 AACTACCCTTGGCAGTACGA 58.364 50.000 0.00 0.00 0.00 3.43
8066 14132 1.861982 ACTACCCTTGGCAGTACGAT 58.138 50.000 0.00 0.00 0.00 3.73
8067 14133 3.022557 ACTACCCTTGGCAGTACGATA 57.977 47.619 0.00 0.00 0.00 2.92
8068 14134 2.692041 ACTACCCTTGGCAGTACGATAC 59.308 50.000 0.00 0.00 0.00 2.24
8070 14136 2.185387 ACCCTTGGCAGTACGATACTT 58.815 47.619 0.00 0.00 36.76 2.24
8071 14137 2.093658 ACCCTTGGCAGTACGATACTTG 60.094 50.000 0.00 0.00 36.76 3.16
8077 14143 3.512329 TGGCAGTACGATACTTGAGGAAA 59.488 43.478 0.00 0.00 36.76 3.13
8123 14189 4.327680 AGAGCAGAATACTGGGTTTTCAC 58.672 43.478 0.00 0.00 43.62 3.18
8149 14216 1.337917 TGAGCAGAAGCAGAGCAAGAG 60.338 52.381 0.00 0.00 45.49 2.85
8198 14265 3.704566 GGAACACAAAAAGGAAAGGACCT 59.295 43.478 0.00 0.00 42.69 3.85
8213 14280 5.700402 AAGGACCTTGATAAGTGCTACAT 57.300 39.130 5.76 0.00 0.00 2.29
8244 14311 6.676456 GCATGAATATATGGCAACTCCGAATC 60.676 42.308 0.00 0.00 37.80 2.52
8285 14352 3.256631 GTGATGTGAGGATGGCAACTTTT 59.743 43.478 0.00 0.00 37.61 2.27
8286 14353 4.458989 GTGATGTGAGGATGGCAACTTTTA 59.541 41.667 0.00 0.00 37.61 1.52
8287 14354 4.701651 TGATGTGAGGATGGCAACTTTTAG 59.298 41.667 0.00 0.00 37.61 1.85
8289 14356 4.469657 TGTGAGGATGGCAACTTTTAGTT 58.530 39.130 0.00 0.00 39.39 2.24
8312 14379 4.122046 GCCAAGCATGACAACTTCTTTTT 58.878 39.130 0.00 0.00 0.00 1.94
8314 14381 5.350633 CCAAGCATGACAACTTCTTTTTGA 58.649 37.500 0.00 0.00 0.00 2.69
8318 14385 5.987347 AGCATGACAACTTCTTTTTGAATGG 59.013 36.000 0.00 0.00 33.71 3.16
8386 14455 5.782200 CGCAAGTTTAGTAGTAAAAAGCGTC 59.218 40.000 23.22 7.16 38.62 5.19
8389 14458 7.320560 GCAAGTTTAGTAGTAAAAAGCGTCAAG 59.679 37.037 4.30 0.00 29.74 3.02
8390 14459 7.417496 AGTTTAGTAGTAAAAAGCGTCAAGG 57.583 36.000 4.30 0.00 29.74 3.61
8403 14472 3.121030 CAAGGCCGGAGTGCTTCG 61.121 66.667 5.05 0.00 0.00 3.79
8408 14477 4.680237 CCGGAGTGCTTCGTGCCA 62.680 66.667 0.00 0.00 42.00 4.92
8411 14480 0.530650 CGGAGTGCTTCGTGCCATAT 60.531 55.000 0.00 0.00 42.00 1.78
8415 14484 1.086696 GTGCTTCGTGCCATATGTGT 58.913 50.000 1.24 0.00 42.00 3.72
8416 14485 1.085893 TGCTTCGTGCCATATGTGTG 58.914 50.000 1.24 0.00 42.00 3.82
8417 14486 1.086696 GCTTCGTGCCATATGTGTGT 58.913 50.000 1.24 0.00 35.15 3.72
8431 14500 7.420002 CCATATGTGTGTCACTTATCATTTGG 58.580 38.462 4.27 12.71 34.13 3.28
8432 14501 7.282901 CCATATGTGTGTCACTTATCATTTGGA 59.717 37.037 20.64 5.20 36.92 3.53
8525 16770 1.754803 TGTCAGTCGGACTTGACTTGT 59.245 47.619 26.18 0.85 46.85 3.16
8550 16795 1.111116 TTCCTCGTCGTTCCTGTGGT 61.111 55.000 0.00 0.00 0.00 4.16
8551 16796 0.250858 TCCTCGTCGTTCCTGTGGTA 60.251 55.000 0.00 0.00 0.00 3.25
8570 16815 3.550678 GGTAACGTAGTGATGTGCTTAGC 59.449 47.826 0.00 0.00 45.00 3.09
8573 16818 3.861840 ACGTAGTGATGTGCTTAGCATT 58.138 40.909 11.03 0.62 42.51 3.56
8597 16842 2.490993 GAAACCATTGGCCGGCAGTG 62.491 60.000 30.85 21.95 0.00 3.66
8610 16855 4.293648 CAGTGGTGGCCGTGACGA 62.294 66.667 6.54 0.00 0.00 4.20
8699 16944 2.216782 TTTGGGCCATGGCGGTATCA 62.217 55.000 29.90 18.57 43.06 2.15
8714 16959 3.449737 CGGTATCACACCTCTCCCTAAAA 59.550 47.826 0.00 0.00 46.19 1.52
8715 16960 4.081309 CGGTATCACACCTCTCCCTAAAAA 60.081 45.833 0.00 0.00 46.19 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
321 360 9.935241 GATCTGGCTCAATATTATCTAGACAAA 57.065 33.333 0.00 0.00 0.00 2.83
377 419 6.295719 AGGTTTTGTTCTATCGTCACCTAT 57.704 37.500 0.00 0.00 31.39 2.57
407 1519 2.502142 TCTGATGCTTGATGCTGGTT 57.498 45.000 0.00 0.00 43.37 3.67
408 1520 2.502142 TTCTGATGCTTGATGCTGGT 57.498 45.000 0.00 0.00 43.37 4.00
409 1521 5.335740 GGATATTTCTGATGCTTGATGCTGG 60.336 44.000 0.00 0.00 43.37 4.85
410 1522 5.240844 TGGATATTTCTGATGCTTGATGCTG 59.759 40.000 0.00 0.00 43.37 4.41
411 1523 5.241064 GTGGATATTTCTGATGCTTGATGCT 59.759 40.000 0.00 0.00 43.37 3.79
412 1524 5.241064 AGTGGATATTTCTGATGCTTGATGC 59.759 40.000 0.00 0.00 43.25 3.91
413 1525 6.711194 AGAGTGGATATTTCTGATGCTTGATG 59.289 38.462 0.00 0.00 0.00 3.07
417 1529 7.147949 CCAAAAGAGTGGATATTTCTGATGCTT 60.148 37.037 0.00 0.00 41.65 3.91
446 1559 3.549794 GCTTGGATCACTTCTGGCTATT 58.450 45.455 0.00 0.00 0.00 1.73
458 1571 3.194116 GCTGATTTGAAAGGCTTGGATCA 59.806 43.478 0.00 7.59 0.00 2.92
472 1585 2.295349 AGTTGCTGAAGGTGCTGATTTG 59.705 45.455 0.00 0.00 0.00 2.32
538 1651 1.825474 GACTCGGGATGTCTTCAGGAA 59.175 52.381 0.00 0.00 0.00 3.36
664 1777 4.416848 AGGTGTAAAGCCCAATGATCCTAT 59.583 41.667 0.00 0.00 0.00 2.57
721 1834 3.056607 GGTGTTGCTGCTTTGATATGGTT 60.057 43.478 0.00 0.00 0.00 3.67
746 1859 7.620880 TGGCAAAGATAGAGTAGTTGTTATGT 58.379 34.615 0.00 0.00 0.00 2.29
782 1903 6.351202 CCTTGATTTATGCCAGAATTGGTTGA 60.351 38.462 0.00 0.00 46.80 3.18
827 1948 1.348775 GGGGTGCTCCTTGGATAGCT 61.349 60.000 4.53 0.00 39.53 3.32
829 1950 0.181350 GTGGGGTGCTCCTTGGATAG 59.819 60.000 4.53 0.00 35.33 2.08
832 1953 1.434513 ATTGTGGGGTGCTCCTTGGA 61.435 55.000 4.53 0.00 35.33 3.53
852 1974 3.070302 CCCTGTCTAGGTTCTTATGGAGC 59.930 52.174 0.00 0.00 42.96 4.70
887 2009 0.890683 GTTCATGGGCTTGTTCCCTG 59.109 55.000 0.00 0.00 46.67 4.45
888 2010 0.779997 AGTTCATGGGCTTGTTCCCT 59.220 50.000 0.00 0.00 46.67 4.20
889 2011 0.890683 CAGTTCATGGGCTTGTTCCC 59.109 55.000 0.00 0.00 46.73 3.97
890 2012 1.815003 CTCAGTTCATGGGCTTGTTCC 59.185 52.381 0.00 0.00 0.00 3.62
953 2080 1.032794 TACTACTGATCCGCCTGCAG 58.967 55.000 6.78 6.78 35.81 4.41
954 2081 1.613925 GATACTACTGATCCGCCTGCA 59.386 52.381 0.00 0.00 0.00 4.41
955 2082 1.401670 CGATACTACTGATCCGCCTGC 60.402 57.143 0.00 0.00 0.00 4.85
956 2083 1.200252 CCGATACTACTGATCCGCCTG 59.800 57.143 0.00 0.00 0.00 4.85
957 2084 1.535833 CCGATACTACTGATCCGCCT 58.464 55.000 0.00 0.00 0.00 5.52
958 2085 0.526662 CCCGATACTACTGATCCGCC 59.473 60.000 0.00 0.00 0.00 6.13
959 2086 0.109226 GCCCGATACTACTGATCCGC 60.109 60.000 0.00 0.00 0.00 5.54
960 2087 0.526662 GGCCCGATACTACTGATCCG 59.473 60.000 0.00 0.00 0.00 4.18
961 2088 0.526662 CGGCCCGATACTACTGATCC 59.473 60.000 0.00 0.00 0.00 3.36
962 2089 0.109226 GCGGCCCGATACTACTGATC 60.109 60.000 7.68 0.00 0.00 2.92
963 2090 1.863662 CGCGGCCCGATACTACTGAT 61.864 60.000 7.68 0.00 40.02 2.90
964 2091 2.549198 CGCGGCCCGATACTACTGA 61.549 63.158 7.68 0.00 40.02 3.41
965 2092 2.050351 CGCGGCCCGATACTACTG 60.050 66.667 7.68 0.00 40.02 2.74
987 2114 1.878656 AAGTCTTGGAGGCGACCGAG 61.879 60.000 12.65 12.65 41.48 4.63
991 2118 0.321996 AGGAAAGTCTTGGAGGCGAC 59.678 55.000 0.00 0.00 0.00 5.19
1003 2130 4.345854 ACGATCAGAAGGTAGAGGAAAGT 58.654 43.478 0.00 0.00 0.00 2.66
1013 2140 0.965866 TGCTCGGACGATCAGAAGGT 60.966 55.000 0.00 0.00 0.00 3.50
1238 2370 1.577328 ATGAAGCAACTGTTCGGCGG 61.577 55.000 7.21 0.00 0.00 6.13
1397 2536 7.763356 TCAGCAGTCTCTACAATTACTAGTTC 58.237 38.462 0.00 0.00 0.00 3.01
1398 2537 7.612244 TCTCAGCAGTCTCTACAATTACTAGTT 59.388 37.037 0.00 0.00 0.00 2.24
1427 2566 3.385577 GAGAGCTAAATGGACGCCTTAG 58.614 50.000 0.00 0.00 0.00 2.18
1440 2579 1.208052 GGTGCATCACTGGAGAGCTAA 59.792 52.381 0.00 0.00 34.40 3.09
1509 2648 1.875514 CCAATCACCACACAGACACAG 59.124 52.381 0.00 0.00 0.00 3.66
1510 2649 1.476652 CCCAATCACCACACAGACACA 60.477 52.381 0.00 0.00 0.00 3.72
1511 2650 1.238439 CCCAATCACCACACAGACAC 58.762 55.000 0.00 0.00 0.00 3.67
1512 2651 0.843309 ACCCAATCACCACACAGACA 59.157 50.000 0.00 0.00 0.00 3.41
1513 2652 1.238439 CACCCAATCACCACACAGAC 58.762 55.000 0.00 0.00 0.00 3.51
1514 2653 0.537143 GCACCCAATCACCACACAGA 60.537 55.000 0.00 0.00 0.00 3.41
1558 2698 4.142271 ACAAGTTCAAAGTGAAATGCCGAA 60.142 37.500 0.00 0.00 38.22 4.30
1559 2699 3.380004 ACAAGTTCAAAGTGAAATGCCGA 59.620 39.130 0.00 0.00 38.22 5.54
1563 2703 8.282592 TCGATAGAACAAGTTCAAAGTGAAATG 58.717 33.333 14.69 0.00 46.15 2.32
1588 2728 6.766452 ACGCTCTTTAAGACAAAAGTACTC 57.234 37.500 0.00 0.00 37.65 2.59
1596 2736 4.201970 CCCAACAAACGCTCTTTAAGACAA 60.202 41.667 0.00 0.00 0.00 3.18
1597 2737 3.314080 CCCAACAAACGCTCTTTAAGACA 59.686 43.478 0.00 0.00 0.00 3.41
1598 2738 3.562557 TCCCAACAAACGCTCTTTAAGAC 59.437 43.478 0.00 0.00 0.00 3.01
1603 2743 0.668535 GCTCCCAACAAACGCTCTTT 59.331 50.000 0.00 0.00 0.00 2.52
1629 2775 3.066190 CGTGCTCCCGGTCCAGTA 61.066 66.667 0.00 0.00 0.00 2.74
1735 2883 5.733620 AGCAACAATTGTGAGGAATTCAT 57.266 34.783 12.82 0.00 38.29 2.57
1766 2914 9.105844 AGACACACCCTATATTCATTATTAGCT 57.894 33.333 0.00 0.00 0.00 3.32
1770 2918 8.826765 CCCTAGACACACCCTATATTCATTATT 58.173 37.037 0.00 0.00 0.00 1.40
1772 2920 6.212791 GCCCTAGACACACCCTATATTCATTA 59.787 42.308 0.00 0.00 0.00 1.90
1773 2921 5.013183 GCCCTAGACACACCCTATATTCATT 59.987 44.000 0.00 0.00 0.00 2.57
1774 2922 4.532521 GCCCTAGACACACCCTATATTCAT 59.467 45.833 0.00 0.00 0.00 2.57
1775 2923 3.901844 GCCCTAGACACACCCTATATTCA 59.098 47.826 0.00 0.00 0.00 2.57
1776 2924 3.901844 TGCCCTAGACACACCCTATATTC 59.098 47.826 0.00 0.00 0.00 1.75
1777 2925 3.646637 GTGCCCTAGACACACCCTATATT 59.353 47.826 10.07 0.00 37.96 1.28
1778 2926 3.240302 GTGCCCTAGACACACCCTATAT 58.760 50.000 10.07 0.00 37.96 0.86
1779 2927 2.023791 TGTGCCCTAGACACACCCTATA 60.024 50.000 12.81 0.00 42.88 1.31
1780 2928 1.273609 TGTGCCCTAGACACACCCTAT 60.274 52.381 12.81 0.00 42.88 2.57
1781 2929 0.115547 TGTGCCCTAGACACACCCTA 59.884 55.000 12.81 0.00 42.88 3.53
1782 2930 1.152118 TGTGCCCTAGACACACCCT 60.152 57.895 12.81 0.00 42.88 4.34
1783 2931 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
1787 2935 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
1799 2947 6.259387 TGCAATAACAAGAGCACATCTAGATG 59.741 38.462 27.63 27.63 44.15 2.90
1800 2948 6.351711 TGCAATAACAAGAGCACATCTAGAT 58.648 36.000 0.00 0.00 37.23 1.98
1801 2949 5.733676 TGCAATAACAAGAGCACATCTAGA 58.266 37.500 0.00 0.00 37.23 2.43
1809 2957 5.939883 ACTTAGATGTGCAATAACAAGAGCA 59.060 36.000 0.00 0.00 32.81 4.26
1810 2958 6.092670 TCACTTAGATGTGCAATAACAAGAGC 59.907 38.462 0.00 0.00 37.81 4.09
1811 2959 7.332926 ACTCACTTAGATGTGCAATAACAAGAG 59.667 37.037 0.00 0.00 37.81 2.85
1812 2960 7.118245 CACTCACTTAGATGTGCAATAACAAGA 59.882 37.037 0.00 0.00 37.81 3.02
1813 2961 7.118245 TCACTCACTTAGATGTGCAATAACAAG 59.882 37.037 0.00 0.00 37.81 3.16
1814 2962 6.934083 TCACTCACTTAGATGTGCAATAACAA 59.066 34.615 0.00 0.00 37.81 2.83
1815 2963 6.463360 TCACTCACTTAGATGTGCAATAACA 58.537 36.000 0.00 0.00 37.81 2.41
1816 2964 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
1817 2965 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
1818 2966 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
1819 2967 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
1820 2968 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
1821 2969 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
1822 2970 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
1823 2971 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
1824 2972 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
1825 2973 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
1826 2974 9.107177 CTTTATGCTTGATTCACTCACTTAGAT 57.893 33.333 0.00 0.00 32.17 1.98
1827 2975 8.314021 TCTTTATGCTTGATTCACTCACTTAGA 58.686 33.333 0.00 0.00 32.17 2.10
1828 2976 8.484641 TCTTTATGCTTGATTCACTCACTTAG 57.515 34.615 0.00 0.00 32.17 2.18
1829 2977 8.314021 TCTCTTTATGCTTGATTCACTCACTTA 58.686 33.333 0.00 0.00 32.17 2.24
1830 2978 7.164122 TCTCTTTATGCTTGATTCACTCACTT 58.836 34.615 0.00 0.00 32.17 3.16
1831 2979 6.705302 TCTCTTTATGCTTGATTCACTCACT 58.295 36.000 0.00 0.00 32.17 3.41
1832 2980 6.974932 TCTCTTTATGCTTGATTCACTCAC 57.025 37.500 0.00 0.00 32.17 3.51
1833 2981 7.984422 TTTCTCTTTATGCTTGATTCACTCA 57.016 32.000 0.00 0.00 0.00 3.41
1834 2982 9.339492 CTTTTTCTCTTTATGCTTGATTCACTC 57.661 33.333 0.00 0.00 0.00 3.51
1835 2983 9.071276 TCTTTTTCTCTTTATGCTTGATTCACT 57.929 29.630 0.00 0.00 0.00 3.41
1836 2984 9.683069 TTCTTTTTCTCTTTATGCTTGATTCAC 57.317 29.630 0.00 0.00 0.00 3.18
1864 3012 9.442047 AGATTCGTGTGAATATTTTCTCTCTTT 57.558 29.630 0.00 0.00 44.79 2.52
1865 3013 9.442047 AAGATTCGTGTGAATATTTTCTCTCTT 57.558 29.630 0.00 0.00 41.89 2.85
1898 3046 9.708092 CACATCTAAGTCATATGTCATTGATCT 57.292 33.333 1.90 0.00 31.60 2.75
1899 3047 8.441608 GCACATCTAAGTCATATGTCATTGATC 58.558 37.037 1.90 0.00 31.60 2.92
1900 3048 7.935210 TGCACATCTAAGTCATATGTCATTGAT 59.065 33.333 1.90 0.00 31.60 2.57
1901 3049 7.274447 TGCACATCTAAGTCATATGTCATTGA 58.726 34.615 1.90 0.00 31.60 2.57
1902 3050 7.486802 TGCACATCTAAGTCATATGTCATTG 57.513 36.000 1.90 0.00 31.60 2.82
1903 3051 8.687292 ATTGCACATCTAAGTCATATGTCATT 57.313 30.769 1.90 0.00 31.60 2.57
1904 3052 9.212641 GTATTGCACATCTAAGTCATATGTCAT 57.787 33.333 1.90 0.00 31.60 3.06
1905 3053 8.424133 AGTATTGCACATCTAAGTCATATGTCA 58.576 33.333 1.90 0.00 31.60 3.58
1906 3054 8.824159 AGTATTGCACATCTAAGTCATATGTC 57.176 34.615 1.90 0.00 31.60 3.06
1910 3058 9.710900 CCATAAGTATTGCACATCTAAGTCATA 57.289 33.333 0.00 0.00 0.00 2.15
1911 3059 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
1912 3060 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
1913 3061 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
1914 3062 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
1915 3063 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
1923 3071 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
1924 3072 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
1955 3103 9.646522 AGGGTTATATATTCATTCAGTTTTGCT 57.353 29.630 0.00 0.00 0.00 3.91
1956 3104 9.683069 CAGGGTTATATATTCATTCAGTTTTGC 57.317 33.333 0.00 0.00 0.00 3.68
1963 3111 9.507329 GCTCTTTCAGGGTTATATATTCATTCA 57.493 33.333 0.00 0.00 0.00 2.57
1964 3112 9.732130 AGCTCTTTCAGGGTTATATATTCATTC 57.268 33.333 0.00 0.00 0.00 2.67
2015 3163 8.943002 CACATTAATTTAGAAAGGTACGAGGTT 58.057 33.333 0.00 0.00 0.00 3.50
2036 3184 2.812591 CACTTTCTGCTCTGCTCACATT 59.187 45.455 0.00 0.00 0.00 2.71
2116 3264 3.585360 AGGTGGATCACAGATAGAGCAT 58.415 45.455 0.00 0.00 35.86 3.79
2117 3265 3.037851 AGGTGGATCACAGATAGAGCA 57.962 47.619 0.00 0.00 35.86 4.26
2186 3334 5.728471 ACCACAATCAAAACATGAACACAA 58.272 33.333 0.00 0.00 42.54 3.33
2454 3607 6.819284 TCTCTGTGCTTCAAATGGAAATTTT 58.181 32.000 0.00 0.00 34.44 1.82
2558 3711 1.129998 CAAAAGCCTGATCAGCACTCG 59.870 52.381 17.76 4.38 0.00 4.18
2580 3932 7.573710 TGTAAGAATGCCCATTTCATACTACT 58.426 34.615 0.00 0.00 0.00 2.57
2663 4015 7.851228 ACAGTGAGACCTTTCAACATATCATA 58.149 34.615 0.00 0.00 0.00 2.15
2729 4081 1.762370 CAATATGCTTTTGGGGTCCCC 59.238 52.381 21.64 21.64 45.71 4.81
2819 4171 2.966050 AGAATTTCGTCCTCAGCTGAC 58.034 47.619 13.74 2.74 0.00 3.51
2970 4322 6.037391 ACTGAAGAAAAATGCAAAATGTGTGG 59.963 34.615 0.00 0.00 0.00 4.17
2982 4334 9.778993 CATACACCTGAATACTGAAGAAAAATG 57.221 33.333 0.00 0.00 0.00 2.32
2983 4335 9.520515 ACATACACCTGAATACTGAAGAAAAAT 57.479 29.630 0.00 0.00 0.00 1.82
3044 4396 3.744426 ACTAAATACAGGAACACACACGC 59.256 43.478 0.00 0.00 0.00 5.34
3082 4434 2.583441 TTGCGTGGGGGACTCTCAG 61.583 63.158 0.00 0.00 0.00 3.35
3085 4437 2.847234 TGTTGCGTGGGGGACTCT 60.847 61.111 0.00 0.00 0.00 3.24
3236 4588 5.018149 TGGGTTTAAAGTACCAAATAGGGC 58.982 41.667 4.25 0.00 43.89 5.19
3244 4596 8.361889 GCTAAAGAAATTGGGTTTAAAGTACCA 58.638 33.333 2.88 2.88 37.40 3.25
3260 4612 8.150296 AGCCAAGTAACATTTTGCTAAAGAAAT 58.850 29.630 0.00 0.00 0.00 2.17
3349 4818 6.232581 AGGAGAGACACCTAAAGATCAATG 57.767 41.667 0.00 0.00 35.84 2.82
3532 5003 4.142513 GCAGCTTCAAAAGGGTCTGAATAG 60.143 45.833 0.00 0.00 31.40 1.73
3588 5059 9.088987 AGAAAAGAAAATTGGAGCACCTTATTA 57.911 29.630 0.71 0.00 37.04 0.98
3741 5212 2.254152 AGGAGCTGACCTGGTAATCA 57.746 50.000 0.00 0.00 39.01 2.57
3766 5237 3.289834 CTGGTGGCTGGTGCACAC 61.290 66.667 20.43 7.55 41.91 3.82
3782 5253 1.490574 GGTCAGTGAGGTAGCATCCT 58.509 55.000 0.00 0.00 40.97 3.24
3785 5256 0.614979 ACCGGTCAGTGAGGTAGCAT 60.615 55.000 0.00 0.00 36.34 3.79
3802 5273 6.019762 GCGTGCTAAGAAAATAAACACTACC 58.980 40.000 0.00 0.00 0.00 3.18
3824 5295 9.372541 GAAATTTAATTAAATCATTGCCATGCG 57.627 29.630 20.86 0.00 35.00 4.73
3882 5353 9.277783 GCCATGTTATCAGTATTATCTGAACTT 57.722 33.333 0.62 0.00 45.65 2.66
3886 5357 7.335171 GCATGCCATGTTATCAGTATTATCTGA 59.665 37.037 6.36 0.00 46.39 3.27
4014 5491 5.598417 AGTTTGAAAATCTAACTGGGCAAGT 59.402 36.000 6.43 0.00 40.07 3.16
4101 5578 4.092279 CTGACCCATATATCAGCTCCTCA 58.908 47.826 0.00 0.00 36.22 3.86
4144 5621 3.181439 ACAAACTGAAAAGGAGGGAGGAG 60.181 47.826 0.00 0.00 0.00 3.69
4232 5712 4.861210 TGTTGTAAATAAGGGCAAACACG 58.139 39.130 0.00 0.00 0.00 4.49
4256 5739 7.783119 TCAGGGTACTACTTATATGCAGAGAAA 59.217 37.037 0.00 0.00 0.00 2.52
4258 5741 6.849151 TCAGGGTACTACTTATATGCAGAGA 58.151 40.000 0.00 0.00 0.00 3.10
4259 5742 7.710676 ATCAGGGTACTACTTATATGCAGAG 57.289 40.000 0.00 0.00 0.00 3.35
4294 5777 9.515226 GTACATAGGACATAGAGAAGAGAGATT 57.485 37.037 0.00 0.00 0.00 2.40
4355 5838 8.465273 AGGATTAATAAGCTTATGGAACCAAC 57.535 34.615 19.53 6.21 0.00 3.77
4436 5919 3.821421 AAAGTGACGTGAGAGGACTTT 57.179 42.857 0.00 0.00 34.75 2.66
4489 5972 4.430441 AGTCCAAATCTAAGTCCAGGACT 58.570 43.478 17.31 17.31 46.90 3.85
4506 5989 1.000607 GTTAGACGTCTGCACAGTCCA 60.001 52.381 28.12 1.06 35.65 4.02
4507 5990 1.269998 AGTTAGACGTCTGCACAGTCC 59.730 52.381 28.12 6.44 35.65 3.85
4642 10333 5.359576 AGTTCATGCAACACCTTTTGACTTA 59.640 36.000 0.00 0.00 37.48 2.24
4793 10496 5.871465 TGCAGCGATGATTACTTTTAACA 57.129 34.783 4.02 0.00 0.00 2.41
4836 10539 1.002134 CTTGGCCTGGTCGTTGGAT 60.002 57.895 3.32 0.00 0.00 3.41
4857 10560 7.728532 AGATAACAAAGTTGGGGTTTGATTACT 59.271 33.333 2.70 0.00 38.13 2.24
4859 10562 8.485578 AAGATAACAAAGTTGGGGTTTGATTA 57.514 30.769 2.70 0.00 38.13 1.75
5032 10744 9.547753 GTTAGCAATCACTAAATCAATCTCCTA 57.452 33.333 0.00 0.00 34.04 2.94
5071 10783 8.921670 CATTGACGATCCGATTACAAATATACA 58.078 33.333 0.00 0.00 0.00 2.29
5165 10877 2.338620 CCTCGTGCGAACACCAGA 59.661 61.111 0.00 0.00 44.40 3.86
5217 10929 8.562892 CATCCTTCGATCCAATTTATATATGCC 58.437 37.037 0.00 0.00 0.00 4.40
5220 10932 9.911788 AAGCATCCTTCGATCCAATTTATATAT 57.088 29.630 0.00 0.00 0.00 0.86
5242 10954 4.612412 ACGGGGCGAAACGAAGCA 62.612 61.111 0.00 0.00 34.54 3.91
5407 11119 2.582052 AGGTCACGAAAGAATTTGCCA 58.418 42.857 0.00 0.00 39.27 4.92
5414 11126 5.364778 TCTCATCAAAAGGTCACGAAAGAA 58.635 37.500 0.00 0.00 0.00 2.52
5446 11158 4.330074 GTCGTTCTTCATCCAAATCGACAT 59.670 41.667 0.00 0.00 43.41 3.06
5447 11159 3.678072 GTCGTTCTTCATCCAAATCGACA 59.322 43.478 0.00 0.00 43.41 4.35
5476 11188 6.383415 GTCGTCTCACTTTTCTAGTCAGATT 58.617 40.000 0.00 0.00 36.32 2.40
5490 11202 2.333389 GTGATCAACGTCGTCTCACT 57.667 50.000 20.00 0.00 34.73 3.41
5503 11215 2.130272 ACTCCTACTCAGCGTGATCA 57.870 50.000 0.00 0.00 0.00 2.92
5634 11346 3.053291 CCGCGTGGCTGGCTAAAA 61.053 61.111 0.00 0.00 0.00 1.52
5712 11453 3.183775 CCACTGCGTATACTATTTTCCGC 59.816 47.826 0.56 0.00 41.34 5.54
5736 11477 7.201635 CGATGAAATCACACTATCAATTGGTCA 60.202 37.037 5.42 0.00 45.97 4.02
5762 11503 3.312697 GTCAATGGCGTTAGGATTCCTTC 59.687 47.826 11.25 4.18 34.61 3.46
5793 11537 2.029486 GCAAAGTCGTCACACGTTTGTA 59.971 45.455 0.98 0.00 43.14 2.41
5794 11538 1.201987 GCAAAGTCGTCACACGTTTGT 60.202 47.619 0.98 0.00 43.14 2.83
5795 11539 1.452717 GCAAAGTCGTCACACGTTTG 58.547 50.000 0.00 0.00 43.14 2.93
5803 11547 0.856641 GCTAACACGCAAAGTCGTCA 59.143 50.000 0.00 0.00 41.21 4.35
5816 11560 8.107095 AGGAGATTGGTTTAGTTATTGCTAACA 58.893 33.333 0.00 0.00 39.81 2.41
5826 11570 3.916989 ACCTCCAGGAGATTGGTTTAGTT 59.083 43.478 19.21 0.00 39.35 2.24
6031 11775 4.936411 TGTACTTTCTTTGTGTCCAACGAA 59.064 37.500 0.00 0.00 37.14 3.85
6111 11858 1.141053 CCAGCACCCCTTAGTCCATAC 59.859 57.143 0.00 0.00 0.00 2.39
6155 11902 2.124320 CCCACGGGCCTTGTATGG 60.124 66.667 9.38 3.44 0.00 2.74
6168 11915 3.580319 ACCTCCACTTGGGCCCAC 61.580 66.667 28.70 0.00 36.21 4.61
6188 11935 1.134220 TCGGAGTCAAAAGGTGTTGCT 60.134 47.619 0.00 0.00 0.00 3.91
6256 12003 6.457355 CCAATTGGACTCACATTCAAATTCA 58.543 36.000 20.50 0.00 37.39 2.57
6326 12089 8.234136 TCATACGTCTATAACTTTCACATCCT 57.766 34.615 0.00 0.00 0.00 3.24
6353 12116 3.102972 AGACTGCACAGACATACCTGAT 58.897 45.455 4.31 0.00 37.59 2.90
6474 12253 2.724977 TCACAAGTGACGAGGACATC 57.275 50.000 0.00 0.00 34.14 3.06
6483 12262 6.197096 GTCACAATCACATTTTCACAAGTGAC 59.803 38.462 1.73 0.00 43.01 3.67
6782 12561 4.082300 TGCCTGTTACAGCATACCAAATTG 60.082 41.667 6.88 0.00 0.00 2.32
6789 12569 3.561725 GGAATCTGCCTGTTACAGCATAC 59.438 47.826 6.88 0.00 35.04 2.39
6870 12695 2.038952 AGCAGTTACAAGGTCATGAGCA 59.961 45.455 25.71 3.04 0.00 4.26
7254 13288 0.788391 GGTGAAGCGTAAGAACACGG 59.212 55.000 0.00 0.00 42.18 4.94
7379 13413 5.356882 CTCATAAAGCAAACTCCGTTTCA 57.643 39.130 0.00 0.00 33.10 2.69
7409 13443 9.199982 GCAATCATAGAAATCCAATAACATTGG 57.800 33.333 11.03 11.03 40.87 3.16
7585 13620 7.338710 TCCTTCCAGAGAAATCGAAACATAAT 58.661 34.615 0.00 0.00 0.00 1.28
7587 13622 6.294361 TCCTTCCAGAGAAATCGAAACATA 57.706 37.500 0.00 0.00 0.00 2.29
7703 13738 2.094545 GTGTTGATTGCAATCCCCTGTC 60.095 50.000 31.35 17.08 36.22 3.51
7711 13746 4.021719 AGCAGCTTTAGTGTTGATTGCAAT 60.022 37.500 12.83 12.83 36.22 3.56
7721 13756 1.878102 CGAACCCAGCAGCTTTAGTGT 60.878 52.381 0.00 0.00 0.00 3.55
7766 13801 2.164422 GCCTTGGAAAATGAGTAGCACC 59.836 50.000 0.00 0.00 0.00 5.01
7776 13811 5.130975 GGAAAGGAATATGGCCTTGGAAAAT 59.869 40.000 3.32 0.00 44.72 1.82
7777 13812 4.469586 GGAAAGGAATATGGCCTTGGAAAA 59.530 41.667 3.32 0.00 44.72 2.29
7782 13817 4.477249 AGATGGAAAGGAATATGGCCTTG 58.523 43.478 3.32 0.00 44.72 3.61
7786 13821 6.548993 AGAAGAAAGATGGAAAGGAATATGGC 59.451 38.462 0.00 0.00 0.00 4.40
7860 13897 6.313905 CCACATTGACTAGAATTAGACACACC 59.686 42.308 0.00 0.00 32.60 4.16
7867 13904 8.567285 AAAAGGACCACATTGACTAGAATTAG 57.433 34.615 0.00 0.00 0.00 1.73
7888 13925 6.404074 GGCTCCATATGTCTCAAAGTGAAAAG 60.404 42.308 1.24 0.00 0.00 2.27
7942 13981 6.976349 CGGTACTATACTTGTCAGCACAATTA 59.024 38.462 0.00 0.00 41.82 1.40
7991 14057 6.252281 GTTGTACACGTGATGAAAACTGAAA 58.748 36.000 25.01 0.00 0.00 2.69
7995 14061 4.193090 TGGTTGTACACGTGATGAAAACT 58.807 39.130 25.01 0.00 0.00 2.66
8049 14115 3.022557 AGTATCGTACTGCCAAGGGTA 57.977 47.619 0.00 0.00 37.69 3.69
8055 14121 2.730382 TCCTCAAGTATCGTACTGCCA 58.270 47.619 0.00 0.00 39.39 4.92
8057 14123 4.508124 CCATTTCCTCAAGTATCGTACTGC 59.492 45.833 0.00 0.00 39.39 4.40
8058 14124 5.661458 ACCATTTCCTCAAGTATCGTACTG 58.339 41.667 0.00 0.00 39.39 2.74
8060 14126 6.338937 AGAACCATTTCCTCAAGTATCGTAC 58.661 40.000 0.00 0.00 31.28 3.67
8061 14127 6.540438 AGAACCATTTCCTCAAGTATCGTA 57.460 37.500 0.00 0.00 31.28 3.43
8062 14128 5.422214 AGAACCATTTCCTCAAGTATCGT 57.578 39.130 0.00 0.00 31.28 3.73
8063 14129 6.816640 TGTTAGAACCATTTCCTCAAGTATCG 59.183 38.462 0.00 0.00 31.28 2.92
8064 14130 8.561738 TTGTTAGAACCATTTCCTCAAGTATC 57.438 34.615 0.00 0.00 31.28 2.24
8065 14131 8.934023 TTTGTTAGAACCATTTCCTCAAGTAT 57.066 30.769 0.00 0.00 31.28 2.12
8066 14132 8.754991 TTTTGTTAGAACCATTTCCTCAAGTA 57.245 30.769 0.00 0.00 31.28 2.24
8067 14133 7.654022 TTTTGTTAGAACCATTTCCTCAAGT 57.346 32.000 0.00 0.00 31.28 3.16
8068 14134 6.642540 GCTTTTGTTAGAACCATTTCCTCAAG 59.357 38.462 0.00 0.00 31.28 3.02
8070 14136 5.596361 TGCTTTTGTTAGAACCATTTCCTCA 59.404 36.000 0.00 0.00 31.28 3.86
8071 14137 5.920840 GTGCTTTTGTTAGAACCATTTCCTC 59.079 40.000 0.00 0.00 31.28 3.71
8077 14143 5.827797 TCTCAAGTGCTTTTGTTAGAACCAT 59.172 36.000 1.64 0.00 0.00 3.55
8123 14189 2.350580 GCTCTGCTTCTGCTCAAAGTTG 60.351 50.000 0.00 0.00 40.48 3.16
8180 14247 5.535753 ATCAAGGTCCTTTCCTTTTTGTG 57.464 39.130 0.00 0.00 44.36 3.33
8198 14265 3.689161 GCCACACATGTAGCACTTATCAA 59.311 43.478 0.00 0.00 32.91 2.57
8213 14280 3.830121 TGCCATATATTCATGCCACACA 58.170 40.909 0.00 0.00 0.00 3.72
8220 14287 6.596888 AGATTCGGAGTTGCCATATATTCATG 59.403 38.462 0.00 0.00 35.94 3.07
8250 14317 5.045942 TCCTCACATCACTAAACTTGCCATA 60.046 40.000 0.00 0.00 0.00 2.74
8267 14334 4.098914 ACTAAAAGTTGCCATCCTCACA 57.901 40.909 0.00 0.00 0.00 3.58
8289 14356 1.985473 AGAAGTTGTCATGCTTGGCA 58.015 45.000 2.24 2.24 44.86 4.92
8290 14357 3.375782 AAAGAAGTTGTCATGCTTGGC 57.624 42.857 0.00 0.00 0.00 4.52
8291 14358 5.350633 TCAAAAAGAAGTTGTCATGCTTGG 58.649 37.500 0.00 0.00 0.00 3.61
8354 14421 5.668558 ACTACTAAACTTGCGTTCCAAAG 57.331 39.130 0.00 0.00 31.94 2.77
8357 14424 7.551035 TTTTTACTACTAAACTTGCGTTCCA 57.449 32.000 0.00 0.00 31.66 3.53
8358 14425 6.576313 GCTTTTTACTACTAAACTTGCGTTCC 59.424 38.462 0.00 0.00 31.66 3.62
8362 14429 5.673029 ACGCTTTTTACTACTAAACTTGCG 58.327 37.500 0.00 0.00 39.00 4.85
8367 14434 6.075918 GCCTTGACGCTTTTTACTACTAAAC 58.924 40.000 0.00 0.00 0.00 2.01
8386 14455 3.121030 CGAAGCACTCCGGCCTTG 61.121 66.667 0.00 0.00 0.00 3.61
8408 14477 8.806429 TTCCAAATGATAAGTGACACACATAT 57.194 30.769 8.59 3.52 36.74 1.78
8411 14480 6.951062 TTTCCAAATGATAAGTGACACACA 57.049 33.333 8.59 3.09 36.74 3.72
8415 14484 7.831691 TTCCTTTTCCAAATGATAAGTGACA 57.168 32.000 0.00 0.00 32.09 3.58
8502 16747 2.798499 AAGTCAAGTCCGACTGACAACG 60.798 50.000 22.34 0.00 45.56 4.10
8525 16770 1.684983 AGGAACGACGAGGAAGACAAA 59.315 47.619 0.00 0.00 0.00 2.83
8550 16795 4.443913 TGCTAAGCACATCACTACGTTA 57.556 40.909 0.00 0.00 31.71 3.18
8551 16796 3.313012 TGCTAAGCACATCACTACGTT 57.687 42.857 0.00 0.00 31.71 3.99
8570 16815 1.207811 GGCCAATGGTTTCCCTCAATG 59.792 52.381 0.00 0.00 0.00 2.82
8573 16818 1.304052 CGGCCAATGGTTTCCCTCA 60.304 57.895 2.24 0.00 0.00 3.86
8604 16849 2.837280 CAGCGTTGTCGTCGTCAC 59.163 61.111 0.00 0.00 39.49 3.67
8610 16855 3.575351 GAGGGAGCAGCGTTGTCGT 62.575 63.158 0.00 0.00 39.49 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.